Citrus Sinensis ID: 047171
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1224 | 2.2.26 [Sep-21-2011] | |||||||
| Q6YUU5 | 1245 | Putative multidrug resist | yes | no | 0.964 | 0.947 | 0.530 | 0.0 | |
| Q9LHD1 | 1240 | ABC transporter B family | yes | no | 0.972 | 0.959 | 0.526 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.968 | 0.967 | 0.504 | 0.0 | |
| Q9LSJ6 | 1240 | ABC transporter B family | no | no | 0.970 | 0.958 | 0.502 | 0.0 | |
| Q9LSJ2 | 1229 | ABC transporter B family | no | no | 0.973 | 0.969 | 0.490 | 0.0 | |
| Q9LSJ8 | 1228 | ABC transporter B family | no | no | 0.966 | 0.963 | 0.494 | 0.0 | |
| Q9LHK4 | 1241 | Putative ABC transporter | no | no | 0.954 | 0.941 | 0.442 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.977 | 0.930 | 0.431 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.968 | 0.946 | 0.421 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.977 | 0.935 | 0.412 | 0.0 |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1305 bits (3378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/1245 (53%), Positives = 891/1245 (71%), Gaps = 65/1245 (5%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGT-SDI------SISIEAV 59
+F +AD D L++ G +G++GDG+ TP+ + I S + N+LG+ +DI +++ A
Sbjct: 23 VFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADIVKEFSSKVNVNAR 82
Query: 60 DKVPE----------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVV 109
+ V +G CW RTAERQASR+R YL++VLRQ+V +FD ST +V+
Sbjct: 83 NLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFD--LKKGSTAEVI 140
Query: 110 TNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVF 169
T++++D+ +QD ++EK+PN + + F GS V F L WRL L ALP +L I+PG ++
Sbjct: 141 TSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIPGFMY 200
Query: 170 GKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQG 229
G++L L + ++ Y G IAEQA+SS RTVYSFV E T+ +FS AL ++ LG+KQG
Sbjct: 201 GRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLGLKQG 260
Query: 230 LTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLS 289
L KG+ +GS G+T+ WAF W GS LV G +GG VF ++GG+ + S L N+
Sbjct: 261 LAKGIAVGSNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLSNVK 320
Query: 290 FISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP----- 344
+ S+A++AA RI E+I RVP I+SE + G+ LA + GE+EF++V+F YP+RP++P
Sbjct: 321 YFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPIFVSF 380
Query: 345 --------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396
T+ LVG SGSGKSTVI+LLERFYDP G +++DG I++L+LKWLR+QMGLV
Sbjct: 381 NLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQMGLV 440
Query: 397 NQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+QEP LF+TSI+ENIL GK A+ E VV AA+AAN H+FI +L GY+T+VG+ GVQ+SG
Sbjct: 441 SQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGVQMSG 500
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIR 516
GQKQRIAIARA+++ PKILLLDEATSALD ESER+VQEALD AS GRT I+IAHRLSTIR
Sbjct: 501 GQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLSTIR 560
Query: 517 KADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV----ASGSYNPT 572
AD+I V+QSG V E G HD L+ +NG YS +V+LQQ+ NE+ +GS +
Sbjct: 561 NADIIAVMQSGEVKELGPHDELIANDNG---LYSSLVRLQQTRDSNEIDEIGVTGSTSAV 617
Query: 573 KSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDN 632
S HS+ + + + S ++ ++D N
Sbjct: 618 GQSSSHSMSRRFSAASRSSSARSLGDA------------------------RDDDNTEKP 653
Query: 633 SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692
S RLL ++A EWK+ L+G + G I P+YAY +GS++S YF+ D +++K +
Sbjct: 654 KLPVPSFRRLLMLNAPEWKQALMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDK 713
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
TR Y LIF+GLA L+ + N+ QHYNF MGE+L +R+RE+ML KI TFEIGWFD+DEN+S
Sbjct: 714 TRTYALIFVGLAVLSFLINIGQHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSS 773
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGC 812
AIC++LA +A++VRS + DRM+L+IQ + +A T+ L++ WR+A+VMIAVQPL I C
Sbjct: 774 GAICSQLAKDANVVRSLVGDRMALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVC 833
Query: 813 FYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872
FY+R VL+KSMS+K+ +Q+E S+LA+EA +N RTITAFSSQ+RIL LF ++ GP+KES
Sbjct: 834 FYARRVLLKSMSKKSIHAQAESSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKES 893
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADA 932
I+QSWF+G+GL +S L T + L FWY GR+M + +S K+LFQ F +L+STG+ IADA
Sbjct: 894 IRQSWFAGLGLGTSMSLMTCTWALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADA 953
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
GSMT+D+AKG+ A+ ++F +LDR++EIDP++P+ + E KG ++++ V F+YPSRPD
Sbjct: 954 GSMTTDLAKGADAVASVFAVLDRETEIDPDNPQGYK--PEKLKGEVDIRGVDFAYPSRPD 1011
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
+IFKG TL I+ GK+ ALVGQSGSGKSTIIGLIERFYDP GSV +D R+IK+YNLR L
Sbjct: 1012 VIIFKGFTLSIQPGKSTALVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRAL 1071
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
R I LVSQEPTLFAGTIR+NIVYG E A+EAEI AA ANAH+FIS+ +DGYDT+CGE
Sbjct: 1072 RRHIGLVSQEPTLFAGTIRENIVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGE 1131
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RGVQLSGGQKQRIA+ARA+LKNP ILLLDEATSALDS SE +VQEAL+++M+GRT VVVA
Sbjct: 1132 RGVQLSGGQKQRIAIARAILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVA 1191
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
HRLSTIQ D I V++ G VVE+GT +SL++ G G Y+SL+ +Q
Sbjct: 1192 HRLSTIQNCDLITVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQ 1236
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1288 bits (3332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/1251 (52%), Positives = 893/1251 (71%), Gaps = 61/1251 (4%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDI-------S 53
G+ +F +ADG D LL+ G +G++GDG TPL + I S ++N +G S S
Sbjct: 17 FGSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQS 76
Query: 54 ISIEAVDKVPE----------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSS 103
IS +V + +G CWTRT ERQ +R+R +YL++VLRQ+VG+FD +S+
Sbjct: 77 ISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTST 136
Query: 104 STFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFI 163
S V+T+++SD+ IQD ++EK+PN L ++F+GS +V F+L WRLA+ LPF +L +
Sbjct: 137 S--DVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLV 194
Query: 164 VPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223
+PG+++G+ L + + ++ Y AG +AEQAISS+RTVY+F GE +T+ +FS AL+ +++
Sbjct: 195 IPGLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVK 254
Query: 224 LGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMS 283
LGIKQGL KG+ +GS G+T+ W F SW GS +V G +GG VF +GGV +
Sbjct: 255 LGIKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGG 314
Query: 284 ALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR--- 340
L NL + +A + RI E+I+RVP I+S++ G L +RGE+EFK+V F YP+R
Sbjct: 315 GLSNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNVKFVYPSRLET 374
Query: 341 ----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
P T+ LVG SGSGKSTVISLL+RFYDP+ G IL+DG I KLQ+KWLR
Sbjct: 375 SIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLR 434
Query: 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450
SQMGLV+QEP LF+T+IKENIL GK ASM+ VV+AA+A+N H+FI +L +GYET+VG+
Sbjct: 435 SQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGER 494
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
GVQ+SGGQKQRIAIARA+I+ P ILLLDEATSALD+ESER+VQEAL+ AS GRT I+IAH
Sbjct: 495 GVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAH 554
Query: 511 RLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYN 570
RLSTIR AD+I V+++G ++E+GSHD LM+ +G+ YS +V LQQ ++ S
Sbjct: 555 RLSTIRNADVISVVKNGHIVETGSHDELMENIDGQ---YSTLVHLQQIEKQDINVSVKIG 611
Query: 571 PTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFH 630
P S S++ + ++ SS S+TG +++N ++
Sbjct: 612 PISDPSKDIRNSSRV--STLSRSSSAN-------------SVTGP---STIKNLSE---- 649
Query: 631 DNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLK 690
DN S RLL M+ EWK+ L GC+ + GAI P+YAY LGS+VS YF+ ++K
Sbjct: 650 DNKPQLPSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIK 709
Query: 691 SETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDEN 750
+TR+Y L F+GLA L+ + N+ QHYNFA MGE+L +R+RE+ML K+ TFE+GWFD+DEN
Sbjct: 710 EKTRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDEN 769
Query: 751 TSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNI 810
+S AIC+RLA +A++VRS + DRM+L++Q + ++A+T+ L++ WR+A+VMIAVQP+ I
Sbjct: 770 SSGAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVII 829
Query: 811 GCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKK 870
CFY+R VL+KSMS+KA K+Q E S+LA+EA +N RTITAFSSQ+RI+ + + + P++
Sbjct: 830 VCFYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRR 889
Query: 871 ESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIA 930
ESI+QSWF+G GL SQ LT+ + L FWY GR++ G ++ K LF+ F +L+STG+ IA
Sbjct: 890 ESIRQSWFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIA 949
Query: 931 DAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSR 990
DAGSMT+D+AKGS A+ ++F +LDR + IDPEDP E E G +E +V FSYP+R
Sbjct: 950 DAGSMTTDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYE--TERITGQVEFLDVDFSYPTR 1007
Query: 991 PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050
PD +IFK ++KIE GK+ A+VG SGSGKSTIIGLIERFYDP G V +D R+I+SY+LR
Sbjct: 1008 PDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLR 1067
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
LR IALVSQEPTLFAGTIR+NI+YG + EAEI +AA ANAH+FI+S +GYDT
Sbjct: 1068 SLRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDT 1127
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
YCG+RGVQLSGGQKQRIA+ARAVLKNP +LLLDEATSALDS SE +VQ+ALE++MVGRT
Sbjct: 1128 YCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTS 1187
Query: 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219
VV+AHRLSTIQ D I V+ GK+VE+GT SSLLS G G Y+SL+ +Q +
Sbjct: 1188 VVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQTT 1238
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1260 bits (3260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/1249 (50%), Positives = 868/1249 (69%), Gaps = 64/1249 (5%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDI-------S 53
G+ +F +ADG D +L+ G +G++GDG +TP+ +I S ++N +G S +
Sbjct: 5 FGSIRSIFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGGSSFDDETFMQT 64
Query: 54 ISIEAVDKVPE----------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSS 103
++ AV V +G CWTRT ERQA+++R +YLK+VLRQ+VG+FD +S+
Sbjct: 65 VAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVTST 124
Query: 104 STFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFI 163
S V+T+++SD+ IQD ++EK+PN L + ++F+ S +V FLL WRL + PF +L +
Sbjct: 125 S--DVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLL 182
Query: 164 VPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223
+PG+++G+ L + + ++ Y AG IAEQ ISS+RTVY+F E + +++FS AL+ +++
Sbjct: 183 IPGLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVK 242
Query: 224 LGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMS 283
LG++QGL KG+ +GS G+TY W F +W GS +V G KGG V +C GG +
Sbjct: 243 LGLRQGLAKGIAIGSNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQ 302
Query: 284 ALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT 343
+L NL + S+A RI ++I+RVP I+S++ G+ L RGE+EF V F+YP+RP+T
Sbjct: 303 SLSNLKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPET 362
Query: 344 P-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
P T+ LVG SGSGKSTVISLL+RFYDP+ G IL+DG I KLQ+KWLR
Sbjct: 363 PIFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLR 422
Query: 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450
SQMGLV+QEP+LF+TSIKENIL GK ASM+ VV+AA+A+N H FI + + Y+T+VG+
Sbjct: 423 SQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGER 482
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
GVQLSGGQKQRIAIARA+I+ P ILLLDEATSALD+ESER+VQEALD AS GRT I+IAH
Sbjct: 483 GVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAH 542
Query: 511 RLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYN 570
RLSTIR AD+I V+ +GR+IE+GSH+ L++ +G+ Y+ +V+LQQ
Sbjct: 543 RLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQ---YTSLVRLQQ------------- 586
Query: 571 PTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFH 630
+ + ++ H + EG + S SP I T S + N + K
Sbjct: 587 ---------VDNKESDHISVEEGQASSLSKDLKYSPKEFIHSTSSNIVRDFPNLSPK--- 634
Query: 631 DNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLK 690
D S RL+ M+ EWK L GCLG+A GA+ P Y+Y GS+VS YF+ ++K
Sbjct: 635 DGKSLVPSFKRLMSMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIK 694
Query: 691 SETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDEN 750
+TR+Y L+F+GLA T ++N+ QHY FA MGE+L +R+RE+ML KI TFE+ WFD+DEN
Sbjct: 695 EKTRIYVLLFVGLALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDEN 754
Query: 751 TSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNI 810
+S AIC+RLA +A++VRS + DRMSLL+Q + S+ + L+++WR +IVM++VQP+ +
Sbjct: 755 SSGAICSRLAKDANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIV 814
Query: 811 GCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKK 870
CFY++ VL+KSMS A K Q E S+LA+EA +N RTITAFSSQ+RI++L + +GP+K
Sbjct: 815 VCFYTQRVLLKSMSRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRK 874
Query: 871 ESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIA 930
+S +QSW +GI L +SQ L T L FWY G+++ G + K+ + F + STG+ IA
Sbjct: 875 DSARQSWLAGIMLGTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIA 934
Query: 931 DAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSR 990
+AG+MT D+ KGS A+ ++F +LDR + I+PE+P + + KG I NV F+YP+R
Sbjct: 935 EAGTMTKDLVKGSDAVASVFAVLDRNTTIEPENPDGY--VPKKVKGQISFSNVDFAYPTR 992
Query: 991 PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050
PD +IF+ ++ IE GK+ A+VG SGSGKSTII LIERFYDP G V +D R+I+S +LR
Sbjct: 993 PDVIIFQNFSIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLR 1052
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
LR IALVSQEPTLFAGTIR+NI+YG E+EI +AA ANAH+FI+S +GYDT
Sbjct: 1053 SLRQHIALVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDT 1112
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
CG+RGVQLSGGQKQRIA+ARAVLKNP +LLLDEATSALDS SE++VQ+ALE++MVGRT
Sbjct: 1113 CCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTS 1172
Query: 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
VV+AHRLSTIQK D I V++NG VVE G SSLL+ G GAY+SL+ +Q
Sbjct: 1173 VVIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1255 bits (3248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/1249 (50%), Positives = 876/1249 (70%), Gaps = 61/1249 (4%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD--------- 51
G+ +F +ADG D +L+ G +G++GDG +TP+ ++I + ++N LGTS
Sbjct: 17 FGSIRSIFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLGTSSSNNKTFMQT 76
Query: 52 ISISIEAVDKVPE--------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSS 103
IS ++ A+ V +G CWTRT ERQA+R+R +YL++VLRQ+VG+FD +S+
Sbjct: 77 ISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQDVGYFDLHVTST 136
Query: 104 STFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFI 163
S V+T+I+SD+ IQD ++EK+PN L + ++F+ S +V+F+L WRL + PF +L +
Sbjct: 137 S--DVITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTIVGFPFIILLL 194
Query: 164 VPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223
VPG+++G+ L + + + Y AG IAEQAISS+RTVY+F E++ + +FS ALR +++
Sbjct: 195 VPGLMYGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGKFSTALRGSVK 254
Query: 224 LGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMS 283
LG++QGL KG+ +GS G+T+ WAF +W GS LV G KGG VFV C GGV +
Sbjct: 255 LGLRQGLAKGITIGSNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCITYGGVSLGQ 314
Query: 284 ALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT 343
+L NL + S+A A RI E+I RVP I+S + G+ L ++GE+EF V F+Y +RP+T
Sbjct: 315 SLSNLKYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFTYLSRPET 374
Query: 344 -------------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
T+ LVG SGSGKSTVISLL+RFYDP+ G IL+DG I KLQ+ WLR
Sbjct: 375 TIFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQVNWLR 434
Query: 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450
SQMGLV+QEP+LF+TSI ENIL GK AS++ VV+AA+A+N H FI + GY+T+VG+
Sbjct: 435 SQMGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQVGER 494
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
GVQ+SGGQKQRIAIARA+I+ PKILLLDEATSALD+ESER+VQE+LD AS GRT I+IAH
Sbjct: 495 GVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAH 554
Query: 511 RLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYN 570
RLSTIR AD+I V+ +G+++E+GSH+ L++ +G+ Y+ +V LQQ M NE ++ + N
Sbjct: 555 RLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQ---YTSLVSLQQ--MENEESNVNIN 609
Query: 571 PTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFH 630
+ +K +S ++ N GS V N +D +
Sbjct: 610 VSVTKDQVMSLSKDFKYSQHNS--------------------IGSTSSSIVTNVSDLIPN 649
Query: 631 DNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLK 690
DN S RL+ M+ EWK L GCL +A G + P AY GSV+S +F+ ++K
Sbjct: 650 DNQPLVPSFTRLMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIK 709
Query: 691 SETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDEN 750
+TR+Y L+F+GLA + + N+ QHY FA MGE+L +R+RE+ML KI TFE+ WFD D+N
Sbjct: 710 EKTRIYVLLFVGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDN 769
Query: 751 TSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNI 810
+S AIC+RLA +A++VRS + DRMSLL+Q + +A + L++ WR+AIVMI+VQPL +
Sbjct: 770 SSGAICSRLAKDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIV 829
Query: 811 GCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKK 870
CFY++ VL+KS+SEKA K+Q E S+LA+EA +N RTITAFSSQ+RI+ L ++ +GP++
Sbjct: 830 VCFYTQRVLLKSLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRR 889
Query: 871 ESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIA 930
ES+ +SW +GI L +S+ L T + L FWY GR++ G + K F+ F + ++TG+ IA
Sbjct: 890 ESVHRSWLAGIVLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIA 949
Query: 931 DAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSR 990
DAG+MT+D+A+G A+ ++F +LDR + I+P++P + E KG I NV F+YP+R
Sbjct: 950 DAGTMTTDLARGLDAVGSVFAVLDRCTTIEPKNPDGY--VAEKIKGQITFLNVDFAYPTR 1007
Query: 991 PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050
PD +IF+ +++I+ GK+ A+VG SGSGKSTIIGLIERFYDP G+V +D R+I+SY+LR
Sbjct: 1008 PDVVIFENFSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLR 1067
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
LR I+LVSQEP LFAGTIR+NI+YG + E+EI +AA ANAH+FI+S +GYDT
Sbjct: 1068 SLRKYISLVSQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDT 1127
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
CG++GVQLSGGQKQRIA+ARAVLKNP +LLLDEATSALDS SE +VQ+ALE++MVGRT
Sbjct: 1128 NCGDKGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTS 1187
Query: 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+++AHRLSTIQ D IVV+ GK+VE GT SSLL G G Y+SL +Q
Sbjct: 1188 IMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQ 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1236 bits (3198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1253 (49%), Positives = 870/1253 (69%), Gaps = 61/1253 (4%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDI-------S 53
G+ +F +A+ D +L+ G +G++GDG +TP+ +I +++N++G S +
Sbjct: 4 FGSVRSIFMHANSVDLVLMGLGLIGAVGDGFITPIIFFITGLLLNDIGDSSFGDKTFMHA 63
Query: 54 ISIEAVDKVPE----------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSS 103
I AV + +G CWTRT ERQASR+R +YL++VLRQ+VG+FD +S+
Sbjct: 64 IMKNAVALLYVAGASLVICFVEGYCWTRTGERQASRMREKYLRAVLRQDVGYFDLHVTST 123
Query: 104 STFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFI 163
S V+T+++SD IQD ++EK+PN L ++F+ S +V F++ WRL + PF +L +
Sbjct: 124 S--DVITSVSSDTLVIQDVLSEKLPNFLMSASAFVASYIVGFIMLWRLTIVGFPFFILLL 181
Query: 164 VPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223
+PG++ G+ L ++ + ++ Y AG IAEQAIS +RTVY+F E + + +FS AL +++
Sbjct: 182 IPGLMCGRALINISRKIREEYNEAGSIAEQAISLVRTVYAFGSERKMISKFSAALEGSVK 241
Query: 224 LGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMS 283
LG++QG+ KG+ +GS G+TY W F +W GS +V G KGG +F IC GG +
Sbjct: 242 LGLRQGIAKGIAIGSNGVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYGGTSLGR 301
Query: 284 ALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT 343
L NL + S+A A RI E+I RVP I+S++ G+ L ++GE++FK V F Y +RP+T
Sbjct: 302 GLSNLKYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMYSSRPET 361
Query: 344 P-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
P ++ LVG SGSGKSTVISLL+RFYDP+ G IL+DG IKKLQ+KWLR
Sbjct: 362 PIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLR 421
Query: 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450
SQMGLV+QEP LF+TSI+ENIL GK AS + VV+AA+++N HDFI + GY+T+VG+
Sbjct: 422 SQMGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGER 481
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
GVQ+SGGQKQRI+IARA+I+ P +LLLDEATSALD+ESER+VQEALD A+ GRT I+IAH
Sbjct: 482 GVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAH 541
Query: 511 RLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYN 570
RLSTIR D+I V ++G+++E+GSH+ LM+ +G+ Y+ +V+LQ M NE
Sbjct: 542 RLSTIRNVDVICVFKNGQIVETGSHEELMENVDGQ---YTSLVRLQ--IMENE------- 589
Query: 571 PTKSKSHHSLMSAQTPHTPINEGSSYQNS-PIYPLSPTFSISMTGSFQMHSVENQNDKNF 629
+S + S+ + + N+ Y + I S F+ S + S+ +F
Sbjct: 590 --ESNDNVSVSMREGQFSNFNKDVKYSSRLSIQSRSSLFATSSIDTNLAGSIPKDKKPSF 647
Query: 630 HDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKL 689
RL+ M+ EWK L GCL + GA++P YAY GS+VS YF+ ++
Sbjct: 648 K----------RLMAMNKPEWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEM 697
Query: 690 KSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDE 749
K +TR+Y L+F+GLA L + ++IQ Y+FA MGE+L +R+RE +L K+ TFE+ WFD+DE
Sbjct: 698 KEKTRIYVLLFVGLAVLCFLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDE 757
Query: 750 NTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLN 809
N+S +IC+RLA +A++VRS + +R+SLL+Q + S+A TL L ++W+++IVMIA+QP+
Sbjct: 758 NSSGSICSRLAKDANVVRSLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVV 817
Query: 810 IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPK 869
+GCFY++ +++KS+S+KA K+Q E S+LA+EA +N RTITAFSSQ+RIL L + +GP+
Sbjct: 818 VGCFYTQRIVLKSISKKAIKAQDESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQ 877
Query: 870 KESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNI 929
+E+I+QSW +GI L +S+ L T + L +WY R++ G ++ K F+ F L +STG+ I
Sbjct: 878 RENIRQSWLAGIVLATSRSLMTCTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVI 937
Query: 930 ADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989
ADAG+MT D+AKGS A+ ++F +LDR + I+PE P + + KG I+ NV F+YP+
Sbjct: 938 ADAGAMTMDLAKGSDAVGSVFAVLDRYTNIEPEKPDGF--VPQNIKGQIKFVNVDFAYPT 995
Query: 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049
RPD +IFK ++ I+ GK+ A+VG SGSGKSTIIGLIERFYDP G V +D R+I+SY+L
Sbjct: 996 RPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHL 1055
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYD 1107
R LR I LVSQEP LFAGTIR+NI+YG + E+EI +AA ANAH+FI + DGYD
Sbjct: 1056 RSLRQHIGLVSQEPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYD 1115
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRT 1167
TYCG+RGVQLSGGQKQRIA+ARAVLKNP +LLLDEATSALD+ SE +VQ+AL ++MVGRT
Sbjct: 1116 TYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRT 1175
Query: 1168 CVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220
VV+AHRLSTIQ D I V+ GKVVE GT SSLL+ G G Y+SL+ +Q +R
Sbjct: 1176 SVVIAHRLSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQRTR 1228
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ8|AB16B_ARATH ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1219 bits (3154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/1251 (49%), Positives = 863/1251 (68%), Gaps = 68/1251 (5%)
Query: 2 GTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS-------I 54
G+ +F +ADG D +L+ G +G++GDG +TP+ +I +M++N+ G+ + I
Sbjct: 5 GSMRSIFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDFGSFSFNDETFMQPI 64
Query: 55 SIEAVDKVPE----------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSS 104
S A+ + +G CWTRT ERQA+++R YL++VLRQ+VG+FD +S+S
Sbjct: 65 SKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLHVTSTS 124
Query: 105 TFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIV 164
++T+++SD+ IQD ++EK+PN L + ++F+GS +V F+L WRL + PF +L ++
Sbjct: 125 --DIITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFIILLLI 182
Query: 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224
PG+++G+ L + + ++ Y AG IAEQAISS+RTVY+FV E + +++FS AL+ +++L
Sbjct: 183 PGLMYGRALIGISRKIREEYNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQGSVKL 242
Query: 225 GIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSA 284
G++QGL KG+ +GS G+ Y W F +W GS +V G KGG V +C GG + A
Sbjct: 243 GLRQGLAKGIAIGSNGIVYAIWGFLTWYGSRMVMNYGYKGGTVSTVTVCVTFGGTALGQA 302
Query: 285 LPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT- 343
L NL + S+A A RI +MI RVP I+S++ G L +RGE+EF +V YP+RP+T
Sbjct: 303 LSNLKYFSEAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSRPETL 362
Query: 344 ------------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
T+ LVG SGSGKSTVISLL+RFYDP +G+IL+D I +Q+KWLRS
Sbjct: 363 IFDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRS 422
Query: 392 QMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451
QMG+V+QEP LF+TSIKENIL GK AS + VV+AA+A+N H+FI + GY+T+VG+ G
Sbjct: 423 QMGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERG 482
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
V +SGGQKQRIAIARALI+ P ILLLDEATSALD ESER+VQEALD AS GRT I+IAHR
Sbjct: 483 VHMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHR 542
Query: 512 LSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNP 571
LSTIR AD+I VL +G ++E+GSHD LM+++ G Y+ +V+LQQ M+NE
Sbjct: 543 LSTIRNADIICVLHNGCIVETGSHDKLMEID----GKYTSLVRLQQ--MKNE-------- 588
Query: 572 TKSKSHHSLMSAQTPHTPINEG--SSYQNSPIYPLSP-TFSISMTGSFQMHSVENQNDKN 628
S + EG SS +N Y +P + SM+ S V N +D
Sbjct: 589 ---------ESCDNTSVGVKEGRVSSLRNDLDY--NPRDLAHSMSSSI----VTNLSDSI 633
Query: 629 FHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSK 688
D S RL+ M+ EWK L GCL ++ GA+ P YAY G ++S +F+ + +
Sbjct: 634 PQDKKPLVPSFKRLMAMNRPEWKHALCGCLSASLGGAVQPIYAYSSGLMISVFFLTNHEQ 693
Query: 689 LKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQD 748
+K TR+Y L+F GLA T ++ Q Y+F+ MGE+L +R+RE+ML KI TFE+ WFD++
Sbjct: 694 IKENTRIYVLLFFGLALFTFFTSISQQYSFSYMGEYLTKRIREQMLSKILTFEVNWFDEE 753
Query: 749 ENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPL 808
EN+S AIC+RLA +A++VRS + +RMSLL+Q + +A T+ L++ WR IVMI+VQP+
Sbjct: 754 ENSSGAICSRLAKDANVVRSLVGERMSLLVQTISTVMVACTIGLVIAWRFTIVMISVQPV 813
Query: 809 NIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGP 868
I C+Y + VL+K+MS+KA +Q E S+LA+EA +N RTIT FSSQ+RI+ L +GP
Sbjct: 814 IIVCYYIQRVLLKNMSKKAIIAQDESSKLAAEAVSNIRTITTFSSQERIMKLLERVQEGP 873
Query: 869 KKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKN 928
++ES +QSW +GI L ++Q L T + L FWY G+++ G + K F+ F + +TG+
Sbjct: 874 RRESARQSWLAGIMLGTTQSLITCTSALNFWYGGKLIADGKMVSKAFFELFLIFKTTGRA 933
Query: 929 IADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYP 988
IA+AG+MT+D+AKGS+++ ++FT+LDR++ I+PE+P I E KG I NV F+YP
Sbjct: 934 IAEAGTMTTDLAKGSNSVDSVFTVLDRRTTIEPENPDGY--ILEKIKGQITFLNVDFAYP 991
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
+RP+ +IF +++I GK+ A+VG S SGKST+IGLIERFYDP G V +D R+I+SY+
Sbjct: 992 TRPNMVIFNNFSIEIHEGKSTAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYH 1051
Query: 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGK--EVATEAEIRKAAVLANAHEFISSTEDGY 1106
LR LR ++LVSQEPTLFAGTIR+NI+YG+ E+EI +A ANAHEFI+S DGY
Sbjct: 1052 LRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGY 1111
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166
DTYCG+RGVQLSGGQKQRIA+AR +LKNP ILLLDEATSALDS SE +VQ+ALE +MVG+
Sbjct: 1112 DTYCGDRGVQLSGGQKQRIAIARTILKNPSILLLDEATSALDSQSERVVQDALEHVMVGK 1171
Query: 1167 TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
T VV+AHRLSTIQ D I V+ GKVVE GT +SLL+ G G+Y+SL+ +Q
Sbjct: 1172 TSVVIAHRLSTIQNCDTIAVLDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LHK4|AB8B_ARATH Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/1238 (44%), Positives = 805/1238 (65%), Gaps = 70/1238 (5%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISI----EAVDKV 62
+FR+AD D +L++ G+VG+IGDGM T +++ +S ++N LG S + S E + K
Sbjct: 21 IFRFADWIDIVLMVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEEIQKC 80
Query: 63 P---------------EKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQ 107
+G CW++T+ERQ +IR YL++VLRQEV FFD+ S+S +
Sbjct: 81 SLYFVYLGLAILGVAFMEGYCWSKTSERQVMKIRRTYLEAVLRQEVSFFDSDISTS---E 137
Query: 108 VVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGI 167
++ I++D IQ ++EK+P L H++ FI ++ + SWRL + A+P +L ++PG+
Sbjct: 138 IIHTISTDTSLIQQLLSEKVPIFLMHISVFITGLVFSAYFSWRLTVVAIPTLVLLLIPGL 197
Query: 168 VFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIK 227
++GK L L + Y A I EQA+SSI+T+ SF E Q +K++S L ++ +LG+K
Sbjct: 198 IYGKYLVHLSKKSFKEYTKANSIVEQALSSIKTILSFTAETQIIKKYSEVLERHKKLGLK 257
Query: 228 QGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPN 287
QGL KGL +GS G+++ WAF +W GS LV + E GG ++ AGI +LGG+ + +AL
Sbjct: 258 QGLAKGLAVGSSGISFTIWAFLAWYGSRLVMHKQETGGRIYAAGISFVLGGISLGTALTE 317
Query: 288 LSFISQATTAATRIFEMIDRVPVINSEDEIGKTLA--YLRGEIEFKDVDFSYPTRPDT-- 343
+ + S+A+ AA RI IDR+ I+ ED + ++G +EF+ V Y +RP+T
Sbjct: 318 IRYFSEASVAAARICSRIDRISEIDGEDTKKGFIPGEKMKGRVEFERVTLVYLSRPETII 377
Query: 344 -----------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392
++ L+G+SGSGKSTVI+LL+RFYDP +G + +DG IK LQLKW+R
Sbjct: 378 LKDFTLTVDVGQSVALMGASGSGKSTVIALLQRFYDPCEGFVRIDGFDIKTLQLKWMRQH 437
Query: 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
+G+V+Q+ LF TSI EN++ GK ASM+ V+ AA+AAN H FI +L +GY+T +G G
Sbjct: 438 IGVVSQDHALFGTSIMENLMFGKNKASMDEVISAAKAANAHGFITQLPNGYDTHIGNRGA 497
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
LSGGQKQRIAIARA+IR+P ILLLDEATSALD ESE ++Q ALDQ + GRT +++AH+L
Sbjct: 498 LLSGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNALDQVAAGRTTLVVAHKL 557
Query: 513 STIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPT 572
ST+R A++I +L++G V E GSH+ LM NN Y+K+V+LQ+
Sbjct: 558 STVRGANIIAMLENGSVRELGSHEDLMTKNN----HYAKLVKLQRQF------------- 600
Query: 573 KSKSHHSLMSAQTPHTPINEGSSYQNSPIY---PLSPTFSISMTGSFQMHSVENQNDKNF 629
H + + I + S NS I SP +S ++E+ +
Sbjct: 601 -GHEHQQDLQDRVNSPEIQQRWSTMNSVIRLSNRSSPDLIVSPI------TLESNHTTKI 653
Query: 630 HDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKL 689
++N S +S RLL + EWK +L+GC+ + GAI P YA +G ++SA+F K ++
Sbjct: 654 NENIPS-TSFTRLLPFVSPEWKSSLVGCISATTFGAIQPVYALSIGGMISAFFAKSSQEM 712
Query: 690 KSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDE 749
+ + +Y LIF+ L FL++ NL+QHY+FA MGE L+QR+R KMLEKIFTFE WFD +E
Sbjct: 713 QDKIHIYSLIFISLTFLSITLNLLQHYSFAKMGERLMQRLRLKMLEKIFTFEPAWFDVEE 772
Query: 750 NTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLN 809
N ++ IC+RL NE +V+S +ADR+SLL+Q ++A + LL++W++A+VMIAVQPL+
Sbjct: 773 NFTSEICSRLNNEVSIVKSLVADRISLLVQTISGVTIAMIIGLLISWKLALVMIAVQPLS 832
Query: 810 IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPK 869
I CFY++ VL+ +S +Q+ SQ+ASEA NH+ +T+ S +I+++F K
Sbjct: 833 ILCFYTKKVLLSKISNNYAYAQNRSSQIASEAIYNHKIVTSLGSTKKIIEIFDNAQYEAK 892
Query: 870 KESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNI 929
++ K +W +G G+ S+Q LT + L FWY G ++ +G +S +F+ FF+L+STGK I
Sbjct: 893 RKGRKAAWLAGFGMGSAQCLTFLTWALDFWYGGVLVQKGEISAGDVFKTFFVLVSTGKVI 952
Query: 930 ADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989
A+AGSMTSD+AKG++AI ++F ILDR S E+ E + +G IELKN+ FSYP+
Sbjct: 953 AEAGSMTSDLAKGTAAISSVFNILDRPS--SHENTNHGEKM-GTIQGRIELKNIDFSYPN 1009
Query: 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049
RP ++ + +L I+ G ++ LVG SG GKST+I LI+RFYD + G V +D N++ N+
Sbjct: 1010 RPSILVLRDFSLDIKPGTSIGLVGTSGCGKSTVIALIQRFYDVEIGCVKIDSENLRDINI 1069
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY 1109
+ R ALVSQEP +++G+I+ NI+ G+ ATE E+ +AA ANAH+FIS+ E GY T
Sbjct: 1070 KWYRKHTALVSQEPVVYSGSIQDNIILGRPEATEDEVVEAAKAANAHDFISAMEKGYKTE 1129
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR--T 1167
CGERGVQLSGGQKQRIA+ARA L++P+ILLLDE TS+LDS SE VQ+AL ++M R T
Sbjct: 1130 CGERGVQLSGGQKQRIAIARAFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMASRNMT 1189
Query: 1168 CVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMG 1205
VVVAHRL+T++ D I +I +G V+E G+ L ++G
Sbjct: 1190 TVVVAHRLNTLKNLDCIALIVDGTVIETGSYDHLKNIG 1227
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1246 (43%), Positives = 782/1246 (62%), Gaps = 49/1246 (3%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEKG 66
LFR+ADG D +L+ G+VG+ G PL + + ++N G++ ++ + +++V +
Sbjct: 32 LFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVE-KMMEEVLKYA 90
Query: 67 M------------------CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQV 108
+ CW + ERQ +++R++YL++ L Q++ FFD + +S V
Sbjct: 91 LYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTS---DV 147
Query: 109 VTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIV 168
V I +DA +QDA++EK+ N + ++ +F+ +V F W+LAL L L V G +
Sbjct: 148 VFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGI 207
Query: 169 FGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQ 228
L L + +++ AG I EQ + IR V +FVGE + + +S AL+ +LG K
Sbjct: 208 HTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKT 267
Query: 229 GLTKGLLLG-SMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPN 287
GL KG+ LG + + + +A W G LV GGL ++GG+ + + P+
Sbjct: 268 GLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPS 327
Query: 288 LSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP--- 344
++ ++A AA +IF +ID P I E G L + G +E K+VDFSYP+RPD
Sbjct: 328 MAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILN 387
Query: 345 ----------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394
TI LVGSSGSGKSTV+SL+ERFYDP G +LLDG +K L+L+WLR Q+G
Sbjct: 388 NFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIG 447
Query: 395 LVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQL 454
LV+QEP LF+TSIKENIL+G+P A + +AA+ AN H FI+KL DG++T+VG+ G+QL
Sbjct: 448 LVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQL 507
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST 514
SGGQKQRIAIARA++++P ILLLDEATSALD+ESE++VQEALD+ GRT +IIAHRLST
Sbjct: 508 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLST 567
Query: 515 IRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKS 574
IRKADL+ VLQ G V E G+HD L + GE G Y+K++++Q++A +E A + + +
Sbjct: 568 IRKADLVAVLQQGSVSEIGTHDELF--SKGENGVYAKLIKMQEAA--HETAMSNARKSSA 623
Query: 575 KSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSIS-MTGSFQMHSVEN-QNDK-NFHD 631
+ + S +P N SSY SP FS S + S S N +N+K F D
Sbjct: 624 RPSSARNSVSSPIMTRN--SSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKD 681
Query: 632 NSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKS 691
++S RL +M++ EWK LLG +GS G++ +AY L +V+S Y+ D +
Sbjct: 682 QANS---FWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIK 738
Query: 692 ETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENT 751
+ YC + +GL+ L+ N +QH + I+GE+L +RVREKML + E+ WFDQ+EN
Sbjct: 739 QIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENE 798
Query: 752 SAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIG 811
SA I ARLA +A+ VRS I DR+S+++Q +A T ++ WR+A+V++AV P+ +
Sbjct: 799 SARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVA 858
Query: 812 CFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKE 871
+ + M S + + ++G+QLA EA N RT+ AF+S+ +I+ L+ ++ P K
Sbjct: 859 ATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKR 918
Query: 872 SIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIAD 931
+ +G G +QF AS L WYA ++ G+ + + F +LM + A+
Sbjct: 919 CFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAE 978
Query: 932 AGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRP 991
++ D KG A+R++F +LDRK+EI+P+DP + + + +G +ELK++ FSYPSRP
Sbjct: 979 TLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTP-VPDRLRGEVELKHIDFSYPSRP 1037
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051
D IF+ L+L+ AGKT+ALVG SG GKS++I LI+RFY+P SG VM+D ++I+ YNL+
Sbjct: 1038 DIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKA 1097
Query: 1052 LRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
+R IA+V QEP LF TI +NI YG E ATEAEI +AA LA+AH+FIS+ +GY TY G
Sbjct: 1098 IRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVG 1157
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVV 1171
ERGVQLSGGQKQRIA+ARA+++ I+LLDEATSALD+ SE VQEAL++ GRT +VV
Sbjct: 1158 ERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVV 1217
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AHRLSTI+ A I VI +GKV EQG+ S LL G Y +I++Q
Sbjct: 1218 AHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1252 (42%), Positives = 791/1252 (63%), Gaps = 67/1252 (5%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEKG 66
LF +AD D LL+ G++G+I G P+ + ++N G + + + + V +V
Sbjct: 29 LFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLH-QMVHEVSRYS 87
Query: 67 M------------------CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQV 108
+ CW + ERQ + +R +YL++VL+Q+VGFFD + + T +
Sbjct: 88 LYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD---TDARTGDI 144
Query: 109 VTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIV 168
V ++++D +QDA++EK+ N + +L++F+ ++V F+ +W+LAL ++ ++PGI
Sbjct: 145 VFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVA-----VIPGIA 199
Query: 169 FG-----KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223
F L + ++ +++Y AG IAEQAI+ +RTVYS+VGE + L +S A++ ++
Sbjct: 200 FAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLK 259
Query: 224 LGIKQGLTKGLLLG-SMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIM 282
LG K G+ KGL LG + G+ +WA W V + GG F A I+GG+ +
Sbjct: 260 LGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLG 319
Query: 283 SALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPD 342
+ NL S+ A ++ E+I++ P I + GK L + G IEFKDV FSYP+RPD
Sbjct: 320 QSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPD 379
Query: 343 T-------------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
T+ +VG SGSGKSTV+SL+ERFYDP G ILLDG +IK LQLK+L
Sbjct: 380 VMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFL 439
Query: 390 RSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449
R Q+GLVNQEP LF+T+I ENIL GKP A+M V AA AAN H FI L GY+T+VG+
Sbjct: 440 REQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGE 499
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIA 509
GVQLSGGQKQRIAIARA+++DPKILLLDEATSALDA SE IVQEALD+ GRT +++A
Sbjct: 500 RGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVA 559
Query: 510 HRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSY 569
HRL TIR D I V+Q G+V+E+G+H+ L+ + GAY+ +++ Q+ + +
Sbjct: 560 HRLCTIRNVDSIAVIQQGQVVETGTHEELI----AKSGAYASLIRFQEMVGTRDFS---- 611
Query: 570 NPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNF 629
NP+ ++ + +S H+ + S ++ + LS ++S G +M S + K
Sbjct: 612 NPSTRRTRSTRLS----HSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRK-- 665
Query: 630 HDNSHSPSSLL-RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSK 688
+ +P + RLL++++ EW +++G +GS SG I P++A + +++ ++ D
Sbjct: 666 ---TRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDS 722
Query: 689 LKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQD 748
++ +T+ Y I++G + A LIQHY F+IMGE+L RVR ML I E+GWFD+D
Sbjct: 723 MERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDED 782
Query: 749 ENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPL 808
E+ S+ I ARLA +A V+S IA+R+S+++Q S ++ ++ +V WRV+++++ PL
Sbjct: 783 EHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPL 842
Query: 809 NIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGP 868
+ +++ + +K + K+ ++ S +A E +N RT+ AF++Q +IL LF ++ P
Sbjct: 843 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVP 902
Query: 869 KKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKN 928
+K S+ +S SG SQ S L WY ++++G+ + ++ + F +L+ T +
Sbjct: 903 QKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANS 962
Query: 929 IADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYP 988
+A+ S+ +I +G A+ ++F++LDR++ IDP+ A D E +G IE ++V F+YP
Sbjct: 963 VAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPD--DADADPVETIRGDIEFRHVDFAYP 1020
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
SRPD M+F+ L+I AG + ALVG SGSGKS++I +IERFYDP +G VM+D ++I+ N
Sbjct: 1021 SRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLN 1080
Query: 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
L+ LR I LV QEP LFA TI NI YGK+ ATE+E+ AA ANAH FIS +GY T
Sbjct: 1081 LKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKT 1140
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
GERGVQLSGGQKQRIA+ARAVLKNP +LLLDEATSALD+ SE ++QEALE++M GRT
Sbjct: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTT 1200
Query: 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220
VVVAHRLSTI+ D I VI++G++VEQG+ S L+S GAY L+++Q R
Sbjct: 1201 VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPE-GAYSRLLQLQTHR 1251
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/1251 (41%), Positives = 761/1251 (60%), Gaps = 55/1251 (4%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISI-EAVDKVPEK 65
LF +AD D LL++ G++G+IG+GM P + +I+ G + + I + V KV K
Sbjct: 46 LFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVVSKVCLK 105
Query: 66 GM---------------CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVT 110
+ CW T ERQA+RIR YLK++LRQ++GFFD +T+ T +VV
Sbjct: 106 FVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETN---TGEVVG 162
Query: 111 NITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFG 170
++ D IQDA+ EK+ + +++F+G ++AF+ W L L L L + G
Sbjct: 163 RMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAAMA 222
Query: 171 KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230
++ ++G+ AY A + EQ I SIRTV SF GE Q + + + + I+QG
Sbjct: 223 LIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQGF 282
Query: 231 TKGLLLGSMGMTY-GAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLS 289
+ GL LG M + ++A W G ++ E+G GG V I + G + + P ++
Sbjct: 283 STGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPCVT 342
Query: 290 FISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT------ 343
+ AA ++FE I R P+I++ D GK L +RG+IE KDV FSYP RPD
Sbjct: 343 AFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFDGF 402
Query: 344 -------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396
T LVG SGSGKSTVISL+ERFYDP G +L+DG +K+ QLKW+RS++GLV
Sbjct: 403 SLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLV 462
Query: 397 NQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+QEP+LFS+SI ENI GK A++E + A + AN FI KL G +T VG+ G QLSG
Sbjct: 463 SQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSG 522
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIR 516
GQKQRIAIARA+++DP+ILLLDEATSALDAESER+VQEALD+ RT +I+AHRLST+R
Sbjct: 523 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVR 582
Query: 517 KADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKS 576
AD+I V+ G+++E GSH L++ + GAYS++++LQ+ + +V + + S
Sbjct: 583 NADMIAVIHRGKMVEKGSHSELLKDSE---GAYSQLIRLQE--INKDVKTSELSSGSSFR 637
Query: 577 HHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSP 636
+ +L + + + S + + + L+ + GS HS D+ S P
Sbjct: 638 NSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDL---GS---HSQRAGQDET-GTASQEP 690
Query: 637 SSLLRLLRMSAI---EWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSET 693
+ L R++A+ E LLG + +A +GAI+P + + V+ A+F K +LK ++
Sbjct: 691 LPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFF-KPAHELKRDS 749
Query: 694 RLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSA 753
R + +IF+ L +LI + Q Y FA+ G L++R+R EK E+ WFD+ +N+S
Sbjct: 750 RFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSG 809
Query: 754 AICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCF 813
+ ARL+ +A L+R+ + D +SL +Q SA+ ++ +W +A++++ + PL
Sbjct: 810 TMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGING 869
Query: 814 YSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESI 873
+ + MK S AK E SQ+A++A + RT+ +F ++++++ ++++ +GP K+ I
Sbjct: 870 FVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGI 929
Query: 874 KQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAG 933
KQ + SG+G S F+ +F+ R++ G + +FQ FF L I+ +
Sbjct: 930 KQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSS 989
Query: 934 SMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQ 993
+ D +K A +IF I+DRKS+ID D + + E KG IEL+++ F+YP+RPD
Sbjct: 990 TFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGT--VLENVKGDIELRHLSFTYPARPDI 1047
Query: 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053
IF+ L L I AGKTVALVG+SGSGKST+I L++RFYDP SG + +D +K L+ LR
Sbjct: 1048 QIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWLR 1107
Query: 1054 SCIALVSQEPTLFAGTIRQNIVYGK---EVATEAEIRKAAVLANAHEFISSTEDGYDTYC 1110
+ LV QEP LF TIR NI YGK E ATE+EI AA LANAH+FISS + GYDT
Sbjct: 1108 QQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVV 1167
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVV 1170
GERG+QLSGGQKQR+A+ARA++K P ILLLDEATSALD+ SE +VQ+AL+++MV RT +V
Sbjct: 1168 GERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIV 1227
Query: 1171 VAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221
VAHRLSTI+ AD I V+KNG + E+GT +L+ + GG Y SL+++ + S
Sbjct: 1228 VAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKI-EGGVYASLVQLHMTAS 1277
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1224 | ||||||
| 147867379 | 1245 | hypothetical protein VITISV_012787 [Viti | 0.993 | 0.976 | 0.717 | 0.0 | |
| 359473162 | 1245 | PREDICTED: ABC transporter B family memb | 0.993 | 0.976 | 0.715 | 0.0 | |
| 255547984 | 1271 | multidrug resistance protein 1, 2, putat | 0.994 | 0.957 | 0.698 | 0.0 | |
| 359493766 | 1252 | PREDICTED: ABC transporter B family memb | 0.996 | 0.974 | 0.645 | 0.0 | |
| 356569217 | 1243 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.982 | 0.967 | 0.649 | 0.0 | |
| 449435440 | 1251 | PREDICTED: putative multidrug resistance | 0.986 | 0.964 | 0.660 | 0.0 | |
| 356545153 | 1243 | PREDICTED: putative multidrug resistance | 0.986 | 0.971 | 0.630 | 0.0 | |
| 356515002 | 1243 | PREDICTED: putative multidrug resistance | 0.986 | 0.971 | 0.631 | 0.0 | |
| 224124238 | 1251 | multidrug/pheromone exporter, MDR family | 0.993 | 0.972 | 0.628 | 0.0 | |
| 357474799 | 1248 | ABC transporter B family member [Medicag | 0.977 | 0.959 | 0.613 | 0.0 |
| >gi|147867379|emb|CAN81180.1| hypothetical protein VITISV_012787 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1805 bits (4675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 897/1251 (71%), Positives = 1051/1251 (84%), Gaps = 35/1251 (2%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVD 60
MG KGG+FRYA+G D LL+L GT+GSIGDG+M+PLTM +LS VINE G D S SI+ VD
Sbjct: 1 MGRKGGMFRYANGIDMLLMLLGTLGSIGDGLMSPLTMLVLSDVINEYGDVDPSFSIQVVD 60
Query: 61 KVPE---------------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSST 105
K +G+CWTRT+ERQ SR+RMEYLKSVLRQEVGFFD Q +SS+T
Sbjct: 61 KHSLWLFCVAIGVGISAFIEGICWTRTSERQTSRMRMEYLKSVLRQEVGFFDKQAASSTT 120
Query: 106 FQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVP 165
FQV++ I+SDAHSIQD ++EKIPNCLAHL+SFI ++VAF LSWRLA+AALPFSL+FI+P
Sbjct: 121 FQVISTISSDAHSIQDVISEKIPNCLAHLSSFIFCLIVAFFLSWRLAVAALPFSLMFIIP 180
Query: 166 GIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELG 225
G+ FGK++ +LG + K AY AG IAEQAISS+RTVYS+ GE QTL RFS AL+K+M LG
Sbjct: 181 GVGFGKLMMNLGMKMKVAYGVAGEIAEQAISSVRTVYSYAGECQTLDRFSHALQKSMTLG 240
Query: 226 IKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSAL 285
IK G TKGLL+GSMG Y AWAFQ+WVG++LVTE+GE GG VF++G+C ILGG+ IM+AL
Sbjct: 241 IKLGFTKGLLIGSMGTIYAAWAFQAWVGTILVTEKGEGGGSVFISGVCVILGGLSIMNAL 300
Query: 286 PNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP- 344
PNLSFI +AT AATRIFE+ DR+P I+SE+E GK LAY+RGEIEFK+V+FSYP+RP T
Sbjct: 301 PNLSFILEATXAATRIFEITDRIPEIDSENEKGKILAYVRGEIEFKEVEFSYPSRPTTKI 360
Query: 345 ------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392
T+GLVG SGSGKST+ISLLERFYDPVKGNILLDGHKIK+LQLKWLRSQ
Sbjct: 361 LQGFNLKVKAGKTVGLVGGSGSGKSTIISLLERFYDPVKGNILLDGHKIKRLQLKWLRSQ 420
Query: 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
+GLVNQEP+LF+TSIKENIL GK GA +E VV+AA+AAN H FI KL GYET+VGQFG+
Sbjct: 421 IGLVNQEPVLFATSIKENILFGKEGAPLELVVRAAKAANAHGFISKLPQGYETQVGQFGI 480
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
QLSGGQKQRIAIARALIRDP+ILLLDEATSALDAESERIVQEALDQAS GRT I+IAHRL
Sbjct: 481 QLSGGQKQRIAIARALIRDPRILLLDEATSALDAESERIVQEALDQASLGRTTIMIAHRL 540
Query: 513 STIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPT 572
STI KAD+I VLQSGRV+ESGSH+ L+QMNNG+GGAYS+M+QLQQSAM++ S Y P
Sbjct: 541 STIHKADIIVVLQSGRVVESGSHNDLIQMNNGQGGAYSRMLQLQQSAMQSN--SSFYRPA 598
Query: 573 KSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDN 632
SH MSAQTP ++ SS +SP + SP FSISM S Q+HS + + +N +
Sbjct: 599 DGTSHSRTMSAQTP---VSVTSSLPSSPAFLFSPAFSISMAPSIQLHSYDESDSENLEKS 655
Query: 633 SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692
S+ P RL++M+ EWKR LLGC+G+A GAI P++AYCLG+VVS YF+KDDS +KS+
Sbjct: 656 SYPPWQW-RLVKMNLPEWKRGLLGCIGAAVFGAIQPTHAYCLGTVVSVYFLKDDSSIKSQ 714
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
T+ YC IFLGLA L+ IANL+QHYNFAIMGE L++RVREKML K+ TFEIGWFDQDENTS
Sbjct: 715 TKFYCFIFLGLAVLSFIANLLQHYNFAIMGERLIKRVREKMLGKVLTFEIGWFDQDENTS 774
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGC 812
AAICARLA EA++VRS I DR+SLL+QVFFSASLA+ + L+VTWR+AIVMIA+QPL IG
Sbjct: 775 AAICARLATEANMVRSLIGDRISLLVQVFFSASLAFMVGLIVTWRLAIVMIAMQPLLIGS 834
Query: 813 FYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872
FYS+SVLMKSMSEKA K+Q+EGSQLASEA NHRTITAFSSQ RIL LF TM+GPKKE+
Sbjct: 835 FYSKSVLMKSMSEKALKAQNEGSQLASEAAVNHRTITAFSSQQRILGLFGATMEGPKKEN 894
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADA 932
IKQSW SG GLFSSQFLTTASI LT+WY GR+M GL++PK LFQAFF+LMSTGKNIADA
Sbjct: 895 IKQSWXSGFGLFSSQFLTTASIALTYWYGGRLMIHGLITPKHLFQAFFILMSTGKNIADA 954
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
GSMTSD+AKGS A+R++F ILDR+S+I+PEDP+ + + KG IELKNVFFSYP+RPD
Sbjct: 955 GSMTSDLAKGSRAMRSVFAILDRQSKIEPEDPERIM-VNKAIKGCIELKNVFFSYPTRPD 1013
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
QMIFKGL+L+IEAGKT ALVG+SGSGKST+IGLIERFYDP +GSV +D+ +I+SYNLRKL
Sbjct: 1014 QMIFKGLSLRIEAGKTAALVGESGSGKSTVIGLIERFYDPLNGSVQIDQHDIRSYNLRKL 1073
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
RS IALVSQEP LFAGTI +NIVYGKE ATEAEIR+AA+LANAHEFISS +DGY TYCGE
Sbjct: 1074 RSHIALVSQEPILFAGTIYENIVYGKENATEAEIRRAALLANAHEFISSMKDGYKTYCGE 1133
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RGVQLSGGQKQRIALARA+LKNP I+LLDEATSALDS SENLVQEALEKMMVGRTCVVVA
Sbjct: 1134 RGVQLSGGQKQRIALARAILKNPAIILLDEATSALDSMSENLVQEALEKMMVGRTCVVVA 1193
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRSPY 1223
HRLSTIQK+D I VIKNGKVVEQG+ S LL++G+GG YYSLIK+Q + SPY
Sbjct: 1194 HRLSTIQKSDTIAVIKNGKVVEQGSHSDLLAVGHGGTYYSLIKLQGNHSPY 1244
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473162|ref|XP_002282137.2| PREDICTED: ABC transporter B family member 15-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1803 bits (4671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 895/1251 (71%), Positives = 1052/1251 (84%), Gaps = 35/1251 (2%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVD 60
MG KGG+FRYA+G D LL+L GT+GSIGDG+M+PLTM +LS VIN+ G D S SI+ VD
Sbjct: 1 MGRKGGMFRYANGIDMLLMLLGTLGSIGDGLMSPLTMLVLSDVINKYGDVDPSFSIQVVD 60
Query: 61 KVPE---------------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSST 105
K +G+CWTRT+ERQ SR+RMEYLKSVLRQEVGFFD Q +SS+T
Sbjct: 61 KHSLWLFCVAIGVGISAFIEGICWTRTSERQTSRMRMEYLKSVLRQEVGFFDKQAASSTT 120
Query: 106 FQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVP 165
FQV++ I+SDAHSIQD ++EKIPNCLAHL+SFI ++VAF LSWRLA+AALPFSL+FI+P
Sbjct: 121 FQVISTISSDAHSIQDVISEKIPNCLAHLSSFIFCLIVAFFLSWRLAVAALPFSLMFIIP 180
Query: 166 GIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELG 225
G+ FGK++ +LG + K AY AG IAEQAISS+RTVYS+ GE QTL RFS AL+K+M+LG
Sbjct: 181 GVGFGKLMMNLGMKMKVAYGVAGEIAEQAISSVRTVYSYAGECQTLDRFSHALQKSMKLG 240
Query: 226 IKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSAL 285
IK G TKGLL+GSMG Y AWAFQ+WVG++LVTE+GE GG VF++G+C ILGG+ IM+AL
Sbjct: 241 IKLGFTKGLLIGSMGTIYAAWAFQAWVGTILVTEKGEGGGSVFISGVCVILGGLSIMNAL 300
Query: 286 PNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP- 344
PNLSFI +AT AATRIFE+ DR+P I+SE+E GK LAY+RGEIEFK+V+FSYP+RP T
Sbjct: 301 PNLSFILEATAAATRIFEITDRIPEIDSENEKGKILAYVRGEIEFKEVEFSYPSRPTTKI 360
Query: 345 ------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392
T+GLVG SGSGKST+ISLLERFYDPVKGNILLDGHKIK+LQLKWLRSQ
Sbjct: 361 LQGFNLKVKAGKTVGLVGGSGSGKSTIISLLERFYDPVKGNILLDGHKIKRLQLKWLRSQ 420
Query: 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
+GLVNQEP+LF+TSIKENIL GK GA +E VV+AA+AAN H FI KL GYET+VGQFG+
Sbjct: 421 IGLVNQEPVLFATSIKENILFGKEGAPLELVVRAAKAANAHGFISKLPQGYETQVGQFGI 480
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
QLSGGQKQRIAIARALIRDP+ILLLDEATSALDAESERIVQEALDQAS GRT I+IAHRL
Sbjct: 481 QLSGGQKQRIAIARALIRDPRILLLDEATSALDAESERIVQEALDQASLGRTTIMIAHRL 540
Query: 513 STIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPT 572
STI KAD+I VLQSGRV+ESGSH+ L+QMNNG+GGAYS+M+QLQQSAM++ S Y P
Sbjct: 541 STIHKADIIVVLQSGRVVESGSHNDLIQMNNGQGGAYSRMLQLQQSAMQSN--SSFYRPA 598
Query: 573 KSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDN 632
SH MSAQTP ++ SS +SP + SP FSISM S Q+HS + + +N +
Sbjct: 599 DGTSHSRTMSAQTP---VSVTSSLPSSPAFLFSPAFSISMAPSIQLHSYDESDSENLEKS 655
Query: 633 SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692
S+ P RL++M+ EWKR L+GC+G+A GAI P++AYCLG+VVS YF+KDDS +KS+
Sbjct: 656 SYPPWQW-RLVKMNLPEWKRGLIGCIGAAVFGAIQPTHAYCLGTVVSVYFLKDDSSIKSQ 714
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
T+ YC IFLGLA L+ IANL+QHYNFAIMGE L++RVREKML K+ TFEIGWFDQDENTS
Sbjct: 715 TKFYCFIFLGLAVLSFIANLLQHYNFAIMGERLIKRVREKMLGKVLTFEIGWFDQDENTS 774
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGC 812
AAICARLA EA++VRS I DR+SLL+QVFFSASLA+ + L+VTWR+AIVMIA+QPL IG
Sbjct: 775 AAICARLATEANMVRSLIGDRISLLVQVFFSASLAFMVGLIVTWRLAIVMIAMQPLLIGS 834
Query: 813 FYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872
FYS+SVLMKSMSEKA K+Q+EGSQLASEA NHRTITAFSSQ RIL LF TM+GPKKE+
Sbjct: 835 FYSKSVLMKSMSEKALKAQNEGSQLASEAAVNHRTITAFSSQQRILGLFGATMEGPKKEN 894
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADA 932
IKQSW SG GLFSSQFLTTASI LT+WY GR+M GL++PK LFQAFF+LMSTGKNIADA
Sbjct: 895 IKQSWISGFGLFSSQFLTTASIALTYWYGGRLMIHGLITPKHLFQAFFILMSTGKNIADA 954
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
GSMTSD+AKGS A+R++F ILDR+S+I+PEDP+ + + KG IELKNVFFSYP+RPD
Sbjct: 955 GSMTSDLAKGSRAMRSVFAILDRQSKIEPEDPERIM-VNKAIKGCIELKNVFFSYPTRPD 1013
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
QMIFKGL+L+IEAGKT ALVG+SGSGKST+IGLIERFYDP +GSV +D+ +I+SYNLRKL
Sbjct: 1014 QMIFKGLSLRIEAGKTAALVGESGSGKSTVIGLIERFYDPLNGSVQIDQHDIRSYNLRKL 1073
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
RS IALVSQEP LFAGTI +NIVYGKE ATEAEIR+AA+LANAHEFISS +DGY TYCGE
Sbjct: 1074 RSHIALVSQEPILFAGTIYENIVYGKENATEAEIRRAALLANAHEFISSMKDGYKTYCGE 1133
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RGVQLSGGQKQRIALARA+LKNP I+LLDEATSALDS SENLVQEALEKMMVGRTCVVVA
Sbjct: 1134 RGVQLSGGQKQRIALARAILKNPAIILLDEATSALDSMSENLVQEALEKMMVGRTCVVVA 1193
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRSPY 1223
HRLSTIQK+D I VIKNGKVVEQG+ S LL++G+GG YYSLIK+Q + SPY
Sbjct: 1194 HRLSTIQKSDTIAVIKNGKVVEQGSHSDLLAVGHGGTYYSLIKLQGNHSPY 1244
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547984|ref|XP_002515049.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223546100|gb|EEF47603.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1776 bits (4601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1256 (69%), Positives = 1030/1256 (82%), Gaps = 39/1256 (3%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD----ISISI 56
MGTKG LFR D DK+L+L GT+GSIGDG++TPLTM+ LS +IN+ TS+ IS+SI
Sbjct: 19 MGTKGNLFRCIDWTDKILMLTGTLGSIGDGLLTPLTMFTLSGLINDYATSESGTSISLSI 78
Query: 57 EAVDKVPEK---------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTS 101
E V+K K G+CWTRTAERQ SR+RMEYLKSVLRQEVGFFD Q +
Sbjct: 79 EVVNKYSLKLLYVAIVVGSSGFLEGICWTRTAERQTSRMRMEYLKSVLRQEVGFFDKQAT 138
Query: 102 SSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLL 161
S++TFQV++ I+SDAHSIQD +A+KIPN LAHL+SFI + +VAF LSWRLALA LPF+++
Sbjct: 139 SNTTFQVISAISSDAHSIQDTIADKIPNLLAHLSSFIFTFVVAFALSWRLALATLPFTIM 198
Query: 162 FIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKN 221
FI+PG+ FGK+L +G GKDAY AGGIAEQAISSIRTVYS+VGE +TL +F AL K+
Sbjct: 199 FIIPGVAFGKLLMHIGTMGKDAYAVAGGIAEQAISSIRTVYSYVGEQRTLDKFGNALLKS 258
Query: 222 MELGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGI 281
MELGIKQGL+KGLL+GSMGM + AW+F SWVGSVLVTERGE GG VFV+G C ILGGV +
Sbjct: 259 MELGIKQGLSKGLLIGSMGMIFAAWSFLSWVGSVLVTERGENGGAVFVSGTCVILGGVSL 318
Query: 282 MSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRP 341
MSALPNLSF+S+AT A RI EMID++PVI++EDE GK L LRGEIEFK+V+FSYP+RP
Sbjct: 319 MSALPNLSFLSEATIVAARIHEMIDQIPVIDNEDEKGKILPNLRGEIEFKEVNFSYPSRP 378
Query: 342 DTPTI-GLVGSSGSGK------------STVISLLERFYDPVKGNILLDGHKIKKLQLKW 388
DTP + GL +GK ST+ISLLERFYDPV G+I LDG+KIK+LQL+W
Sbjct: 379 DTPILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPVTGDIFLDGYKIKRLQLQW 438
Query: 389 LRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
LRSQMGLVNQEP+LF+TSIKENIL GK A +E VV+AA+AAN HDFI+KL DGYET+VG
Sbjct: 439 LRSQMGLVNQEPVLFATSIKENILFGKEEAPIELVVRAAKAANAHDFIVKLPDGYETQVG 498
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD+ESE++VQ+ALD+AS GRT III
Sbjct: 499 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDSESEKVVQQALDRASVGRTTIII 558
Query: 509 AHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGS 568
AHRLSTIR+ADLI VL+SGRVIESGSH+ L+QMN+ EGG Y+KMVQLQQSA + E
Sbjct: 559 AHRLSTIREADLIIVLESGRVIESGSHNELIQMNDEEGGVYNKMVQLQQSA-QGENFYSP 617
Query: 569 YNPTKSKSHHSLMSAQTP-HTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDK 627
Y+PTK +H L S TP HT + SSY +SP SP FSISM + Q+ S Q
Sbjct: 618 YSPTKGTNHRRLHSVHTPLHTSVK--SSYHSSPASAFSPVFSISMAHTVQIPSYNEQIAP 675
Query: 628 NFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDS 687
N +++ +P S R+L+M+A EWKR LGCLG+A GAI P++AYCLGS++S YF+ D S
Sbjct: 676 NLNNSFRTPPSQWRVLKMNAPEWKRAFLGCLGAASFGAIQPAHAYCLGSIISVYFLPDYS 735
Query: 688 KLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQ 747
K+KSETR+YC IFLG+AFL+ NL+QHYNFAIMGE L +RVREKMLEK+ TFE+GWFDQ
Sbjct: 736 KIKSETRIYCFIFLGVAFLSFFTNLLQHYNFAIMGERLTKRVREKMLEKVLTFEVGWFDQ 795
Query: 748 DENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQP 807
+ENTSAAI AR A EA LVRS IADRMSLL+QVFFSAS+A+ + LL++WRVAIVMIA+QP
Sbjct: 796 EENTSAAISARFATEALLVRSLIADRMSLLVQVFFSASIAFVVGLLLSWRVAIVMIAIQP 855
Query: 808 LNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKG 867
L +G FYSRSVLMK+MSE+A+K+Q+EGSQLASEA NHRTITAFSSQ RIL F + MK
Sbjct: 856 LLVGSFYSRSVLMKNMSERAQKAQTEGSQLASEAIINHRTITAFSSQKRILKFFEQAMKE 915
Query: 868 PKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGK 927
PKKE+ KQSW SG GLFSSQFLTTAS+ +TFWY GR+M QG ++ K+LFQ FFLLMSTGK
Sbjct: 916 PKKETTKQSWLSGFGLFSSQFLTTASVAITFWYGGRLMAQGNLTSKRLFQVFFLLMSTGK 975
Query: 928 NIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSY 987
NIADAGSM+SD+AKGS+AI ++F ILDRKSEI+P +P + I +G IELKN+FFSY
Sbjct: 976 NIADAGSMSSDLAKGSNAIISVFAILDRKSEIEPNNPNGIK-IRRSIEGDIELKNIFFSY 1034
Query: 988 PSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY 1047
P+RP QMIFK L+LKIEAGKT+ALVGQSGSGKSTIIGLIERFYDPQ GSV++DE +IKSY
Sbjct: 1035 PARPTQMIFKDLSLKIEAGKTMALVGQSGSGKSTIIGLIERFYDPQGGSVLIDECDIKSY 1094
Query: 1048 NLRKLRSCIALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDG 1105
NLRKLRS IALVSQEPTLFAGTIRQNIVYG ++ ATEAE+RKAA+LANAHEFISS +DG
Sbjct: 1095 NLRKLRSHIALVSQEPTLFAGTIRQNIVYGSTEDDATEAEVRKAAILANAHEFISSMKDG 1154
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG 1165
YDT CGERG QLSGGQKQRIALARA+LKNP ILLLDEATSALDS SENLVQEALEKM
Sbjct: 1155 YDTLCGERGAQLSGGQKQRIALARAILKNPKILLLDEATSALDSVSENLVQEALEKMASE 1214
Query: 1166 RTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221
RTCV+VAHRLSTIQ AD+I VI NGKVVEQG+ S LL++G GAYYSLIK+Q S
Sbjct: 1215 RTCVIVAHRLSTIQNADSIAVINNGKVVEQGSHSDLLAIGRQGAYYSLIKLQGGLS 1270
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493766|ref|XP_002279336.2| PREDICTED: ABC transporter B family member 15-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1651 bits (4275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/1254 (64%), Positives = 993/1254 (79%), Gaps = 34/1254 (2%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVD 60
MG K +F+YADG DK L+L GT+G IGDG+ + L+M+ILS +IN+ G S+ SI+I VD
Sbjct: 1 MGRKNSMFQYADGVDKWLMLLGTLGCIGDGLQSALSMFILSDIINDYGKSNSSITIHIVD 60
Query: 61 KVPEK---------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSS- 104
K K G+CWTRTAERQ SR+R++YLKSVLRQEVGFFD+Q + SS
Sbjct: 61 KYALKLLYVAVGVGISAFIEGICWTRTAERQTSRMRIKYLKSVLRQEVGFFDSQGADSSI 120
Query: 105 TFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIV 164
T+QVV+ ++SDA+SIQ + EKIP+CLA+ +FI +L AF+LSWRLALA+LPF+++FI+
Sbjct: 121 TYQVVSTLSSDANSIQAVIGEKIPDCLAYTAAFIFCLLFAFILSWRLALASLPFTVMFII 180
Query: 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224
PG+ FGK++ DLG + ++Y AGGIAEQAISSIRTVYSFVGEHQTL +FS AL+K MEL
Sbjct: 181 PGLGFGKLMMDLGMKMIESYGVAGGIAEQAISSIRTVYSFVGEHQTLVKFSQALQKTMEL 240
Query: 225 GIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSA 284
GIKQG KGL++ SMG+ Y +WAFQ+W+G+ LVT++GE GG +FVAG ++GG+ ++SA
Sbjct: 241 GIKQGFAKGLMMSSMGIIYVSWAFQAWIGTYLVTKKGESGGPLFVAGFNVLMGGLYVLSA 300
Query: 285 LPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP 344
LPNL+ IS+AT AATRIFEMIDRVP ++SED GK LAY+RGEIEFKD+ FSYP+RPD+P
Sbjct: 301 LPNLTSISEATAAATRIFEMIDRVPALDSEDRKGKALAYVRGEIEFKDIHFSYPSRPDSP 360
Query: 345 TI-GLVGSSGSGKSTV------------ISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
+ G +GK+ ISLLERFYDP KG ILLDG+K+ +L LKWLRS
Sbjct: 361 ILQGFDLRVRAGKTVGLVGGSGSGKSTVISLLERFYDPTKGEILLDGYKVNRLNLKWLRS 420
Query: 392 QMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451
QMGLVNQEP+LF+TSIKENIL GK GASME VV AA AAN HDFI KL DGYET+VGQFG
Sbjct: 421 QMGLVNQEPVLFATSIKENILFGKEGASMELVVSAATAANAHDFITKLPDGYETQVGQFG 480
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
VQLSGGQ+QRIAIARALIRDPKILLLDEATSALD ESERIVQ+ALDQA G+T I++AHR
Sbjct: 481 VQLSGGQRQRIAIARALIRDPKILLLDEATSALDTESERIVQDALDQALVGKTTIVVAHR 540
Query: 512 LSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVAS-GSYN 570
LSTIR A +I VLQ+GRV+E GSHD LMQMN +GG Y +MVQLQQ AM++E S S
Sbjct: 541 LSTIRMASMIVVLQNGRVVEKGSHDELMQMNGRQGGEYFRMVQLQQKAMQSEEDSFCSDY 600
Query: 571 PTKSKSHHSLMSAQTPHTPINEGSSYQNSP-IYPLSPTFSISMTGSFQMHSVENQNDKNF 629
+ K H + +A +P I+ SS ++P ++ SP +SIS S Q E +++
Sbjct: 601 QSDVKYQHRMYTAPSP---ISVRSSTPSTPALHAFSPAYSISAPFSIQFDPSEESYEEDS 657
Query: 630 HDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKL 689
+++ P S RLL+M+A EWK LLGCLG+ GS A+ P AYC+G+++S YF D+S +
Sbjct: 658 EKSTYRPPSQWRLLKMNAPEWKSALLGCLGAIGSAAVQPINAYCVGTLISVYFNTDESSM 717
Query: 690 KSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDE 749
KSE+R Y +FLGL I N++QHYNFA+MGE +RVREK+LEK+ TFEIGWFDQ+E
Sbjct: 718 KSESRFYSYLFLGLCVYNFIMNVLQHYNFAVMGERFTKRVREKLLEKLMTFEIGWFDQEE 777
Query: 750 NTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLN 809
N SAA+CARLA EA +VR+ + +RMSLL+Q F+ S AY L L++TWR+ +VMIAVQPL
Sbjct: 778 NNSAAVCARLATEASMVRTLVGERMSLLVQAVFATSFAYGLGLVLTWRLTLVMIAVQPLV 837
Query: 810 IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPK 869
IG FYSR+VL KSMS KA+K+Q EGSQLASEAT NHRTITAFSSQ RIL LF++++KGP+
Sbjct: 838 IGSFYSRTVLAKSMSSKARKAQKEGSQLASEATVNHRTITAFSSQRRILGLFKDSLKGPR 897
Query: 870 KESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNI 929
KE++K SWFSG GLF +QFLTTAS+ L FWY GR+M QGL++PK+LFQAF +L T K I
Sbjct: 898 KENVKLSWFSGFGLFMAQFLTTASMALAFWYGGRLMTQGLITPKRLFQAFLILTFTAKII 957
Query: 930 ADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989
ADAGSMTSD++KGS+AIR++F ILDRKSEIDPE+ + + KG IELKNVFF+YP+
Sbjct: 958 ADAGSMTSDLSKGSNAIRSVFAILDRKSEIDPENSWGIDPEKTTVKGRIELKNVFFAYPA 1017
Query: 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049
RP+Q+I KGL+LKIEAG+TVALVGQSGSGKSTIIGLIERFYDP GS+ +DE +IK++NL
Sbjct: 1018 RPNQLILKGLSLKIEAGRTVALVGQSGSGKSTIIGLIERFYDPLRGSIHIDELDIKNHNL 1077
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY 1109
R LRS IALVSQEPTLFA TIR+NI YGKE ATE+EIRKAAVLANAHEFIS +DGYDTY
Sbjct: 1078 RILRSNIALVSQEPTLFAATIRENIAYGKENATESEIRKAAVLANAHEFISGMKDGYDTY 1137
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCV 1169
CGERGVQLSGGQKQR+A+ARA+LKNP +LLLDEATSALDSASE VQEAL+KMMVGRTC+
Sbjct: 1138 CGERGVQLSGGQKQRVAIARAILKNPSVLLLDEATSALDSASERSVQEALDKMMVGRTCL 1197
Query: 1170 VVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRSPY 1223
V+AHRLSTIQ ++ I VIKNG VVE+G+ S LLS G GG+YYSLIK Q SPY
Sbjct: 1198 VIAHRLSTIQNSNTIAVIKNGMVVEKGSHSELLSFGPGGSYYSLIKPQVGDSPY 1251
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569217|ref|XP_003552801.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 18-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1638 bits (4242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1260 (64%), Positives = 979/1260 (77%), Gaps = 57/1260 (4%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINEL-GTSDISISIEAV 59
MG+K G FRYADG DKLLLLFGT+G IG G+ TP+TM +L +I++ G S S+S +
Sbjct: 1 MGSKDGFFRYADGFDKLLLLFGTLGCIGGGLQTPMTMLVLGSLIDDYAGGSGHSVSNHVI 60
Query: 60 DKVPEK---------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSS 104
DK + G+CWTRTAERQ SR+R EYLKSVLRQEVGFFD QT SSS
Sbjct: 61 DKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSS 120
Query: 105 TFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIV 164
TFQV+ ITSDA +IQD +A+K+PNCL HL++F S +VA LSWRLALAA PFS++ I+
Sbjct: 121 TFQVIATITSDAQTIQDTMADKVPNCLGHLSAFFSSFVVALFLSWRLALAAFPFSIIMIM 180
Query: 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224
P I+FGK +K+LG + KDAY AG IAEQ ISSIRTVYS+VGE QTL+ F+ L+K+ME+
Sbjct: 181 PAIIFGKTMKELGNKMKDAYGVAGSIAEQTISSIRTVYSYVGEKQTLEAFNSGLQKSMEI 240
Query: 225 GIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSA 284
GIK G TKG+++GS G+ Y WAFQSWVGSVLV +GE GG VF A IC I GG+ +MSA
Sbjct: 241 GIKLGQTKGVIIGSFGLLYATWAFQSWVGSVLVRTKGESGGPVFCAEICIIWGGLSLMSA 300
Query: 285 LPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP 344
LPNL FI +ATTA TRIFEMIDRVP INS E GK L + RGEI F +V+FSYP+RPD P
Sbjct: 301 LPNLGFILEATTATTRIFEMIDRVPTINSYKEKGKLLTHTRGEITFNEVEFSYPSRPDAP 360
Query: 345 TI-GLVGSSGSGK------------STVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
+ GL +GK ST+ISLLERFYDPV G ILLDG+ I+ L +KWLRS
Sbjct: 361 VLQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHIKWLRS 420
Query: 392 QMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451
QMGLVNQEPILF+TSI+ENIL GK GASME V+ AA+AAN HDFI+KL +GYET+VGQFG
Sbjct: 421 QMGLVNQEPILFATSIRENILFGKEGASMEAVISAAKAANAHDFIVKLPNGYETQVGQFG 480
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
QLSGGQKQRIAIARALIR+PKILLLDEATSALD++SER+VQ+ALD+AS+GRT IIIAHR
Sbjct: 481 AQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQDALDKASRGRTTIIIAHR 540
Query: 512 LSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNP 571
LSTIRKAD I V+QSGRV+ESGSHD L+Q+NNG+GG YSKM+QLQQ+ ++E A N
Sbjct: 541 LSTIRKADSIVVIQSGRVVESGSHDELLQLNNGQGGTYSKMLQLQQAISQDENALLQIN- 599
Query: 572 TKSKSHHSLMSAQTPHTPINEGS---SYQNSPI-------YPLSPTFSISMTGSFQMHSV 621
++P +N+ S S Q+SPI P SP +SIS+ GS S
Sbjct: 600 ------------KSPLAMVNQTSPIFSRQSSPIDHAFSSTQPFSPIYSISIPGS----SF 643
Query: 622 ENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAY 681
++ + +N+ +S++ S RLL+M+A EWK LLGCLG+ GSG P Y+YCLG V S Y
Sbjct: 644 DDYSSENWEKSSNASFSQWRLLKMNAPEWKHALLGCLGAIGSGICQPIYSYCLGXVASVY 703
Query: 682 FIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFE 741
FIKD+S +KSE RLY IF +A + ++ LIQHYNF IM E L++RVRE +LEK+ TFE
Sbjct: 704 FIKDNSLIKSEIRLYSSIFCCIAVVNFLSGLIQHYNFTIMAERLLKRVRENLLEKVLTFE 763
Query: 742 IGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIV 801
+GWFDQ++N+SAAICARLA EA+LVRS +A+RMSLL+ V A LA+ LSL+VTWRVA+V
Sbjct: 764 MGWFDQEDNSSAAICARLATEANLVRSLVAERMSLLVNVSVMAFLAFVLSLIVTWRVALV 823
Query: 802 MIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLF 861
M A+QPL I CFYS+++LMKSM+ KA+K+Q EGSQLA EATTNHRTI AFSS+ RIL+LF
Sbjct: 824 MTAMQPLIIVCFYSKNILMKSMAGKARKAQREGSQLAMEATTNHRTIAAFSSEKRILNLF 883
Query: 862 RETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFL 921
R M+GPKKESIKQSW SG L +S F+TTASITLTFWY GR++NQGLV K L QAF +
Sbjct: 884 RMAMEGPKKESIKQSWISGSILSASYFVTTASITLTFWYGGRLLNQGLVESKPLLQAFLI 943
Query: 922 LMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELK 981
LM TG+ IA+ S TSDIAK AI ++F ILDRKSEI+PEDP+ + KG I+L+
Sbjct: 944 LMGTGRQIAETASATSDIAKSGRAISSVFAILDRKSEIEPEDPR-HRKFKNTMKGHIKLR 1002
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
+VFFSYP+RPDQMI KGL+L IEAGKTVALVGQSGSGKSTIIGLIERFYDP GS+ +D
Sbjct: 1003 DVFFSYPARPDQMILKGLSLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDN 1062
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISS 1101
+I+ +NLR LRS IALVSQEPTLFAGTIR NIVYGK+ A+E EIRKAA L+NAHEFISS
Sbjct: 1063 CDIREFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFISS 1122
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
+DGYDTYCGERGVQLSGGQKQRIA+ARAVLK+P +LLLDEATSALDS SEN VQEALEK
Sbjct: 1123 MKDGYDTYCGERGVQLSGGQKQRIAIARAVLKDPSVLLLDEATSALDSVSENRVQEALEK 1182
Query: 1162 MMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221
MMVGRTC+V+AHRLSTIQ D+I VIKNGKVVEQG+ S LLSMG+ AYYSLI++Q S
Sbjct: 1183 MMVGRTCIVIAHRLSTIQSVDSIAVIKNGKVVEQGSHSELLSMGSNEAYYSLIRLQHGHS 1242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435440|ref|XP_004135503.1| PREDICTED: putative multidrug resistance protein-like [Cucumis sativus] gi|449519519|ref|XP_004166782.1| PREDICTED: putative multidrug resistance protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1634 bits (4230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1246 (66%), Positives = 996/1246 (79%), Gaps = 39/1246 (3%)
Query: 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDI-SISIEAVDKV 62
K G+FRYAD D+LL+ G +GSIGDG+ TPLTM +LS +IN SD S S VDK
Sbjct: 5 KTGVFRYADWLDQLLMFLGCLGSIGDGLTTPLTMLVLSGMINHYSVSDSNSFSNHVVDKY 64
Query: 63 PEK---------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQ 107
K GMCWTRTAERQ SRIRMEYLKSVLRQE FFD ++SSTF
Sbjct: 65 TLKLLYIAIGVGLCAFFEGMCWTRTAERQTSRIRMEYLKSVLRQEASFFDINQAASSTFL 124
Query: 108 VVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGI 167
+V++ITSD H+IQD +AEKIPN LAH++ FI I AF+LSW+LALAALPFS +FI+PG+
Sbjct: 125 IVSSITSDCHTIQDTIAEKIPNFLAHISGFIFCIPTAFVLSWQLALAALPFSFMFIIPGV 184
Query: 168 VFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIK 227
FGKV K+LG + K +Y AG IAEQAISSIRTVYS+VGEHQTL++FS AL+K+M GIK
Sbjct: 185 GFGKVYKNLGVKAKVSYVVAGSIAEQAISSIRTVYSYVGEHQTLEQFSHALQKSMNFGIK 244
Query: 228 QGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPN 287
QGL +GL++GSM M Y AWA+Q+WVGS+LVTERGE GG + ++GIC I GG+ +M+ALPN
Sbjct: 245 QGLGRGLMMGSMAMMYAAWAYQAWVGSILVTERGETGGAILISGICIIFGGICVMNALPN 304
Query: 288 LSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTI- 346
LSFIS++T AA+RIFEM+DR+PVI++ED GKTL LRG+IEF+DV+FSYP+RP T +
Sbjct: 305 LSFISESTIAASRIFEMVDRIPVIDAEDGKGKTLDCLRGKIEFRDVEFSYPSRPATSILQ 364
Query: 347 GLVGSSGSGKSTV------------ISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394
GL +G++ LLERFYDPVKG+ILLDGH+I+KLQLKWLRSQMG
Sbjct: 365 GLNLKVNAGETVGLVGGSGSGKSTVFHLLERFYDPVKGDILLDGHRIRKLQLKWLRSQMG 424
Query: 395 LVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQL 454
LVNQEPILF+TSIKENIL GK GASM V +AA+AAN HDFI L DGYET+VGQFGVQL
Sbjct: 425 LVNQEPILFATSIKENILFGKEGASMPLVKRAAKAANAHDFIATLPDGYETQVGQFGVQL 484
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST 514
SGGQKQRIAIARALIRDPKILLLDEATSALD ESERIVQEALDQAS+GRT I+IAHRLST
Sbjct: 485 SGGQKQRIAIARALIRDPKILLLDEATSALDVESERIVQEALDQASRGRTTIVIAHRLST 544
Query: 515 IRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPT-K 573
I+KAD I VL+SGRV+ESGSH+ L+Q NN G YSKMV++QQS M N +S Y+ T +
Sbjct: 545 IQKADQILVLESGRVVESGSHNKLLQRNNE--GIYSKMVKMQQSRMENNPSSSLYDSTGE 602
Query: 574 SKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDK-----N 628
+ ++ A+TP TP+N+ S ++SPI+ SP +SISM+ + + +++ N
Sbjct: 603 TYLQKTVGGARTPLTPLNQISVRRSSPIWYNSPIYSISMSCPYSVE-IDSSNYSYCEGLK 661
Query: 629 FHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSK 688
+ +S S R+ R++A EWK+ LLGC+G+AG+G P Y+YCLG+V S YF+KD++
Sbjct: 662 YTSSSSQSPSQWRIWRLNAPEWKQALLGCMGAAGTGITQPIYSYCLGTVASVYFLKDNAA 721
Query: 689 LKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQD 748
LKS+ R YC IFLG+ L+ I+NL+QHY+FAIMGE+L +RVREKMLEKI TFEIGWFD+D
Sbjct: 722 LKSDIRFYCFIFLGITCLSFISNLVQHYSFAIMGENLTKRVREKMLEKIMTFEIGWFDKD 781
Query: 749 ENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPL 808
ENTSAAICARLA E +LVRS +A+R SLL+QV +A+LA+ L LLVTWRVAIV IA+QPL
Sbjct: 782 ENTSAAICARLALEGNLVRSLVAERTSLLVQVSVTATLAFVLGLLVTWRVAIVAIAMQPL 841
Query: 809 NIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGP 868
IG FYSR VLM+++SEKA+K+Q EGSQLASEA TNHRTI AFSSQDRIL LF +M+ P
Sbjct: 842 IIGSFYSRKVLMRNISEKARKAQGEGSQLASEAITNHRTIAAFSSQDRILSLFEASMEFP 901
Query: 869 KKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKN 928
K++++KQSW SG+GLFSS FLTT + LT WY GR++NQGLV+PKQLFQAFF+LMSTGKN
Sbjct: 902 KQDNVKQSWISGLGLFSSLFLTTTTTALTLWYGGRLINQGLVTPKQLFQAFFILMSTGKN 961
Query: 929 IADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYP 988
IAD GSM+SDIAKG++AI +IF ILDR +EIDP+ + + ++E +G +ELKNVFF+YP
Sbjct: 962 IADVGSMSSDIAKGANAIVSIFAILDRNTEIDPQQLEGVK-VKETIRGEVELKNVFFAYP 1020
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
+RPDQ+IF GL+LKIEAG TVALVGQSGSGKST+IGLIERFYDP+ G V +D +IKSYN
Sbjct: 1021 TRPDQLIFNGLSLKIEAGTTVALVGQSGSGKSTVIGLIERFYDPKKGVVRIDGIDIKSYN 1080
Query: 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
LR LRS IALVSQEP LFAGTIR NI++G++ +E EIRKAA LANAHEFISS +DGY++
Sbjct: 1081 LRSLRSHIALVSQEPALFAGTIRNNILFGQDDRSENEIRKAAKLANAHEFISSMKDGYES 1140
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
CGERGVQLSGGQKQRIALARA+LKNP ILLLDEATSALDS SE LVQEALEKMMVGRT
Sbjct: 1141 QCGERGVQLSGGQKQRIALARAILKNPKILLLDEATSALDSMSETLVQEALEKMMVGRTS 1200
Query: 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+VVAHRLSTIQKAD+I VIK GK+VEQG+ S+LL G GAYYSLI
Sbjct: 1201 LVVAHRLSTIQKADSIAVIKQGKIVEQGSHSTLLDHGQSGAYYSLI 1246
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545153|ref|XP_003541009.1| PREDICTED: putative multidrug resistance protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1606 bits (4159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 788/1250 (63%), Positives = 979/1250 (78%), Gaps = 42/1250 (3%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEK- 65
+FRYADG DKLL+ FGT+G +GDG+ TPL MYILS VIN G + ++ V+K K
Sbjct: 1 MFRYADGVDKLLMFFGTLGCLGDGLQTPLMMYILSDVINAYGDKNSHLTKHDVNKYALKL 60
Query: 66 --------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTS-SSSTFQVVT 110
G+CWTRTAERQASR+RMEYLKSVLRQEVGFFD Q + SS+T+QVV+
Sbjct: 61 FCAALGVGLSAFIEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQIAGSSTTYQVVS 120
Query: 111 NITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFG 170
I+SDA++IQ + EKIP+CLA++++F+ + AF+LSWRL LAA+P S++FIVP +VFG
Sbjct: 121 LISSDANTIQVVLCEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVFG 180
Query: 171 KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230
K++ DL + ++Y AGGIAEQAISSIRTVYS+VGE+QTL RFS AL+K ME GIKQG
Sbjct: 181 KIMLDLVMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTMEFGIKQGF 240
Query: 231 TKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSF 290
KGL+LGSMG+ Y +W FQ+WVG+ L+T +GE+GG VFVAG ++GG+ I+SALPNL+
Sbjct: 241 AKGLMLGSMGVIYISWGFQAWVGTFLITNKGEQGGHVFVAGFNVLMGGLSILSALPNLTA 300
Query: 291 ISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTI-GLV 349
I++AT A TR+FEMIDRVP I+SED+ GK L+Y+RGEIEF+D+ F YP+RPDTP + G
Sbjct: 301 ITEATAAVTRLFEMIDRVPSIDSEDKKGKALSYVRGEIEFQDIYFCYPSRPDTPVLQGFN 360
Query: 350 GSSGSGKS------------TVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397
+ +GKS T+I+LLERFYDPV+G ILLDGHK +LQLKWLRSQ+GLVN
Sbjct: 361 LTVPAGKSVGLVGGSGSGKSTIIALLERFYDPVEGLILLDGHKTNRLQLKWLRSQLGLVN 420
Query: 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
QEP+LF+TSIKENIL GK GASME+V+ AA+AAN HDFI+KL DGYET+VGQFG QLSGG
Sbjct: 421 QEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGG 480
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK 517
QKQRIAIARAL+RDPK+LLLDEATSALDA+SER+VQ A+DQAS+GRT IIIAHRLSTIR
Sbjct: 481 QKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRT 540
Query: 518 ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSH 577
A+LI VLQSGRVIE G+H+ LM++ +GE Y+ MV+LQQ +N+ + S T+ KS
Sbjct: 541 ANLIAVLQSGRVIELGTHNELMELTDGE---YAHMVELQQITTQNDESKPSNLLTEGKSS 597
Query: 578 HSLMSAQTPHTPINEGSSYQNSP-IYPLSPTFSISMTGSFQMHSVENQNDKNFHDN---- 632
H + Q+P SS +P +YP S FS+ S+ + + +D +F DN
Sbjct: 598 HRMSVPQSPTVSFR--SSTVGTPMLYPFSQGFSMGTPYSYSIQY--DPDDDSFEDNLKRT 653
Query: 633 SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692
+H S RLL+M+ EW R +LG LG+ GSGA+ P AYC+G+++S YF D S++KS+
Sbjct: 654 NHPAPSQWRLLKMNTPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKSK 713
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
++ L+FLG+ +++QHYNFA+MGE L +R+REK+LEK+ TFEIGWFD ++NTS
Sbjct: 714 AKVLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEDNTS 773
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGC 812
A+ICARL++EA+LVRS + DRMSLL Q F + AYTL L++TWR+++VMIAVQPL IG
Sbjct: 774 ASICARLSSEANLVRSLVGDRMSLLAQAIFGSIFAYTLGLVLTWRLSLVMIAVQPLVIGS 833
Query: 813 FYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872
FYSRSVLMKSM+EKA+K+Q EGSQLASEA NHRTITAFSSQ R+L LF+ TM GPK++S
Sbjct: 834 FYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKEDS 893
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADA 932
I+QSW SG GLFSSQF T+S L +WY GR++ G + PK LFQAF +L+ T IADA
Sbjct: 894 IRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDGKIEPKHLFQAFLILLFTAYIIADA 953
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
GSMTSD++KG SA+ ++F ILDRK+EIDPE E + +G +ELKNVFF+YPSRPD
Sbjct: 954 GSMTSDLSKGRSAVGSVFAILDRKTEIDPETSWGGEK-KRKLRGRVELKNVFFAYPSRPD 1012
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
QMIFKGL LK+E G+TVALVG SG GKST+IGLIERFYDP G+V +DE++IKSYNLR L
Sbjct: 1013 QMIFKGLNLKVEPGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSYNLRML 1072
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
RS IALVSQEPTLFAGTIR+NI YGKE TE+EIR+AA LANAHEFIS DGY+TYCGE
Sbjct: 1073 RSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYCGE 1132
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RGVQLSGGQKQRIALARA+LKNP ILLLDEATSALDS SE LVQEALEK+MVGRTC+VVA
Sbjct: 1133 RGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVA 1192
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRSP 1222
HRLSTIQK++ I VIKNGKVVEQG+ + L+S+G GAYYSL+K+Q+ SP
Sbjct: 1193 HRLSTIQKSNYIAVIKNGKVVEQGSHNELISLGREGAYYSLVKLQSGSSP 1242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515002|ref|XP_003526190.1| PREDICTED: putative multidrug resistance protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1606 bits (4158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1250 (63%), Positives = 977/1250 (78%), Gaps = 42/1250 (3%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEK- 65
+FRYADG DKLL+ FGT+GS+GDG+ TPL MYILS VIN G + ++ V+K +
Sbjct: 1 MFRYADGMDKLLMFFGTLGSLGDGLQTPLMMYILSDVINAYGDKNSHLTRHDVNKYALRL 60
Query: 66 --------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTS-SSSTFQVVT 110
GMCWTRTAERQASR+RMEYLKSVLRQEVGFFD QT+ SS+T+QVV+
Sbjct: 61 FCAALGVGLSAFIEGMCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVS 120
Query: 111 NITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFG 170
I+SDA++IQ + EKIP+C+A++++F+ ++AF+LSWRL LAA+P S++FIVP +VFG
Sbjct: 121 LISSDANTIQVVLCEKIPDCVAYMSTFLFCHILAFVLSWRLTLAAIPLSVMFIVPALVFG 180
Query: 171 KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230
K++ DL + ++Y AGGIAEQAISSIRTVYS+VGE+QTL RFS AL+K ME GIKQG
Sbjct: 181 KIMLDLVMKMIESYGIAGGIAEQAISSIRTVYSYVGENQTLTRFSSALQKTMEFGIKQGF 240
Query: 231 TKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSF 290
KGL+LGSMG+ Y +W FQ+WVG+ L+T +GEKGG VFVAG ++GG+ I+SALPNL+
Sbjct: 241 AKGLMLGSMGVIYISWGFQAWVGTFLITNKGEKGGHVFVAGFNVLMGGLSILSALPNLTA 300
Query: 291 ISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTI-GLV 349
I++AT A TR+FEMIDRVP I+SED+ GK L+Y+RGEIEF+DV F YP+RPDTP + G
Sbjct: 301 ITEATAAVTRLFEMIDRVPTIDSEDKKGKALSYVRGEIEFQDVYFCYPSRPDTPVLQGFN 360
Query: 350 GSSGSGKSTV------------ISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397
+ +GKS I L ERFYDPV+G ILLDGHK +LQLKWLRSQ+GLVN
Sbjct: 361 LTVPAGKSVGLVGGSGSGKSTVIQLFERFYDPVEGVILLDGHKTNRLQLKWLRSQIGLVN 420
Query: 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
QEP+LF+TSIKENIL GK GASME+V+ AA+AAN HDFI+KL DGYET+VGQFG QLSGG
Sbjct: 421 QEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGG 480
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK 517
QKQRIAIARAL+RDPK+LLLDEATSALDA+SER+VQ A+DQAS+GRT IIIAHRLSTIR
Sbjct: 481 QKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRT 540
Query: 518 ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSH 577
A+LI VLQ+GRV+E G+H+ LM++ +GE Y+ MV+LQQ +N+ + S T+ KS
Sbjct: 541 ANLIAVLQAGRVVELGTHNELMELTDGE---YAHMVELQQITTQNDESKPSNLLTEGKSS 597
Query: 578 HSLMSAQTPHTPINEGSSYQNSP-IYPLSPTFSISMTGSFQMHSVENQNDKNFHDN---- 632
H Q+P SS +P +YP S FS+ S+ + + +D +F DN
Sbjct: 598 HRTSIPQSPTVSFR--SSTVGTPMLYPFSQGFSMGTPYSYSIQY--DPDDDSFEDNLKRP 653
Query: 633 SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692
+H S RLL+M+A EW R +LG LG+ GSGA+ P AYC+G+++S YF D S++KS+
Sbjct: 654 NHPAPSQWRLLKMNAPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKSK 713
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
+ L+FLG+ +++QHYNFA+MGE L +R+REK+LEK+ TFEIGWFD ++NTS
Sbjct: 714 AKTLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEDNTS 773
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGC 812
A+ICARL++EA+LVRS + DRMSLL Q F + AYTL L++TW++++VMIAVQPL IG
Sbjct: 774 ASICARLSSEANLVRSLVGDRMSLLAQAIFGSIFAYTLGLVLTWKLSLVMIAVQPLVIGS 833
Query: 813 FYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872
FYSRSVLMKSM+EKA+K+Q EGSQLASEA NHRTITAFSSQ R+L LF+ TM GPKKES
Sbjct: 834 FYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKKES 893
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADA 932
I+QSW SG GLFSSQF T+S L +WY GR++ + PK LFQAF +L+ T IADA
Sbjct: 894 IRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDDQIEPKHLFQAFLILLFTAYIIADA 953
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
GSMTSD++KGSSA+ ++FTILDRK+EIDPE E + +G +ELKNVFF+YPSRPD
Sbjct: 954 GSMTSDLSKGSSAVGSVFTILDRKTEIDPETSWGGEK-KRKIRGRVELKNVFFAYPSRPD 1012
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
QMIFKGL LK+E G+TVALVG SG GKST+IGLIERFYDP G+V +DE++IK YNLR L
Sbjct: 1013 QMIFKGLNLKVEPGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKFYNLRML 1072
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
RS IALVSQEPTLFAGTIR+NI YGKE TE+EIR+AA LANAHEFIS DGY+TYCGE
Sbjct: 1073 RSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYCGE 1132
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RGVQLSGGQKQRIALARA+LKNP ILLLDEATSALDS SE LVQEALEK+MVGRTC+VVA
Sbjct: 1133 RGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVA 1192
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRSP 1222
HRLSTIQK++ I VIKNGKVVEQG+ + L+S+G+ GAYYSL+K+Q SP
Sbjct: 1193 HRLSTIQKSNYIAVIKNGKVVEQGSHNELISLGHEGAYYSLVKLQGGSSP 1242
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124238|ref|XP_002319279.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222857655|gb|EEE95202.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1599 bits (4141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1257 (62%), Positives = 989/1257 (78%), Gaps = 41/1257 (3%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVD 60
MG K +FRYAD KDKLL+ FG +GSIGDG+ PLTMY+LS VINE G+S S+SI+ V+
Sbjct: 1 MGGKDSMFRYADSKDKLLMFFGVLGSIGDGLQYPLTMYVLSHVINEYGSSSASVSIDTVN 60
Query: 61 KVPEK---------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTS-SSS 104
K K G+CWTRTAERQ S +RMEYLKSVLRQEVGFFD Q + SS+
Sbjct: 61 KYSLKLLYVAIAVGLSAFVEGLCWTRTAERQTSIMRMEYLKSVLRQEVGFFDTQEAGSST 120
Query: 105 TFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIV 164
T QVV+ I++DA+SIQ A+ +KIPNCLA++++F+ ++ +++LSW+LALAALP +L+FI+
Sbjct: 121 THQVVSTISNDANSIQVAICDKIPNCLAYMSTFVFCLVTSYMLSWKLALAALPLTLMFII 180
Query: 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224
PG+VFGK + D+ + ++Y AGGIAEQA+SSIRTVYS+V E+QTL +FS AL++ MEL
Sbjct: 181 PGLVFGKFMMDVIMKMIESYGVAGGIAEQAVSSIRTVYSYVAENQTLDKFSRALQQTMEL 240
Query: 225 GIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSA 284
GIKQG KGLL+GSMGM Y W+FQ+W+G+ LVTE+GEKGG +FVAGI I+GG+ ++ A
Sbjct: 241 GIKQGFAKGLLMGSMGMIYVGWSFQAWLGTYLVTEKGEKGGSIFVAGINIIMGGLSVLGA 300
Query: 285 LPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP 344
LPNL+ I++A A+TRIF+MIDR P I+SED+ GK L+Y+RGEI+F+D+ F+YP+RPDTP
Sbjct: 301 LPNLTSITEAMAASTRIFQMIDRTPSIDSEDKKGKALSYIRGEIQFQDIYFNYPSRPDTP 360
Query: 345 TI-GLVGSSGSGKSTV------------ISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
+ GL + +GK+ ISLL+RFYDP +G ILLDGHK+ +LQLKW RS
Sbjct: 361 ILQGLNLTIPAGKTVGLVGGSGSGKSTVISLLQRFYDPNEGQILLDGHKVNRLQLKWWRS 420
Query: 392 QMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451
QMGLVNQEP+LF+TSIKENIL GK GASM+ VV AA+ AN HDFI KL DGYET+VGQFG
Sbjct: 421 QMGLVNQEPVLFATSIKENILFGKEGASMDDVVNAAKDANAHDFITKLPDGYETQVGQFG 480
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
QLSGGQKQRIAIARALIRDPKILLLDEATSALD +SER+VQ+A+D+AS+GRT I IAHR
Sbjct: 481 FQLSGGQKQRIAIARALIRDPKILLLDEATSALDVQSERMVQDAIDEASKGRTTITIAHR 540
Query: 512 LSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNP 571
LSTIR A+LI VLQ+GRVIESGSH+ LMQ N+G+GG Y +MVQLQ A +NE S +
Sbjct: 541 LSTIRTANLIVVLQAGRVIESGSHEQLMQKNDGQGGEYFRMVQLQM-ASQNE---ASNDF 596
Query: 572 TKSKSHHSLMSAQTPHTPINEGSSYQNSPIY-PLSPTFSISMTGSFQMHSVENQNDKNFH 630
T HS +P++ S +P+ P SP FS+ SF S+ + D++F
Sbjct: 597 TYHNDGHSFHRMSPAPSPLSVRRSVPGTPLLNPFSPAFSMGTPYSF---SIYDPADESFE 653
Query: 631 DN----SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDD 686
D+ ++ S RLLRM+A EW L+GCL + GSGA+ P AYC+GS++S YF+ D
Sbjct: 654 DDLYQLNYPAPSQWRLLRMNAPEWGSALIGCLAAIGSGAVQPINAYCVGSLISNYFLSDK 713
Query: 687 SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFD 746
S K ++ L+FLG+A L I +L+QHYNFA+MGE L +RVREK+L K+ TFEIGWFD
Sbjct: 714 SAAKHKSNKLSLVFLGIAALDFITSLLQHYNFAVMGEKLTRRVREKLLAKLMTFEIGWFD 773
Query: 747 QDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQ 806
DENTSA+ICA+LA EA++ RS + DRMSLL+Q FF + AYTL L++TWR+A+VMIAVQ
Sbjct: 774 DDENTSASICAKLATEANMFRSLVGDRMSLLVQAFFGSLFAYTLGLILTWRLALVMIAVQ 833
Query: 807 PLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMK 866
PL +G +YS+SVLMKSM+ KA+K+Q EGSQLASEA NHRTITAFSSQ R+L LFR T++
Sbjct: 834 PLVVGSYYSKSVLMKSMAGKAQKAQKEGSQLASEAVINHRTITAFSSQRRMLGLFRATLR 893
Query: 867 GPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTG 926
GP++ES + SW SG GLFSSQFL TAS L FWY GR++ +GL+SP+ LFQAF +L+ +
Sbjct: 894 GPREESARHSWLSGFGLFSSQFLNTASTALAFWYGGRLLTEGLISPEHLFQAFLILLFSA 953
Query: 927 KNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFS 986
IA+AGSMT+D++KG +AIR++ ILDRKSEIDP + + DI++ KG +E NVFF+
Sbjct: 954 YVIAEAGSMTNDLSKGGNAIRSVLAILDRKSEIDPNNSWGALDIKKKLKGQVEFNNVFFA 1013
Query: 987 YPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046
YP+RPDQMIFKGL LKI+AGKT+ALVG SGSGKST+IGLIERFYDP G+V +D +++KS
Sbjct: 1014 YPTRPDQMIFKGLNLKIDAGKTMALVGPSGSGKSTVIGLIERFYDPMKGTVFIDGQDVKS 1073
Query: 1047 YNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGY 1106
YNLR LRS IALVSQEPTLFAGTIR+NI YGKE A E+EIRKAAVLANAHEFIS ++GY
Sbjct: 1074 YNLRLLRSHIALVSQEPTLFAGTIRENIAYGKEDARESEIRKAAVLANAHEFISGMKEGY 1133
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166
DTYCGERGVQLSGGQKQRIALARA++K+P ILLLDEATSALDS SE+LVQEALEKMMVGR
Sbjct: 1134 DTYCGERGVQLSGGQKQRIALARAIIKDPSILLLDEATSALDSVSESLVQEALEKMMVGR 1193
Query: 1167 TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRSPY 1223
TCVV+AHRLSTIQK++ I VIKNGKVVEQG+ S L+ +G+GGAYYSL ++Q+ S Y
Sbjct: 1194 TCVVIAHRLSTIQKSNCISVIKNGKVVEQGSHSQLMELGSGGAYYSLTRIQSGSSSY 1250
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474799|ref|XP_003607685.1| ABC transporter B family member [Medicago truncatula] gi|355508740|gb|AES89882.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1587 bits (4109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1261 (61%), Positives = 976/1261 (77%), Gaps = 64/1261 (5%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEK- 65
+FRYADG DKLL+ FGT+GS+GDG+ PL MYILS VIN G + ++ V+K K
Sbjct: 6 MFRYADGFDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGDKNSRLNQHDVNKFALKL 65
Query: 66 ---------------------------GMCWTRTAERQASRIRMEYLKSVLRQEVGFFDN 98
G+CW RTAERQASR+R+EYLKSVLRQEVGFFD
Sbjct: 66 LCVAIGVGISAFIVFLIDTNLIMATTEGICWNRTAERQASRMRVEYLKSVLRQEVGFFDT 125
Query: 99 QTS-SSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALP 157
QT+ SS+T+QVV+ I+SDA+++Q A+ EKIP+CL ++++F + AF+LSWRLALAA+P
Sbjct: 126 QTAGSSTTYQVVSLISSDANTVQSALCEKIPDCLTYMSTFFFCHIFAFVLSWRLALAAIP 185
Query: 158 FSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLA 217
S++FIVP +VFGK++ D+ + ++Y AGGIAEQAISSIRTV+S+VGE+QTLKRFS A
Sbjct: 186 LSIMFIVPALVFGKIMLDVTMKMIESYGVAGGIAEQAISSIRTVFSYVGENQTLKRFSTA 245
Query: 218 LRKNMELGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILG 277
L K ME GIKQG KGL+LGSMG+ Y +W FQ+WVG+ L++++GEKGG VFVAG ++G
Sbjct: 246 LEKTMEFGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLISDKGEKGGHVFVAGFNILMG 305
Query: 278 GVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSY 337
G+ I+SALPNL+ I +A++A TR++EMIDRVPVI+SE++ GK L+++RGEIEFKD+ F Y
Sbjct: 306 GLSILSALPNLTAIMEASSAVTRLYEMIDRVPVIDSEEKKGKALSHVRGEIEFKDIYFCY 365
Query: 338 PTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL 384
P+RPD+P IGLVG SGSGKST+I+LLERFYDPV+G ILLDGHKI +L
Sbjct: 366 PSRPDSPVLQEFNLIIPAGKRIGLVGGSGSGKSTIIALLERFYDPVEGEILLDGHKINRL 425
Query: 385 QLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE 444
QLKWLRS +GLVNQEP+LF+TSIKENIL GK GASME+V+ AA++AN HDFI+KL DGYE
Sbjct: 426 QLKWLRSNLGLVNQEPVLFATSIKENILFGKEGASMESVISAAKSANAHDFIVKLPDGYE 485
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRT 504
T+VGQFG QLSGGQKQRIAIARAL+RDPK+LLLDEATSALD++SER+VQ A+DQAS+GRT
Sbjct: 486 TQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDSQSERVVQAAIDQASKGRT 545
Query: 505 MIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV 564
IIIAHRLSTIR AD I VLQ+G+VIE+GSH+VLM++N GEGG Y++MV+LQQ +N+
Sbjct: 546 TIIIAHRLSTIRTADTIAVLQAGKVIETGSHNVLMEINGGEGGEYARMVKLQQVTAQNDE 605
Query: 565 ASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSP-IYPLSPTFSISMTGSF--QMHSV 621
S + KS H + Q+P SS +P +YP S FSI S+ Q
Sbjct: 606 IKHSNLQLEGKSSHRMSIPQSPGMSFK--SSTPGTPMLYPFSQGFSIGTPYSYSIQYDHD 663
Query: 622 ENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAY 681
++ + +F ++H S RLL+M+A EW R +LG LG+ GSGA+ P AYC+G ++S Y
Sbjct: 664 DDSYEDDFKRSNHPAPSQWRLLKMNAPEWGRGVLGVLGAIGSGAVQPINAYCVGLLISVY 723
Query: 682 FIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFE 741
F D SK+KS+ R L+FLG+ +++QHYNFA+MGE L +R+REK+LEK+ +FE
Sbjct: 724 FEPDTSKMKSKARALALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMSFE 783
Query: 742 IGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIV 801
IGWFD ++NTSAAICARLA+EA+LVRS + DRMSLL Q F + AYT+ L++TWR+++V
Sbjct: 784 IGWFDHEDNTSAAICARLASEANLVRSLVGDRMSLLAQAIFGSIFAYTVGLVLTWRLSLV 843
Query: 802 MIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLF 861
MIAVQPL IG FY+RSVLMK+M+EK +K+Q EGSQLASEA NHRTITAFSSQ R+L LF
Sbjct: 844 MIAVQPLVIGSFYARSVLMKTMAEKTRKAQREGSQLASEAVINHRTITAFSSQKRMLALF 903
Query: 862 RETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFL 921
+ TM GPK+ESI+QSW SG GLFSSQF T+S L +WY G ++ +G + P +LFQAF +
Sbjct: 904 KATMTGPKQESIRQSWISGFGLFSSQFFNTSSTALAYWYGGSLLIKGQIEPTELFQAFLI 963
Query: 922 LMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELK 981
L+ T IA+AGSMTSDI+KGS+A+ ++F I RK +G +ELK
Sbjct: 964 LLFTAYIIAEAGSMTSDISKGSNAVGSVFQIKKRK-----------------IRGRVELK 1006
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
NVFF+YPSRP+QM+F+GL LK+EAG+TVALVG SG GKSTIIGLIERFYDP G+V +DE
Sbjct: 1007 NVFFAYPSRPEQMVFQGLNLKVEAGRTVALVGHSGCGKSTIIGLIERFYDPIKGTVCIDE 1066
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISS 1101
++IK+YNLR LRS IALVSQEPTLF+GTIR+NI YGKE ATE+EIR+AA +ANAHEFIS
Sbjct: 1067 QDIKTYNLRMLRSHIALVSQEPTLFSGTIRENIAYGKENATESEIRRAATVANAHEFISG 1126
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
+GY+T+CGERGVQLSGGQKQRIALARA+LKNP ILLLDEATSALDSASE LVQEALEK
Sbjct: 1127 MNEGYETHCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSASEVLVQEALEK 1186
Query: 1162 MMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221
+MVGRTC+ VAHRLSTIQ +++I VIKNGKVVEQG+ + L+S+G GAY+SL+K+Q S
Sbjct: 1187 IMVGRTCIAVAHRLSTIQNSNSIAVIKNGKVVEQGSHNELISLGRNGAYHSLVKLQHGSS 1246
Query: 1222 P 1222
P
Sbjct: 1247 P 1247
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1224 | ||||||
| UNIPROTKB|Q6YUU5 | 1245 | LOC_Os02g09720 "Putative multi | 0.508 | 0.499 | 0.565 | 0.0 | |
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.464 | 0.458 | 0.586 | 0.0 | |
| TAIR|locus:2088927 | 1240 | ABCB17 "ATP-binding cassette B | 0.520 | 0.513 | 0.501 | 0.0 | |
| TAIR|locus:2088942 | 1225 | ABCB18 "ATP-binding cassette B | 0.513 | 0.513 | 0.511 | 1.9e-309 | |
| TAIR|locus:504955759 | 1229 | ABCB22 "ATP-binding cassette B | 0.465 | 0.463 | 0.543 | 8.2e-307 | |
| TAIR|locus:2088912 | 1228 | ABCB16 "ATP-binding cassette B | 0.542 | 0.540 | 0.470 | 9.9e-302 | |
| UNIPROTKB|Q8GU81 | 1234 | mdr17 "Uncharacterized protein | 0.464 | 0.460 | 0.479 | 2.9e-289 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.967 | 0.940 | 0.418 | 4.5e-249 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.928 | 0.883 | 0.436 | 7.8e-245 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.926 | 0.843 | 0.419 | 5.2e-243 |
| UNIPROTKB|Q6YUU5 LOC_Os02g09720 "Putative multidrug resistance protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1801 (639.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 353/624 (56%), Positives = 466/624 (74%)
Query: 594 SSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNXXXXXXXXXXXXXXAIEWKRT 653
S+ S + +S FS + S + ++D N A EWK+
Sbjct: 615 SAVGQSSSHSMSRRFSAASRSSSARSLGDARDDDNTEKPKLPVPSFRRLLMLNAPEWKQA 674
Query: 654 XXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLI 713
I P+YAY +GS++S YF+ D +++K +TR Y LIF+GLA L+ + N+
Sbjct: 675 LMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIG 734
Query: 714 QHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADR 773
QHYNF MGE+L +R+RE+ML KI TFEIGWFD+DEN+S AIC++LA +A++VRS + DR
Sbjct: 735 QHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDR 794
Query: 774 MSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSE 833
M+L+IQ + +A T+ L++ WR+A+VMIAVQPL I CFY+R VL+KSMS+K+ +Q+E
Sbjct: 795 MALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAE 854
Query: 834 GSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTAS 893
S+LA+EA +N RTITAFSSQ+RIL LF ++ GP+KESI+QSWF+G+GL +S L T +
Sbjct: 855 SSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCT 914
Query: 894 ITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTIL 953
L FWY GR+M + +S K+LFQ F +L+STG+ IADAGSMT+D+AKG+ A+ ++F +L
Sbjct: 915 WALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVFAVL 974
Query: 954 DRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVG 1013
DR++EIDP++P+ + E KG ++++ V F+YPSRPD +IFKG TL I+ GK+ ALVG
Sbjct: 975 DRETEIDPDNPQGYKP--EKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALVG 1032
Query: 1014 QSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQN 1073
QSGSGKSTIIGLIERFYDP GSV +D R+IK+YNLR LR I LVSQEPTLFAGTIR+N
Sbjct: 1033 QSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIREN 1092
Query: 1074 IVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133
IVYG E A+EAEI AA ANAH+FIS+ +DGYDT+CGERGVQLSGGQKQRIA+ARA+LK
Sbjct: 1093 IVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQRIAIARAILK 1152
Query: 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVV 1193
NP ILLLDEATSALDS SE +VQEAL+++M+GRT VVVAHRLSTIQ D I V++ G VV
Sbjct: 1153 NPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTVV 1212
Query: 1194 EQGTQSSLLSMGNGGAYYSLIKMQ 1217
E+GT +SL++ G G Y+SL+ +Q
Sbjct: 1213 EKGTHASLMAKGLSGTYFSLVNLQ 1236
|
|
| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1756 (623.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 336/573 (58%), Positives = 441/573 (76%)
Query: 649 EWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTL 708
EWK+ I P+YAY LGS+VS YF+ ++K +TR+Y L F+GLA L+
Sbjct: 668 EWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVGLAVLSF 727
Query: 709 IANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRS 768
+ N+ QHYNFA MGE+L +R+RE+ML K+ TFE+GWFD+DEN+S AIC+RLA +A++VRS
Sbjct: 728 LINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRS 787
Query: 769 FIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAK 828
+ DRM+L++Q + ++A+T+ L++ WR+A+VMIAVQP+ I CFY+R VL+KSMS+KA
Sbjct: 788 LVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAI 847
Query: 829 KSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQF 888
K+Q E S+LA+EA +N RTITAFSSQ+RI+ + + + P++ESI+QSWF+G GL SQ
Sbjct: 848 KAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFGLAMSQS 907
Query: 889 LTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRT 948
LT+ + L FWY GR++ G ++ K LF+ F +L+STG+ IADAGSMT+D+AKGS A+ +
Sbjct: 908 LTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGS 967
Query: 949 IFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008
+F +LDR + IDPEDP E E G +E +V FSYP+RPD +IFK ++KIE GK+
Sbjct: 968 VFAVLDRYTSIDPEDPDGYET--ERITGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKS 1025
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068
A+VG SGSGKSTIIGLIERFYDP G V +D R+I+SY+LR LR IALVSQEPTLFAG
Sbjct: 1026 TAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAG 1085
Query: 1069 TIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126
TIR+NI+YG + EAEI +AA ANAH+FI+S +GYDTYCG+RGVQLSGGQKQRIA
Sbjct: 1086 TIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGGQKQRIA 1145
Query: 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVV 1186
+ARAVLKNP +LLLDEATSALDS SE +VQ+ALE++MVGRT VV+AHRLSTIQ D I V
Sbjct: 1146 IARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRLSTIQNCDAIAV 1205
Query: 1187 IKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219
+ GK+VE+GT SSLLS G G Y+SL+ +Q +
Sbjct: 1206 LDKGKLVERGTHSSLLSKGPTGIYFSLVSLQTT 1238
|
|
| TAIR|locus:2088927 ABCB17 "ATP-binding cassette B17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1629 (578.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 323/644 (50%), Positives = 444/644 (68%)
Query: 579 SLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISM---TGSFQMHSVENQNDKNFHDNXXX 635
SL + + +N S + LS F S GS V N +D +DN
Sbjct: 595 SLQQMENEESNVNINVSVTKDQVMSLSKDFKYSQHNSIGSTSSSIVTNVSDLIPNDNQPL 654
Query: 636 XXXXXXXXXXXAIEWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRL 695
EWK + P AY GSV+S +F+ ++K +TR+
Sbjct: 655 VPSFTRLMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRI 714
Query: 696 YCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAI 755
Y L+F+GLA + + N+ QHY FA MGE+L +R+RE+ML KI TFE+ WFD D+N+S AI
Sbjct: 715 YVLLFVGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAI 774
Query: 756 CARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYS 815
C+RLA +A++VRS + DRMSLL+Q + +A + L++ WR+AIVMI+VQPL + CFY+
Sbjct: 775 CSRLAKDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYT 834
Query: 816 RSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQ 875
+ VL+KS+SEKA K+Q E S+LA+EA +N RTITAFSSQ+RI+ L ++ +GP++ES+ +
Sbjct: 835 QRVLLKSLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHR 894
Query: 876 SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSM 935
SW +GI L +S+ L T + L FWY GR++ G + K F+ F + ++TG+ IADAG+M
Sbjct: 895 SWLAGIVLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTM 954
Query: 936 TSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMI 995
T+D+A+G A+ ++F +LDR + I+P++P + E KG I NV F+YP+RPD +I
Sbjct: 955 TTDLARGLDAVGSVFAVLDRCTTIEPKNPDGY--VAEKIKGQITFLNVDFAYPTRPDVVI 1012
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055
F+ +++I+ GK+ A+VG SGSGKSTIIGLIERFYDP G+V +D R+I+SY+LR LR
Sbjct: 1013 FENFSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKY 1072
Query: 1056 IALVSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
I+LVSQEP LFAGTIR+NI+YG + E+EI +AA ANAH+FI+S +GYDT CG++
Sbjct: 1073 ISLVSQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGDK 1132
Query: 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
GVQLSGGQKQRIA+ARAVLKNP +LLLDEATSALDS SE +VQ+ALE++MVGRT +++AH
Sbjct: 1133 GVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAH 1192
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
RLSTIQ D IVV+ GK+VE GT SSLL G G Y+SL +Q
Sbjct: 1193 RLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQ 1236
|
|
| TAIR|locus:2088942 ABCB18 "ATP-binding cassette B18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1636 (581.0 bits), Expect = 1.9e-309, Sum P(2) = 1.9e-309
Identities = 325/636 (51%), Positives = 438/636 (68%)
Query: 584 QTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNXXXXXXXXXXX 643
++ H + EG + S SP I T S + N + K D
Sbjct: 591 ESDHISVEEGQASSLSKDLKYSPKEFIHSTSSNIVRDFPNLSPK---DGKSLVPSFKRLM 647
Query: 644 XXXAIEWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGL 703
EWK + P Y+Y GS+VS YF+ ++K +TR+Y L+F+GL
Sbjct: 648 SMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGL 707
Query: 704 AFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEA 763
A T ++N+ QHY FA MGE+L +R+RE+ML KI TFE+ WFD+DEN+S AIC+RLA +A
Sbjct: 708 ALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDA 767
Query: 764 HLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSM 823
++VRS + DRMSLL+Q + S+ + L+++WR +IVM++VQP+ + CFY++ VL+KSM
Sbjct: 768 NMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSM 827
Query: 824 SEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGL 883
S A K Q E S+LA+EA +N RTITAFSSQ+RI++L + +GP+K+S +QSW +GI L
Sbjct: 828 SRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIML 887
Query: 884 FSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGS 943
+SQ L T L FWY G+++ G + K+ + F + STG+ IA+AG+MT D+ KGS
Sbjct: 888 GTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGS 947
Query: 944 SAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKI 1003
A+ ++F +LDR + I+PE+P + + KG I NV F+YP+RPD +IF+ ++ I
Sbjct: 948 DAVASVFAVLDRNTTIEPENPDGY--VPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDI 1005
Query: 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP 1063
E GK+ A+VG SGSGKSTII LIERFYDP G V +D R+I+S +LR LR IALVSQEP
Sbjct: 1006 EDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEP 1065
Query: 1064 TLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121
TLFAGTIR+NI+YG E+EI +AA ANAH+FI+S +GYDT CG+RGVQLSGGQ
Sbjct: 1066 TLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQ 1125
Query: 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKA 1181
KQRIA+ARAVLKNP +LLLDEATSALDS SE++VQ+ALE++MVGRT VV+AHRLSTIQK
Sbjct: 1126 KQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKC 1185
Query: 1182 DNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
D I V++NG VVE G SSLL+ G GAY+SL+ +Q
Sbjct: 1186 DTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
|
| TAIR|locus:504955759 ABCB22 "ATP-binding cassette B22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1636 (581.0 bits), Expect = 8.2e-307, Sum P(2) = 8.2e-307
Identities = 312/574 (54%), Positives = 428/574 (74%)
Query: 649 EWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTL 708
EWK ++P YAY GS+VS YF+ ++K +TR+Y L+F+GLA L
Sbjct: 657 EWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFVGLAVLCF 716
Query: 709 IANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRS 768
+ ++IQ Y+FA MGE+L +R+RE +L K+ TFE+ WFD+DEN+S +IC+RLA +A++VRS
Sbjct: 717 LISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAKDANVVRS 776
Query: 769 FIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAK 828
+ +R+SLL+Q + S+A TL L ++W+++IVMIA+QP+ +GCFY++ +++KS+S+KA
Sbjct: 777 LVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLKSISKKAI 836
Query: 829 KSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQF 888
K+Q E S+LA+EA +N RTITAFSSQ+RIL L + +GP++E+I+QSW +GI L +S+
Sbjct: 837 KAQDESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQSWLAGIVLATSRS 896
Query: 889 LTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRT 948
L T + L +WY R++ G ++ K F+ F L +STG+ IADAG+MT D+AKGS A+ +
Sbjct: 897 LMTCTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMTMDLAKGSDAVGS 956
Query: 949 IFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008
+F +LDR + I+PE P + + KG I+ NV F+YP+RPD +IFK ++ I+ GK+
Sbjct: 957 VFAVLDRYTNIEPEKPDGF--VPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKS 1014
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068
A+VG SGSGKSTIIGLIERFYDP G V +D R+I+SY+LR LR I LVSQEP LFAG
Sbjct: 1015 TAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAG 1074
Query: 1069 TIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126
TIR+NI+YG + E+EI +AA ANAH+FI + DGYDTYCG+RGVQLSGGQKQRIA
Sbjct: 1075 TIRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQLSGGQKQRIA 1134
Query: 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVV 1186
+ARAVLKNP +LLLDEATSALD+ SE +VQ+AL ++MVGRT VV+AHRLSTIQ D I V
Sbjct: 1135 IARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITV 1194
Query: 1187 IKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220
+ GKVVE GT SSLL+ G G Y+SL+ +Q +R
Sbjct: 1195 LDKGKVVECGTHSSLLAKGPTGVYFSLVSLQRTR 1228
|
|
| TAIR|locus:2088912 ABCB16 "ATP-binding cassette B16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1582 (562.0 bits), Expect = 9.9e-302, Sum P(2) = 9.9e-302
Identities = 325/691 (47%), Positives = 458/691 (66%)
Query: 536 DVLMQMNNG---EGGAYSKMVQLQQSAMRNEVASGSYNP-TKSKSHHSLMSAQTPHTPIN 591
D++ ++NG E G++ K++++ G Y + + + S +
Sbjct: 550 DIICVLHNGCIVETGSHDKLMEID----------GKYTSLVRLQQMKNEESCDNTSVGVK 599
Query: 592 EG--SSYQNSPIYPLSPT-FSISMTGSFQMHSVENQNDKNFHDNXXXXXXXXXXXXXXAI 648
EG SS +N Y +P + SM+ S V N +D D
Sbjct: 600 EGRVSSLRNDLDY--NPRDLAHSMSSSI----VTNLSDSIPQDKKPLVPSFKRLMAMNRP 653
Query: 649 EWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTL 708
EWK + P YAY G ++S +F+ + ++K TR+Y L+F GLA T
Sbjct: 654 EWKHALCGCLSASLGGAVQPIYAYSSGLMISVFFLTNHEQIKENTRIYVLLFFGLALFTF 713
Query: 709 IANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRS 768
++ Q Y+F+ MGE+L +R+RE+ML KI TFE+ WFD++EN+S AIC+RLA +A++VRS
Sbjct: 714 FTSISQQYSFSYMGEYLTKRIREQMLSKILTFEVNWFDEEENSSGAICSRLAKDANVVRS 773
Query: 769 FIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAK 828
+ +RMSLL+Q + +A T+ L++ WR IVMI+VQP+ I C+Y + VL+K+MS+KA
Sbjct: 774 LVGERMSLLVQTISTVMVACTIGLVIAWRFTIVMISVQPVIIVCYYIQRVLLKNMSKKAI 833
Query: 829 KSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQF 888
+Q E S+LA+EA +N RTIT FSSQ+RI+ L +GP++ES +QSW +GI L ++Q
Sbjct: 834 IAQDESSKLAAEAVSNIRTITTFSSQERIMKLLERVQEGPRRESARQSWLAGIMLGTTQS 893
Query: 889 LTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRT 948
L T + L FWY G+++ G + K F+ F + +TG+ IA+AG+MT+D+AKGS+++ +
Sbjct: 894 LITCTSALNFWYGGKLIADGKMVSKAFFELFLIFKTTGRAIAEAGTMTTDLAKGSNSVDS 953
Query: 949 IFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008
+FT+LDR++ I+PE+P I E KG I NV F+YP+RP+ +IF +++I GK+
Sbjct: 954 VFTVLDRRTTIEPENPDGY--ILEKIKGQITFLNVDFAYPTRPNMVIFNNFSIEIHEGKS 1011
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068
A+VG S SGKST+IGLIERFYDP G V +D R+I+SY+LR LR ++LVSQEPTLFAG
Sbjct: 1012 TAIVGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAG 1071
Query: 1069 TIRQNIVYGK--EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126
TIR+NI+YG+ E+EI +A ANAHEFI+S DGYDTYCG+RGVQLSGGQKQRIA
Sbjct: 1072 TIRENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQLSGGQKQRIA 1131
Query: 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVV 1186
+AR +LKNP ILLLDEATSALDS SE +VQ+ALE +MVG+T VV+AHRLSTIQ D I V
Sbjct: 1132 IARTILKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAV 1191
Query: 1187 IKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+ GKVVE GT +SLL+ G G+Y+SL+ +Q
Sbjct: 1192 LDKGKVVESGTHASLLAKGPTGSYFSLVSLQ 1222
|
|
| UNIPROTKB|Q8GU81 mdr17 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1431 (508.8 bits), Expect = 2.9e-289, Sum P(3) = 2.9e-289
Identities = 274/572 (47%), Positives = 402/572 (70%)
Query: 647 AIEWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFL 706
A EW++ + P YA +G +++A+F++D ++ + Y LIF L+ +
Sbjct: 665 APEWRQAVIGSLSALVYGSLQPIYAITIGGMIAAFFVQDLKEMNAIISRYALIFCSLSVI 724
Query: 707 TLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLV 766
+++ NL+QHYNFA MGEHLV+R+R ++LEKI TFE WFD++ N+S ++C+RL+NEA LV
Sbjct: 725 SIVVNLLQHYNFAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCSRLSNEASLV 784
Query: 767 RSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEK 826
++ +ADR+SLL+Q +A T+ L+V W++A+VMIAVQP + C+Y++ +++ ++S
Sbjct: 785 KTLVADRISLLLQTASGIIIAVTMGLIVAWKLALVMIAVQPTTMICYYAKKIVLSNVSRD 844
Query: 827 AKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSS 886
K+Q + +Q+A EA NHR +T+F ++L LF T + P K + K+SW +GI S
Sbjct: 845 LAKAQHQSTQIAIEAVYNHRMVTSFGCSSKVLQLFEHTQEEPLKRARKKSWVAGITTGLS 904
Query: 887 QFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAI 946
L+ S L FWY G++ G +S +F+ FF+L+STGK IADAGSMTSD+AKG++A+
Sbjct: 905 PCLSFLSWALDFWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGANAV 964
Query: 947 RTIFTILDRKSEIDPEDPKASEDIEE-PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEA 1005
++F +LDRKS I P++ + +D ++ +G IE K V F+YP+RP +I + +L ++A
Sbjct: 965 ASVFEVLDRKS-ISPQNSQVEKDNQKNKIQGRIEFKRVDFAYPTRPQCLILQDFSLDVKA 1023
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065
G ++ LVG+SG GKSTIIGLI+RFYD G+V VD +++ ++ R ALVSQEP +
Sbjct: 1024 GTSIGLVGRSGCGKSTIIGLIQRFYDVDRGAVKVDGMDVREMDILWYRGFTALVSQEPAI 1083
Query: 1066 FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125
F+G++R NI +GK A E EI +AA ANAHEFISS +DGY T CGE G+QLSGGQKQRI
Sbjct: 1084 FSGSVRDNIAFGKPEADEDEIVEAAKAANAHEFISSLKDGYHTDCGEHGLQLSGGQKQRI 1143
Query: 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV 1185
A+ARA+++NP ILLLDEATSALD+ SE +VQEAL+++M GRT +VVAHRL+TI+ D+I
Sbjct: 1144 AIARAIIRNPAILLLDEATSALDAQSEQVVQEALDRIMSGRTTIVVAHRLNTIKNVDSIA 1203
Query: 1186 VIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+ GKVVE+GT L+S GA+Y+L +Q
Sbjct: 1204 FLGEGKVVERGTYPHLMS--KKGAFYNLAALQ 1233
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2399 (849.5 bits), Expect = 4.5e-249, P = 4.5e-249
Identities = 523/1249 (41%), Positives = 773/1249 (61%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEKG 66
LF +AD D LL+ G+ G++ G P+ + +IN G + S+ D+V +
Sbjct: 34 LFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLR-RMTDEVSKYS 92
Query: 67 M------------------CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQV 108
+ CW T ERQ +R YL++VLRQ+VGFFD V
Sbjct: 93 LYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDARTG---DV 149
Query: 109 VTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIV 168
V ++++D +QDA+ EK+ N + +L++F+ ++V F+ +WR + ++PGI
Sbjct: 150 VFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLS-----IAVIPGIA 204
Query: 169 FGK-----VLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223
F L L ++ +D+Y AG IAEQAI+ +RTVYS+VGE + L +S A++ ++
Sbjct: 205 FAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLK 264
Query: 224 LGIKQGLTKGLLLG-SMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIM 282
LG K G+ KGL +G + G+ +WA W V + GG F A I+GG+ +
Sbjct: 265 LGYKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLG 324
Query: 283 SALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPD 342
+ NL S+ A ++ E+I + P I + G+ L + G IEFK+V FSYP+RPD
Sbjct: 325 QSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPD 384
Query: 343 T----------P---TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
P T +VG SGSGKSTV++L+ERFYDP +G +LLD IK LQLKWL
Sbjct: 385 VMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWL 444
Query: 390 RSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449
R Q+GLVNQEP LF+T+I ENIL GKP A+M V AA +AN H FI L +GY T+VG+
Sbjct: 445 RDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGE 504
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIA 509
G+QLSGGQKQRIAIARA++++PKILLLDEATSALDA SE IVQEALD+ GRT +++A
Sbjct: 505 RGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVA 564
Query: 510 HRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSY 569
HRLSTIR D+I V+Q G+V+E+G+HD L+ G GAY+ +++ Q+ A RN G
Sbjct: 565 HRLSTIRCVDMIAVIQQGQVVETGTHDELLA--KGSSGAYAALIRFQEMA-RNRDFRGP- 620
Query: 570 NPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNF 629
+ KS+S S T + GS +N LS ++S G +M S ND+ +
Sbjct: 621 STRKSRSSRLSNSLSTRSLSLRSGS-LRN-----LSYSYSTGADGRIEMVS-NADNDRKY 673
Query: 630 HDNXXXXXXXXXXXXXXAIEWKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKL 689
A EW T I P++A + +++ ++ +D + +
Sbjct: 674 P---APKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAM 730
Query: 690 KSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDE 749
+ +TR Y I++G ++A L+QHY F+IMGE+L RVR ML I ++GWFDQ+E
Sbjct: 731 ERKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEE 790
Query: 750 NTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLN 809
N S+ + ARL+ +A V+S IA+R+S+++Q S +++ + ++ WRVA++++ PL
Sbjct: 791 NNSSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLL 850
Query: 810 IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPK 869
+ +++ + MK + K+ ++ S +A E +N RT+ AF++QD++L LF ++ P+
Sbjct: 851 VLANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQ 910
Query: 870 KESIKQSWFSGIGLFS-SQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKN 928
S+++S SG LF SQ AS L WY ++ + + ++ + F +L+ T
Sbjct: 911 MHSLRRSQISG-ALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANT 969
Query: 929 IADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYP 988
+A+ S+ +I +G +IR++F IL+ ++ IDP++P+ +E +E +G I+ ++V F+YP
Sbjct: 970 VAETVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPE-TEPVES-VRGDIDFRHVDFAYP 1027
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
SRPD M+FK +L+I AG++ ALVG SGSGKST+I LIERFYDP +G VM+D ++I+ N
Sbjct: 1028 SRPDVMVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLN 1087
Query: 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
+R LR I LV QEP LFA +I +NI YGK+ ATE E+ +AA +AN H F+S+ +GY T
Sbjct: 1088 VRSLRLKIGLVQQEPVLFATSIFENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKT 1147
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
GERGVQLSGGQKQRIA+ARAVLK+P +LLLDEATSALD+ SE ++QEALE++M GRT
Sbjct: 1148 PVGERGVQLSGGQKQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTA 1207
Query: 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
V+VAHRLSTI+ D+I V+++G+VVEQG+ L+S +G AY L+++Q
Sbjct: 1208 VLVAHRLSTIRGVDSIAVVQDGRVVEQGSHGELVSRPDG-AYSRLLQLQ 1255
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2359 (835.5 bits), Expect = 7.8e-245, P = 7.8e-245
Identities = 510/1168 (43%), Positives = 725/1168 (62%)
Query: 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKI 127
CW + ERQ +++R++YL++ L Q++ FFD + VV I +DA +QDA++EK+
Sbjct: 110 CWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTS---DVVFAINTDAVMVQDAISEKL 166
Query: 128 PNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAA 187
N + ++ +F+ +V F W+ L V G + L L + +++ A
Sbjct: 167 GNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQA 226
Query: 188 GGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMG-MTYGAW 246
G I EQ + IR V +FVGE + + +S AL+ +LG K GL KG+ LG+ + + +
Sbjct: 227 GNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKTGLAKGMGLGATYFVVFCCY 286
Query: 247 AFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306
A W G LV GGL ++GG+ + + P+++ ++A AA +IF +ID
Sbjct: 287 ALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPSMAAFAKAKVAAAKIFRIID 346
Query: 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT----------P---TIGLVGSSG 353
P I E G L + G +E K+VDFSYP+RPD P TI LVGSSG
Sbjct: 347 HKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSG 406
Query: 354 SGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413
SGKSTV+SL+ERFYDP G +LLDG +K L+L+WLR Q+GLV+QEP LF+TSIKENIL+
Sbjct: 407 SGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALFATSIKENILL 466
Query: 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473
G+P A + +AA+ AN H FI+KL DG++T+VG+ G+QLSGGQKQRIAIARA++++P
Sbjct: 467 GRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPA 526
Query: 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
ILLLDEATSALD+ESE++VQEALD+ GRT +IIAHRLSTIRKADL+ VLQ G V E G
Sbjct: 527 ILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIG 586
Query: 534 SHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPI-NE 592
+HD L + GE G Y+K++++Q++A +E A N KS + S + + +PI
Sbjct: 587 THDELF--SKGENGVYAKLIKMQEAA--HETAMS--NARKSSARPS-SARNSVSSPIMTR 639
Query: 593 GSSYQNSPIYPLSPTFSIS-MTGSFQMHSVEN-QNDK-NFHDNXXXXXXXXXXXXXXAIE 649
SSY SP FS S + S S N +N+K F D E
Sbjct: 640 NSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANSFWRLAKMNSP---E 696
Query: 650 WKRTXXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLI 709
WK + +AY L +V+S Y+ D + + YC + +GL+ L+
Sbjct: 697 WKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYCYLLIGLSSAALV 756
Query: 710 ANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSF 769
N +QH + I+GE+L +RVREKML + E+ WFDQ+EN SA I ARLA +A+ VRS
Sbjct: 757 FNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAARLALDANNVRSA 816
Query: 770 IADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKK 829
I DR+S+++Q +A T ++ WR+A+V++AV P+ + + + M S +
Sbjct: 817 IGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEA 876
Query: 830 SQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFL 889
+ ++G+QLA EA N RT+ AF+S+ +I+ L+ ++ P K + +G G +QF
Sbjct: 877 AHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQIAGSGYGVAQFC 936
Query: 890 TTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTI 949
AS L WYA ++ G+ + + F +LM + A+ ++ D KG A+R++
Sbjct: 937 LYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSV 996
Query: 950 FTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTV 1009
F +LDRK+EI+P+DP + + + +G +ELK++ FSYPSRPD IF+ L+L+ AGKT+
Sbjct: 997 FELLDRKTEIEPDDPDTTP-VPDRLRGEVELKHIDFSYPSRPDIQIFRDLSLRARAGKTL 1055
Query: 1010 ALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069
ALVG SG GKS++I LI+RFY+P SG VM+D ++I+ YNL+ +R IA+V QEP LF T
Sbjct: 1056 ALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIVPQEPCLFGTT 1115
Query: 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129
I +NI YG E ATEAEI +AA LA+AH+FIS+ +GY TY GERGVQLSGGQKQRIA+AR
Sbjct: 1116 IYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQLSGGQKQRIAIAR 1175
Query: 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKN 1189
A+++ I+LLDEATSALD+ SE VQEAL++ GRT +VVAHRLSTI+ A I VI +
Sbjct: 1176 ALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRLSTIRNAHVIAVIDD 1235
Query: 1190 GKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
GKV EQG+ S LL G Y +I++Q
Sbjct: 1236 GKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2293 (812.2 bits), Expect = 5.2e-243, Sum P(2) = 5.2e-243
Identities = 489/1165 (41%), Positives = 717/1165 (61%)
Query: 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQXXXXXXFQVVTNITSDAHSIQDAVAEKI 127
CW T ERQ++R+R+ YL + L Q+V FFD V+ I +DA +QDA++EK+
Sbjct: 176 CWMWTGERQSTRMRIRYLHAALHQDVSFFDTDVRTS---DVIHAINADAVVVQDAISEKL 232
Query: 128 PNCLAHLTSFIGSILVAFLLSWRXXXXXXPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAA 187
N + +L +F+ +V F +W+ L V G + L L ++ +DA A
Sbjct: 233 GNLIHYLATFVSGFVVGFTAAWQLALVTLAVVPLIAVIGGLSAAALAKLSSRSQDALSDA 292
Query: 188 GGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMT-YGAW 246
GIAEQA++ IR V SFVGE + ++ +S AL +G + G KG+ LG T + +
Sbjct: 293 SGIAEQALAQIRIVQSFVGEERVMRAYSAALAVAQRIGYRSGFAKGIGLGGTYFTVFCCY 352
Query: 247 AFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306
A W G LV GGL ++GG+ + + P+++ ++A AA +IF M++
Sbjct: 353 ALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQSAPSMAAFAKARVAAAKIFRMME 412
Query: 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT----------P---TIGLVGSSG 353
P + E E G L + G +E +DV+FSYP+RPD P TI LVGSSG
Sbjct: 413 HKP--SMEREGGVELEAVTGRVELRDVEFSYPSRPDVGILRGLSLSVPAGKTIALVGSSG 470
Query: 354 SGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413
SGKSTV+SL+ERFY+P G ILLDGH ++ L L+WLR Q+GLV+QEP LF+T+I+EN+L+
Sbjct: 471 SGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLRRQIGLVSQEPALFATTIRENLLL 530
Query: 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473
G+ GA+ E + +AA+ AN H FI+KL D Y T+VG+ G+QLSGGQKQRIAIARA++R+P
Sbjct: 531 GRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGERGLQLSGGQKQRIAIARAMLRNPA 590
Query: 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
ILLLDEATSALD+ESE++VQEALD+ GRT ++IAHRLSTIRKADL+ VLQ G + E G
Sbjct: 591 ILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQGGAISEVG 650
Query: 534 SHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEG 593
+HD LM G+G Y++++++Q+ A +E A + + ++ + S +P I
Sbjct: 651 THDELMA--RGDG-TYARLIRMQEQA--HEAALVAARRSSARPSSARNSVSSPI--ITRN 703
Query: 594 SSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNXXXXXXXXXXXXXXAIEWKRT 653
SSY SP Y + + +TG V+++ + H + EW
Sbjct: 704 SSYGRSP-YSRRLSDADFITGLGL--GVDSKQQQQQHYFRVQASSFWRLAKMNSPEWGYA 760
Query: 654 XXXXXXXXXXXXIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLI 713
+AY L +V+S Y+ D + + + YC + +G++ L+ N +
Sbjct: 761 LVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCYLLIGMSSAALLFNTV 820
Query: 714 QHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADR 773
QH + +GE+L +RVRE+ML + EI WFD ++N+SA I ARLA +A VRS I DR
Sbjct: 821 QHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARLALDAQNVRSAIGDR 880
Query: 774 MSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSE 833
+S+++Q +A T ++ WR+A+V++AV PL + + + +K S +++ +
Sbjct: 881 ISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLKGFSGDLERAHAR 940
Query: 834 GSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTAS 893
+Q+A EA N RT+ AF S+ +I+ LF + GP + + +G G +QFL AS
Sbjct: 941 ATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIAGSGYGVAQFLLYAS 1000
Query: 894 ITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTIL 953
L WYA ++ G+ + + F +LM + A+ ++ D KG A++ +F +
Sbjct: 1001 YALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDFVKGGRAMQAVFEAM 1060
Query: 954 DRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVG 1013
DR++EI+P+D A+ E P +G +ELK+V F+YPSRP+ +F+ L+L+ AG+T+ALVG
Sbjct: 1061 DRRTEIEPDDVDAAAVPERP-RGEVELKHVDFAYPSRPEVQVFRDLSLRARAGRTLALVG 1119
Query: 1014 QSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQN 1073
SG GKS+++ L++RFY+P SG V++D R+++ +NLR LR +ALV QEP LFA TI N
Sbjct: 1120 ASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVPQEPFLFAATIHDN 1179
Query: 1074 IVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133
I YG+E ATEAE+ +AA ANAH+FIS+ +GY T GERGVQLSGGQ+QRIA+ARA++K
Sbjct: 1180 IAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRIAIARALVK 1239
Query: 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
ILLLDEATSALD+ SE VQEAL GRT +VVAHRL+T++ A I VI +GKV
Sbjct: 1240 QAPILLLDEATSALDAESERSVQEALASSSGSGRTTIVVAHRLATVRNAHTIAVIDDGKV 1299
Query: 1193 VEQGTQSSLLSMGNGGAYYSLIKMQ 1217
EQG+ S LL+ G Y ++++Q
Sbjct: 1300 AEQGSHSHLLNHHPDGCYARMLQLQ 1324
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3453 | 0.9689 | 0.8707 | yes | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3467 | 0.9648 | 0.9255 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3438 | 0.9648 | 0.9226 | yes | no |
| Q6YUU5 | MDR_ORYSJ | No assigned EC number | 0.5301 | 0.9640 | 0.9477 | yes | no |
| Q9LHD1 | AB15B_ARATH | No assigned EC number | 0.5267 | 0.9722 | 0.9596 | yes | no |
| P06795 | MDR1B_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3500 | 0.9656 | 0.9263 | yes | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.3737 | 0.9616 | 0.8425 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00030719001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (1242 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1224 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-134 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-130 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-128 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-118 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-118 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-117 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-115 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-114 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-109 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-105 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-105 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-102 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-102 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-99 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-94 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-94 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-91 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-91 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-91 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-90 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-86 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-84 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-84 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-83 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-81 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-80 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-79 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-78 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-78 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-73 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-72 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-72 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-71 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-69 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-69 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-68 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-66 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-65 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-65 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-65 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-65 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-64 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-63 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-63 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-62 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-62 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-61 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-60 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-59 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-57 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-57 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-56 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-56 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-55 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-53 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-53 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-52 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-52 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-52 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-50 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-48 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-48 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-48 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-47 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-47 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-47 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-46 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-45 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-45 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-44 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-42 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-42 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-41 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-40 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-40 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-40 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-40 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-40 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-39 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-39 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-39 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-39 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-39 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-39 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-38 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-38 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-38 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-38 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-37 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-37 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-37 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-37 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-37 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-36 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-36 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-36 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-35 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-35 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-34 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-34 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-34 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-34 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-34 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-33 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-33 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-33 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-32 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-32 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-32 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-32 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-32 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-32 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-32 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-32 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-32 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-32 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 6e-32 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-31 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-31 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-30 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-30 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-30 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-30 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-30 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-29 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-29 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-29 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-29 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-29 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 9e-29 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-29 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-28 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-28 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-28 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-28 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-28 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-28 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-28 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-28 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-28 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-28 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 7e-28 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-28 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-27 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-27 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-27 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-27 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-27 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-27 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-27 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-27 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-27 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-27 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-27 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-26 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-26 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-26 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-26 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-26 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-26 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-26 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-26 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-26 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-26 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-26 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-26 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-25 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-25 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-25 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-25 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-25 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-25 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-25 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-25 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-25 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-25 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-25 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-25 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-25 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-25 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-25 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 7e-25 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-25 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-25 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-25 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-24 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-24 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-24 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-24 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-24 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-24 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-24 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-24 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-24 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-24 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-24 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-24 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-24 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 6e-24 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-24 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-23 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-23 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-23 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-23 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-23 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-23 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-23 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-23 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-23 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-23 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-23 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-23 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-23 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-23 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-23 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-22 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-22 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-22 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-22 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-22 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-22 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-22 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-22 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-22 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-22 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-22 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-22 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-22 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-22 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-22 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-22 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-21 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-21 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-21 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-21 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-21 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-21 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-21 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-21 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-21 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-21 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-21 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-21 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-21 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-21 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-21 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-21 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-21 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-21 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-21 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-20 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-20 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-20 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-20 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-20 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-20 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-20 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-20 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-20 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-20 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-20 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-20 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 4e-20 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-20 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-20 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-20 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-20 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-20 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 6e-20 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-20 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-20 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-20 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-20 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-20 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-20 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-19 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-19 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-19 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-19 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-19 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-19 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-19 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-19 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-19 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-19 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-19 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-19 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 9e-19 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-18 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-18 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-18 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-18 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-18 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-18 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-18 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-18 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-18 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-18 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-18 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-18 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-17 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-17 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-17 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-17 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-17 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-17 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-17 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-17 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-17 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-17 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-17 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-17 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-16 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-16 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-16 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-16 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-16 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-16 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-16 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-16 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-16 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-16 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-16 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-16 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-15 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-15 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-15 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-15 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-15 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-15 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-15 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-14 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-14 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-14 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-14 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-14 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-13 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-13 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-13 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-13 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-13 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-13 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-13 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 8e-13 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-13 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-12 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-12 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-12 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-12 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-12 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-11 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-11 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-11 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 8e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-11 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-11 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-11 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-10 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-09 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 8e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-08 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 5e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 6e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 7e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-06 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-06 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 4e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 8e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 3e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 7e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 9e-05 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.002 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.003 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 0.003 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 408 bits (1051), Expect = e-134
Identities = 153/240 (63%), Positives = 182/240 (75%), Gaps = 2/240 (0%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE KNV F YPSRPD I KGL+L I GKTVALVG SG GKST++ L+ERFYDP SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D +I+ NLR LRS I LVSQEP LF GTI +NI YGK AT+ E+ +AA AN H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
FI S DGYDT GERG QLSGGQKQRIA+ARA+L+NP ILLLDEATSALD+ SE LVQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AL++ M GRT +V+AHRLSTI+ AD I V++NG+VVEQGT L++ G Y L+K Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA--QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 398 bits (1024), Expect = e-130
Identities = 157/242 (64%), Positives = 188/242 (77%), Gaps = 17/242 (7%)
Query: 328 IEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNI 374
IEFK+V F YP+RPD P T+ LVGSSG GKSTV+SLLERFYDP G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 375 LLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHD 434
LLDG I+ L L+WLRSQ+GLV+QEP+LF +I ENI GKP A+ E V +AA+ AN+HD
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
FIM L DGY+T VG+ G QLSGGQKQRIAIARAL+R+PKILLLDEATSALDAESE++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 495 ALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554
ALD+A +GRT I+IAHRLSTIR ADLI VLQ+G+V+E G+HD LM + G Y+K+V+
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA----QKGVYAKLVK 236
Query: 555 LQ 556
Q
Sbjct: 237 AQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-128
Identities = 201/584 (34%), Positives = 321/584 (54%), Gaps = 23/584 (3%)
Query: 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYC 697
SLLR L LL L S + +G ++ A L+
Sbjct: 2 SLLRRLLKYLKYK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LL 55
Query: 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICA 757
L+ L LA L + +Q Y + +G+ +V +R + EK+ + +FD+ S + +
Sbjct: 56 LLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLIS 113
Query: 758 RLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRS 817
RL N+ V + ++ + L+ + L ++WR+A++++ + PL S
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL---LALVLS 170
Query: 818 VLMKSMSEKAKKSQSEGSQLAS---EATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874
+L + + +++ + +L + E+ + R I AF ++DR L F E + ++ +++
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGS 934
S + L++ L G ++ G ++ L L+ I G
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 935 MTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQM 994
+ S + + S+A +F +LD + E+ + D + T G IE +NV FSYP +
Sbjct: 291 VVSLLQRASAAAERLFELLDEEPEV-----EDPPDPLKDTIGSIEFENVSFSYP--GKKP 343
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K ++ IE G+ VA+VG SGSGKST+I L+ R YDP SG +++D +I+ +L LR
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
I +VSQ+P LF+GTIR+NI G+ AT+ EI +A LANAHEFI++ DGYDT GERG
Sbjct: 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERG 463
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174
V LSGGQ+QR+A+ARA+L+NP IL+LDEATSALD+ +E L+Q+AL+K++ GRT +++AHR
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHR 523
Query: 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218
LSTI+ AD I+V+ NG++VE+GT LL+ GG Y L + Q
Sbjct: 524 LSTIKNADRIIVLDNGRIVERGTHEELLA--KGGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 378 bits (972), Expect = e-118
Identities = 186/591 (31%), Positives = 311/591 (52%), Gaps = 56/591 (9%)
Query: 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVD 60
+ L +Y K LLL + + +++ L ++ +I+ + + +
Sbjct: 1 LSLLRRLLKYLKYK---LLLLAILLLLLSALLSLLLPLLIGRIID-----ALLADLGELL 52
Query: 61 KVPE---------------KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSST 105
++ + +R ++ + +R + + +LR + FFD S
Sbjct: 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGD-- 110
Query: 106 FQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVP 165
+++ +T+D ++ + V+ + + IGS+++ F LSWRLAL L L +
Sbjct: 111 --LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168
Query: 166 GIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELG 225
+ + + L + ++A +++S IR + +F E + LKRF A +
Sbjct: 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRAN 228
Query: 226 IKQGLTKGLLLGSMG-MTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILG-GVGIMS 283
++ + LL M ++ +G LV G + V + + + +++
Sbjct: 229 LRASRLEALLAPLMLLLSSLGTVLVLALGGFLVL-----SGSLTVGALAAFILYLLRLLT 283
Query: 284 ALPNLSF----ISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPT 339
+ L + +A+ AA R+FE++D P + + L G IEF++V FSYP
Sbjct: 284 PILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---PLKDTIGSIEFENVSFSYPG 340
Query: 340 RPDT-----------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW 388
+ + +VG SGSGKST+I LL R YDP G IL+DG I+ + L
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400
Query: 389 LRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
LR ++G+V+Q+P+LFS +I+ENI +G+P A+ E + +A + AN H+FI L DGY+T VG
Sbjct: 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
+ GV LSGGQ+QR+AIARAL+R+P IL+LDEATSALD E+E ++Q+AL + +GRT +II
Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520
Query: 509 AHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSA 559
AHRLSTI+ AD I VL +GR++E G+H+ L+ +GG Y+++ Q Q A
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVERGTHEELLA----KGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 377 bits (971), Expect = e-118
Identities = 199/509 (39%), Positives = 293/509 (57%), Gaps = 38/509 (7%)
Query: 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129
T ER + IR ++ FFD S +VV+ +T+D +Q + +
Sbjct: 83 TWLGERVVADIRRAVFAHLISLSPSFFDKNRSG----EVVSRLTTDTTLLQSVIGSSLSM 138
Query: 130 CLAHLTSFIGSILVAFLLSWRLA---LAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEA 186
L + IG +++ F+ S +L L A+P ++P ++FG+ ++ L + +D
Sbjct: 139 ALRNALMCIGGLIMMFITSPKLTSLVLLAVPL---VLLPILLFGRRVRKLSRESQDRIAD 195
Query: 187 AGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLL-GSMGMTYGA 245
AG A + + +IRTV +F E RF A+ K E ++ T+ LL + + +GA
Sbjct: 196 AGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGA 255
Query: 246 WAFQSWVGSVLV----TERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRI 301
WVG+ V G G VF A + + G +G +S + + +A AA R+
Sbjct: 256 IVGVLWVGAHDVIAGKMSAGTLGQFVFYAVM--VAGSIGTLSEV--WGELQRAAGAAERL 311
Query: 302 FEMIDRVPVINSEDEIGKTLAY-LRGEIEFKDVDFSYPTRPDTP-------------TIG 347
E++ P I KTL LRGEIEF+ V+F+YP RPD P T+
Sbjct: 312 IELLQAEPDI-KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVA 370
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407
LVG SG+GKST+ LL RFYDP G ILLDG +++L LR++M LV Q+P+LF+ S+
Sbjct: 371 LVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430
Query: 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA 467
ENI G+P A+ E V AA+AA+ H+FI L +GY+T +G+ GV LSGGQ+QRIAIARA
Sbjct: 431 MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490
Query: 468 LIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
+++D ILLLDEATSALDAESE++VQ+AL+ +GRT +IIAHRL+T+ KAD I V+ G
Sbjct: 491 ILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQG 550
Query: 528 RVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
R++ G+H L+ +GG Y+++ +LQ
Sbjct: 551 RIVAQGTHAELIA----KGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-117
Identities = 210/585 (35%), Positives = 312/585 (53%), Gaps = 63/585 (10%)
Query: 7 LFRYADGKDKLL---LLFGTVGSIGDGMMTP-LTMYILSMVINELGTSDISISI------ 56
L + L +F T+ S+G M P T ++ + + G ++ +I
Sbjct: 152 LLGLSGRDWPWLISAFVFLTLSSLG-EMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLL 210
Query: 57 EAVDKVPE--KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITS 114
V +G + T R RIR + +S+LRQ++GFFD + T ++ + ++S
Sbjct: 211 SIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE----NKTGELTSRLSS 266
Query: 115 DAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLK 174
D ++ +++ + L +L +G + LS RL + L L + VFGK +
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 175 DLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL 234
L + ++A A +AE+A+S +RTV SF E RF AL + ++L ++ L
Sbjct: 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386
Query: 235 LLGS-----MGMTYGAWAFQSWVGSVLVTE-RGEKGGLV-FVAGICTILGGVGIMSALPN 287
L + M + + G LV + G LV F+ L + A+
Sbjct: 387 YLWTTSVLGMLIQVLVL----YYGGQLVLTGKVSSGNLVSFL------LYQEQLGEAVRV 436
Query: 288 LSFI----SQATTAATRIFEMIDRVPVINSEDEIGKTLAY--LRGEIEFKDVDFSYPTRP 341
LS++ QA A+ ++FE +DR P I + TLA L G IEF+DV FSYP RP
Sbjct: 437 LSYVYSGMMQAVGASEKVFEYLDRKPNI----PLTGTLAPLNLEGLIEFQDVSFSYPNRP 492
Query: 342 DTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW 388
D P + LVG SGSGKSTV +LL+ Y P G +LLDG + + +
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552
Query: 389 LRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
L Q+ LV QEP+LFS S++ENI G E ++ AA+AAN HDFIM+ +GY+T+VG
Sbjct: 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG 612
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
+ G QLSGGQKQRIAIARAL+R P++L+LDEATSALDAE E+++QE ++ RT+++I
Sbjct: 613 EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLI 670
Query: 509 AHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553
AHRLST+ +AD I VL+ G V+E G+H LM+ + G Y +V
Sbjct: 671 AHRLSTVERADQILVLKKGSVVEMGTHKQLME----DQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 375 bits (966), Expect = e-115
Identities = 189/596 (31%), Positives = 301/596 (50%), Gaps = 53/596 (8%)
Query: 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFI----------KDDSK 688
L RLL +S +W + A LG + ++ K
Sbjct: 149 LFRLLGLSGRDWPWLIS---------AFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA 199
Query: 689 LKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQD 748
L S CL+ + + +N+ + + R+RE + + ++G+FD
Sbjct: 200 LASAIFFMCLLSIASSVSA--GLRGGSFNYTM--ARINLRIREDLFRSLLRQDLGFFD-- 253
Query: 749 ENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPL 808
EN + + +RL+++ + ++ +++L++ L ++ R+ +V + PL
Sbjct: 254 ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313
Query: 809 NIGCFYSRSVLMK---SMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETM 865
F + V K +SE+ +++ ++ +Q+A EA + RT+ +F++++ F+E
Sbjct: 314 ---VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKE-- 368
Query: 866 KGPKKESIKQSW----FSGIGLF-SSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFF 920
E Q + G ++ L L +Y G+++ G VS L F
Sbjct: 369 ---ALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVS--F 423
Query: 921 LL--MSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFI 978
LL G+ + + S + + A +F LDRK P P +G I
Sbjct: 424 LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK----PNIPLTGTLAPLNLEGLI 479
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
E ++V FSYP+RPD + KGLT + G+ VALVG SGSGKST+ L++ Y P G V+
Sbjct: 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539
Query: 1039 VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098
+D + Y+ L +ALV QEP LF+G++R+NI YG + EI AA ANAH+F
Sbjct: 540 LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDF 599
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
I +GYDT GE+G QLSGGQKQRIA+ARA+++ P +L+LDEATSALD+ E L+QE+
Sbjct: 600 IMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES 659
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+ RT +++AHRLST+++AD I+V+K G VVE GT L M + G Y L+
Sbjct: 660 RSRA--SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQL--MEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-114
Identities = 184/542 (33%), Positives = 297/542 (54%), Gaps = 21/542 (3%)
Query: 682 FIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFE 741
F KD S L + Y L +A + + + Y +GE +V +R + + +
Sbjct: 49 FSKDSSGLLNR---YFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLS 105
Query: 742 IGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIV 801
+FD+ N S + +RL + L++S I +S+ ++ + + + ++ +
Sbjct: 106 PSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163
Query: 802 MIAVQPLNIG--CFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILD 859
++ PL + + R V + +S +++ ++ A E RT+ AF +D
Sbjct: 164 VLLAVPLVLLPILLFGRRV--RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERS 221
Query: 860 LF----RETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL 915
F + + ++ ++ + I + L +I W + G +S L
Sbjct: 222 RFGGAVEKAYEAARQRIRTRALLTAIVIV----LVFGAIVGVLWVGAHDVIAGKMSAGTL 277
Query: 916 FQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTK 975
Q F + +I + ++ + + A + +L + +I P + + P +
Sbjct: 278 GQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA--PAHPKTLPVPLR 335
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G IE + V F+YP+RPDQ GL L + G+TVALVG SG+GKST+ L+ RFYDPQSG
Sbjct: 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANA 1095
+++D +++ + +LR+ +ALV Q+P LFA ++ +NI YG+ AT+ E+ AA A+A
Sbjct: 396 RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHA 455
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
HEFIS+ +GYDTY GERGV LSGGQ+QRIA+ARA+LK+ ILLLDEATSALD+ SE LV
Sbjct: 456 HEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515
Query: 1156 QEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215
Q+ALE +M GRT +++AHRL+T+ KAD IVV+ G++V QGT + L + GG Y L +
Sbjct: 516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL--IAKGGLYARLAR 573
Query: 1216 MQ 1217
+Q
Sbjct: 574 LQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-109
Identities = 132/236 (55%), Positives = 170/236 (72%), Gaps = 3/236 (1%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E KNV F YP + + ++L I AG+TVALVG SGSGKST++ LI RFYD SG +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D +++ Y L LR I LVSQ+ LF T+ +NI YG+ AT E+ +AA ANAHE
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
FI +GYDT GERGV+LSGGQ+QRIA+ARA+LK+P IL+LDEATSALD+ SE LVQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213
ALE++M RT V+AHRLSTI+ AD IVV+++GK+VE+GT LL+ GG Y L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-105
Identities = 177/510 (34%), Positives = 263/510 (51%), Gaps = 51/510 (10%)
Query: 77 ASRIRME----YLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLA 132
R+ +E + + +LR + +F+ ++ +V + I++ + I +
Sbjct: 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-----RELEQIREFLTGSILTLII 276
Query: 133 HLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAE 192
L + + V FL SW+L L L L ++ ++F +L+ + +
Sbjct: 277 DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV 336
Query: 193 QAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLL---------LGSMGMTY 243
+ I I TV + E + ++ L K + +G K +L L S+ +
Sbjct: 337 ETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLIL- 395
Query: 244 GAWAFQSWVGSVLVTERGEK--GGLVFVAGICTILGGV-GIMSALPNLSF-ISQATTAAT 299
W G++LV E GE G LV + G ++ L L QA A
Sbjct: 396 -------WFGAILVLE-GELTLGQLVA---FNMLAGYFISPITRLSQLWTDFQQAKVALE 444
Query: 300 RIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP------------TIG 347
R+ +++D P D+ L L+GEIEF++V F Y +
Sbjct: 445 RLGDILDT-PPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVA 503
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407
+VG SGSGKST++ LL Y P +G ILLDG + + L LR Q+G V Q+P LFS SI
Sbjct: 504 IVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563
Query: 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA 467
+ENI +G P A+ E +++AAQ A H+FI L GY+T VG+ G LSGGQ+QR+A+ARA
Sbjct: 564 RENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARA 623
Query: 468 LIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527
L+ PKILLLDEATSALD E+E I+ + L Q QGRT+IIIAHRLSTIR AD I VL G
Sbjct: 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683
Query: 528 RVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557
+++E GSH+ L+ +GG Y+++ Q Q+
Sbjct: 684 KIVEQGSHEELLA----QGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 363 bits (932), Expect = e-105
Identities = 273/940 (29%), Positives = 440/940 (46%), Gaps = 170/940 (18%)
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
VV ++ +HDF+ L D YET VG +LSGGQKQRI+IARA+IR+PKIL+LDEATS
Sbjct: 549 VVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608
Query: 483 ALDAESERIVQEALD--QASQGRTMIIIAHRLSTIRKADLIGVLQS-------------- 526
+LD +SE +VQ+ ++ + ++ R IIIAHRLSTIR A+ I VL +
Sbjct: 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGE 668
Query: 527 ---------------------------------GRVIESGSHDVLMQMNNGEGGAYSKMV 553
+IE G+HD LM+ NG Y M+
Sbjct: 669 DPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNG---IYYTMI 725
Query: 554 QLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMT 613
Q+ + + + + + KS + ++ + P + ++ S S
Sbjct: 726 NNQKVSSKKSSNNDNDKDSDMKSS-AYKDSERGYDPDEMNGNSKHE-------NESASNK 777
Query: 614 GSFQMHSVENQNDKN-----------FHDNSHSPSSLLRLLRMSAIEWKRTL-LGCLGSA 661
S +M S EN ++ N F +P++L R++ +K+ + + L
Sbjct: 778 KSCKM-SDENASENNAGGKLPFLRNLFKRKPKAPNNL-RIVYREIFSYKKDVTIIALSIL 835
Query: 662 GSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIM 721
+G +YP +A VS F D + L++ + Y L L +A I+ +++Y ++
Sbjct: 836 VAGGLYPVFALLYAKYVSTLF--DFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVI 893
Query: 722 GEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVF 781
GE + + ++ ++ E I EI +FDQD++ + A + + HL+++ + + + +
Sbjct: 894 GEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFI 953
Query: 782 FSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMS-EKAKKSQSEG------ 834
++ +S VA V+ + + F R+ L + EK + +Q
Sbjct: 954 VLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNS 1013
Query: 835 --------SQLASEATTNHRTITAFSSQDRILDLFRETM----KGPKKESIKQSWFSGIG 882
S L EA N T+ + +D +L + + KG K++++ S G
Sbjct: 1014 DDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFS 1073
Query: 883 LFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKG 942
S+Q + +W+ ++ +G + ++ F + TG S+ D
Sbjct: 1074 Q-SAQLFIN---SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENA 1129
Query: 943 SSAIRTIFTILDRKSEIDPEDP-----KASEDIEEPTKGFIELKNVFFSYPSRPDQMIFK 997
+ + ++ RKS ID D K DI KG IE+ +V F Y SRP+ I+K
Sbjct: 1130 KLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDI----KGKIEIMDVNFRYISRPNVPIYK 1185
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV-----------------D 1040
LT ++ KT A+VG++GSGKST++ L+ RFYD ++ +V D
Sbjct: 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245
Query: 1041 ERN-------------------------------------IKSYNLRKLRSCIALVSQEP 1063
E I YNL+ LR+ ++VSQEP
Sbjct: 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP 1305
Query: 1064 TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123
LF +I +NI +GKE AT ++++A A EFI S + YDT G G LSGGQKQ
Sbjct: 1306 MLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365
Query: 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALE--KMMVGRTCVVVAHRLSTIQKA 1181
RIA+ARA+L+ P ILLLDEATS+LDS SE L+++ + K +T + +AHR+++I+++
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRS 1425
Query: 1182 DNIVVIKN----GKVVE-QGTQSSLLSMGNGGAYYSLIKM 1216
D IVV N G V+ GT LLS+ + G Y +K+
Sbjct: 1426 DKIVVFNNPDRTGSFVQAHGTHEELLSVQD-GVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 321 bits (826), Expect = e-102
Identities = 124/237 (52%), Positives = 170/237 (71%), Gaps = 16/237 (6%)
Query: 328 IEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
+EFK+V F YP P T+ LVG SGSGKST+++L+ RFYD G IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
+DGH ++ L LR Q+GLV+Q+ LF+ ++ ENI G+PGA+ E V +AA+AAN H+F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
IM+L +GY+T +G+ GV+LSGGQ+QRIAIARAL++DP IL+LDEATSALD ESER+VQ A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 496 LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
L++ + RT +IAHRLSTI AD I VL+ G+++E G+H+ L+ +GG Y+K+
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL----AQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 335 bits (860), Expect = e-102
Identities = 186/583 (31%), Positives = 306/583 (52%), Gaps = 24/583 (4%)
Query: 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYC--L 698
RL +L + A + A + + D + + L+ L
Sbjct: 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLA-----ALLKPLLDDGFGGRDRSVLWWVPL 58
Query: 699 IFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICAR 758
+ +GLA L I + + Y + + +V+ +R +M EK+ + +FD + + +R
Sbjct: 59 VVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSR 116
Query: 759 LANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSV 818
+ ++ V S D +L++ + + + L +W++ ++++ + P+ S
Sbjct: 117 ITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSK 176
Query: 819 LMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWF 878
++ +S++ + S + + +A E +R + F Q F ++ ++K +
Sbjct: 177 RLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA 236
Query: 879 SGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL---FQAFFLLMSTGKNIADAGSM 935
I +Q + + ++ + + A G ++ A L+ K++ + +
Sbjct: 237 GSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAP 296
Query: 936 TSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMI 995
+ +G +A ++FT+LD E D + IE +G +E +NV F YP R D+
Sbjct: 297 ---MQRGLAAAESLFTLLDSPPEKD----TGTRAIER-ARGDVEFRNVTFRYPGR-DRPA 347
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055
++L IE G+TVALVG+SGSGKST++ LI RFY+P SG +++D ++ Y L LR
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407
Query: 1056 IALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114
+ALVSQ+ LF TI NI YG+ E A AEI +A A A +F+ G DT GE G
Sbjct: 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174
V LSGGQ+QR+A+ARA+LK+ IL+LDEATSALD+ SE LVQ ALE++M GRT +V+AHR
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527
Query: 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
LSTI+KAD IVV+ +G++VE+GT + LL+ G Y L MQ
Sbjct: 528 LSTIEKADRIVVMDDGRIVERGTHNELLA--RNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 9e-99
Identities = 124/240 (51%), Positives = 166/240 (69%), Gaps = 4/240 (1%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +NV F+Y P + + K ++ I AGK VA+VG SGSGKSTI+ L+ RFYD SGS+
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D ++I+ L LR I +V Q+ LF TI NI YG+ AT+ E+ +AA A H+
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
I DGYDT GERG++LSGG+KQR+A+ARA+LKNP ILLLDEATSALD+ +E +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AL + GRT +V+AHRLSTI AD I+V+K+G++VE+GT LL+ GG Y + K Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA--KGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 315 bits (808), Expect = 1e-94
Identities = 172/518 (33%), Positives = 269/518 (51%), Gaps = 53/518 (10%)
Query: 67 MCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEK 126
+ + + IR+ + +L V FFD Q + + +++ IT D+ + A +
Sbjct: 76 YLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGT----LLSRITFDSEQVASAATDA 131
Query: 127 IPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEA 186
+ + IG +V SW+L L + ++ V I+ +V K L K+ +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYSWQLTLIVV---VMLPVLSILMRRVSKRLRRISKEIQNS 188
Query: 187 AG---GIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL------LLG 237
G +AE+ + R V F G+ +RF +N L +K + L+
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248
Query: 238 S--MGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQ-- 293
S + + FQ+ GS+ + F A I ++ ++ L +L+ ++
Sbjct: 249 SLALAVVLFIALFQAQAGSLTAGD--------FTAFITAMIA---LIRPLKSLTNVNAPM 297
Query: 294 --ATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR----------- 340
AA +F ++D P +D + + RG++EF++V F YP R
Sbjct: 298 QRGLAAAESLFTLLDSPP---EKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLV 354
Query: 341 -PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE 399
T+ LVG SGSGKST+++L+ RFY+P G ILLDGH + L LR Q+ LV+Q+
Sbjct: 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414
Query: 400 PILFSTSIKENILIGKPG-ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+LF+ +I NI G+ A + +A AA DF+ KL G +T +G+ GV LSGGQ
Sbjct: 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKA 518
+QR+AIARAL++D IL+LDEATSALD ESER+VQ AL++ QGRT ++IAHRLSTI KA
Sbjct: 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA 534
Query: 519 DLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
D I V+ GR++E G+H+ L+ N G Y+++ +Q
Sbjct: 535 DRIVVMDDGRIVERGTHNELLARN----GLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 5e-94
Identities = 111/227 (48%), Positives = 163/227 (71%), Gaps = 2/227 (0%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G IE +NV FSY + + K + I+ G+TVA+VG +G+GK+T+I L+ RFYDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANA 1095
+++D +I+ + + LRS I +V Q+ LF+GTI +NI G+ AT+ E+ +AA A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
H+FI +GYDT GE G LS G++Q +A+ARA+L++P IL+LDEATS +D+ +E L+
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1156 QEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
QEALEK+M GRT +++AHRLSTI+ AD I+V+ +GK++E+GT LL
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = 2e-91
Identities = 172/535 (32%), Positives = 266/535 (49%), Gaps = 26/535 (4%)
Query: 692 ETRLYCLIFLGLAFLTLIA-NLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDEN 750
T I L LA L L++ Y A +G+ L + + + + +F E
Sbjct: 191 STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF---EK 247
Query: 751 TSA-AICARLANEAHLVRSFIADRM-SLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPL 808
S I +R+ E +R F+ + +L+I + F+ + L IV+ A+ PL
Sbjct: 248 RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAI-PL 305
Query: 809 NIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGP 868
N+ L++ + K + +E E T+ A +++ R + +
Sbjct: 306 NVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365
Query: 869 KKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKN 928
K + I L S L W+ ++ +G ++ QL AF +L
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV-AFNMLAGYF-- 422
Query: 929 IADAGSMTSDIAKGSS------AIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKN 982
+T + A+ + ILD E ++ + +G IE +N
Sbjct: 423 ---ISPITRLSQLWTDFQQAKVALERLGDILDTPPE---QEGDKTLIHLPKLQGEIEFEN 476
Query: 983 VFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER 1042
V F Y D + + L+L+I G+ VA+VG+SGSGKST++ L+ Y PQ G +++D
Sbjct: 477 VSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535
Query: 1043 NIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISST 1102
++ +L LR + V Q+P LF+G+IR+NI G AT+ EI +AA LA AHEFI +
Sbjct: 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENL 595
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
GYDT GE G LSGGQ+QR+ALARA+L P ILLLDEATSALD +E ++ + L ++
Sbjct: 596 PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655
Query: 1163 MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+ GRT +++AHRLSTI+ AD I+V+ GK+VEQG+ LL+ GG Y L + Q
Sbjct: 656 LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA--QGGLYARLYQQQ 708
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 4e-91
Identities = 184/543 (33%), Positives = 286/543 (52%), Gaps = 55/543 (10%)
Query: 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICA 757
L+ +GL L I + I Y + + +V +R ++ + + +FD+ ++ + +
Sbjct: 69 LVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 758 RLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLV-----TWRVAIVMIAVQPLNIGC 812
R+ ++ V S LI V A + L + +W++++++I + P+
Sbjct: 127 RITYDSEQVAS---SSSGALITVVREG--ASIIGLFIMMFYYSWQLSLILIVIAPI---V 178
Query: 813 FYSRSVLMKSMSEKAKKSQSEGSQLASEAT---TNHRTITAFSSQDRILDLF-------- 861
+ V+ K +K Q+ Q+ + A H+ + F Q+ F
Sbjct: 179 SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238
Query: 862 RETMKGPKKESIKQSWFSGIGLFSSQF-LTTASI-----TLTFWYAGRIMNQGLVSPKQL 915
++ MK SI I + F L AS TLT AG I +
Sbjct: 239 QQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLT---AGTIT--------VV 287
Query: 916 FQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTK 975
F + LM K++ ++ + +G +A +T+F ILD + E D E K
Sbjct: 288 FSSMIALMRPLKSLT---NVNAQFQRGMAACQTLFAILDLEQEKDEGKRVI-----ERAK 339
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G IE +NV F+YP + + + + KI AGKTVALVG+SGSGKSTI L+ RFYD G
Sbjct: 340 GDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLAN 1094
+++D +++ Y L LR+ +ALVSQ LF TI NI Y E + +I +AA +A
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAY 458
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A +FI+ ++G DT GE GV LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+Q AL+++ RT +V+AHRLSTI+KAD I+V+++G++VE+GT + LL+ G Y L
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA--QNGVYAQLH 576
Query: 1215 KMQ 1217
KMQ
Sbjct: 577 KMQ 579
|
Length = 582 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 8e-91
Identities = 119/230 (51%), Positives = 165/230 (71%), Gaps = 15/230 (6%)
Query: 326 GEIEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKG 372
GEIEF++V+FSY P T+ +VG +G+GK+T+I+LL RFYDP KG
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
IL+DG I+ + K LRS +G+V Q+ LFS +I ENI +G+P A+ E V++AA+ A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFIMKL +GY+T +G+ G LS G++Q +AIARA++RDPKIL+LDEATS +D E+E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542
QEAL++ +GRT IIIAHRLSTI+ AD I VL G++IE G+HD L+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 1e-90
Identities = 118/240 (49%), Positives = 167/240 (69%), Gaps = 15/240 (6%)
Query: 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IEF++V F+Y P + +VG SGSGKST++ LL RFYD G+IL+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFI 436
DG I+++ L LR +G+V Q+ +LF+ +I NI G+P A+ E V++AA+AA +HD I
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
M+ DGY+T VG+ G++LSGG+KQR+AIARA++++P ILLLDEATSALD +ER +Q AL
Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180
Query: 497 DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
S+GRT I+IAHRLSTI AD I VL+ GR++E G+H+ L+ +GG Y++M + Q
Sbjct: 181 RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA----KGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 3e-86
Identities = 164/459 (35%), Positives = 245/459 (53%), Gaps = 60/459 (13%)
Query: 133 HLTSFIGSIL---VAFLLSWRLALAALPFSLLFIVPGIVFGKV-------LKDLGAQGKD 182
HL + + ++ +A ++WRL SL+ +V GIV+ + KD A ++
Sbjct: 137 HLATLVALVVLLPLALFMNWRL-------SLVLVVLGIVYTLITTLVMRKTKDGQAAVEE 189
Query: 183 AYEAAGGIAEQAISSIRTVYSFV---GEHQTLKRFSLALRK-NMEL----GIKQGLTKGL 234
Y AI ++ V S+ E Q L+ + L M + + L +
Sbjct: 190 HYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAA 249
Query: 235 LLGSMG--MTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNL-SFI 291
+M + GA Q V G +V G T+L + L + +FI
Sbjct: 250 STITMLAILVLGAALVQKGQLRV--------GEVVAFVGFATLL-----IGRLDQVVAFI 296
Query: 292 SQATTAATRI---FEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT----- 343
+Q AA ++ FE+ D VP + + L ++G +EF DV FSY
Sbjct: 297 NQVFMAAPKLEEFFEVEDAVPDVR-DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVS 355
Query: 344 ------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397
T+ +VG +G+GKST+I+LL+R +DP G IL+DG I+ + LR + +V
Sbjct: 356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415
Query: 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
Q+ LF+ SI++NI +G+P A+ E + AA+ A HDFI + DGY+T VG+ G QLSGG
Sbjct: 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK 517
++QR+AIARAL++DP IL+LDEATSALD E+E V+ ALD+ +GRT IIAHRLST+R
Sbjct: 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN 535
Query: 518 ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
AD I V +GRV+ESGS D L+ GG ++ +++ Q
Sbjct: 536 ADRILVFDNGRVVESGSFDELVA----RGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 1e-84
Identities = 118/219 (53%), Positives = 158/219 (72%), Gaps = 13/219 (5%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTI-------------GLVGSSGSGKSTVISLLERFYDPV 370
L+G ++F++V F+YPTRPDT + LVG SGSGKSTV++LLE FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAA 430
G +LLDG I + + K+L S++ LV QEP+LF+ S+++NI G S E V +AAQ A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+ H FI +L GY+T+VG+ G QLSGGQKQR+AIARALIR+P++L+LDEATSALDAESE+
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 491 IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRV 529
VQ+AL + RT+++IAHRLST+ +AD I VL GR+
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 2e-84
Identities = 119/269 (44%), Positives = 177/269 (65%), Gaps = 9/269 (3%)
Query: 950 FTILDRKSEI-DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008
F + D ++ DP + KG +E +V FSY + Q + ++ + + G+T
Sbjct: 310 FEVEDAVPDVRDPPGAIDLGRV----KGAVEFDDVSFSYDNSR-QGVE-DVSFEAKPGQT 363
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068
VA+VG +G+GKST+I L++R +DPQSG +++D +I++ LR IA+V Q+ LF
Sbjct: 364 VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR 423
Query: 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128
+I NI G+ AT+ E+R AA A AH+FI DGYDT GERG QLSGG++QR+A+A
Sbjct: 424 SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIK 1188
RA+LK+P IL+LDEATSALD +E V+ AL+++M GRT ++AHRLST++ AD I+V
Sbjct: 484 RALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543
Query: 1189 NGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
NG+VVE G+ L++ GG + +L++ Q
Sbjct: 544 NGRVVESGSFDELVA--RGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 3e-83
Identities = 125/278 (44%), Positives = 171/278 (61%), Gaps = 22/278 (7%)
Query: 293 QATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------- 344
Q A R+ ++++ P + L LRG I F+++ F Y PD+P
Sbjct: 423 QTGIALERLGDILNS-PTEPRSAGLA-ALPELRGAITFENIRFRY--APDSPEVLSNLNL 478
Query: 345 ------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ 398
IG+VG SGSGKST+ LL+R Y P G +L+DG + WLR QMG+V Q
Sbjct: 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538
Query: 399 EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
E +LFS SI++NI + PGA E V+ AA+ A HDFI +L GY T+VG+ G LSGGQ
Sbjct: 539 ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKA 518
+QRIAIARAL+ +P+IL+ DEATSALD ESE ++ + + +GRT+IIIAHRLST+R
Sbjct: 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC 658
Query: 519 DLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
D I VL+ G++ ESG H+ L+ G Y+++ Q Q
Sbjct: 659 DRIIVLEKGQIAESGRHEELLA----LQGLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 2e-81
Identities = 121/243 (49%), Positives = 161/243 (66%), Gaps = 20/243 (8%)
Query: 328 IEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDPVKGN 373
I F+ V F Y +PD P +G+VG SGSGKST+ L++RFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVH 433
+L+DGH + WLR Q+G+V QE +LF+ SI++NI + PG SME V++AA+ A H
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493
DFI +L +GY+T VG+ G LSGGQ+QRIAIARALI +P+IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 494 EALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553
+ GRT+IIIAHRLST++ AD I V++ GR++E GSHD L+ E G Y+ +
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA----ENGLYAYLY 234
Query: 554 QLQ 556
QLQ
Sbjct: 235 QLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 263 bits (674), Expect = 1e-80
Identities = 107/218 (49%), Positives = 156/218 (71%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
KG ++ +NV F+YP+RPD ++ + ++ + G+ ALVG SGSGKST++ L+E FY PQ
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094
G V++D + I Y + L S ++LV QEP LFA +++ NI YG + + +++AA A+
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
AH FIS GYDT GE+G QLSGGQKQR+A+ARA+++NP +L+LDEATSALD+ SE
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
VQ+AL RT +V+AHRLST+++AD I+V+ G++
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 2e-79
Identities = 174/498 (34%), Positives = 270/498 (54%), Gaps = 65/498 (13%)
Query: 93 VGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLA 152
V FFD Q ST +++ IT D+ + + + + + S IG ++ F SW+L+
Sbjct: 113 VSFFDKQ----STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168
Query: 153 LAALPFSLLFIVPGIVFG------KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVG 206
L +L ++ IV K +++ ++ AEQ + + V F G
Sbjct: 169 L------ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGG 222
Query: 207 EHQTLKRF---SLALR-KNMELGIKQGLTKGL--LLGSMGMTYGAWAFQSWVGSV-LVTE 259
+ KRF S +R + M++ ++ + L+ S+ A AF + S V +
Sbjct: 223 QEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASL-----ALAFVLYAASFPSVMD 277
Query: 260 RGEKGGL--VFVAGICTILGGVGIMSALPNLSFIS---QATTAATR-IFEMIDRVPVINS 313
G + VF + I +M L +L+ ++ Q AA + +F ++D +
Sbjct: 278 TLTAGTITVVFSSMI-------ALMRPLKSLTNVNAQFQRGMAACQTLFAILD----LEQ 326
Query: 314 EDEIGK-TLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKSTV 359
E + GK + +G+IEF++V F+YP + + P T+ LVG SGSGKST+
Sbjct: 327 EKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTI 385
Query: 360 ISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA- 418
+LL RFYD +G ILLDGH ++ L LR+Q+ LV+Q LF+ +I NI +
Sbjct: 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQY 445
Query: 419 SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478
S E + +AA+ A DFI K+++G +T +G+ GV LSGGQ+QRIAIARAL+RD IL+LD
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505
Query: 479 EATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538
EATSALD ESER +Q ALD+ + RT ++IAHRLSTI KAD I V++ G ++E G+H L
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
Query: 539 MQMNNGEGGAYSKMVQLQ 556
+ N G Y+++ ++Q
Sbjct: 566 LAQN----GVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 2e-78
Identities = 129/282 (45%), Positives = 182/282 (64%), Gaps = 8/282 (2%)
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSY-PSRP 991
G +I + + + +F +LD ++E+ + P A + G + NV F+Y P RP
Sbjct: 220 GFSYREIRQALTDMEKMFDLLDVEAEVS-DAPDA-PPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051
I G++ I GKTVA+VG+SG+GKSTI+ L+ RFYD SGS+ +D ++I+ +
Sbjct: 278 ---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334
Query: 1052 LRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
LR I +V Q+ LF TI NI YG+ AT E+ AA A H+FI S +GYDT G
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVV 1171
ERG++LSGG+KQR+A+AR +LKNP IL+LDEATSALD+ +E +Q AL ++ GRT +V+
Sbjct: 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI 454
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213
AHRLSTI AD I+V+ NG++VE+GT LL+ GG Y +
Sbjct: 455 AHRLSTIIDADEIIVLDNGRIVERGTHEELLAA--GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 3e-78
Identities = 95/214 (44%), Positives = 131/214 (61%), Gaps = 43/214 (20%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE KNV FSYP RP + K ++L I+ G+ VA+VG SGSGKST++ L+ R YDP SG +
Sbjct: 1 IEFKNVSFSYPGRPKP-VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D +++ +L LR IA V Q+P LF+GTIR+NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
LSGGQ+QRIA+ARA+L++P IL+LDEATSALD +E L+ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGK 1191
AL + G+T +V+AHRLSTI+ AD I+V+ +G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 239 bits (614), Expect = 4e-73
Identities = 97/213 (45%), Positives = 121/213 (56%), Gaps = 54/213 (25%)
Query: 328 IEFKDVDFSYPTRPDTP------------TIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
IEFK+V FSYP RP + +VG SGSGKST++ LL R YDP G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
+DG ++ L L+ LR + V Q+P LFS +I+ENIL
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL----------------------- 97
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
SGGQ+QRIAIARAL+RDP IL+LDEATSALD E+E ++ EA
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 496 LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGR 528
L ++G+T+I+IAHRLSTIR AD I VL GR
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 1e-72
Identities = 157/538 (29%), Positives = 266/538 (49%), Gaps = 41/538 (7%)
Query: 698 LIFLGLAFLTL-----IANLIQHYNFAIMGEHLVQRVREKMLEKIF----TFEIGWFDQD 748
L L LA L + ++ Y FA HL R+ ++ +++ +G+F+
Sbjct: 178 LSVLALAMLAVAIFEPALGGLRTYLFA----HLTSRIDVELGARLYRHLLGLPLGYFESR 233
Query: 749 ENTSAAICARLANEAHLVRSFIADR-MSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQP 807
AR+ E +R+F+ +++++ + F + L V + + + V
Sbjct: 234 R--VGDTVARV-RELEQIRNFLTGSALTVVLDLLFV-----VVFLAVMFFYSPTLTGVVI 285
Query: 808 LNIGCFYSRSV-----LMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFR 862
++ C+ SV L K + +K ++S + + E+ T TI A +++ + + +
Sbjct: 286 GSLVCYALLSVFVGPILRKRVEDKFERS-AAATSFLVESVTGIETIKATATEPQFQNRWD 344
Query: 863 ETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLL 922
+ S + + I + + + + + W+ ++ G +SP QL AF +L
Sbjct: 345 RQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLV-AFNML 403
Query: 923 MS--TGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIEL 980
T + A + D + A+ + IL+ +E A ++ +G I
Sbjct: 404 AGRVTQPVLRLA-QLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPEL----RGAITF 458
Query: 981 KNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
+N+ F Y PD + L L I+ G+ + +VG SGSGKST+ L++R Y PQ G V+V
Sbjct: 459 ENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516
Query: 1040 DERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFI 1099
D ++ + LR + +V QE LF+ +IR NI A + AA LA AH+FI
Sbjct: 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFI 576
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
S GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE L+ +
Sbjct: 577 SELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636
Query: 1160 EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
++ GRT +++AHRLST++ D I+V++ G++ E G LL++ G Y L + Q
Sbjct: 637 REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL--QGLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 8e-72
Identities = 107/241 (44%), Positives = 158/241 (65%), Gaps = 5/241 (2%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I ++V F Y +PD +I ++L+I+ G+ V +VG+SGSGKST+ LI+RFY P++G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V+VD ++ + LR + +V QE LF +IR NI + + +AA LA AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+FIS +GYDT GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+ +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216
+ + GRT +++AHRLST++ AD I+V++ G++VEQG+ LL+ G Y L ++
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA--ENGLYAYLYQL 236
Query: 1217 Q 1217
Q
Sbjct: 237 Q 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 9e-71
Identities = 148/435 (34%), Positives = 229/435 (52%), Gaps = 36/435 (8%)
Query: 140 SILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIR 199
++++ + W AL L +L+++ ++ D +A A A ++ +
Sbjct: 74 AVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFE 133
Query: 200 TVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTE 259
TV F E R+ AL + IK ++ +L Q+ + S +
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLN----------FGQTAIFSTGLRV 183
Query: 260 RGEKGGLVFVAGICTILGGVGIMSALPNLS----FISQAT----TAATRIFEMID--RVP 309
L G T+ V + + L LS F+ + A T + +M D V
Sbjct: 184 MMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243
Query: 310 VINSEDEIGKTLAYLR-GEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKS 357
S+ L +R G + F +V F+Y R P T+ +VG SG+GKS
Sbjct: 244 AEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKS 303
Query: 358 TVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG 417
T++ LL RFYD G+I +DG I+ + + LR +G+V Q+ +LF+ +I NI G+P
Sbjct: 304 TILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD 363
Query: 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477
A+ E V AA+AA +HDFI L +GY+T VG+ G++LSGG+KQR+AIAR ++++P IL+L
Sbjct: 364 ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL 423
Query: 478 DEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537
DEATSALD +E+ +Q AL + S GRT ++IAHRLSTI AD I VL +GR++E G+H+
Sbjct: 424 DEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEE 483
Query: 538 LMQMNNGEGGAYSKM 552
L+ GG Y++M
Sbjct: 484 LLAA----GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 3e-69
Identities = 129/342 (37%), Positives = 183/342 (53%), Gaps = 24/342 (7%)
Query: 888 FLTTASITLTFWYAG-RIMNQGLVSPKQLFQAFFLLMSTGKNIA--------DAGSMTSD 938
F SI L Y G R++ +G ++ LF F+L+ +A D GS
Sbjct: 232 FFAYLSIALVAVYIGFRLLGEGDLT---LFAGLFVLI-----LAPEFFQPLRDLGSFFHA 283
Query: 939 IAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKG 998
A G +A +FT+L+ KA E P + I L+N+ F YP
Sbjct: 284 AAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE--ISLENLSFRYPDGK--PALSD 339
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
L L I+AG+ ALVG SG+GKST++ L+ F P G + V+ +++ + R I+
Sbjct: 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399
Query: 1059 VSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118
VSQ P LFAGTIR+NI+ + A++ EI A A EF+ DG DT GE G LS
Sbjct: 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLS 458
Query: 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178
GGQ QR+ALARA+L +LLLDE T+ LD+ +E ++ +AL+++ +T +V+ HRL
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA 518
Query: 1179 QKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220
AD IVV+ NG++VEQGT L G Y +L+K Q R
Sbjct: 519 ADADRIVVLDNGRLVEQGTHEELSE--KQGLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 6e-69
Identities = 138/526 (26%), Positives = 239/526 (45%), Gaps = 79/526 (15%)
Query: 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129
+ A ++R +L +LR V FF + + + + + + + + ++ ++
Sbjct: 223 IKLAVGMSAR----FLWHILRLPVRFFAQRHAG----DIASRVQLNDQ-VAEFLSGQLAT 273
Query: 130 CLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGG 189
+ L+ L L L + F+ + ++ + + D + + G
Sbjct: 274 TALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTG 333
Query: 190 IAEQAISSIRTVYSFVGEHQTLKRFS----LALRKNMELGIK-----------QGLTKGL 234
+A + SI T+ + E R++ L ELG+ L L
Sbjct: 334 VAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSAL 393
Query: 235 LLGSMG-------MTYGAW-AFQSWVGSVLVTERGEKGGLV-FVAGICTILGGVG----I 281
+L G +T G AFQS + S L LV F + + G + +
Sbjct: 394 ILVVGGLRVMEGQLTIGMLVAFQSLMSSFL----EPVNNLVGFGGTLQELEGDLNRLDDV 449
Query: 282 MSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRP 341
+ + + AA + + L G +E +++ F Y +
Sbjct: 450 LRNPVDPLLEEEEAPAAG--------------SEPSPR----LSGYVELRNITFGY-SPL 490
Query: 342 DTPTI-------------GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW 388
+ P I LVG SGSGKST+ L+ Y P G IL DG +++ +
Sbjct: 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV 550
Query: 389 LRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
L + + +V+Q+ LF ++++N+ + P +V+A + A +HD I GY+ ++
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
+ G LSGGQ+QR+ IARAL+R+P IL+LDEATSALD E+E+I+ + L + +G T II+
Sbjct: 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIV 668
Query: 509 AHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554
AHRLSTIR D I VL+ G+V++ G+H+ L GGAY+++++
Sbjct: 669 AHRLSTIRDCDEIIVLERGKVVQRGTHEELWA----VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 3e-68
Identities = 95/221 (42%), Positives = 141/221 (63%), Gaps = 1/221 (0%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G IE +NV FSYP++ ++L I AG+ VA++G+ GSGKST++ L+ Y P SG
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANA 1095
SV++D +I+ + LR I V Q+ TLF GT+R NI G +A + I +AA LA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
+F++ +G D GERG LSGGQ+Q +ALARA+L +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1156 QEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196
+E L +++ +T +++ HR S + D I+V+ +G++V G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 5e-66
Identities = 148/445 (33%), Positives = 232/445 (52%), Gaps = 56/445 (12%)
Query: 133 HLTSFIGSIL---VAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGG 189
HL +F+ L AF + WRL++ + +L+I+ + + K+ A + Y
Sbjct: 137 HLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFK 196
Query: 190 IAEQAISSIRTVYSF---VGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAW 246
+IS++ V+S+ E LK+F+ LL + W
Sbjct: 197 HVSDSISNVSVVHSYNRIEAETSALKQFT-----------------NNLLSAQYPVLDWW 239
Query: 247 AFQS---------------WVGSVLVTERGEKGG---LVFVAGICTILGGVGIMSALPNL 288
A S +G+VLV +GE + F+ ++G + MS
Sbjct: 240 ALASGLNRMASTISMMCILVIGTVLV-IKGELSVGEVIAFIGFANLLIGRLDQMSGFITQ 298
Query: 289 SFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYP---------- 338
F ++A F++ D V + + L ++G +EF+ + F +
Sbjct: 299 IFEARAKL--EDFFDLEDSVFQREEPADAPE-LPNVKGAVEFRHITFEFANSSQGVFDVS 355
Query: 339 -TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397
T+ +VG +G+GK+T+I+LL+R YDP G IL+DG I + + LR + V
Sbjct: 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415
Query: 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
Q+ LF+ SI+ENI +G+ GA+ E V +AA+AA HDFI+K ++GY+T VG+ G +LSGG
Sbjct: 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK 517
++QR+AIARA++++ IL+LDEATSALD E+E V+ A+D + RT IIAHRLST+R
Sbjct: 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN 535
Query: 518 ADLIGVLQSGRVIESGSHDVLMQMN 542
ADL+ L GR+IE GS L+Q +
Sbjct: 536 ADLVLFLDQGRLIEKGSFQELIQKD 560
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 1e-65
Identities = 151/564 (26%), Positives = 243/564 (43%), Gaps = 69/564 (12%)
Query: 653 TLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANL 712
LL LG G+ I A+ L VV + +E + L +
Sbjct: 6 ALLALLGVLGALLIIA-QAWLLARVVDGLIS--AGEPLAELLPALGALALVLLLRALLGW 62
Query: 713 IQHYNFAIMGEHLVQRVREKMLEKIFTFEIGW--FDQDENTSAAICARL-ANEAHLVRSF 769
+Q A + ++RE++LE + W + + A + + R
Sbjct: 63 LQERAAARAAAAVKSQLRERLLEAVAALGPRWLQGRPSGELATLALEGVEALDGYFARYL 122
Query: 770 IADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSE-KAK 828
+++++ + A++ W ++++ PL I F +L+ ++ A+
Sbjct: 123 PQLVLAVIVPLAILAAV-----FPQDWISGLILLLTAPL-IPIFM---ILIGWAAQAAAR 173
Query: 829 KSQSEGSQLASEATTNH--------RTITAFSSQD-------RILDLFRE-TMKGPKKES 872
K + S+L+ H T+ F R + +RE TM
Sbjct: 174 KQWAALSRLS-----GHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTM-----RV 223
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAG-RIMNQGLVSPKQLFQAFFLLMSTGKNIA- 930
++ ++ S L + T S+ L Y G R++ L L F+L+ +A
Sbjct: 224 LRIAFLSSAVL---ELFATLSVALVAVYIGFRLLAGDL----DLATGLFVLL-----LAP 271
Query: 931 -------DAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNV 983
G+ A G +A +F +LD + +E V
Sbjct: 272 EFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPLAG----KAPVTAAPAPSLEFSGV 327
Query: 984 FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043
+YP R + + ++ + G+ VALVG SG+GKST++ L+ F DP GS+ V+
Sbjct: 328 SVAYPGRRPAL--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP 385
Query: 1044 IKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTE 1103
+ + R IA V Q P LFAGTI +NI + A++AEIR+A A EF+++
Sbjct: 386 LADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALP 445
Query: 1104 DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163
G DT GE G LSGGQ QR+ALARA L++ +LLLDE T+ LD+ +E V EAL +
Sbjct: 446 QGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA 505
Query: 1164 VGRTCVVVAHRLSTIQKADNIVVI 1187
GRT ++V HRL+ AD IVV+
Sbjct: 506 QGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 1e-65
Identities = 147/447 (32%), Positives = 232/447 (51%), Gaps = 66/447 (14%)
Query: 147 LSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGI-------AEQAISSIR 199
+SW+L L AL +P V ++K G Q + ++ A +++++SIR
Sbjct: 135 ISWQLTLLAL-------LPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIR 187
Query: 200 TVYSFVGEHQTLKRFSL----ALRKNMELG-----------IKQGLTKGLLLGSMGMTYG 244
+ +F E + F+ +KNM + I G+ L +G G
Sbjct: 188 MIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG-----G 242
Query: 245 AWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAA-TRIFE 303
+W GS+ + G+ V G+ + M AL + I + +AA +RI
Sbjct: 243 SWMV--VNGSLTL---GQLTSFVMYLGLM-----IWPMLALAWMFNIVERGSAAYSRIRA 292
Query: 304 MIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVG 350
M+ PV+ E + RGE++ F+YP D P +G+ G
Sbjct: 293 MLAEAPVVKDGSE---PVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICG 348
Query: 351 SSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410
+GSGKST++SL++R +D +G+I + KLQL RS++ +V+Q P LFS ++ N
Sbjct: 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408
Query: 411 ILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470
I +G+P A+ + + A+ A+VHD I++L GY+T+VG+ GV LSGGQKQRI+IARAL+
Sbjct: 409 IALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468
Query: 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVI 530
+ +IL+LD+A SA+D +E + L Q +GRT+II AHRLS + +A I V+Q G +
Sbjct: 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIA 528
Query: 531 ESGSHDVLMQMNNGEGGAYSKMVQLQQ 557
+ G+HD L Q + G Y M + QQ
Sbjct: 529 QRGNHDQLAQ----QSGWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 3e-65
Identities = 130/391 (33%), Positives = 213/391 (54%), Gaps = 11/391 (2%)
Query: 818 VLMKSMSEKAKKSQSEGSQ---LASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874
+L + +S A++S E +Q + E+ + TI A +++ R + +T+ + +K
Sbjct: 304 LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363
Query: 875 QSWFSGIGLFSSQFLT-TASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAG 933
+ S + +QF+ S+ + I + G ++ L L +G+ +A G
Sbjct: 364 SRFLSNLATNFAQFIQQLVSVAIVVVGVYLISD-GELTMGGLIACVML---SGRALAPLG 419
Query: 934 SMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPT-KGFIELKNVFFSYPSRPD 992
+ + + A +T LD ++ E P+ + + P +G IE +NV F+YP +
Sbjct: 420 QLAGLLTRYQQA-KTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET 478
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
+ ++L I G+ VA++G+ GSGKST++ L+ Y P GSV++D +I+ + L
Sbjct: 479 PAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
R I V Q+P LF GT+R NI G A + EI +AA LA EF+ DG D GE
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RG LSGGQ+Q +ALARA+L++P ILLLDE TSA+D+ SE ++ L++ + G+T V+V
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT 657
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
HR S + D I+V+ NG++V G + +L
Sbjct: 658 HRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 218 bits (559), Expect = 6e-65
Identities = 85/224 (37%), Positives = 137/224 (61%), Gaps = 6/224 (2%)
Query: 976 GFIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
G IE KNV Y RP+ + K ++ I+ G+ V +VG++GSGKS+++ + R + S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI-VYGKEVATEAEIRKAAVLA 1093
GS+++D +I L LRS I+++ Q+P LF+GTIR N+ +G+ ++ E+ +A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
EF+ S G DT E G LS GQ+Q + LARA+L+ IL+LDEAT+++D ++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 1154 LVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
L+Q+ + + T + +AHRL TI +D I+V+ G+VVE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 4e-64
Identities = 132/434 (30%), Positives = 223/434 (51%), Gaps = 44/434 (10%)
Query: 141 ILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAG---GIAEQAISS 197
+LV ++ L L L ++PG++ + L L + + + +++S
Sbjct: 277 LLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEES---MRESAQRNAVLVESLSG 333
Query: 198 IRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAWAFQSW------ 251
+ T+ + E + +R+ + G+K ++ L S T A Q
Sbjct: 334 LETIKALNAEGRFQRRWEQTVAALARSGLK---SRFL---SNLATNFAQFIQQLVSVAIV 387
Query: 252 -VGSVLVTERGE--KGGLVFVAGICTILGGVGI--MSALPNL-SFISQATTAATRIFEMI 305
VG L+++ GE GGL+ C +L G + + L L + QA TA + E++
Sbjct: 388 VVGVYLISD-GELTMGGLI----ACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELM 442
Query: 306 DRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT-------------IGLVGSS 352
PV E L+GEIEF++V F+YP + +TP + ++G
Sbjct: 443 QL-PVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRI 500
Query: 353 GSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENIL 412
GSGKST++ LL Y P +G++LLDG I+++ LR +G V Q+P LF ++++NI
Sbjct: 501 GSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560
Query: 413 IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472
+G P A E +++AA+ A V +F+ + DG + ++G+ G LSGGQ+Q +A+ARAL+RDP
Sbjct: 561 LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620
Query: 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIES 532
ILLLDE TSA+D SE ++ L + G+T++++ HR S + D I V+ +GR++
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680
Query: 533 GSHDVLMQMNNGEG 546
G D +++
Sbjct: 681 GPKDQVLEALRKGR 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-63
Identities = 106/267 (39%), Positives = 159/267 (59%), Gaps = 8/267 (2%)
Query: 952 ILDRKSEIDPEDPKASEDIEEPT---KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008
+L + E+ +A EP+ G++EL+N+ F Y S + + + +L ++ G+
Sbjct: 449 VLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQR 507
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068
VALVG SGSGKSTI L+ Y P SG ++ D + L + +A+V Q+ LF G
Sbjct: 508 VALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG 567
Query: 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128
T+R N+ +A++ +A A H+ I+S GYD E G LSGGQ+QR+ +A
Sbjct: 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIK 1188
RA+++NP IL+LDEATSALD +E ++ + L + G TC++VAHRLSTI+ D I+V++
Sbjct: 628 RALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLE 685
Query: 1189 NGKVVEQGTQSSLLSMGNGGAYYSLIK 1215
GKVV++GT L GGAY LI+
Sbjct: 686 RGKVVQRGTHEEL--WAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 2e-63
Identities = 100/274 (36%), Positives = 164/274 (59%), Gaps = 13/274 (4%)
Query: 943 SSAIRTIFTILDRKSEID-PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTL 1001
+SA R I I ++K E+ P A + + L NV F+YP +P Q + KGL+L
Sbjct: 309 ASARR-INEITEQKPEVTFPTTSTA-----AADQVSLTLNNVSFTYPDQP-QPVLKGLSL 361
Query: 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061
+I+AG+ VAL+G++G GKST++ L+ R +DPQ G ++++ + I Y+ LR I++VSQ
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 1062 EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH-EFISSTEDGYDTYCGERGVQLSGG 1120
LF+ T+R N++ A++ + VL E + + G + + GE G QLSGG
Sbjct: 422 RVHLFSATLRDNLLLAAPNASDEAL--IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGG 479
Query: 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK 1180
+++R+ +ARA+L + +LLLDE T LD+ +E + E L + +T +++ HRL+ +++
Sbjct: 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ 539
Query: 1181 ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
D I V+ NG+++EQGT LL+ G YY L
Sbjct: 540 FDRICVMDNGQIIEQGTHQELLA--QQGRYYQLK 571
|
Length = 574 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 9e-63
Identities = 96/276 (34%), Positives = 160/276 (57%), Gaps = 16/276 (5%)
Query: 293 QATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT------- 345
AA ++F +++ E + EI +++ F YP +
Sbjct: 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIK 345
Query: 346 ----IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
LVG+SG+GKST+++LL F P +G I ++G ++ L + R Q+ V+Q P
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
LF+ +I+ENIL+ +P AS E ++ A A + +F+ K DG +T +G+ G LSGGQ QR
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQR 464
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521
+A+ARAL+ +LLLDE T+ LDAE+E+I+ +AL + ++ +T+++I HRL AD I
Sbjct: 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRI 524
Query: 522 GVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557
VL +GR++E G+H+ L + + G Y+ +++ Q+
Sbjct: 525 VVLDNGRLVEQGTHEELSE----KQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 6e-62
Identities = 93/221 (42%), Positives = 135/221 (61%), Gaps = 14/221 (6%)
Query: 326 GEIEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKG 372
G IEF++V FSYP + P + ++G GSGKST++ LL Y P G
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
++LLDG I++L LR +G V Q+ LF ++++NI +G P A E +++AA+ A V
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
DF+ K +G + ++G+ G LSGGQ+Q +A+ARAL+ DP ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
+E L Q +T+III HR S + D I V+ SGR++ G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 6e-62
Identities = 234/932 (25%), Positives = 412/932 (44%), Gaps = 132/932 (14%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP 400
P+ + +VG G GKS+++S L D V+G++ + G + V Q+
Sbjct: 662 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQA 708
Query: 401 ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ + S++ENIL GK + V++A A + D + L G T++G+ GV LSGGQ
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEAC--ALLPDLEI-LPSGDRTEIGEKGVNLSGGQ 765
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL---DQASQGRTMIIIAHRLSTI 515
KQR+++ARA+ + I L D+ SA+DA + + E + + + +T I++ H +S +
Sbjct: 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL 825
Query: 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSK 575
+ D+I V+ G++ E GS+ L+Q + GA+++ ++ +Y P + +
Sbjct: 826 PQVDVIIVMSGGKISEMGSYQELLQRD----GAFAEFLR-------------TYAPDEQQ 868
Query: 576 SHHSLMSAQTPHTPINEGSSYQNSPIY-PLSPTFSISMTGSFQMHSVENQNDKNFHDNSH 634
H + T + G + I + T + Q + +D H
Sbjct: 869 GH-----LEDSWTALVSGEGKEAKLIENGMLVTDVVGK--QLQRQLSASSSDSGDQSRHH 921
Query: 635 SPSSLLRLLRMSAIEWKRTLLGCLGSAGSG----AIYPSYAYCLG--------------- 675
S+ L+ WK L A +G ++Y Y +G
Sbjct: 922 GSSAELQKAEAKEETWK---LMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNH 978
Query: 676 --SVVSAYFIK---DDSKLKS---ETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQ 727
++ S Y++ DD + T L ++ L L A +I G +
Sbjct: 979 VSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASR 1038
Query: 728 RVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLA 787
+ + +L + +F++ S + R + E V S I + + + F+ A
Sbjct: 1039 VLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA 1096
Query: 788 YTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKK----SQSEGSQLASEATT 843
+ LL T I + + PL + F+ + + S S + K+ S+S +E
Sbjct: 1097 LIVILLAT---PIAAVIIPPLGLLYFFVQRFYVAS-SRQLKRLESVSRSPVYSHFNETLL 1152
Query: 844 NHRTITAFSSQDRIL---DL-FRETMKGPKKESIKQSWFS--------GIGLFSSQFLTT 891
I AF Q+R + DL E K + W + I LF++ F
Sbjct: 1153 GVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVI 1212
Query: 892 ASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFT 951
+ +L + GLV L ++ L ++ N + + SS + T
Sbjct: 1213 SRHSL---------SAGLVG---LSVSYSLQVTFYLNW---------LVRMSSEMETNIV 1251
Query: 952 ILDRKSEIDPEDPKASEDIEE-------PTKGFIELKNVFFSYPSRPD-QMIFKGLTLKI 1003
++R E + +A I+E P +G +E +N Y R D ++ + + + I
Sbjct: 1252 AVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVLRHINVTI 1309
Query: 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP 1063
G+ V +VG++G+GKS++ + R + G +++D NI L LR I ++ Q+P
Sbjct: 1310 HGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP 1369
Query: 1064 TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123
LF+G++R N+ + + E E+ A LA+ F+S+ D D C E G LS GQ+Q
Sbjct: 1370 VLFSGSLRMNLDPFSQYSDE-EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428
Query: 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADN 1183
+ LARA+L+ IL+LDEAT+A+D ++NL+Q + T + +AHRL+TI
Sbjct: 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488
Query: 1184 IVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215
++V+ G+V E G S+LL G +YS+ K
Sbjct: 1489 VIVLDKGEVAEFGAPSNLLQ--QRGIFYSMAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 1e-61
Identities = 96/270 (35%), Positives = 160/270 (59%), Gaps = 6/270 (2%)
Query: 947 RTIFTILDRKSEIDPEDPKASEDIEE--PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIE 1004
+ I + R ++I + P+ + E+ T +EL+NV F+YP + + K L +
Sbjct: 305 QVIASAR-RLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTK-ALKNFNLTLA 362
Query: 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT 1064
G+ VA++G+SGSGKST++ L+ +DPQ GS+ ++ I S + + LR I++++Q
Sbjct: 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVH 422
Query: 1065 LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124
LF+GT+R N+ A++ E+ A + + S DG +T+ GE G +LSGG+++R
Sbjct: 423 LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482
Query: 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNI 1184
+ALARA+L + + LLDE T LD +E V L + G+T ++V HRL +++ D I
Sbjct: 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542
Query: 1185 VVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+V+ NGK++E+GT + LL+ N G Y L
Sbjct: 543 IVLDNGKIIEEGTHAELLA--NNGRYKRLY 570
|
Length = 573 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 1e-60
Identities = 105/258 (40%), Positives = 167/258 (64%), Gaps = 12/258 (4%)
Query: 966 ASEDIEEP--------TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGS 1017
+ EEP KG +E +++ F + + Q +F ++ + +AG+TVA+VG +G+
Sbjct: 315 SVFQREEPADAPELPNVKGAVEFRHITFEFANS-SQGVFD-VSFEAKAGQTVAIVGPTGA 372
Query: 1018 GKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG 1077
GK+T+I L++R YDP G +++D +I + LR IA V Q+ LF +IR+NI G
Sbjct: 373 GKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG 432
Query: 1078 KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137
+E AT+ E+ +AA A AH+FI +GYDT GERG +LSGG++QR+A+ARA+LKN I
Sbjct: 433 REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492
Query: 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
L+LDEATSALD +E V+ A++ + RT ++AHRLST++ AD ++ + G+++E+G+
Sbjct: 493 LVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGS 552
Query: 1198 QSSLLSMGNGGAYYSLIK 1215
L+ G +Y L++
Sbjct: 553 FQELIQ--KDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-59
Identities = 123/437 (28%), Positives = 199/437 (45%), Gaps = 31/437 (7%)
Query: 134 LTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKD-AYEAAGGIAE 192
SF SI +A LL L L L LF G FG L A + + G AE
Sbjct: 152 GLSFF-SIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAE 210
Query: 193 QAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAWAFQSWV 252
I Y L+ ++ KQ GL + + G +
Sbjct: 211 LLIFGAEDAY-----RTALEA---TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLL 262
Query: 253 GSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSF--ISQATTAATRIFEMIDRVPV 310
G + I + L +F + Q +A R+ +++D+ P
Sbjct: 263 WMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPE 322
Query: 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP------------TIGLVGSSGSGKST 358
+ DE T +E ++V F+YP + + ++G SGSGKST
Sbjct: 323 VTFPDEQTATTGQA---LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379
Query: 359 VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA 418
++ LL +DP +G+I L+G +I L + LR + ++ Q LFS ++++N+ + P A
Sbjct: 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439
Query: 419 SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478
S E + A Q + + DG T +G+ G +LSGG+++R+A+ARAL+ D + LLD
Sbjct: 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD 499
Query: 479 EATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538
E T LD +ER V L + ++G+T++++ HRL + + D I VL +G++IE G+H L
Sbjct: 500 EPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559
Query: 539 MQMNNGEGGAYSKMVQL 555
+ N G Y ++ QL
Sbjct: 560 LANN----GRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 208 bits (533), Expect = 3e-57
Identities = 75/215 (34%), Positives = 127/215 (59%), Gaps = 3/215 (1%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
L + AG+ +ALVG SG+GK++++ + F P GS+ ++ ++ + R ++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1059 VSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118
V Q P L GT+R N++ G A++ ++++A A EF+ G DT G++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178
GQ QR+ALARA+L+ +LLLDE T++LD+ SE LV +AL +T ++V H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 1179 QKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213
+ D I V+++G++V+QG + L GG + +L
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAEL--SQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 6e-57
Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 19/224 (8%)
Query: 326 GEIEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKSTVISLLERFYDPVK 371
G+IEFK+V Y RP+ P +G+VG +GSGKS+++ L R +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENI-LIGKPGASMETVVKAAQAA 430
G+IL+DG I K+ L LRS++ ++ Q+P+LFS +I+ N+ G+ S E + +A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+ +F+ L G +T V + G LS GQ+Q + +ARAL+R KIL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 491 IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
++Q+ + +A + T++ IAHRL TI +D I VL GRV+E S
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 1e-56
Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 13/243 (5%)
Query: 293 QATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT------- 345
AA +F ++D P + T A +EF V +YP R
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKA-PVTAAPAP-SLEFSGVSVAYPGRRPALRPVSFTVP 346
Query: 346 ----IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
+ LVG SG+GKST+++LL F DP +G+I ++G + R Q+ V Q P
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
LF+ +I ENI + +P AS + +A + A + +F+ L G +T +G+ G LSGGQ QR
Sbjct: 407 LFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQR 466
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521
+A+ARA +RD +LLLDE T+ LDAE+E V EAL +QGRT++++ HRL+ AD I
Sbjct: 467 LALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRI 526
Query: 522 GVL 524
VL
Sbjct: 527 VVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 7e-56
Identities = 93/277 (33%), Positives = 155/277 (55%), Gaps = 21/277 (7%)
Query: 291 ISQATTAATRIFEMIDRVP-VINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT------ 343
+ Q +A RI E+ ++ P V T A + + +V F+YP +P
Sbjct: 304 LGQVIASARRINEITEQKPEVTFPTTS---TAAADQVSLTLNNVSFTYPDQPQPVLKGLS 360
Query: 344 ------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397
+ L+G +G GKST++ LL R +DP +G ILL+G I LR + +V+
Sbjct: 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVS 420
Query: 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
Q LFS ++++N+L+ P AS E +++ Q + + + + G +G+ G QLSGG
Sbjct: 421 QRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLL-EDDKGLNAWLGEGGRQLSGG 479
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK 517
+++R+ IARAL+ D +LLLDE T LDAE+ER + E L + +Q +T+++I HRL+ + +
Sbjct: 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ 539
Query: 518 ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554
D I V+ +G++IE G+H L+ + G Y ++ Q
Sbjct: 540 FDRICVMDNGQIIEQGTHQELLA----QQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 4e-55
Identities = 149/461 (32%), Positives = 218/461 (47%), Gaps = 67/461 (14%)
Query: 134 LTSFIGSILVAFLL------SWRLALAALPFSLLFIVPGIVFG-----KVLKDLGAQGKD 182
LT+ + I L SW+LAL A+ +L+ I +V G K + L GK
Sbjct: 254 LTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGK- 312
Query: 183 AYEAAGGIAEQ---AISSIRT----VYSFVGEHQTLKRFSLALRKNMELG-IKQGLT--- 231
G+ Q IS +R +F + K FS + + I+ LT
Sbjct: 313 ----ISGLTVQLINGISKLRVAGAENRAF---ARWAKLFSRQRKLELSAQRIENLLTVFN 365
Query: 232 KGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLV-FVAGICTILGGVGIMSALPNLSF 290
L + + + A S+L G + F + G V +S L
Sbjct: 366 AVLPVLTSAALFAA------AISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNT--LIS 417
Query: 291 ISQATTAATRIFEMIDRVPVINSEDEIGKTL-AYLRGEIEFKDVDFSYPTRPDTPT---- 345
I R +++ +P E + KT L G IE V F Y RPD P
Sbjct: 418 ILAVIPLWERAKPILEALP----EVDEAKTDPGKLSGAIEVDRVTFRY--RPDGPLILDD 471
Query: 346 ----------IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395
+ +VG SGSGKST++ LL F P G++ DG + L ++ +R Q+G+
Sbjct: 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531
Query: 396 VNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
V Q L S SI ENI G P +++ +AA+ A + + I + G T + + G LS
Sbjct: 532 VLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLS 590
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515
GGQ+QR+ IARAL+R P+ILL DEATSALD ++ IV E+L++ T I+IAHRLSTI
Sbjct: 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER--LKVTRIVIAHRLSTI 648
Query: 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
R AD I VL +GRV++ G++D LM G ++++ + Q
Sbjct: 649 RNADRIYVLDAGRVVQQGTYDELMA----REGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 2e-53
Identities = 156/499 (31%), Positives = 236/499 (47%), Gaps = 54/499 (10%)
Query: 74 ERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAH 133
+R + I + Y+K + + FF S+ T ++V+ T DA SI DA+A I +
Sbjct: 225 QRLSIDIILSYIKHLFELPMSFF----STRRTGEIVSRFT-DASSIIDALASTILSLFLD 279
Query: 134 LTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAG----G 189
+ + L + L L +L ++ V I+F + L DA +A
Sbjct: 280 MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLN---HDAMQANAVLNSS 336
Query: 190 IAEQAISSIRTVYSFVGE----HQTLKRFSLALRKNMELGIK---QGLTKGLLLGSMGMT 242
I E ++ I T+ S E + F L K+ + Q K + + +
Sbjct: 337 IIED-LNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVV 395
Query: 243 YGAWAFQSWVGSVLVTERGEKGG--LVFVAGICTILGGV-GIMSALPNLSFISQATTAAT 299
W G+ LV G + F A + L + I++ P L A A
Sbjct: 396 I------LWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQ---AARVANN 446
Query: 300 RIFEMIDRVPVINSEDEIGKTLAY---LRGEIEFKDVDFSYP-----------TRPDTPT 345
R+ E V +++SE K L G+I DV +SY T
Sbjct: 447 RLNE----VYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSK 502
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+VG SGSGKST+ LL F+ G ILL+G +K + LR + + QEP +FS
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG 562
Query: 406 SIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
SI EN+L+G K S + + A + A + D I + GY+T++ + G +SGGQKQRIA+
Sbjct: 563 SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622
Query: 465 ARALIRDPKILLLDEATSALDAESE-RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523
ARAL+ D K+L+LDE+TS LD +E +IV L+ Q +T+I +AHRLS +++D I V
Sbjct: 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIV 680
Query: 524 LQSGRVIESGSHDVLMQMN 542
L G++IE GSHD L+ N
Sbjct: 681 LDHGKIIEQGSHDELLDRN 699
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-53
Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 18/347 (5%)
Query: 874 KQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAG 933
Q + + +F++ S L F A ++ +S F AF + G
Sbjct: 354 AQRIENLLTVFNAVLPVLTSAAL-FAAAISLLGGAGLSLG-SFLAFN--TAFGSFSGAVT 409
Query: 934 SMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTK--GFIELKNVFFSYPSRP 991
+++ + +I + + +R I P+ E +P K G IE+ V F Y RP
Sbjct: 410 QLSNTL----ISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY--RP 463
Query: 992 DQM-IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050
D I ++L+IE G+ VA+VG SGSGKST++ L+ F P+SGSV D +++ +++
Sbjct: 464 DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ 523
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYC 1110
+R + +V Q L +G+I +NI G T E +AA +A E I + G T
Sbjct: 524 AVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVI 582
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVV 1170
E G LSGGQ+QR+ +ARA+++ P ILL DEATSALD+ ++ +V E+LE++ V R +V
Sbjct: 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IV 640
Query: 1171 VAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+AHRLSTI+ AD I V+ G+VV+QGT L M G + L + Q
Sbjct: 641 IAHRLSTIRNADRIYVLDAGRVVQQGTYDEL--MAREGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 2e-52
Identities = 87/218 (39%), Positives = 132/218 (60%), Gaps = 1/218 (0%)
Query: 985 FSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044
F+YP D + + ++ G+ + + G +GSGKST++ LI+R +D G + + +
Sbjct: 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1045 KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTED 1104
L RS +A+VSQ P LF+ T+ NI G+ AT+ EI A LA+ H+ I
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164
GYDT GERGV LSGGQKQRI++ARA+L N IL+LD+A SA+D +E+ + L +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE 499
Query: 1165 GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
GRT ++ AHRLS + +A I+V+++G + ++G L
Sbjct: 500 GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-52
Identities = 96/250 (38%), Positives = 147/250 (58%), Gaps = 5/250 (2%)
Query: 968 EDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027
D G I++ NV F+Y R D ++ + + L + + VALVG +GSGKST+ L+
Sbjct: 331 NDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388
Query: 1028 RFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087
+Y G + +D R + S + LR +A+V Q+P + A T N+ G+++ +E ++
Sbjct: 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDI-SEEQVW 447
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
+A E S DG T GE+G LS GQKQ +ALAR +++ P IL+LDEAT+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
DS +E +Q+AL + T VV+AHRLSTI +AD I+V+ G+ VEQGT LL+
Sbjct: 508 DSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLA--AQ 565
Query: 1208 GAYYSLIKMQ 1217
G Y+ + ++Q
Sbjct: 566 GRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-52
Identities = 101/282 (35%), Positives = 155/282 (54%), Gaps = 24/282 (8%)
Query: 289 SFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT--- 345
S + QA A R+FE++D D+ + L G I+ +V F+Y R D
Sbjct: 306 SMLQQAVVAGERVFELMDGPRQQYGNDD--RPLQ--SGRIDIDNVSFAY--RDDNLVLQN 359
Query: 346 ----------IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395
+ LVG +GSGKST+ SLL +Y +G I LDG + L LR + +
Sbjct: 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419
Query: 396 VNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
V Q+P++ + + N+ +G+ S E V +A + + + L DG T +G+ G LS
Sbjct: 420 VQQDPVVLADTFLANVTLGRD-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515
GQKQ +A+AR L++ P+IL+LDEAT+ +D+ +E+ +Q+AL + T+++IAHRLSTI
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTI 538
Query: 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557
+AD I VL G+ +E G+H L+ G Y +M QLQ
Sbjct: 539 VEADTILVLHRGQAVEQGTHQQLLAAQ----GRYWQMYQLQL 576
|
Length = 592 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-50
Identities = 75/214 (35%), Positives = 136/214 (63%), Gaps = 5/214 (2%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
I LVG SG+GK+++++ L F P +G++ ++G ++++L + R + V Q P L
Sbjct: 379 IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG 437
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
++++N+L+G P AS E + +A + A V +F+ L G +T +G LS GQ QR+A+A
Sbjct: 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQ 525
RAL++ ++LLLDE T++LDA SE++V +AL+ AS+ +T +++ H+L + + D I V+Q
Sbjct: 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557
Query: 526 SGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSA 559
G++++ G + L Q GG ++ ++ +Q
Sbjct: 558 DGQIVQQGDYAELSQ----AGGLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 1e-48
Identities = 117/474 (24%), Positives = 202/474 (42%), Gaps = 56/474 (11%)
Query: 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKI-PNC 130
A R +R+ + + RQ + ++ + +D ++QD I P
Sbjct: 80 AALRSLGALRVRVYERLARQALAG----RRRLRRGDLLGRLGADVDALQDLYVRVIVPAG 135
Query: 131 LAHLTSFIGSILVAFLLSWRLALAALPFSLL--FIVPGIVF--GKVLKDLGAQGKDAYEA 186
+A + ++ +LS AL LL F+ P + + + A+ + A
Sbjct: 136 VALVVG-AAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAA 194
Query: 187 -------------AGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKG 233
A G A++ + + + + R + LT
Sbjct: 195 QLTDALDGAAELVASGALPAALAQVEEA-----DRELTR---AERRAAAATALGAALTL- 245
Query: 234 LLLGS--MGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPN-LSF 290
L G +G W G V + G + + L +ALP
Sbjct: 246 LAAGLAVLGAL--------WAGGPAVAD-GRLAPVTLAVLVLLPLAAFEAFAALPAAAQQ 296
Query: 291 ISQATTAATRIFEMID-RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT---- 345
+++ AA RI E++D PV + + +E +D+ YP P
Sbjct: 297 LTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSL 356
Query: 346 -------IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ 398
+ ++G SGSGKST+++ L DP++G + LDG + L +R ++ + Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 399 EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ LF T+++EN+ + +P A+ E + A + + D++ L DG +T +G+ G +LSGG+
Sbjct: 417 DAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
+QR+A+ARAL+ D ILLLDE T LDAE+ + E L A GRT+++I H L
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 2e-48
Identities = 79/227 (34%), Positives = 133/227 (58%), Gaps = 24/227 (10%)
Query: 973 PTKGFIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
P G IE++N+ Y PD + K ++ K++AG+ + +VG++G+GKST+I + RF +
Sbjct: 2 PEHGEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE 59
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI-VYGKEVATEAEIRKAA 1090
+ G + +D +I + L LRS + ++ Q+PTLF+GTIR N+ + + ++ EI A
Sbjct: 60 AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--SDEEIYGAL 117
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
++ E G+ LS GQ+Q + LARA+LK P +L+LDEAT+++D A
Sbjct: 118 RVS------------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159
Query: 1151 SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
++ L+Q+ + + T + +AHRL TI D I+V+ G+V E
Sbjct: 160 TDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 8e-48
Identities = 103/415 (24%), Positives = 189/415 (45%), Gaps = 25/415 (6%)
Query: 776 LLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEG- 834
L ++V A +A + +A++ + + + +S +A ++ +
Sbjct: 126 LYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQAL 185
Query: 835 ----SQLASEATTNHR---TITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQ 887
+LA++ T + A + L E + + + + + +G +
Sbjct: 186 ARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTL 245
Query: 888 FLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMS------TGKNIADAGSMTSDIAK 941
++ W G + G ++P L A +L+ A A +T A
Sbjct: 246 LAAGLAVLGALWAGGPAVADGRLAPVTL--AVLVLLPLAAFEAFAALPAAAQQLTRVRA- 302
Query: 942 GSSAIRTIFTILDRKSEI-DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLT 1000
+A R I +LD + + P A K +EL+++ YP + G++
Sbjct: 303 --AAER-IVEVLDAAGPVAEGSAPAAGA--VGLGKPTLELRDLSAGYP--GAPPVLDGVS 355
Query: 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVS 1060
L + G+ VA++G SGSGKST++ + DP G V +D + S + ++R +++ +
Sbjct: 356 LDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCA 415
Query: 1061 QEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120
Q+ LF T+R+N+ + AT+ E+ A +++ + DG DT GE G +LSGG
Sbjct: 416 QDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGG 475
Query: 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRL 1175
++QR+ALARA+L + ILLLDE T LD+ + + + E L + GRT V++ H L
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 1e-47
Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 2/230 (0%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+G + ++NV P + +G++ ++AG+ +A++G SGSGKST+ LI + P S
Sbjct: 314 EGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094
GSV +D ++K ++ I + Q+ LF GT+ +NI E A +I +AA LA
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
HE I DGYDT G G LSGGQ+QRIALARA+ +P +++LDE S LD E
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 1155 VQEALEKMMV-GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ A++ + G T VV+ HR S + D I+V+++G++ G + +L+
Sbjct: 493 LANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 5e-47
Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 41/219 (18%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ + NV FSYP + +Q + K L+L+++ G+ +AL+G+SGSGKST++ L+ PQ G +
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+D + + L S I++++Q P LF T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
G + SGG++QR+ALAR +L++ I+LLDE T LD +E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196
+ +++ +T + + H L+ I+ D I+ ++NGK++ QG
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 5e-47
Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 52/220 (23%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQ 1033
+E++NV F YP + + + ++ IE G+++A++G SGSGKST I+GL+ P
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR----PT 55
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA 1093
SG V +D +I ++ +L + + Q+ LF+G+I +NI
Sbjct: 56 SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------- 96
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
LSGGQ+QR+ LARA+ NP IL+LDE S LD E
Sbjct: 97 -----------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133
Query: 1154 LVQEALEKM-MVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
+ +A+ + G T +V+AHR T+ AD I+V+++G+V
Sbjct: 134 ALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 6e-46
Identities = 85/230 (36%), Positives = 136/230 (59%), Gaps = 2/230 (0%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+G + ++ + + P + + I KG++ ++AG+ + ++G SGSGKST+ L+ + P S
Sbjct: 332 QGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094
GSV +D +++ ++ +L I + Q+ LF GTI +NI E A ++ +AA LA
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
HE I GYDT GE G LSGGQ+QRIALARA+ +P +++LDE S LDS E
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1155 VQEALEKMMV-GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ A+ G T VV+AHR S + D I+V+++G++ G + +L+
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 3e-45
Identities = 91/240 (37%), Positives = 143/240 (59%), Gaps = 6/240 (2%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G I + +V +SY + I ++L I+ +VG SGSGKST+ L+ F+ +SG
Sbjct: 472 GDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLAN 1094
++++ ++K + LR I + QEP +F+G+I +N++ G KE ++ EI A +A
Sbjct: 530 EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAE 589
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
+ I + GY T E G +SGGQKQRIALARA+L + +L+LDE+TS LD+ +E
Sbjct: 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKK 649
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+ L + +T + VAHRLS +++D I+V+ +GK++EQG+ LL G Y SLI
Sbjct: 650 IVNNLLNLQ-DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD--RNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 4e-45
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 10/209 (4%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM----GLVNQEPI 401
+G++G SGSGKST+ LL + P G++ LDG +++ W R Q+ G + Q+
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVE 420
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
LF +I ENI A E V++AA+ A VH+ I++L GY+T++G+ G LSGGQ+QR
Sbjct: 421 LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR 480
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRKADL 520
IA+ARAL DP +++LDE S LD+E E + A+ A ++G T+++IAHR S + D
Sbjct: 481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDK 540
Query: 521 IGVLQSGRVIESGSHD-VLMQMNNGEGGA 548
I VLQ GR+ G + VL ++
Sbjct: 541 ILVLQDGRIAAFGPREEVLAKVLRPPPRQ 569
|
Length = 580 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 3e-44
Identities = 159/578 (27%), Positives = 262/578 (45%), Gaps = 106/578 (18%)
Query: 695 LYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAA 754
++ L+ +G+ I + I + ++ +++ ++ + L+ +F ++ G F D N +
Sbjct: 100 IFSLVLIGI--FQFILSFISSFCMDVVTTKILKTLKLEFLKSVF-YQDGQF-HDNNPGSK 155
Query: 755 ICARLANEAHLVRSFIADRMSLLIQVFFSASLA-YTLSLLVTWRVAIVMIAVQPLNIGCF 813
+ + L V + I + + I + SA L Y SL R+ + + V PL
Sbjct: 156 LTSDLDFYLEQVNAGIGTKF-ITIFTYASAFLGLYIWSLFKNARLTLCITCVFPL----I 210
Query: 814 YSRSVLMKSMSEKAKKS----QSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPK 869
Y V+ + KK+ + + EA RT+ ++ + IL F + K
Sbjct: 211 YICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYS 270
Query: 870 KESIKQSWFSG--IGLFSSQFLTTASITLTFWYAGRIMNQGLVS--PKQLFQ-------- 917
K +K ++ IG+ + L AS FWY RI+ L + P F
Sbjct: 271 KYILKANFMESLHIGMINGFIL--ASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISIL 328
Query: 918 -----AFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDP-EDPKASEDIE 971
+ F+L NI ++ K A +++ I++RK ++ +D K +DI+
Sbjct: 329 LGVLISMFMLTIILPNI-------TEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIK 381
Query: 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
+ I+ KNV F Y +R D I+K L + GKT A VG+SG GKSTI+ LIER YD
Sbjct: 382 K-----IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436
Query: 1032 PQSGSVMVD-------------------------------ERNIKS--YNLRKLR----- 1053
P G ++++ + NIK Y+L+ L
Sbjct: 437 PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNY 496
Query: 1054 ----------------SCIALVSQEPTLFAGTIRQN--IVYGKEVAT--EAEIRKAAVLA 1093
SC A + + + T N I K T ++E+ +
Sbjct: 497 YNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV 556
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
H+F+S+ D Y+T G +LSGGQKQRI++ARA+++NP IL+LDEATS+LD+ SE
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616
Query: 1154 LVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKN 1189
LVQ+ + + R +++AHRLSTI+ A+ I V+ N
Sbjct: 617 LVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-42
Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 28/223 (12%)
Query: 978 IELKNVFFSYPSRPDQ--MIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYD 1031
I +++ F++ S + K + L++ G+ VA+VG GSGKS+ ++G +E+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--- 57
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAV 1091
SGSV V IA VSQEP + GTIR+NI++GK + E + +
Sbjct: 58 -LSGSVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPF--DEERYEKVI 101
Query: 1092 LANA-HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
A A + DG T GE+G+ LSGGQKQRI+LARAV + I LLD+ SA+D+
Sbjct: 102 KACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161
Query: 1151 SEN-LVQEAL-EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGK 1191
+ + + ++ +T ++V H+L + AD IVV+ NG+
Sbjct: 162 VGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 79/242 (32%), Positives = 121/242 (50%), Gaps = 43/242 (17%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----P 1032
IEL+++ Y + K ++L I G+ AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1033 QSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG---------KEVA 1081
G V++D ++I ++ +LR + +V Q+P F G+I N+ YG +E+
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1082 TEAE--IRKAA----VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135
E +RKAA V H + LSGGQ+QR+ LARA+ P
Sbjct: 118 ERVEEALRKAALWDEVKDRLH-----------------ALGLSGGQQQRLCLARALANEP 160
Query: 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
+LLLDE TSALD S ++E + ++ T V+V H + + AD + NG++VE
Sbjct: 161 EVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220
Query: 1195 QG 1196
G
Sbjct: 221 FG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 7e-41
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 30/235 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++N+ F Y +P I L+ I G+ ++G +GSGKST++ + P+SG V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV-YGK----------EVATEAEI 1086
++D ++I S + ++L +A V Q P+ G +V G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1087 RKAAVLANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATS 1145
+A L +R V +LSGG++QR+ +ARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1146 ALDSASENLVQEALEKMMV--GRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
LD A + V E L + G T V+V H L+ + AD+++++K+GK+V QGT
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-40
Identities = 89/195 (45%), Positives = 133/195 (68%), Gaps = 14/195 (7%)
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAAN 431
G ILLDG I LK LR+ +V+QEP+LF+ SI ENI GK A+ E V +A + A
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
+ +FI L + Y+T VG +G LSGGQKQRIAIARAL+R+PKILLLDEATS+LD+ SE++
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 492 VQEAL----DQASQGRTMIIIAHRLSTIRKADLIGVL----QSGRVIES-GSHDVLMQMN 542
+++ + D+A +T+I IAHR+++I+++D I V ++G +++ G+H+ L+ +
Sbjct: 1397 IEKTIVDIKDKAD--KTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ 1454
Query: 543 NGEGGAYSKMVQLQQ 557
+ G Y K V+L +
Sbjct: 1455 D---GVYKKYVKLAK 1466
|
Length = 1466 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-40
Identities = 102/306 (33%), Positives = 156/306 (50%), Gaps = 25/306 (8%)
Query: 252 VGSVLVTERGEKGGLVFVAGICTILGGVG---IMSALPNLSFISQATTAATRIFEMIDRV 308
+G+ L GE + +AG +IL G I A+ S A A R+ E++
Sbjct: 245 LGAYLAI-DGEITPGMMIAG--SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANY 301
Query: 309 PVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT-------------IGLVGSSGSG 355
P S D L G + ++V P PT + ++G SGSG
Sbjct: 302 P---SRDPAMP-LPEPEGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSG 356
Query: 356 KSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK 415
KST+ L+ + P G++ LDG +K+ + +G + Q+ LF ++ ENI
Sbjct: 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG 416
Query: 416 PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475
A E +++AA+ A VH+ I++L DGY+T +G G LSGGQ+QRIA+ARAL DPK++
Sbjct: 417 ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLV 476
Query: 476 LLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
+LDE S LD E E+ + A+ ++G T+++I HR S + D I VLQ GR+ G
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
Query: 535 HDVLMQ 540
D ++
Sbjct: 537 RDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-40
Identities = 82/239 (34%), Positives = 133/239 (55%), Gaps = 22/239 (9%)
Query: 978 IELKNVFFSYPSRPDQMI--FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
IEL+NV ++ + ++L+I G+ ++G SG+GKST++ LI P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1036 SVMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA----TEAEIR 1087
SV VD +++ + + LR+LR I ++ Q L + T+ +N+ + E+A E + R
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
A +L + D D Y QLSGGQKQR+A+ARA+ NP ILL DEATSAL
Sbjct: 122 VAELLE-----LVGLSDKADRY----PAQLSGGQKQRVAIARALANNPKILLCDEATSAL 172
Query: 1148 DSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
D + + E L+ + +G T V++ H + +++ D + V+ G++VE+GT S + +
Sbjct: 173 DPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231
|
Length = 339 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 2e-40
Identities = 79/236 (33%), Positives = 118/236 (50%), Gaps = 42/236 (17%)
Query: 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKG 372
IE +D++ Y + P L+G SG GKST++ LL R D P +G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 373 NILLDGHKIKKLQLK--WLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVV 424
+LLDG I L + LR ++G+V Q+P F SI +N+ G K ++ V
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERV 120
Query: 425 -----KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479
KAA V D +L+ + LSGGQ+QR+ +ARAL +P++LLLDE
Sbjct: 121 EEALRKAALWDEVKD---RLH----------ALGLSGGQQQRLCLARALANEPEVLLLDE 167
Query: 480 ATSALDAESERIVQEALDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGS 534
TSALD S ++E + + + T++I+ H + R AD L +GR++E G
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 8e-40
Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 48/220 (21%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ELKNV Y + + ++L IEAG+ VAL+G SGSGKST++ I +P SGS+
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1038 MVDERNIKSYN--LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLAN 1094
++D ++ L LR I +V Q+ LF T+ +NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
LSGGQ+QR+ALARA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1155 VQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191
V+ L+ + +G T V+V H L + AD +VV+++GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 26/233 (11%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKST---IIGLIERFYDPQ 1033
IELKNV Y ++ K + L+IEAG+ VA+VG SGSGKST ++G +++ P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1034 SGSVMVDERNIKSYNLRKL----RSCIALVSQEPTLFAG-TIRQNI----VYGKEVATEA 1084
SG V+++ +++ + ++L R I V Q L T+ +N+ + + A
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1085 EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
+ +L + +LSGGQ+QR+A+ARA++ NP I+L DE T
Sbjct: 119 KRAAEELLEVLG--LEDRLLKKKPS------ELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 1145 SALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195
LDS + V E L ++ G+T ++V H + AD ++ +K+GK+ E+
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-39
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 52/218 (23%)
Query: 328 IEFKDVDFSYPTRPDT------------PTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
+ +V FSYP + I L+G SGSGKST++ LL P +G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
LDG + L+ K L S + ++NQ P LF T+++ N+
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
G + SGG++QR+A+AR L++D I+LLDE T LD +ER +
Sbjct: 96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
Query: 496 LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
+ + + +T+I I H L+ I D I L++G++I G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 3e-39
Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 14/219 (6%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
ELKN+ FSYP + ++L I+ G+ V +VG +GSGKST++ L+ P SG V+
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1039 VDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIVYGKEVA--TEAEIRKAAVLAN 1094
VD +++ +L++LR + LV Q P F T+ + + +G E E EI + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
+ D + LSGGQKQR+A+A + +P ILLLDE T+ LD A
Sbjct: 120 ELVGLEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1155 VQEALEKMM-VGRTCVVVAHRLSTI-QKADNIVVIKNGK 1191
+ E L+K+ G+T ++V H L + + AD ++V+++GK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 6e-39
Identities = 147/553 (26%), Positives = 263/553 (47%), Gaps = 57/553 (10%)
Query: 696 YCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAI 755
Y LI+ L+F ++ L+ Y + + +R+ + ML I + +F N I
Sbjct: 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRI 1012
Query: 756 CARLA--------NEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQP 807
R A N A V F+ ++ L+ F + T+SL W A+ P
Sbjct: 1013 INRFAKDLGDIDRNVAVFVNMFLG-QIFQLLSTFVLIGIVSTISL---W-------AIMP 1061
Query: 808 LNIGCFYSRSVLMKSMSEKAKK----SQSEGSQLASEATTNHRTITAFSSQDRILDLFRE 863
L + FY + +S + + K+ ++S EA TI A+ + DR+ ++
Sbjct: 1062 LLVL-FYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGR 1120
Query: 864 TMKGPKKESIKQSWFSGIGLFSSQFLTTASITL---TFWYAGR--IMNQGLVSPKQLFQA 918
+M +I+ F+ + + S+++L TL W +M G + F +
Sbjct: 1121 SMD----NNIR---FTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFAS 1173
Query: 919 FF-LLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS---EIDPEDPKASEDIEEP- 973
LL+S NI S+ + + + +S ++R ++ E P E+ P
Sbjct: 1174 TMGLLLSYALNIT---SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPP 1230
Query: 974 ---TKGFIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029
+ G I+ ++V Y RP+ + GL+ +I + V +VG++G+GKS+++ + R
Sbjct: 1231 GWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI 1288
Query: 1030 YDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKA 1089
+ + G +++D +I + L LR + ++ Q P LF+GT+R N+ E +A++ ++
Sbjct: 1289 VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWES 1347
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
A+ + I G D E G S GQ+Q ++LARA+L+ IL+LDEAT+A+D
Sbjct: 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407
Query: 1150 ASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGA 1209
++ L+Q+ + + T +++AHRL+TI D I+V+ G+VVE T +LLS N G+
Sbjct: 1408 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS--NEGS 1465
Query: 1210 YYSLIKMQASRSP 1222
+S KM S
Sbjct: 1466 AFS--KMVQSTGA 1476
|
Length = 1622 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 6e-39
Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 17/236 (7%)
Query: 978 IELKNVFFSYPSRPDQMI-FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
IELKNV + ++ K ++L + G+ ++G+SG+GKST+I I P SGS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1037 VMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVL 1092
V+VD ++ + LRK R I ++ Q L + T+ +N+ E+A KA +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV---PKAEIE 118
Query: 1093 ANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
E + ED D Y QLSGGQKQR+ +ARA+ NP +LL DEATSALD
Sbjct: 119 ERVLELLELVGLEDKADAYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 1151 SENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ + L + +G T V++ H + +++ D + V++ G+VVE+GT + +
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 6e-39
Identities = 143/562 (25%), Positives = 265/562 (47%), Gaps = 59/562 (10%)
Query: 682 FIKDDSKLKSETR-LYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTF 740
D S KS + Y +++ L F + + H +R+ + ML I
Sbjct: 937 IWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRA 996
Query: 741 EIGWFDQDENTSAAICARLA--------NEAHLVRSFIADRMSLLIQVFFSASLAYTLSL 792
+ +F N + + R + N A+L+ F M+ L Q+ + +L T+S
Sbjct: 997 PMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMF----MNQLWQLLSTFALIGTVST 1050
Query: 793 LVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKK----SQSEGSQLASEATTNHRTI 848
+ W A+ PL I FY+ + +S S + ++ ++S EA +I
Sbjct: 1051 ISLW-------AIMPLLI-LFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSI 1102
Query: 849 TAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITL---TFWYAGR-- 903
A+ + DR+ + ++M +I+ F+ S+++LT TL W
Sbjct: 1103 RAYKAYDRMAKINGKSMD----NNIR---FTLANTSSNRWLTIRLETLGGVMIWLTATFA 1155
Query: 904 IMNQGLVSPKQLFQAFF-LLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSE-IDP 961
++ G + F + LL+S NI + S + + +S ++R ID
Sbjct: 1156 VLRNGNAENQAGFASTMGLLLSYTLNITT---LLSGVLRQASKAENSLNSVERVGNYIDL 1212
Query: 962 EDPKASEDIEE--------PTKGFIELKNVFFSY-PSRPDQMIFKGLTLKIEAGKTVALV 1012
P + I E P++G I+ ++V Y P P + GL+ + + V +V
Sbjct: 1213 --PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVV 1268
Query: 1013 GQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072
G++G+GKS+++ + R + + G +M+D+ ++ + L LR ++++ Q P LF+GT+R
Sbjct: 1269 GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328
Query: 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132
NI E +A++ +A A+ + I G D E G S GQ+Q ++LARA+L
Sbjct: 1329 NIDPFSE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387
Query: 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
+ IL+LDEAT+++D +++L+Q + + T +V+AHRL+TI D I+V+ +G+V
Sbjct: 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447
Query: 1193 VEQGTQSSLLSMGNGGAYYSLI 1214
+E + LLS + A++ ++
Sbjct: 1448 LEYDSPQELLS-RDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 9e-39
Identities = 107/356 (30%), Positives = 182/356 (51%), Gaps = 31/356 (8%)
Query: 80 IRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIG 139
+++E+LKSV Q+ F DN S T +++ + + K + ++F+G
Sbjct: 132 LKLEFLKSVFYQDGQFHDNNPGSKLT----SDLDFYLEQVNAGIGTKFITIFTYASAFLG 187
Query: 140 SILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEA-AGGIAEQAISSI 198
+ + + RL L L + G++ K +K + + Y I E+A+ I
Sbjct: 188 LYIWSLFKNARLTLCITCVFPLIYICGVICNKKVK-INKKTSLLYNNNTMSIIEEALVGI 246
Query: 199 RTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLV 257
RTV S+ GE LK+F+L+ + + +K + L +G + G ++AF W G+ ++
Sbjct: 247 RTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRII 306
Query: 258 TE---RGEKGGLVFVAGICTILGGVGIMS-----ALPNLSFISQATTAATRIFEMIDRVP 309
+ + +IL GV I LPN++ ++ A ++E+I+R P
Sbjct: 307 ISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKP 366
Query: 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDT-------------PTIGLVGSSGSGK 356
++ + D+ GK L ++ +I+FK+V F Y TR D T VG SG GK
Sbjct: 367 LVENNDD-GKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGK 424
Query: 357 STVISLLERFYDPVKGNILL-DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENI 411
ST++ L+ER YDP +G+I++ D H +K + LKW RS++G+V+Q+P+LFS SIK NI
Sbjct: 425 STILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNI 480
|
Length = 1466 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 33/233 (14%)
Query: 328 IEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDPVKGN 373
+E K++ S+PT + T+GLVG SGSGKST+ + P G+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 374 ILLDGHKIKKL---QLKWLRSQMGLVNQEPI-----LFS--TSIKENILIGKPGASMETV 423
I+ DG + KL K R ++ +V Q+P+ + I E + I
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-----S 116
Query: 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
K A+ V ++ + E + ++ +LSGGQ+QR+AIARAL +PK+L+ DE TSA
Sbjct: 117 KKEARKEAVLLLLVGVGLP-EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175
Query: 484 LDAESERIVQEALD--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
LD + + + L Q G T++ I H L + K AD + V+ +G+++E G
Sbjct: 176 LDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-38
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 35/223 (15%)
Query: 326 GEIEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKSTVISLLERFYDPVK 371
GEIE +++ Y PD P IG+VG +G+GKST+I L RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAAN 431
G I +DG I + L+ LRS + ++ Q+P LFS +I+ N+ + + A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP----FDEYSDEEIYGA-- 116
Query: 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
+V + G+ LS GQ+Q + +ARAL++ P++L+LDEAT+++D ++ +
Sbjct: 117 -------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 492 VQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
+Q+ + + T++ IAHRL TI D I V+ +G V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-38
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 37/234 (15%)
Query: 328 IEFKDVDFSYPTRPDTPTI---------------GLVGSSGSGKSTVISLLERFYDPVKG 372
IE ++V ++ G++G SG+GKST++ L+ P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 373 NILLDGHKIKKL---QLKWLRSQMGLVNQEPILFST-SIKENI-----LIGKPGASMETV 423
++ +DG + L +L+ LR ++G++ Q L S+ ++ EN+ L G P
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP------- 114
Query: 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
KA V + + + G K ++ QLSGGQKQR+AIARAL +PKILL DEATSA
Sbjct: 115 -KAEIKQRVAELLELV--GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSA 171
Query: 484 LDAESERIVQEALDQ--ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
LD E+ + + E L G T+++I H + +++ D + VL GR++E G+
Sbjct: 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 4e-38
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 29/231 (12%)
Query: 978 IELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKST---IIGLIERFYDPQ 1033
IELKN+ +Y +++ KG++L IE G+ VA+VG SGSGKST I+G ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1034 SGSVMVDERNIKSYNLRKL----RSCIALVSQE----PTLFAGTIRQNIVYGKEVATEAE 1085
SG V VD +I + ++L R I V Q P L T +N+ +A
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAG--- 111
Query: 1086 IRKAAVLANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
+ K A E + D + Y +LSGGQ+QR+A+ARA+ +P I+L DE
Sbjct: 112 VPKKERRERAEELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEP 167
Query: 1144 TSALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192
T LDS + V E L ++ G T VVV H + AD I+ +++GK+
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 6e-38
Identities = 89/245 (36%), Positives = 145/245 (59%), Gaps = 24/245 (9%)
Query: 326 GEIEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDPVK 371
G I+F+DV Y RP+ P +G+VG +G+GKS++++ L R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETV--VKAAQA 429
G IL+DG I K L LR +G++ Q P+LFS +++ N+ P ++ +
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL---DPFNEHNDADLWESLER 1350
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
A++ D I + + G + +V + G S GQ+Q +++ARAL+R KIL+LDEAT+A+D ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 490 RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAY 549
++Q+ + + + TM+IIAHRL+TI D I VL +GRV+E + + L+ EG A+
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS---NEGSAF 1467
Query: 550 SKMVQ 554
SKMVQ
Sbjct: 1468 SKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 6e-38
Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 20/230 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IEL+ + S+ R + KG+ L + G+ +A++G SGSGKST++ LI P SG V
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1038 MVDERNI---KSYNLRKLRSCIALVSQEPTLFAG-TIRQNI---VYGKEVATEAEIRKAA 1090
++D +I L +LR + ++ Q LF T+ +N+ + +E EIR+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS- 1149
+ + ED Y +LSGG K+R+ALARA+ +P +LL DE T+ LD
Sbjct: 118 LEKLEAVGLRGAEDLYPA-------ELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 1150 ASENLVQEALE-KMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
AS + K +G T ++V H L T AD I V+ +GK+V +GT
Sbjct: 171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 7e-38
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +N+ F YP R K ++L+IE G+ V L+G +GSGKST++ L+ P SG V
Sbjct: 4 IEAENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1038 MVDERNIKS-YNLRKLRSCIALVSQEPT--LFAGTIRQNIVYG------KEVATEAEIRK 1088
+VD + S +L +LR + LV Q P LF T+ + +G E + +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
A L E D LSGGQKQR+A+A + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEEL-------LDRPPFN----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1149 SASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ E L+K+ G+T ++V H L + + AD +VV+ +GK++ G + + +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 71/215 (33%), Positives = 98/215 (45%), Gaps = 55/215 (25%)
Query: 328 IEFKDVDFSYP------------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
+E ++V F YP + ++ ++G SGSGKST+ L+ P G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
LDG I + L +G + Q+ LFS SI ENIL
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL----------------------- 97
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
SGGQ+QR+ +ARAL +P+IL+LDE S LD E ER + +A
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 496 LDQAS-QGRTMIIIAHRLSTIRKADLIGVLQSGRV 529
+ G T I+IAHR T+ AD I VL+ GRV
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-37
Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 12/244 (4%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++N+ Y D+ G++ ++E G+ L+G +G+GK+T++ ++ P SG +
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+V ++ K+R I V QEP+L+ T+R+N+ + A + K
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEF---FARLYGLSKEEAEERIE 118
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
E + G + ++ LSGG KQR+++A A+L +P +L+LDE TS LD S +
Sbjct: 119 ELLE--LFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 1157 EALEKM--MVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213
E L ++ G T ++ H L + D ++++ +GK++ +GT L G L
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236
Query: 1214 IKMQ 1217
+
Sbjct: 237 EPER 240
|
Length = 293 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 16/223 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE K V +S + I K +++K E G +VG SG+GKST+I LI R DP GS+
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D +IK+ ++ LR I +V Q+P LF GT++ NI YG + E + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-------DVEY 113
Query: 1098 FISSTEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
++S G + R V+ LSGG+ QR+++AR + NP +LLLDE TSALD S +++
Sbjct: 114 YLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 1157 EALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
E + K+ + T + + H + ++ D + G +VE
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 3e-37
Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 33/235 (14%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE+KN+ S+ D+ + KG++L +E G+ V ++G SGSGKST++ + +P SGS+
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1038 MVDERNI-KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-----KEVATEAEIRKAA 1090
VD ++ ++ KLR + +V Q+ LF T+ +N+ K EA +
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 1091 VLAN---AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
+L A + D Y QLSGGQ+QR+A+ARA+ +P ++L DE TSAL
Sbjct: 120 LLEKVGLADKA--------DAYPA----QLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 1148 DSASENLVQEALEKMM----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
D LV E L+ M G T ++V H + ++ AD ++ + GK++E+G
Sbjct: 168 DP---ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 5e-37
Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 28/237 (11%)
Query: 978 IELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+E+KN+ S+P+ + ++ I+ G+T+ LVG+SGSGKST+ I P SGS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1037 VMVDERNIKSYNLRKLRSC---IALVSQE------PTLFAGTIRQNI-----VYGKEVAT 1082
++ D +++ + R + I +V Q+ P + TI + I ++GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
EA +L + E+ + Y +LSGGQ+QR+A+ARA+ NP +L+ DE
Sbjct: 119 EARKEAVLLLLVG---VGLPEEVLNRYPH----ELSGGQRQRVAIARALALNPKLLIADE 171
Query: 1143 ATSALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
TSALD + + + + L+K+ +G T + + H L + K AD + V+ GK+VE+G
Sbjct: 172 PTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 7e-37
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 46/222 (20%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
E++N+ Y R + L+L IEAG+ V ++G +G+GKST++ + P SG ++
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1039 VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098
+D +++ S + ++L IA V Q A L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 1099 ISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
+R +LSGG++QR+ LARA+ + P ILLLDE TS LD A + + E
Sbjct: 91 A------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1158 ALEKM--MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQG 1196
L ++ G+T V+V H L+ + AD ++++K+G++V QG
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 42/236 (17%)
Query: 328 IEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTV---ISLLERFYDPV 370
IE K+V + T G++G SG+GKST+ I+ LER P
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PT 58
Query: 371 KGNILLDGHKIKKL---QLKWLRSQMGLVNQEPILFST-SIKENI-----LIGKPGASME 421
G++L+DG + L +L+ R ++G++ Q L S+ ++ EN+ + G P
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP----- 113
Query: 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481
KA V + + + G E K + QLSGGQKQR+ IARAL +PK+LL DEAT
Sbjct: 114 ---KAEIEERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168
Query: 482 SALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
SALD E+ + + L ++ G T+++I H + +++ D + V++ G V+E G+
Sbjct: 169 SALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +NV Y + L L+I G+ + L+G SGSGK+T + +I R +P SG +
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+D +I+ + +LR I V Q+ LF T+ +NI V + K + A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL---VPKLLKWPKEKIRERAD 115
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
E ++ + +LSGGQ+QR+ +ARA+ +P +LL+DE ALD + + +Q
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 1157 EALEKM--MVGRTCVVVAHRL-STIQKADNIVVIKNGKVVEQGTQSSLL 1202
E +++ +G+T V V H + + AD I ++KNG++V+ GT +L
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-36
Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 10/231 (4%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
IE +NV Y ++ + L IE G+ + L+G SGSGK+T + +I R +P SG
Sbjct: 1 MIEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANA 1095
+++D +I + +LR I V Q+ LF T+ +NI V K + A
Sbjct: 58 ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT---VPKLLGWDKERIKKRA 114
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
E + Y +LSGGQ+QR+ +ARA+ +P ILL+DE ALD + +
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174
Query: 1156 QEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
QE ++++ +G+T V V H + K AD I V+ G++V+ T +L+
Sbjct: 175 QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-36
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 18/196 (9%)
Query: 348 LVGSSGSGKSTV---ISLLERFYDPVKGNILLDGHKI-KKLQLKWLRSQMGLVNQEPILF 403
++G SGSGKST+ ++ LE P G+I +DG + K + LR ++G+V Q+ LF
Sbjct: 33 IIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
Query: 404 S-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQKQ 460
++ EN+ + P VK A + ++L + G K + QLSGGQ+Q
Sbjct: 90 PHLTVLENVTLA-P-----VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQ 143
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-A 518
R+AIARAL DPK++L DE TSALD E V + + A +G TMII+ H + R+ A
Sbjct: 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203
Query: 519 DLIGVLQSGRVIESGS 534
D + + G++IE G
Sbjct: 204 DRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 7e-36
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 27/230 (11%)
Query: 978 IELKNVFFSYPS-RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+E++NV +Y + ++L +E G+ VALVG SG GKST++ +I P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANA 1095
V+VD + V Q+ L T+ N+ G E+ + KA A
Sbjct: 61 VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERA 112
Query: 1096 HEFI-----SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
E + S E+ Y QLSGG +QR+ALARA+ +P +LLLDE SALD+
Sbjct: 113 EELLELVGLSGFENAYPH-------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1151 SENLVQEALEKMMV--GRTCVVVAHRLS-TIQKADNIVVIKN--GKVVEQ 1195
+ +QE L + G+T ++V H + + AD +VV+ G++V +
Sbjct: 166 TREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-35
Identities = 136/524 (25%), Positives = 240/524 (45%), Gaps = 65/524 (12%)
Query: 69 WTRTAERQAS-RIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKI 127
W ++ A+ R+ L S+LR + FF ++ T +V+ + D I VA +
Sbjct: 973 WLISSSLHAAKRLHDAMLNSILRAPMLFFH----TNPTGRVINRFSKDIGDIDRNVANLM 1028
Query: 128 PNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVF---GKVLKDLGAQGKDAY 184
+ L + + + +S A +P +LF + + + ++ L + +
Sbjct: 1029 NMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPI 1088
Query: 185 EAAGGIAEQAISSIRTVYSF------VGEHQTLK-RFSLA---------LRKNMELGIKQ 228
A G A +SSIR ++ G+ RF+LA +R G+
Sbjct: 1089 YAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMI 1148
Query: 229 GLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNL 288
LT + G F S +G +L + I T+L GV L
Sbjct: 1149 WLTATFAVLRNGNAENQAGFASTMGLLLS----------YTLNITTLLSGV-----LRQA 1193
Query: 289 SFISQATTAATRIFEMIDRVPVINSEDEIGKTLAY--LRGEIEFKDVDFSYPTRPDTP-- 344
S + + R+ ID + E + ++ RG I+F+DV Y RP P
Sbjct: 1194 SKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPV 1251
Query: 345 ------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392
+G+VG +G+GKS++++ L R + KG I++D + K L LR
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 393 MGLVNQEPILFSTSIKENILIGKPGASMET--VVKAAQAANVHDFIMKLNDGYETKVGQF 450
+ ++ Q P+LFS +++ NI P + + +A + A++ D I + G + +V +
Sbjct: 1312 LSIIPQSPVLFSGTVRFNI---DPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
G S GQ+Q +++ARAL+R KIL+LDEAT+++D ++ ++Q + + + TM++IAH
Sbjct: 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAH 1428
Query: 511 RLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554
RL+TI D I VL SG+V+E +D ++ + + A+ +MV
Sbjct: 1429 RLNTIIDCDKILVLSSGQVLE---YDSPQELLSRDTSAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+E++ V S+ + + + L +E G+ VA++G SG GKST++ LI P S
Sbjct: 1 MALLEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-KEVATEAEIRKAAVL 1092
G V++D R + I V QE L T+ N+ G + +
Sbjct: 58 GEVLLDGRPVTGPGPD-----IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112
Query: 1093 ANAHEF-ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
++ ED Y QLSGG +QR+A+ARA+ P +LLLDE ALD+ +
Sbjct: 113 ELLELVGLAGFED---KYPH----QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 1152 ENLVQEALEKMM--VGRTCVVVAHRLS-TIQKADNIVVIKNG 1190
+Q+ L ++ +T ++V H + + AD +VV+ N
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 8e-35
Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 38/233 (16%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE+KN+ S+ D + KG+ L ++ G+ V ++G SGSGKST++ I +P SG++
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1038 MVDERNI--KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIR-----KA 1089
++D + N+ +LR + +V Q+ LF T+ +NI T A I+ KA
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENI-------TLAPIKVKGMSKA 110
Query: 1090 AVLANAHEF-----ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
A E ++ D Y QLSGGQ+QR+A+ARA+ NP ++L DE T
Sbjct: 111 EAEERALELLEKVGLADKADAYP-------AQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
Query: 1145 SALDSASENLVQEALEKMM----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192
SALD LV E L+ M G T VVV H + ++ AD ++ + +G++
Sbjct: 164 SALDP---ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 9e-35
Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 14/223 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ELK + +Y S L+L +E G+ +AL+G SG GK+T++ LI P SG +
Sbjct: 1 LELKGLSKTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
++D R++ + I +V Q+ LF T+ +NI +G ++ + KA + A
Sbjct: 58 LIDGRDVTGVPPERRN--IGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVR 112
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
E + + +LSGGQ+QR+ALARA+ + P +LLLDE SALD+ ++
Sbjct: 113 ELLELVGL--EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 1157 EALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
E L+++ +G T + V H AD I V+ G++V+ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-34
Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 60/215 (27%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
E++N+ F Y R ++L ++AG+ VALVG +GSGKST++ I P SG ++
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1039 VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098
+D ++I L +L R+ I Y
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGYV--------------------- 78
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
QLSGGQ+QR+ALARA+L NP +LLLDE TS LD AS + E
Sbjct: 79 ----------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1159 LEKMMV-GRTCVVVAHRLSTIQKA-DNIVVIKNGK 1191
L ++ GRT ++V H + A D ++V+K+GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-34
Identities = 67/210 (31%), Positives = 110/210 (52%), Gaps = 14/210 (6%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
GL+G +G+GK+T++ +L P G IL+ G+ + K + +R ++G V QEP L+
Sbjct: 34 FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPE 92
Query: 406 -SIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQKQRI 462
+++EN+ A + + K + + + L D KV LSGG KQR+
Sbjct: 93 LTVRENLEFF---ARLYGLSKEEAEERIEELLELFGLEDKANKKVRT----LSGGMKQRL 145
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTI-RKAD 519
+IA AL+ DP++L+LDE TS LD ES R + E L + G T+++ H L D
Sbjct: 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD 205
Query: 520 LIGVLQSGRVIESGSHDVLMQMNNGEGGAY 549
+ +L G++I G+ + L + G+G
Sbjct: 206 RVIILNDGKIIAEGTPEELKEKFGGKGVIE 235
|
Length = 293 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 27/234 (11%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
K +E++NV S+ D ++L I+ G+ V L+G SG GK+T++ +I F P S
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 1035 GSVMVDERNIKSY--NLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEV---ATEAEIRK 1088
G +++D +I R I +V Q LF T+ +N+ +G +V +AEI+
Sbjct: 60 GEILLDGEDITDVPPEKRP----IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKA 115
Query: 1089 AAVLANAHEFISSTE-DGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSA 1146
E + +G+ +R QLSGGQ+QR+ALARA++ P +LLLDE SA
Sbjct: 116 RVE-----EALELVGLEGF----ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSA 166
Query: 1147 LDSASENLVQEALEKM--MVGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQGT 1197
LD+ +++ L+++ +G T V V H + + +D I V+ +G++ + GT
Sbjct: 167 LDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-34
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 35/220 (15%)
Query: 328 IEFKDVDFSYPTRPDTPTIGL---------------VGSSGSGKSTVISLLERFYDPVKG 372
I +D F++ + + L VG GSGKS+++S L + + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM--ETVVKAAQAA 430
++ + G + V+QEP + + +I+ENIL GKP E V+KA
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SE 489
D + L DG T++G+ G+ LSGGQKQRI++ARA+ D I LLD+ SA+DA
Sbjct: 108 P--DLEI-LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 490 RIVQEALDQA-SQGRTMIIIAHRLSTIRKADLIGVLQSGR 528
I + + +T I++ H+L + AD I VL +GR
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 4e-34
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 48/218 (22%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++N+ Y + ++L +E G+ L+G +G+GK+T+I +I P SG +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
V ++IK +++ I + +EP+L+ T+R+N+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+LSGG KQR+ALA+A+L +P +L+LDE TS LD S
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1157 EALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192
E L ++ G+T ++ +H L ++ D + ++ NG++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-34
Identities = 75/243 (30%), Positives = 134/243 (55%), Gaps = 30/243 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++N+ +YP+ + K ++L I G+ VAL+G SG+GKST++ + +P SGSV
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1038 MVDERNIKSY---NLRKLRSCIALVSQEPTLFAG-TIRQNIVYGK-----------EVAT 1082
++D +I LR+LR I ++ Q+ L ++ +N++ G+ +
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 1083 EAEIRKAAVLANAHEFISSTED-GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
+ E ++A +++ E G +R QLSGGQ+QR+A+ARA+++ P ++L D
Sbjct: 119 KEEKQRA---------LAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD 169
Query: 1142 EATSALDSASENLVQEALEK--MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
E ++LD AS V + L++ G T +V H++ ++ AD IV +K+G++V G
Sbjct: 170 EPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229
Query: 1199 SSL 1201
+ L
Sbjct: 230 AEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 7e-34
Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 27/220 (12%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKI--KK 383
K+++ P T L+G SG GKST++ L R D V +G +L DG I KK
Sbjct: 18 KNINLDIPKNQVT---ALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVVKAA--QAANVHDF 435
+ + LR ++G+V Q+P F SI +NI G K ++ +V+ + +AA
Sbjct: 75 IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA----- 129
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
L D + ++ + LSGGQ+QR+ IARAL +P++LLLDE TSALD + ++E
Sbjct: 130 ---LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 496 LDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGS 534
+ + + T++I+ H + R +D G ++E G
Sbjct: 187 IQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 2e-33
Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 33/222 (14%)
Query: 329 EFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
E K++ FSYP P + +VG +GSGKST++ LL P G +L
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIG-----KPGASMETVVKAAQ 428
+DG + KL LK LR ++GLV Q P F +++E + G P +E V+ A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
+ L +G + LSGGQKQR+AIA L DP ILLLDE T+ LD
Sbjct: 120 EL------VGL-EGLRDRSPF---TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 489 ERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGR 528
R + E L + ++G+T+II+ H L + + AD + VL+ G+
Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 49/217 (22%)
Query: 319 KTLAYLRGEIEF-KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
K ++ G+ DV + + L+G SGSGKST++ + +P G+IL+D
Sbjct: 4 KNVSKRYGQKTVLNDVSLNIE---AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 378 GHKIKKL--QLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHD 434
G + L +L LR ++G+V Q+ LF ++ ENI +G
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------- 100
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
LSGGQ+QR+A+ARAL DP +LLLDE TSALD + R V+
Sbjct: 101 -------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA 141
Query: 495 ALDQ--ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGR 528
L A G T++++ H L + AD + VL+ G+
Sbjct: 142 LLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 4e-33
Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 23/244 (9%)
Query: 971 EEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY 1030
+ IE++ V S+ R I G+ L + G+ +A++G SGSGKST++ LI
Sbjct: 2 SASPEPLIEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58
Query: 1031 DPQSGSVMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVAT---E 1083
P G +++D +I + L ++R + ++ Q+ LF+ T+ +N+ + T E
Sbjct: 59 RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE 118
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
+ IR+ ++ E + D Y E LSGG ++R+ALARA+ +P +L LDE
Sbjct: 119 SLIRELVLM--KLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEP 172
Query: 1144 TSALDSAS----ENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
TS LD S + L++E + + G T ++V H L ++ AD + V+ +GKV+ +GT
Sbjct: 173 TSGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 1199 SSLL 1202
LL
Sbjct: 231 EELL 234
|
Length = 263 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 25/222 (11%)
Query: 327 EIEFKDVDFSYPTRPDTPTIGL----------VGSSGSGKSTVISLLERFYDPVKGNILL 376
EIEFK+V +S + I + VG SG+GKST+I L+ R DP +G+IL+
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF- 435
DG IK + + LR ++G+V Q+P LF ++K+NI G ++K + +V +
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVEYYL 115
Query: 436 -IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
I+ LN Y T+ + LSGG+ QR++IAR L +P++LLLDE TSALD S I++E
Sbjct: 116 SIVGLNKEYATRDVK---NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 495 ALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
+ + T+I I H + ++ D L G ++E
Sbjct: 173 LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-32
Identities = 73/266 (27%), Positives = 132/266 (49%), Gaps = 37/266 (13%)
Query: 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMI--------FKGLTLKIEAGKT 1008
D + + + + ++N+ Y SR + ++ + G+T
Sbjct: 260 RLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET 319
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN--IKSYNLRKLRSCIALVSQEPTLF 1066
+ LVG+SGSGKST+ ++ P SGS++ D ++ + LR+LR I +V Q+P +
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--Y 377
Query: 1067 AG-----TIRQNI-----VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116
+ T+ + ++G E A +A E + + D Y E
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERR----ARVAELLELVGLPPEFLDRYPHE---- 429
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASE----NLVQEALEKMMVGRTCVVVA 1172
LSGGQ+QR+A+ARA+ P +L+LDE SALD + + NL+++ E++ G T + ++
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFIS 487
Query: 1173 HRLSTIQK-ADNIVVIKNGKVVEQGT 1197
H L+ ++ AD + V+ +G++VE+G
Sbjct: 488 HDLAVVRYIADRVAVMYDGRIVEEGP 513
|
Length = 539 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 77/234 (32%), Positives = 132/234 (56%), Gaps = 6/234 (2%)
Query: 976 GFIELKNVFFSYPS--RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
G I++ ++ Y + +P + K + I+ G+ V + G++GSGKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA 1093
G +++D +I L LRS ++++ Q+P LF+G+IR N+ + T+ + +A +A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIA 133
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
+ S G D E G S GQ+Q LARA ++ IL++DEAT+++D A+EN
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 1154 LVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
++Q+ + RT V +AHR+STI AD ++V+ G +VE T +LL+ +G
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 26/232 (11%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+ELKNV S+ S + K + L IE G+ V L+G SG GKST++ +I +P SG
Sbjct: 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVA------TEAEIRKA 1089
+++D R++ K IA+V Q L+ T+ +NI +G ++ + +++
Sbjct: 60 ILIDGRDVTDLPPEKRG--IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
A L ++ + +QLSGGQ+QR+ALARA+++ P + LLDE S LD+
Sbjct: 118 AKLLGLEHLLNR-----------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1150 ASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
L++ ++K+ +G T + V H AD IVV+ +G++ + GT
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218
|
Length = 338 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 38/248 (15%)
Query: 978 IELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+ ++N+ Y ++L+IE G+T+ +VG+SGSGKST+ L+ P SGS
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1037 VMVDERNIKSYNLRKLRSC-IALVSQEPTLFAGTI--RQNIVYGKEVATEA--------- 1084
+++D + + K + +V Q+P ++ R+ + + +E
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPY---SSLNPRRTV---GRILSEPLRPHGLSKS 117
Query: 1085 --EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
I + ++ R +LSGGQ+QRIA+ARA++ P +L+LDE
Sbjct: 118 QQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE 167
Query: 1143 ATSALDSASE----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
TSALD + + NL+ E ++ G T + ++H L+ ++ D I V+ NG++VE G
Sbjct: 168 PTSALDVSVQAQILNLLLELKKER--GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225
Query: 1198 QSSLLSMG 1205
LLS
Sbjct: 226 TEELLSHP 233
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 48/245 (19%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--- 1034
IE++++ Y D+ K + L I K AL+G SG GKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 1035 --GSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-----------KE 1079
G V++D +NI ++ +LR + +V Q+P F +I N+ YG E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 1080 VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
+ + +KAA L + +D + LSGGQ+QR+ +ARA+ P +LL
Sbjct: 125 IVESSL-KKAA-LWDE------VKDRLHKS----ALGLSGGQQQRLCIARALAVKPEVLL 172
Query: 1140 LDEATSALDSAS----ENLVQEALEKMMVGRTCVVVAHRLSTIQKA----DNIVVIKNGK 1191
+DE TSALD S E L+ E +K T V+V H +Q+A D G+
Sbjct: 173 MDEPTSALDPISTLKIEELITELKKKY----TIVIVTH---NMQQAARVSDYTAFFYLGE 225
Query: 1192 VVEQG 1196
+VE G
Sbjct: 226 LVEFG 230
|
Length = 253 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 3e-32
Identities = 73/199 (36%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+G+ G +GSGKS++ R D G I++DG I KL L LRS++ ++ Q+PILFS
Sbjct: 50 VGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG 109
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
SI+ N L + + + + +A + A + + + L G + V + G S GQ+Q +A
Sbjct: 110 SIRFN-LDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQ 525
RA +R IL++DEAT+++D +E I+Q+ + A RT++ IAHR+STI ADL+ VL
Sbjct: 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLS 228
Query: 526 SGRVIESGSHDVLMQMNNG 544
G ++E + + L+ +G
Sbjct: 229 RGILVECDTPENLLAQEDG 247
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 32/222 (14%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKI--KK 383
KD++ P T L+G SG GKST++ L R D V+G +LLDG I K
Sbjct: 24 KDINLDIPKNKVT---ALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVVKAAQAAN----VH 433
+ + LR ++G+V Q+P F SI +N+ G K E V + + A V
Sbjct: 81 VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140
Query: 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493
D +L+ + LSGGQ+QR+ IARAL P++LL+DE TSALD S ++
Sbjct: 141 D---RLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE 189
Query: 494 EALDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGS 534
E + + + T++I+ H + R +D G ++E G
Sbjct: 190 ELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-32
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 36/236 (15%)
Query: 328 IEFKDVDFSYPTRP-------DTPT---IGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
+E +++ F Y +P P G++G +GSGKST++ L P G +LLD
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPIL-FSTSIKENILIG-KPGASM---------ETVVKA 426
G I L K L ++ V Q P F ++ E +L+G P + E V +A
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
+ + + D +LSGG++QR+ IARAL ++ ILLLDE TS LD
Sbjct: 123 LELLGLEHLADRPVD-----------ELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171
Query: 487 ESERIVQEALDQ--ASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGS-HDVL 538
+ V E L +G T++++ H L+ R AD + +L+ G+++ G+ +VL
Sbjct: 172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-32
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 32/225 (14%)
Query: 328 IEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKSTVISLLERFYDPVKGN 373
+E ++V +Y T + LVG SG GKST++ ++ P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANV 432
+L+DG + G V Q+ L ++ +N+ +G ++ V KA
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112
Query: 433 HDFIMKLN-DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
+ + + G+E + QLSGG +QR+A+ARAL DP +LLLDE SALDA +
Sbjct: 113 EELLELVGLSGFENA---YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQ 169
Query: 492 VQEALDQ--ASQGRTMIIIAHRLS-TIRKADLIGVLQS--GRVIE 531
+QE L G+T++++ H + + AD + VL + GR++
Sbjct: 170 LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 6e-32
Identities = 80/232 (34%), Positives = 130/232 (56%), Gaps = 21/232 (9%)
Query: 325 RGEIEFKDVDFSYPTRPDT--------------PTIGLVGSSGSGKSTVISLLERFYDPV 370
RG +EF++ Y R D +G+VG +G+GKS++ L R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA--SMETVVKAAQ 428
+G I++DG I K+ L LR ++ ++ Q+P+LFS S++ N+ P + S E V A +
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALE 1396
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
A++ F+ L D + + + G LS GQ+Q + +ARAL+R KIL+LDEAT+A+D E+
Sbjct: 1397 LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
Query: 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
+ ++Q + + T++ IAHRL+TI + VL G V E G+ L+Q
Sbjct: 1457 DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 6e-32
Identities = 58/275 (21%), Positives = 125/275 (45%), Gaps = 8/275 (2%)
Query: 653 TLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANL 712
L+ L +GA + LG + + D + L L L +A L L
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSL---IDGNGDERSSLISLAILLIAVGVLQGLL 57
Query: 713 IQH--YNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFI 770
+Q Y +G+ + +R+ +L +I + +FD N+ + +RL N+ +R +
Sbjct: 58 LQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFD--TNSVGELTSRLTNDVSKIRDGL 115
Query: 771 ADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKS 830
D++ L Q + + + W++ +V++A+ PL I + ++ ++ K +K+
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 831 QSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLT 890
++ +A E+ + RT+ AF ++ L+ + + ++ +K IK++ +G+ +Q ++
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 891 TASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMST 925
S L W+ ++ G +S +F AF L
Sbjct: 236 YLSYALALWFGAYLVISGGLSVGTVF-AFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 7e-32
Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 19/192 (9%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEPILFS- 404
++G SGSGKST++ + +P G I++DG K+ K + LR ++G+V Q+ LF
Sbjct: 31 IIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQKQRI 462
++ ENI + VK A + ++L + G K + QLSGGQ+QR+
Sbjct: 91 LTVLENITLAP------IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRV 144
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ----ASQGRTMIIIAHRLSTIRK- 517
AIARAL +PK++L DE TSALD E +V E LD A +G TM+++ H + R+
Sbjct: 145 AIARALAMNPKVMLFDEPTSALDPE---LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201
Query: 518 ADLIGVLQSGRV 529
AD + + GR+
Sbjct: 202 ADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 9e-32
Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 47/274 (17%)
Query: 305 IDRVPVINSEDEIGKTLAYLRGE---IEFKDVDFSYPTRPDTP----------------- 344
+ VP + E I + +++ Y +R
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 345 ----TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH--KIKKLQLKWLRSQMGLVNQ 398
T+GLVG SGSGKST+ +L P G+I+ DG + +L+ LR ++ +V Q
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 399 EPILFS---------TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449
+P +S + E + I G+ A + A V +++L + +
Sbjct: 375 DP--YSSLNPRMTVGDILAEPLRIHGGGS------GAERRARV-AELLELVGLPPEFLDR 425
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMII 507
+ +LSGGQ+QR+AIARAL +PK+L+LDE SALD + V L Q G T +
Sbjct: 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLF 485
Query: 508 IAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
I+H L+ +R AD + V+ GR++E G + + +
Sbjct: 486 ISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519
|
Length = 539 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 42/231 (18%)
Query: 328 IEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKST---VISLLERFYDPV 370
IE K++ +Y + +VG SGSGKST ++ L+R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 371 KGNILLDGHKIKKLQLKWL----RSQMGLVNQEPILFST-SIKENILI-----GKPGASM 420
G + +DG I KL K L R +G V Q L + EN+ + G P
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480
+A + + L D + LSGGQ+QR+AIARAL DPKI+L DE
Sbjct: 118 R--ERAEELLER----VGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEP 167
Query: 481 TSALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTIRKADLIGVLQSGRV 529
T LD+E+ + V E L + G T++++ H AD I L+ G++
Sbjct: 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 29/256 (11%)
Query: 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014
+K+ K+ E+I + T + + +V +L + G+ ++G
Sbjct: 15 QKAFKLLAKGKSKEEILKKTGQTVGVNDV----------------SLDVREGEIFVIMGL 58
Query: 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLRS-CIALVSQEPTLFAG-T 1069
SGSGKST++ I R +P SG V++D ++I + + LR+LR I++V Q L T
Sbjct: 59 SGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRT 118
Query: 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129
+ +N+ +G EV + A A E + E Y E LSGG +QR+ LAR
Sbjct: 119 VLENVAFGLEVQGVPRAEREERAAEALELVG-LEGWEHKYPDE----LSGGMQQRVGLAR 173
Query: 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKM--MVGRTCVVVAHRLS-TIQKADNIVV 1186
A+ +P ILL+DEA SALD +Q+ L ++ + +T V + H L ++ D I +
Sbjct: 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI 233
Query: 1187 IKNGKVVEQGTQSSLL 1202
+K+G++V+ GT +L
Sbjct: 234 MKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 21/196 (10%)
Query: 346 IGLVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQ 398
+ +VG SGSGKST ++ L++ P G +L++G + KL K L R ++G V Q
Sbjct: 34 VAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ 90
Query: 399 EPILFST-SIKENILIGK--PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
L ++ EN+ + G S +AA+ ++++ + + + +LS
Sbjct: 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEE------LLEVLGLEDRLLKKKPSELS 144
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLS 513
GGQ+QR+AIARALI +PKI+L DE T LD+++ + V E L + ++ G+T+I++ H
Sbjct: 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204
Query: 514 TIRKADLIGVLQSGRV 529
+ AD + L+ G++
Sbjct: 205 LAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 43/244 (17%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----P 1032
IE++N+ Y ++ K + L I + AL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1033 QSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG------------K 1078
G V+ D ++I K ++ +LR + +V Q+P F +I NI YG
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 1079 EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138
E+ E ++KAA+ +D + LSGGQ+QR+ +ARA+ P +L
Sbjct: 119 EIV-EESLKKAALW-------DEVKDRLHDS----ALGLSGGQQQRLCIARALAVEPEVL 166
Query: 1139 LLDEATSALDSAS----ENLVQEALEKMMVGRTCVVVAHRLS-TIQKADNIVVIKNGKVV 1193
LLDE TSALD + E L+QE +K T V+V H + + +D +G++V
Sbjct: 167 LLDEPTSALDPIATGKIEELIQELKKKY----TIVIVTHNMQQAARISDRTAFFYDGELV 222
Query: 1194 EQGT 1197
E G
Sbjct: 223 EYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-30
Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 43/259 (16%)
Query: 973 PTKGFIELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIE 1027
+E++N+ + + ++ + ++ ++E G+ + +VG+SGSGKST ++GL+
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 1028 RFYDPQSGSVMVDERNIKSYN---LRKLR-SCIALVSQEP-TLFAG--TIRQNIVYGKEV 1080
SG V++D R++ + +RKLR IA++ Q+P T TI I +E
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI---REA 117
Query: 1081 ------ATEAEIRKAAV-------LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127
+ AE RK AV L + D Y QLSGG +QR+ +
Sbjct: 118 LRLHGKGSRAEARKRAVELLEQVGLPDPE-----RRDRYPH-------QLSGGMRQRVMI 165
Query: 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTI-QKADNI 1184
A A+ P +L+ DE T+ALD ++ + + L+ + G + + H L + + AD +
Sbjct: 166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRV 225
Query: 1185 VVIKNGKVVEQGTQSSLLS 1203
VV+ G++VE G +LS
Sbjct: 226 VVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-30
Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 28/221 (12%)
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST---IIGLIERFYDPQSGS 1036
LKN+ + + +I L L IE GK A++G+SGSGKST IIGL+E+F SG
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQ 54
Query: 1037 VMVDERNIKSYNLRK----LRSCIALVSQEPTLFAG-TIRQNI----VYGKEVATEAEIR 1087
V ++ + N +K R + + Q L T+ +N+ Y K E +
Sbjct: 55 VYLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREK 114
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
K L G + ++ +LSGG++QR+ALARA+LK P ++L DE T +L
Sbjct: 115 KKEALEKV---------GLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSL 165
Query: 1148 DSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI 1187
D + + V + L ++ G+T ++V H ++AD ++ +
Sbjct: 166 DPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 3e-30
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 29/234 (12%)
Query: 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
IE + + S+ R + ++G SGSGKST++ L+ P G +L+D
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 378 GHKIKKL---QLKWLRSQMGLVNQEPILF-STSIKENI---LIGKPGASMETVVKAAQAA 430
G I L +L LR +MG++ Q LF S ++ EN+ L S E + +
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV--- 117
Query: 431 NVHDFIMKLND-GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD-AES 488
+ KL G + +LSGG K+R+A+ARAL DP++LL DE T+ LD S
Sbjct: 118 -----LEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 489 ERIVQEALD-QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
I + G T I++ H L T AD I VL G+++ G+ + L
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 28/204 (13%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPIL 402
+ L+G SG+GKST++ L +P G++L+DG I KL+ L+ LR Q+G++ Q+ L
Sbjct: 30 VALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNL 89
Query: 403 FS-TSIKENILIGKPGA-----------SMETVVKAAQAANVHDFIMKLND-GYETKVGQ 449
S+ EN+L G+ G E +A A L G K Q
Sbjct: 90 IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA---------LERVGLLDKAYQ 140
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMII 507
QLSGGQ+QR+AIARAL++ PK++L DE ++LD S R V + L + ++ G T+I+
Sbjct: 141 RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV 200
Query: 508 IAHRLSTIRK-ADLIGVLQSGRVI 530
H++ R+ AD I L+ GR++
Sbjct: 201 SLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-30
Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 38/251 (15%)
Query: 978 IELKNV---FFSYPSRPDQMIFKGLT------------------LKIEAGKTVALVGQSG 1016
IE+KNV F P R +++ +G + L +E G+ ++G SG
Sbjct: 5 IEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSG 64
Query: 1017 SGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLR-SCIALVSQEPTLFAG-TIR 1071
SGKST++ L+ R +P G ++VD ++I + LR+LR I++V Q L T+
Sbjct: 65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVL 124
Query: 1072 QNIVYGKEVA--TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129
+N+ +G EV +AE + A E + G + Y + +LSGG +QR+ LAR
Sbjct: 125 ENVAFGLEVQGVPKAEREE-----RALEALELV--GLEGYADKYPNELSGGMQQRVGLAR 177
Query: 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKM--MVGRTCVVVAHRLS-TIQKADNIVV 1186
A+ +P ILL+DEA SALD +Q+ L ++ + +T V + H L ++ D I +
Sbjct: 178 ALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237
Query: 1187 IKNGKVVEQGT 1197
+K+G++V+ GT
Sbjct: 238 MKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 6e-30
Identities = 73/209 (34%), Positives = 121/209 (57%), Gaps = 2/209 (0%)
Query: 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053
++ +G++ +I + V +VG++GSGKST++ R + G + V+ R I +Y LR+LR
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
+++ Q+P LF GT+RQN+ E A+ AE+ A L E ++S +G D+ E
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442
Query: 1114 GVQLSGGQKQRIALARAVLK-NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
G S GQ+Q + +ARA+LK +L+DEAT+ +D A + +Q + T + +A
Sbjct: 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIA 1502
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
HRL T+ + D I+V+ +G V E G+ L
Sbjct: 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPREL 1531
|
Length = 1560 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-30
Identities = 76/234 (32%), Positives = 114/234 (48%), Gaps = 29/234 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I + NV + + ++L I++G+ VAL+G SG+GKST++ +I P +G +
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 1038 MVDERNIK-SYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG----KEVATEAEIRKAAV 1091
++ R + NL + V Q LF T+ NI +G KE +EAEIR
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR---- 115
Query: 1092 LANAHEFI-----SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSA 1146
A E + D Y QLSGGQ+QR+ALARA+ P +LLLDE A
Sbjct: 116 -ARVEELLRLVQLEGLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 1147 LDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
LD+ ++ L K+ +G T V V H + AD +VV+ G++ + G
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-30
Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 28/242 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++N+ YP+ + K + L I G+ VA++G SG+GKST++ I R +P SGS+
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1038 MVDERNI---KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA-----------T 1082
+++ +I + LRKLR I ++ Q L T+ +N+++G+ +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
E + +A L+ G +R QLSGGQ+QR+A+ARA+ + P ++L DE
Sbjct: 120 EEDKERA--LSALERV------GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1143 ATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199
++LD + V + L+++ G T ++ H++ +K AD IV +K G++V G S
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 1200 SL 1201
L
Sbjct: 232 EL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 15/195 (7%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
+ L+G SG GK+T++ L+ P G IL+DG + + + R +G+V Q+ LF
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFP 85
Query: 405 T-SIKENILIGKPGASMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQR 461
++ ENI G + V KA A V + +++L +G + + +LSGGQ+QR
Sbjct: 86 HLTVAENIAFG---LKLRGVPKAEIRARVRE-LLELVGLEGLLNR---YPHELSGGQQQR 138
Query: 462 IAIARALIRDPKILLLDEATSALDAES-ERIVQEALD-QASQGRTMIIIAHRLS-TIRKA 518
+A+ARAL R+P +LLLDE SALDA+ E + +E + Q G T I + H + A
Sbjct: 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALA 198
Query: 519 DLIGVLQSGRVIESG 533
D I V+ GR+++ G
Sbjct: 199 DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 43/236 (18%)
Query: 328 IEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKGN 373
+ +++ Y G+VG SGSGKST+ LL P G+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 374 ILLDG-HKIKKLQLKWLRSQMGLVNQEPIL-------FSTSIKENILIGKPGASMETVVK 425
ILLDG K + K + +V Q+P + E + S + + +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 426 AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485
+ + +LSGGQ+QRIAIARALI +PK+L+LDE TSALD
Sbjct: 124 LLDQVGLPPSFLDR----------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 486 AESERIVQ-EALD-----QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
VQ + L+ + +G T + I+H L+ + D I V+ +G+++E G
Sbjct: 174 V----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225
|
Length = 252 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 14/235 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE+KN+ +YP K + L+I G+ VA++G SG+GKST++ + DP SG +
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1038 MVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLA 1093
+ + I LRKLR I ++ Q+ L ++ +N++ G+ + + R L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR-LGYTSTWRSLFGLF 120
Query: 1094 NAHE----FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
+ + + G +R LSGGQ+QR+A+ARA+++ P I+L DE ++LD
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1150 ASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
S V + L+ + G T +V H++ +K AD I+ +K G++V G S L
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-29
Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 21/232 (9%)
Query: 978 IELKNVFFSYPSRPDQMI-FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
IELKN+ +P + ++L I AG+ ++G SG+GKST+I I P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1037 VMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRK-- 1088
V+VD +++ + + LRK R I ++ Q L + T+ N+ E+A +AEI+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
+L + D D Y QLSGGQKQR+A+ARA+ NP +LL DEATSALD
Sbjct: 122 TELLE-----LVGLSDKADRY----PAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 1149 SASENLVQEALEKM--MVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
A+ + E L+ + +G T V++ H + + + D + VI G++VEQGT
Sbjct: 173 PATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 25/220 (11%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC- 1055
L I G+ ++G SGSGKST + ++ R +P +G + +D NI + +LR
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69
Query: 1056 ---IALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRKAAV----LANAHEFISSTEDG 1105
I +V Q+ LF TI QN G E+ E E ++ A+ L E+ D
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD- 128
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-- 1163
+LSGG +QR+ LARA+ P ILL+DEA SALD + +Q+ L+K+
Sbjct: 129 ----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 1164 VGRTCVVVAHRL-STIQKADNIVVIKNGKVVEQGTQSSLL 1202
+ +T V + H L I+ D IV++K G++V+ GT +L
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-29
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 19/224 (8%)
Query: 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
IEF++V Y + + + L+G SGSGK+T + ++ R +P G IL+D
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENI-LIGKPGASMETVVKAAQAANVHDF 435
G I L LR ++G V Q+ LF ++ ENI + K + K +
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK----LLGWDKERIKKRADEL 117
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+ + ++ +LSGGQ+QR+ +ARAL DP ILL+DE ALD + + +QE
Sbjct: 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177
Query: 496 LD--QASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHD 536
+ Q G+T++ + H + ++ AD I V+ +G +++ + D
Sbjct: 178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPD 221
|
Length = 309 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-29
Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 10/229 (4%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+++NV FSYP+ + K ++ +I G+ VA++G +GSGKSTI ++ PQSG +
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEP-TLFAG-TIRQNIVYGKEVATEAEIRKAAVLANA 1095
+D I NL+++R I ++ Q P F G T+ +I +G E + ++ +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
+ + G + Y + LSGGQKQR+A+A + NP I++ DE+TS LD + +
Sbjct: 127 -----AKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 1156 QEALEKMMVGR--TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
++ + + R T + + H + AD ++V GK++ QG +L
Sbjct: 182 KKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 32/238 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ L +V FSY P M F L + AG+ VA++G SG+GKST++ LI F P SG +
Sbjct: 2 LALDDVRFSYGHLP--MRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATE--AEIRKAAVLAN 1094
+++ + + ++++ QE LFA T+ QNI G + AE R+ A
Sbjct: 57 LINGVDHTA--SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A ++ +LSGGQ+QR+ALAR +++ ILLLDE SALD A L
Sbjct: 115 AQVGLAGFLKRLPG-------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA---L 164
Query: 1155 VQEAL--------EKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
E L E+ T ++V H + AD +V + NG++ QG+ LLS
Sbjct: 165 RAEMLALVSQLCDER---KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 9e-29
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 26/226 (11%)
Query: 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IE +++ F YP R + L+G +GSGKST++ LL P G +L+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 377 DGHKIKKLQLKW-LRSQMGLVNQEPI--LFSTSIKENILIGKP--GASMETVVKAAQAAN 431
DG + LR ++GLV Q P LF ++++ + G G E + + A
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEAL 123
Query: 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
++ L + + LSGGQKQR+AIA L P+ILLLDE T+ LD + R
Sbjct: 124 E---LVGLEELLDRPPFN----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 492 VQEALD--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ E L + G+T+II+ H L + + AD + VL G+++ G
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-29
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 45/187 (24%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
GL+G +G+GK+T+I ++ P G I + G IKK + ++ ++G + +EP L+
Sbjct: 29 YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE-VKRRIGYLPEEPSLYEN 87
Query: 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+++EN+ +LSGG KQR+A+
Sbjct: 88 LTVRENL-----------------------------------------KLSGGMKQRLAL 106
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI-RKADLIG 522
A+AL+ DP++L+LDE TS LD ES R E L + +G+T+++ +H L R D +
Sbjct: 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVA 166
Query: 523 VLQSGRV 529
+L +GR+
Sbjct: 167 ILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQ-MGLVNQEPILF 403
++G SGSGKST++ + R +P G +L+DG I + +L+ LR + + +V Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 404 -STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
++ EN+ G + + +AA + ++ L +G+E K +LSGG +QR+
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALE-LVGL-EGWEHKYPD---ELSGGMQQRV 169
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLS-TIRKAD 519
+ARAL DP ILL+DEA SALD R +Q+ L QA +T++ I H L +R D
Sbjct: 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229
Query: 520 LIGVLQSGRVIESG 533
I +++ GR+++ G
Sbjct: 230 RIAIMKDGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 27/231 (11%)
Query: 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IE K++ +YP + ++G SG+GKST++ L DP G IL
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 377 DGHKIKKL---QLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETV------VKA 426
+G +I KL +L+ LR +G++ Q+ L S+ EN+L+G+ G T
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG-YTSTWRSLFGLFSK 122
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
A D + ++ G K Q LSGGQ+QR+AIARAL++ PKI+L DE ++LD
Sbjct: 123 EDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 487 ESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
ES + V + L +Q G T+I+ H++ +K AD I L++GR++ G
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-28
Identities = 77/205 (37%), Positives = 119/205 (58%), Gaps = 32/205 (15%)
Query: 347 GLVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQE- 399
G++G+SG+GKST I+LLER P G +L+DG + L +L+ R Q+G++ Q
Sbjct: 35 GVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHF 91
Query: 400 PILFSTSIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGV 452
+L S ++ +N+ L G P KA A V + L + G K ++
Sbjct: 92 NLLSSRTVFDNVALPLELAGTP--------KAEIKARVTE----LLELVGLSDKADRYPA 139
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAH 510
QLSGGQKQR+AIARAL +PK+LL DEATSALD + R + E L ++ G T+++I H
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199
Query: 511 RLSTIRK-ADLIGVLQSGRVIESGS 534
+ +++ D + V+ +GR++E G+
Sbjct: 200 EMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-28
Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 28/245 (11%)
Query: 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
+ I ++++ F YP + K ++ + G+ VA+VG +GSGKST+ L+ P+
Sbjct: 2 KEEIIRVEHISFRYPDAATYAL-KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEP-TLFAG-TIRQNIVYGKE---VATEAEIRK 1088
+G++ V + + +R + +V Q P F G T++ ++ +G E V E + +
Sbjct: 61 AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER 120
Query: 1089 ---AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
A +F++ +LSGGQKQR+A+A + P I++LDEATS
Sbjct: 121 VDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 1146 ALDSASENLVQEALE-----KMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200
LD +E LE K G T + + H L +AD ++V+ G+++E+GT
Sbjct: 170 MLDPRGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226
Query: 1201 LLSMG 1205
+ G
Sbjct: 227 IFKSG 231
|
Length = 279 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 24/229 (10%)
Query: 320 TLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
+ AY G +DV F P + L G SG+GKST++ L+ P +G IL++GH
Sbjct: 8 SKAYPGGREALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH 64
Query: 380 ---KIKKLQLKWLRSQMGLVNQE-PILFSTSIKENI-----LIGKPGASMETVVKAAQAA 430
++K ++ +LR Q+G+V Q+ +L ++ EN+ +IGKP + V
Sbjct: 65 DLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV--- 121
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SE 489
+ L G + K QLSGG++QR+AIARA++ P +LL DE T LD + S
Sbjct: 122 ------LDLV-GLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174
Query: 490 RIVQEALDQASQGRTMIIIAHRLSTIRKADL-IGVLQSGRVIESGSHDV 537
I++ + G T+++ H L + + + L+ GR++ S V
Sbjct: 175 EIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 42/249 (16%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE+KN+ + Q + G+ L+++ G+ VA++G SGSGK+T++ I P++G++
Sbjct: 4 IEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60
Query: 1038 MVDERNI---KSYN-----LRKLRSCIALVSQEPTLFAG-TIRQNIVYG-----KEVATE 1083
V + I +S + +R+LR + V Q LF T+ +NI+ G E E
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEE 120
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
A R +LA ++ E Y +LSGGQ+QR+A+ARA+ P ++L DE
Sbjct: 121 ATARARELLAKVG--LAGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEP 171
Query: 1144 TSALDSASENLVQEAL--------EKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
TSALD LV E L EK RT V+V H +S + AD + + G++VE
Sbjct: 172 TSALDP---ELVGEVLNTIRQLAQEK----RTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
Query: 1195 QGTQSSLLS 1203
QG +L +
Sbjct: 225 QGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-28
Identities = 65/215 (30%), Positives = 93/215 (43%), Gaps = 50/215 (23%)
Query: 329 EFKDVDFS-YPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK 387
V FS T+GLVG SG GKST+ L+ +P G IL +G I KL
Sbjct: 28 AVDGVSFSIKEGE----TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81
Query: 388 WLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447
+E +L +E V + +
Sbjct: 82 ----------------KEERRERVL-----ELLEKVGLPEEFLYRYPH------------ 108
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER--IVQEALD-QASQGRT 504
+LSGGQ+QRI IARAL +PK+++ DE SALD S + I+ D Q G T
Sbjct: 109 -----ELSGGQRQRIGIARALALNPKLIVADEPVSALDV-SVQAQILNLLKDLQEELGLT 162
Query: 505 MIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538
+ I+H LS +R +D I V+ G+++E G + +
Sbjct: 163 YLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 5e-28
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 20/228 (8%)
Query: 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IEF++V Y + L+G SGSGK+T + ++ R +P G I +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENI-LIGKPGASMETVVKAAQAANVHD 434
DG I++ LR ++G V Q+ LF +++ENI L+ K + K +
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPK----LLKWPKEKIRERADE 116
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
+ + ++ +LSGGQ+QR+ +ARAL DP +LL+DE ALD + +QE
Sbjct: 117 LLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
Query: 495 ALDQASQ--GRTMIIIAHRL-STIRKADLIGVLQSGRVIESGSHDVLM 539
+ Q G+T++ + H + R AD I ++++G +++ G+ D ++
Sbjct: 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 996 FKGLTLKIE---AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSYN 1048
TLKI+ + + G SG+GKST++ I P G+++++ + K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 1049 LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRK--AAVLANAHEFISSTEDG 1105
L + I LV Q+ LF +R+N+ +G + E R +L + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG--LDHLLNR 127
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-- 1163
Y QLSGG+KQR+ALARA+ P +LLLDE SALD A + L+++
Sbjct: 128 YPA-------QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 1164 VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ + V H LS + AD IVV+++G++ G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 7e-28
Identities = 119/466 (25%), Positives = 210/466 (45%), Gaps = 60/466 (12%)
Query: 778 IQVFFSASLAYTLSLLVTWR---------VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAK 828
I + +SA L L+L W VA VM+ + PLN ++ K+
Sbjct: 435 INMIWSAPLQVILALYFLWLNLGPSVLAGVA-VMVLMVPLNA----VMAMKTKTYQVAHM 489
Query: 829 KSQSEGSQLASEATTNHRTITAF----SSQDRILDLFRETMKGPKKESIKQSWFSGIGLF 884
KS+ +L +E + + + + D++ + +E +K KK ++ +G F
Sbjct: 490 KSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKK----SAYLHAVGTF 545
Query: 885 S---SQFLTTASITLTFWYAGRIMNQGLVSPKQLF--QAFFLLMSTGKNIADAGSMTSDI 939
+ + FL TF + ++ ++ F A F ++ NI + S I
Sbjct: 546 TWVCTPFLVALI---TFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILP--MVISSI 600
Query: 940 AKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGL 999
+ S +++ + L + E++P D I+ I + N F++ +R G+
Sbjct: 601 VQASVSLKRLRIFLSHE-ELEP-DSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGI 657
Query: 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059
T I G VA+VGQ G GKS+++ + D G V ++ +A V
Sbjct: 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV-------------HMKGSVAYV 704
Query: 1060 SQEPTLFAGTIRQNIVYGKEVAT---EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116
Q+ + ++R+NI++GK + + + A+L + E + S G T GE+GV
Sbjct: 705 PQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL-EILPS---GDRTEIGEKGVN 760
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL---EKMMVGRTCVVVAH 1173
LSGGQKQR++LARAV N I L D+ SA+D+ + E + E ++ +T ++V H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219
+S + + D I+V+ GK+ E G+ LL GA+ ++ A
Sbjct: 821 GISYLPQVDVIIVMSGGKISEMGSYQELLQ--RDGAFAEFLRTYAP 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 7e-28
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
Query: 69 WTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIP 128
ER RIR +++LRQ +G + ++S ++ + +T+D I+D + +K+
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 129 NCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAG 188
L + +G +V F W+L L L L I+ V K L+ L + + AY AG
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 189 GIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGM-TYGAWA 247
+AE+++S IRTV +F E L+R+ AL + GIK+ +T GL G + +Y ++A
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 248 FQSWVGSVLVTERGEKGGLVFVA 270
W G+ LV G G VF
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAF 263
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 7e-28
Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 34/227 (14%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
++N+ FSY + I L+L + AG+ +AL G++G+GK+T+ ++ SGS++
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1039 VDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIVYGKEVATEAEIRKAAVL---- 1092
++ + IK+ ++ R I V Q+ LF ++R+ ++ G + + VL
Sbjct: 59 LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1093 ----ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
H LSGGQKQR+A+A A+L +L+ DE TS LD
Sbjct: 116 LYALKERHPLS-----------------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
Query: 1149 SASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193
+ V E + ++ G+ +V+ H + K D ++++ NG +V
Sbjct: 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 53/231 (22%)
Query: 978 IELKNVFFSYPSR----PDQMIF--KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
+E+KN+ +P + + G++ I+ G+T+ LVG+SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAV 1091
P SG ++ + ++I + + R + E+ + + + +
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV---------------------LELLEKVGLPEEFL 103
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
HE SGGQ+QRI +ARA+ NP +++ DE SALD +
Sbjct: 104 YRYPHEL-------------------SGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1152 E----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ NL+++ E++ G T + ++H LS ++ +D I V+ GK+VE G
Sbjct: 145 QAQILNLLKDLQEEL--GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
|
Length = 268 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 11/229 (4%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++++ F Y KGL+L I G AL+G +G+GKST++ + Y PQ G V
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKEVATEAEIRKAAVLANA 1095
V R + + N + +RS + LV Q+P +F+ T+ ++ +G + K V
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG---PVNMGLDKDEVERRV 119
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
E + + + + LS GQK+R+A+A + +P +++LDE + LD + +
Sbjct: 120 EEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 1156 QEALEKM-MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLL 1202
E L+++ G+T +V H + + AD ++V+K G+V+ +G +S L
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-27
Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 20/225 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ L + FSY +P M F L G+ A+VG SGSGKST++ LI F PQSG V
Sbjct: 1 VRLDKIRFSYGEQP--MHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKE--VATEAEIRKAAVLAN 1094
+++ ++ + ++++ QE LFA T+ QN+ G + AE R+A +A
Sbjct: 56 LINGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A G +LSGG++QR+ALAR ++++ +LLLDE +ALD A
Sbjct: 114 A-------RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
Query: 1155 VQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ + + + T ++V H+ ++ A +V + NG++ QG
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 18/226 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IEL+NV Y + G++L I+ G+ L+G SG GK+T++ LI F P SG +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRKAAVLAN 1094
++D ++I NL + + V Q LF T+ +NI +G + +AEI++ A
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERV--AE 113
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A + + + Y + QLSGGQ+QR+A+ARA++ P +LLLDE ALD
Sbjct: 114 ALDLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 1155 VQEALEKM--MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
+Q L+++ +G T V V H + +D I V+ GK+ + GT
Sbjct: 169 MQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 41/191 (21%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+G++G +G+GKST++ L P G ILLDG + L K L ++ V Q
Sbjct: 28 VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ------- 80
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
A + + + + +LSGG++QR+ +A
Sbjct: 81 --------------------ALELLGLAHLADRPFN-----------ELSGGERQRVLLA 109
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAHRLS-TIRKADLIG 522
RAL ++P ILLLDE TS LD + + E L + +G+T++++ H L+ R AD +
Sbjct: 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVI 169
Query: 523 VLQSGRVIESG 533
+L+ GR++ G
Sbjct: 170 LLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
+E + V S+ + ++G SG GKST++ L+ P G +LLD
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQA-ANVHDF 435
G + +G V QE L ++ +N+ +G +A +
Sbjct: 64 GRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV 118
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+ G+E K + QLSGG +QR+AIARAL PK+LLLDE ALDA + +Q+
Sbjct: 119 GLA---GFEDK---YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172
Query: 496 LDQ--ASQGRTMIIIAHRLS-TIRKADLIGVLQS--GRVIES 532
L + +T++++ H + + AD + VL + GR+ E
Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214
|
Length = 248 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-27
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 12/192 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-S 406
L+G SG GK+T++ ++ F P G ILLDG I + + + +G+V Q LF +
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMT 93
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLN-DGYETKVGQFGVQLSGGQKQRIAIA 465
++EN+ G + + KA A V + + + +G+ + QLSGGQ+QR+A+A
Sbjct: 94 VEENVAFGL--KVRKKLKKAEIKARVEEALELVGLEGFADRKPH---QLSGGQQQRVALA 148
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAH-RLSTIRKADLIG 522
RAL+ +PK+LLLDE SALDA+ +++ L Q G T + + H + + +D I
Sbjct: 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIA 208
Query: 523 VLQSGRVIESGS 534
V+ GR+ + G+
Sbjct: 209 VMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-27
Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 328 IEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
I+ ++V FSYP + + ++G +GSGKST+ +L P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEP------------ILFSTSIKENILIGKPGASMETV 423
+DG I K LK +R ++G++ Q P I F EN + P + +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL---ENKKV-PPKKMKDII 123
Query: 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
A+ + D++ K Q LSGGQKQR+AIA L +P+I++ DE+TS
Sbjct: 124 DDLAKKVGMEDYL--------DKEPQN---LSGGQKQRVAIASVLALNPEIIIFDESTSM 172
Query: 484 LDAESERIVQEALDQASQGR--TMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
LD + +R +++ + + R T+I I H + AD + V G++I G
Sbjct: 173 LDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 13/239 (5%)
Query: 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
IE+KN+ F Y ++ ++ ++ G+ ++++G +GSGKST + LI+ + +
Sbjct: 1 MSNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEP-TLFAG-TIRQNIVYGKEVATEAEIRKAAV 1091
SG +++D + N+ +R I +V Q P F G T+ ++ +G E
Sbjct: 61 SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
+ A E + G + +LSGGQKQR+A+A AV P I++LDEATS LD
Sbjct: 121 VNEALELV-----GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175
Query: 1152 E----NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGN 1206
++ + T + + H L + +D ++V+KNG+V T L S GN
Sbjct: 176 RLELIKTIKGIRDDY--QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
|
Length = 279 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 33/236 (13%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
IE++N+ SY +RP + + ++L +E G+ AL+G +G+GKST++ I P SG
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTL---FAGTIRQ----------NIVYGKEVATE 1083
+ + + ++ R+ R I V Q+ ++ F T++ +
Sbjct: 61 IKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
++ +A + +LSGGQKQR+ LARA+ +NP +LLLDE
Sbjct: 118 EKVDEALERVGMEDLRDRQIG-----------ELSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 1144 TSALDSASENLVQEALEKM-MVGRTCVVVAHRLST-IQKADNIVVIKNGKVVEQGT 1197
+ +D A + + + L+++ G+T ++V H L + D ++ + N ++ G
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGP 221
|
Length = 254 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-27
Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 12/200 (6%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPIL 402
+ ++G SG+GKST++ + R +P G+ILL+G I KL+ L+ LR ++G++ Q L
Sbjct: 31 VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90
Query: 403 FS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND----GYETKVGQFGVQLSGG 457
++ EN+L G+ G T + D L+ G K Q QLSGG
Sbjct: 91 IERLTVLENVLHGRLG-YKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGG 149
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTI 515
Q+QR+AIARAL + P ++L DE ++LD ++ + V + L + ++ G T+II H++
Sbjct: 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA 209
Query: 516 RK-ADLIGVLQSGRVIESGS 534
+K AD I L++G ++ G+
Sbjct: 210 KKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-27
Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 13/192 (6%)
Query: 1011 LVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-T 1069
L+G SG GK+T++ L+ F P SGS+M+D ++ + LR I +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRH-INMVFQSYALFPHMT 58
Query: 1070 IRQNIVYG-KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128
+ +N+ +G K K VL A + E + + QLSGGQ+QR+ALA
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLE-ALRLVQLEE-----FADRKPHQLSGGQQQRVALA 112
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLS-TIQKADNIV 1185
RA++ P ILLLDE SALD + +Q L+ + +G T V V H + +D I
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 1186 VIKNGKVVEQGT 1197
+++ GK+ + GT
Sbjct: 173 IMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 6e-27
Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 51/241 (21%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQS 1034
E++++ SY P + + ++ +++ G+ +A+VG +G+GKST I+GL++ P S
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK----PTS 53
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTL---FAGTIRQNIVYG-------------- 1077
GS+ V L K R I V Q ++ F ++R ++ G
Sbjct: 54 GSIRVF-----GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKA 108
Query: 1078 -KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136
K EA + + + A I +LSGGQ+QR+ LARA++++P
Sbjct: 109 DKAKVDEA-LERVGLSELADRQIG---------------ELSGGQQQRVLLARALVQDPD 152
Query: 1137 ILLLDEATSALDSASENLVQEALEKM-MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195
+LLLDE + +D ++ + E L ++ G T +VV H L + + + V++ N VV
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVAS 212
Query: 1196 G 1196
G
Sbjct: 213 G 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 53/236 (22%), Positives = 110/236 (46%), Gaps = 29/236 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++++N+ +Y + L+L + G+ L+G +G+GK+T + ++ P SG+
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVY----------GKEVATEAEI 1086
++ +I+ + + R + Q LF T+R+++ + + E +
Sbjct: 60 YINGYSIR-TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 1087 RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSA 1146
R + A++ LSGG K++++LA A++ P +LLLDE TS
Sbjct: 119 RVLGLTDKANKRAR---------------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163
Query: 1147 LDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
LD AS + + + ++ GR+ ++ H + + D I ++ +GK+ G+ L
Sbjct: 164 LDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 33/227 (14%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD--P---VKGNILLDGHKI--KK 383
K+++ T +G SG GKST++ R Y+ P +G ILLDG I K
Sbjct: 30 KNINLDIAKNQVT---AFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIGK------PGASMETVV-----KAAQAANV 432
+ LR+++G+V Q+P F SI +NI G A M+ V KAA V
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV 146
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
D K+ Q G LSGGQ+QR+ IAR + P++LLLDE SALD S +
Sbjct: 147 KD-----------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI 195
Query: 493 QEALDQASQGRTMIIIAHRL-STIRKADLIGVLQSGRVIESGSHDVL 538
+E + + Q T++I+ H + R +D + G +IE G+ D +
Sbjct: 196 EELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-27
Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 46/246 (18%)
Query: 328 IEFKDVDFSYPTRP-------DTP---TIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
IE + V S+ R D P + ++G SGSGKST++ L+ P KG IL+D
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 378 GHKIKKL---QLKWLRSQMGLVNQEPILFST-SIKENILI------GKPGASMETVVKAA 427
G I +L +L +R +MG++ Q+ LFS+ ++ EN+ P + + +V
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV--- 125
Query: 428 QAANVHDFIMKLNDGYETKVG-------QFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480
+MKL VG + +LSGG ++R+A+ARA+ DP++L LDE
Sbjct: 126 --------LMKLE-----LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 481 TSALDA-ESERIVQEALD-QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537
TS LD + I + + + G T+I++ H L ++ AD + VL G+VI G+ +
Sbjct: 173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232
Query: 538 LMQMNN 543
L+ ++
Sbjct: 233 LLASDD 238
|
Length = 263 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 20/239 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I KNV F Y S K ++ I G+ ++VG +GSGKSTI L+ +SG +
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEP-TLFAGTIRQ-NIVYGKE---VATEAEIRKAAVL 1092
+ + I N KLR I +V Q P F G+I + ++ +G E V + R+ +
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS-- 124
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
E + D + LSGGQKQR+A+A + NP +++LDEATS LD +
Sbjct: 125 ----EALKQV-DMLE-RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 1153 ----NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
+LV++ + + T + + H LS +AD+++V+ G V ++GT + +
Sbjct: 179 QNLLDLVRKVKSEHNI--TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
K ++L++E G ++G +GSGKS ++ I F P SG ++++ ++I NL + I
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
+ V Q LF T+ +NI YG + + + E + G D +
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPE 128
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM------VGRTCV 1169
LSGG++QR+A+ARA++ NP ILLLDE SALD +E L + + G T +
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDV----RTKEKLREELKKIRKEFGVTVL 184
Query: 1170 VVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
V H AD + ++ NGK+++ G +
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 44/216 (20%)
Query: 346 IGLVGSSGSGKSTV---ISLLERFYDPVKGNILLDGHKIK-------------KLQLKWL 389
I ++GSSGSGKST I+ LE+ P G+I ++G +I+ K QL+ L
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91
Query: 390 RSQMGLVNQEPILFS-TSIKENIL------IGKPGASMETVVKAAQAANVHDFIMKLNDG 442
R+++G+V Q L+S ++ EN++ +G A E + +A ++ K+ G
Sbjct: 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA--EAIERA------EKYLAKV--G 141
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL----DQ 498
K + LSGGQ+QR+AIARAL +P+++L DE TSALD E +V E L D
Sbjct: 142 IAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGEVLKVMQDL 198
Query: 499 ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
A +GRTM+++ H + R + + L G++ E G
Sbjct: 199 AEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234
|
Length = 256 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 67/202 (33%), Positives = 114/202 (56%), Gaps = 24/202 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
++G SG GK+T++ + R D V+G I G I +L + R ++G+V Q+P
Sbjct: 34 IIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93
Query: 401 ILFSTSIKENILIG------KPGASMETVVKAA--QAANVHDFIMKLNDGYETKVGQFGV 452
F SI +N+ G K ++ +V+ + +AA L D ++++ + G
Sbjct: 94 TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA--------LWDEVKSELNKPGT 145
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
+LSGGQ+QR+ IARAL +P+++LLDE TSALD + + +++ L++ S+ T++I+ H +
Sbjct: 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNI 205
Query: 513 S-TIRKADLIGVLQSGRVIESG 533
IR AD I + G +IE G
Sbjct: 206 GQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 58/229 (25%), Positives = 111/229 (48%), Gaps = 31/229 (13%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQ-SGSVMVDERNIKSYN--- 1048
G++ +++ G+ + +VG+SGSGKS I+GL+ + G ++ D +++ S +
Sbjct: 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81
Query: 1049 LRKLR-SCIALVSQEP-----------TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
LRK+R IA++ Q+P A +R + + + + L
Sbjct: 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVG-- 139
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
I E +Y +LSGG +QR+ +A A+ NP +L+ DE T+ALD + +
Sbjct: 140 --IPDPERRLKSY----PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL 193
Query: 1157 EALEKMM--VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSLL 1202
+ L+++ G +++ H L + + AD + V+ G++VE+G +
Sbjct: 194 DLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 22/233 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E+ + F Y +R ++ + G+ VAL+G +G+GKST+ L+ R Y Q G +
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVY-----GKEVATEAEIRKAAV 1091
V +++ L + +V Q+PTL ++RQN+ Y G A EA R A +
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA-EARARIAEL 116
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
LA + E ++ +L+GG ++R+ +ARA+L P +LLLDE T LD AS
Sbjct: 117 LAR----LGLAERA-----DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 1152 -ENLVQEALEKMMVGRTCVVVA-HRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
+ V+ A H + I+ D +VV+ G+V+ G + L
Sbjct: 168 RAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 2e-26
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 32/231 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ L V + Y P M F L + G+ VA++G SG+GKST++ LI F +P SGS+
Sbjct: 1 LALDKVRYEYEHLP--MEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-----KEVATEAEIRKAAV 1091
V++++ L + ++++ QE LFA T+RQNI G K A + E A
Sbjct: 56 KVNDQSHTG--LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDA- 112
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
+ + G Y QLSGGQ+QR+ALAR +++ ILLLDE SALD
Sbjct: 113 ---------AQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL- 162
Query: 1152 ENLVQE--ALEKMMVG---RTCVVVAHRLS-TIQKADNIVVIKNGKVVEQG 1196
L +E AL K + RT ++V H LS A I V+ GK+
Sbjct: 163 --LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--IL 402
I L G +G+GK+T+ +L G+ILL+G IK K R +G V Q+ L
Sbjct: 28 IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQL 84
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
F+ S++E +L+G QA ++K D Y K + + LSGGQKQR+
Sbjct: 85 FTDSVREELLLGLKELDA----GNEQAET----VLKDLDLYALK-ERHPLSLSGGQKQRL 135
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAH 510
AIA AL+ +L+ DE TS LD ++ V E + + A+QG+ +I+I H
Sbjct: 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-26
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 17/221 (7%)
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
+ ++ SY +P + + ++L I +G+ V ++G SG GK+T++ LI F P GS+ +
Sbjct: 6 VSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64
Query: 1040 DERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098
+ R I+ + +V Q L + N+ +G ++ I KA AH+
Sbjct: 65 NGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQM 116
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
++ G + + QLSGG +QR+ +ARA+ P +LLLDE ALD+ + +QE
Sbjct: 117 LA--LVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 1159 LEKM--MVGRTCVVVAHRL-STIQKADNIVVIK--NGKVVE 1194
L + G+ +++ H + + A +VV+ G+VVE
Sbjct: 175 LLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215
|
Length = 259 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-26
Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 27/351 (7%)
Query: 861 FRETMKGPKKESIKQSWFSGIGL---FSSQFLTTASITLTFWYAGR-IMNQGLVSPKQLF 916
F ++G + E + SWF L F+S L + + +T G ++ G ++P + F
Sbjct: 501 FESRIQGIRNEEL--SWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAF 558
Query: 917 QAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKG 976
+ L + ++ S + + +++ I +L + I ++P +P
Sbjct: 559 TSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPL-----QPGAP 613
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I +KN +FS+ S+ + + L+I G VA+VG +G GK+++I S
Sbjct: 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI------------S 661
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
M+ E + + +R +A V Q +F T+R+NI++G + +E R V A H
Sbjct: 662 AMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQH 721
Query: 1097 EFISSTEDGYD-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-ASENL 1154
+ G D T GERGV +SGGQKQR+++ARAV N I + D+ SALD+ + +
Sbjct: 722 DL--DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMG 1205
++ + G+T V+V ++L + D I+++ G + E+GT + L G
Sbjct: 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSG 830
|
Length = 1495 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-26
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 34/213 (15%)
Query: 345 TIGLVGSSGSGKST----VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG----LV 396
+G+VG SGSGKST ++ LL G ++LDG + L + +R G ++
Sbjct: 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMI 96
Query: 397 NQEPILFS---------TSIKENILIGKPGASMETVVKAAQAANVHDFIMK---LNDGYE 444
Q+P + I+E + + G+ E +A + +++ L D
Sbjct: 97 FQDP--MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE-------LLEQVGLPD--P 145
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--G 502
+ ++ QLSGG +QR+ IA AL PK+L+ DE T+ALD ++ + + L + G
Sbjct: 146 ERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205
Query: 503 RTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
++ I H L + + AD + V+ G ++E+G
Sbjct: 206 MAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-26
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 17/223 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE NV +YP G+ + I AG+ V LVG SG+GKST++ LI + P SG++
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1038 MVDERNIKSYNLRK---LRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEA--EIRKAAV 1091
V+ +++ R LR I +V Q+ L + +N+ + EV EIRK
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A +S +LSGG++QR+A+ARA++ +P IL+ DE T LD +
Sbjct: 119 AALELVGLSHKHRALPA-------ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 1152 ENLVQEALEKMMVGRTCVVVAHRLSTIQKA--DNIVVIKNGKV 1192
+ L+K+ T VVVA + ++ ++ GK+
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 36/230 (15%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNI--KSYNL 1049
K + L IE + AL+G SG GKST + + R D G V++D ++I ++
Sbjct: 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-----------ATEAEIRKAAVLANAHEF 1098
+LR + +V Q+P F +I N+ YG E ++ AA+ +
Sbjct: 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR 139
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
+ + G LSGGQ+QR+ +ARA+ P +LL+DE TSALD S ++E
Sbjct: 140 LKKSALG-----------LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKA----DNIVVIKNGKVVEQGTQSSLLSM 1204
++++ T V+V H + Q+A D NG++VE G L +
Sbjct: 189 IQELKKDYTIVIVTHNM---QQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-26
Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 14/235 (5%)
Query: 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
EP I +KN +FS+ S+ ++ + L + G VA+VG +G GK+++I
Sbjct: 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI-------- 660
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAV 1091
S M+ E +S +R +A V Q +F T+R NI++G E R V
Sbjct: 661 ----SAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV 716
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-A 1150
A H+ + G T GERGV +SGGQKQR+++ARAV N + + D+ SALD+
Sbjct: 717 TALQHD-LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775
Query: 1151 SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMG 1205
+ + ++ + G+T V+V ++L + + D I+++ G + E+GT L + G
Sbjct: 776 GRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNG 830
|
Length = 1622 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 8e-26
Identities = 72/205 (35%), Positives = 107/205 (52%), Gaps = 11/205 (5%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
+ L++ G VAL+G SGSGKST++ +I P SG + ++ ++ + R + I
Sbjct: 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK--I 74
Query: 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
V Q LF T+R NI +G E+ + + A + E + G D Y
Sbjct: 75 GFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-DRYPN---- 129
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAH 1173
QLSGGQ+QR+ALARA+ P +LLLDE ALD+ ++ L K+ V T V V H
Sbjct: 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189
Query: 1174 RLS-TIQKADNIVVIKNGKVVEQGT 1197
++ AD IVV+ NGK+ + G+
Sbjct: 190 DQEEAMEVADRIVVMSNGKIEQIGS 214
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 61/203 (30%), Positives = 105/203 (51%), Gaps = 21/203 (10%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV--NQEPILFS 404
GL+G +G+GK+T+ +L+ F P G++L DG I L +++G+ Q P LF
Sbjct: 30 GLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLGIGRTFQIPRLFP 88
Query: 405 T-SIKENILIG-----KPGASMETVVKA-----AQAANVHDFIMKLNDGYETKVGQFGVQ 453
++ EN+++ G + + +A + + + L D + G+
Sbjct: 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLER-VGLADLADRPAGE---- 143
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIIIAHRL 512
LS GQ++R+ IARAL DPK+LLLDE + L E+E + + + +G T++++ H +
Sbjct: 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM 203
Query: 513 STIRK-ADLIGVLQSGRVIESGS 534
+ AD + VL GRVI G+
Sbjct: 204 DVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 20/233 (8%)
Query: 978 IELKNVFFSY-PSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
I+++N+ Y P ++ + ++IE G+ V L+G +GSGKST+I + P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1036 SVMVDERNI--KSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKEV--ATEAEIRKA 1089
+++D +I K L +R + LV Q P LF TI ++I +G +E EI
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
A + Y+ Y + +LSGGQK+R+A+A V P IL+LDE T+ LD
Sbjct: 123 VKRAMNIVGLD-----YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1150 ASE----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
N ++E ++ T ++V+H + + K AD I+V+ GK QGT
Sbjct: 178 KGRDEILNKIKELHKEY--NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 7/193 (3%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPV---KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
L+G+SG GKST + R D + G + ++G +K + LR +G+V Q+P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMK--LNDGYETKVGQFGVQLSGGQKQR 461
SI ENI P K + A V D + K L + + K+ Q + LSGGQ+QR
Sbjct: 92 VKSIYENISYA-PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR 150
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST-IRKADL 520
+ IARAL PK+LLLDE TSALD S +++E L + S +MI++ H + R AD
Sbjct: 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADY 210
Query: 521 IGVLQSGRVIESG 533
G +IE G
Sbjct: 211 TAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 23/223 (10%)
Query: 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
E+E K+V S+ + D + L+G SG GKST++ ++ +P G IL+
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDF 435
DG + L + + + +V Q L+ ++ ENI G + V KA V +
Sbjct: 63 DGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFG---LKLRGVPKAEIDKRVKEV 117
Query: 436 IMKLN-DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
L + + +QLSGGQ+QR+A+ARAL+R PK+ LLDE S LDA+ +++
Sbjct: 118 AKLLGLEHLLNRKP---LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS 174
Query: 495 AL--DQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ G T I + H AD I V+ GR+ + G+
Sbjct: 175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 21/187 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWLRSQMGLVNQEPI 401
++G SGSGKST+++++ G + L+G + L K+ R ++G + Q
Sbjct: 27 YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFA 86
Query: 402 LFST-SIKENILIG-----KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
L +++EN+ +G K A + LN + K+ +LS
Sbjct: 87 LIENETVEENLDLGLKYKKLSKKEKREKKKEALEK------VGLNLKLKQKI----YELS 136
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLST 514
GG++QR+A+ARA+++ P ++L DE T +LD ++ V + L + +G+T+II+ H
Sbjct: 137 GGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV 196
Query: 515 IRKADLI 521
++AD +
Sbjct: 197 AKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 30/213 (14%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVK-----GNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
L+G SG GKST + L R D + G +LLDG I + + LR ++G+V Q+P
Sbjct: 34 LIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93
Query: 401 ILFSTSIKENILIG------KPGASMETVVKAA--QAA---NVHDFIMKLNDGYETKVGQ 449
F SI +N+ G K ++ +V+ + AA V D + K G
Sbjct: 94 NPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALG------- 146
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIA 509
LSGGQ+QR+ IARAL +P++LL+DE TSALD S ++E + + + T++I+
Sbjct: 147 ----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVT 202
Query: 510 HRL-STIRKADLIGVLQSGRVIESGSHDVLMQM 541
H + R +D +G ++E G L
Sbjct: 203 HNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 78/232 (33%), Positives = 110/232 (47%), Gaps = 32/232 (13%)
Query: 319 KTLAYLRGEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKG 372
K L G+ E K +D + T L+G SGSGKST + L R D V G
Sbjct: 24 KDLHVYYGKKEAIKGIDMQFEKNKIT---ALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80
Query: 373 NILLDGHKI--KKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM---------- 420
IL G I K++ + +R +G+V Q P F+ SI ENI A +
Sbjct: 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIV 140
Query: 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480
ET +K QAA L D + + + + LSGGQ+QR+ IARA+ P ILL+DE
Sbjct: 141 ETSLK--QAA--------LWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190
Query: 481 TSALDAESERIVQEALDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIE 531
SALD S ++E + + + T+II+ H + R +D G +IE
Sbjct: 191 ASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 15/195 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS- 404
L+G SG GK+T++ L+ F P G ILLDG I L + + V Q LF
Sbjct: 29 FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI--TNLPPHKRPVNTVFQNYALFPH 86
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQKQRI 462
++ ENI G ++ + KA V + + ++L +GY + QLSGGQ+QR+
Sbjct: 87 LTVFENIAFG---LRLKKLPKAEIKERVAEALDLVQL-EGYANRKPS---QLSGGQQQRV 139
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLS-TIRKAD 519
AIARAL+ +PK+LLLDE ALD + + +Q L Q G T + + H + +D
Sbjct: 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSD 199
Query: 520 LIGVLQSGRVIESGS 534
I V+ G++ + G+
Sbjct: 200 RIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKL----QLKWLRSQMGL 395
+G+VG SGSGKS + + V G IL DG + L K ++ +
Sbjct: 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92
Query: 396 VNQEPILFSTS----------IKENILIGKPGAS----METVVKAAQAANVHDFIMKLND 441
+ Q+P TS I E + + G S E ++ + + D +L
Sbjct: 93 IFQDP---MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLK- 148
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QA 499
+ +LSGG +QR+ IA AL +PK+L+ DE T+ALD + + + L Q
Sbjct: 149 -------SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201
Query: 500 SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+G +I+I H L + + AD + V+ +GR++E G
Sbjct: 202 EKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 30/239 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+L + Y + Q +F +TL G+T+ L+G SG+GKS+++ ++ P+SG++
Sbjct: 3 IQLNGINCFYGA--HQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1038 MVD------ERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIR--- 1087
+ + +R+LR + +V Q+ L+ T++QN++ EA R
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-------EAPCRVLG 112
Query: 1088 --KAAVLANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
K LA A + + + D + + LSGGQ+QR+A+ARA++ P +LL DE
Sbjct: 113 LSKDQALARAEKLLERLRLKPYADRF----PLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 1144 TSALDSASEN-LVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200
T+ALD +V E G T V+V H + +K A +V ++NG +VEQG S
Sbjct: 169 TAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051
+ I L+L + GK AL+G +G GKST++ R PQSG+V + ++ I + R+
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 1052 LRSCIALVSQEPTLFAG-TIRQNIVYGK--------EVATEAEIRKAAVLANAHEFISST 1102
L +AL+ Q G T+R+ + YG+ ++ E R +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR------ 127
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
+ R LSGGQ+QR LA + ++ ++LLDE T+ LD Q L ++
Sbjct: 128 ---INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH----QVELMRL 180
Query: 1163 M-----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
M G+T V V H L+ + D++VV+ NG V+ QGT
Sbjct: 181 MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 80/234 (34%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I L+NV +SYP + + + L I+ G+ + ++G++GSGKST+ + PQ G V
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1038 MVDERNIKSYNLRKL---RSCIALVSQEP-TLFAG-TIRQNIVYGKE--VATEAEIRKAA 1090
+V I + + KL R + +V Q P T F G T+ +++ +G E EIRK
Sbjct: 60 LV--SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV 117
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
A A E G + Y LSGGQ Q +ALA + P L+ DE TS LD
Sbjct: 118 DRALA-------EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 1151 SENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
S V E ++K+ G+T V + H L + AD I+V+ GK+V +G ++LS
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 19/226 (8%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041
N+FFS + K + LKIE G+ +A+ G +GSGK++++ LI +P G +
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFI 1099
R I+ SQ + GTI++NI++G + E R +V+ E I
Sbjct: 99 R-------------ISFSSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDI 142
Query: 1100 SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA- 1158
+ + +T GE G+ LSGGQ+ RI+LARAV K+ + LLD LD +E + E+
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 1159 LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ K+M +T ++V ++ ++KAD I+++ G GT S L S+
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 21/230 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--PQS- 1034
I+ ++V F Y D KG++++IE VA +G SG GKST + L R D P +
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1035 --GSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG---KEVATEAEIR 1087
G + +D RNI K + +LR + +V Q P F +I +N+ YG V A IR
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 1088 KAAV--LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
+ L A + D E LSGGQ+QR+ +ARA+ +P +LL+DE S
Sbjct: 121 QRVEETLKGA-----ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 1146 ALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
ALD S V+E + ++ T V+V H + + +D G++VE
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-25
Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 36/256 (14%)
Query: 978 IELKN---VFFSYPSRPDQMIFKGLT------------------LKIEAGKTVALVGQSG 1016
+E+KN +F +P R + I +GL+ L IE G+ ++G SG
Sbjct: 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSG 64
Query: 1017 SGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC----IALVSQEPTLFAG-TIR 1071
SGKST++ L+ R +P G V++D +I + +LR IA+V Q L T+
Sbjct: 65 SGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVL 124
Query: 1072 QNIVYGKEVA-TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130
N +G E+A AE R+ L + G + Y +LSGG +QR+ LARA
Sbjct: 125 DNTAFGMELAGINAEERREKALDALRQV------GLENYAHSYPDELSGGMRQRVGLARA 178
Query: 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMVG--RTCVVVAHRL-STIQKADNIVVI 1187
+ NP ILL+DEA SALD +Q+ L K+ RT V ++H L ++ D I ++
Sbjct: 179 LAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238
Query: 1188 KNGKVVEQGTQSSLLS 1203
+NG+VV+ GT +L+
Sbjct: 239 QNGEVVQVGTPDEILN 254
|
Length = 400 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 27/224 (12%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KK 383
D+ + T L+G SG GKST + L R D V+G ILLDG I
Sbjct: 23 HDISLEFEQNQVT---ALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVVKAA--QAANVHDF 435
+ + LR ++G+V Q+P F SI EN+ G K A + V+ + AA
Sbjct: 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA----- 134
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
L D + ++ + + LSGGQ+QR+ IARAL +P++LL+DE SALD + + ++E
Sbjct: 135 ---LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL 191
Query: 496 LDQASQGRTMIIIAHRL-STIRKADLIGVLQSGRVIESGSHDVL 538
+ + T+II+ H + R +D+ G++IE G + +
Sbjct: 192 IHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 6e-25
Identities = 71/209 (33%), Positives = 119/209 (56%), Gaps = 28/209 (13%)
Query: 341 PDTPTIGLVGSSGSGKSTVI---SLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMG 394
P G++G+SG+GKST+I +LLER P G++++DG + L +L R Q+G
Sbjct: 29 PAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSELTKARRQIG 85
Query: 395 LVNQE-PILFSTSIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
++ Q +L S ++ N+ L P ++ V A ++ L D +++
Sbjct: 86 MIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLA------LVGLGDKHDS--- 136
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMI 506
+ LSGGQKQR+AIARAL +PK+LL DEATSALD + + + E L + ++ G T++
Sbjct: 137 -YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195
Query: 507 IIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+I H + +++ D + V+ +G +IE G+
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+EL+NV + + L L I G+ V L+G SG GK+T + +I +P SG +
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEV--ATEAEIRK-----A 1089
+ R++ +L IA+V Q L+ T+ NI +G ++ + EI + A
Sbjct: 58 YIGGRDVT--DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
+L + + QLSGGQ+QR+AL RA+++ P + L+DE S LD+
Sbjct: 116 ELL------------QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163
Query: 1150 ASENLVQEALEKMM--VGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQG 1196
++ L+++ +G T + V H ++ + AD I V+ +G++ + G
Sbjct: 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 7e-25
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR----SQMGLVNQEPILF 403
++G SGSGKST++ LL R +P +G IL+DG I KL LR ++ +V Q L
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118
Query: 404 S-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN-DGYETKVGQFGVQLSGGQKQR 461
++ EN+ G ++ V KA + + + + +GY K + +LSGG +QR
Sbjct: 119 PHRTVLENVAFG---LEVQGVPKAEREERALEALELVGLEGYADK---YPNELSGGMQQR 172
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLS-TIRKA 518
+ +ARAL DP ILL+DEA SALD +Q+ L QA +T++ I H L +R
Sbjct: 173 VGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232
Query: 519 DLIGVLQSGRVIESGS 534
D I +++ G +++ G+
Sbjct: 233 DRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 37/230 (16%)
Query: 328 IEFKDVDFSYPTRP--------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
+ DV FSY P + ++G SG+GKST+++L+ F P G IL++G
Sbjct: 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV 61
Query: 380 KIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIG-KPG-----ASMETVVKAAQAANV 432
+ ++ QE LF+ ++ +NI +G PG E V AA +
Sbjct: 62 DH--TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
F+ +L +LSGGQ+QR+A+AR L+R+ ILLLDE SALD +
Sbjct: 120 AGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA---LR 165
Query: 493 QEALDQASQ-----GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
E L SQ T++++ H + AD + L +GR+ GS
Sbjct: 166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQ 215
|
Length = 231 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 32/226 (14%)
Query: 966 ASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGL 1025
A + I+++N+ F Y K + L I + A +G SG GKST++
Sbjct: 2 AMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 1026 IERFYD--PQ---SGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG- 1077
R Y+ P+ G +++D NI ++ LR+ + +V Q+PT F +I NI +G
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGV 118
Query: 1078 --KEVATEAE--------IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127
E + AE + KAA+ + +D + G LSGGQ+QR+ +
Sbjct: 119 RLFEKLSRAEMDERVEWALTKAALW-------NEVKDKL----HQSGYSLSGGQQQRLCI 167
Query: 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
AR + P +LLLDE SALD S ++E + ++ T V+V H
Sbjct: 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 7e-25
Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 19/237 (8%)
Query: 978 IELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
I+L N+ F ++ Q + ++L + AG+ ++G SG+GKST+I + P SG
Sbjct: 2 IKLSNITKVFHQGTKTIQAL-NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 1036 SVMVDERNI---KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAV 1091
SV+VD +++ + L K R I ++ Q L + T+ N+ E+ K +
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP---KDEI 117
Query: 1092 LANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
E ++ D +D+Y LSGGQKQR+A+ARA+ NP +LL DEATSALD
Sbjct: 118 KRKVTELLALVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 1150 ASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
A+ + E L+++ +G T +++ H + +++ D + VI NG+++EQGT S + S
Sbjct: 174 ATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 22/230 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++NV + ++L I +G+ VAL+G SGSGK+T++ LI P SG++
Sbjct: 3 IEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIR-KAAVLANA 1095
+ + +++ R+ + V Q LF T+ N+ +G V +E +A + A
Sbjct: 60 LFGGEDATDVPVQE-RN-VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 1096 HEFI-----SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
HE + D Y QLSGGQ+QR+ALARA+ P +LLLDE ALD+
Sbjct: 118 HELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 1151 SENLVQEALEKMM--VGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
++ L ++ + T V V H ++ AD +VV+ G++ + GT
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 9e-25
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 21/211 (9%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI----KKLQLK 387
+DF G+ G+SG+GKST++ + P G I+L+G + KK+ L
Sbjct: 16 KIDFDLNE----EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 388 WLRSQMGLVNQEPILFS-TSIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYET 445
+ ++GLV Q+ LF +++EN+ G K + E + + ++ + L
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG-LDHL------ 124
Query: 446 KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GR 503
+ ++ QLSGG+KQR+A+ARAL P++LLLDE SALD + L Q +
Sbjct: 125 -LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 504 TMIIIAHRLSTI-RKADLIGVLQSGRVIESG 533
+I + H LS AD I V++ GR+ G
Sbjct: 184 PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 22/205 (10%)
Query: 329 EFKDVDFSYPTRP---------DTPTI-GLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378
E +D+ SY P +VG +G+GKST++ + P G+I + G
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 379 HKIKKLQLKWLRSQMGLVNQEPIL---FSTSIKENILIGK-PGASMETVVKAAQAANVHD 434
++K R ++G V Q + F S+++ +L+G + + A A V D
Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV-D 114
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
++ E Q G +LSGGQ+QR+ +ARAL++DP +LLLDE + +D +++ + E
Sbjct: 115 EALERVGLSELADRQIG-ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 495 ALDQ-ASQGRTMIIIAHRLSTIRKA 518
L + +G T++++ H L + +
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEY 198
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 9e-25
Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 37/237 (15%)
Query: 328 IEFKDVDFSYPTRPDTPTIGL----------VGSSGSGKSTVISLLERFYDPVKGNILLD 377
IEFK+V + I L +G SGSGKST++ + + + G++++D
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61
Query: 378 GHKIK--KLQLKWLRSQMGLVNQEPILFS--TSIKENILIGKP----GASMETVVKAAQA 429
G K+ K+ + +R + G+V Q+ LF T++ EN++ G P GAS K
Sbjct: 62 GLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL-ENVMFG-PLRVRGAS-----KEEAE 114
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ + K+ G + + +LSGGQ+QR+AIARAL PK++L DE TSALD E
Sbjct: 115 KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE-- 170
Query: 490 RIVQEAL----DQASQGRTMIIIAHRLSTIRK--ADLIGVLQSGRVIESGSHDVLMQ 540
+ E L D A +G TM+I+ H + K + LI + GR+ E G VL++
Sbjct: 171 -LRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI-FIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 14/207 (6%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH---KIKKLQLKWL-RSQMGLVNQEPI 401
++G SGSGKST + +L R +P G I +DG K ++L+ + R ++G+V Q+
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81
Query: 402 LFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
LF +I +N +G + +A ++KL G E ++ +LSGG +Q
Sbjct: 82 LFPHMTILQNTSLGPELLGWPEQERKEKALE----LLKLV-GLEEYEHRYPDELSGGMQQ 136
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRL-STIRK 517
R+ +ARAL +P ILL+DEA SALD +Q+ L QA+ +T++ I H L IR
Sbjct: 137 RVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI 196
Query: 518 ADLIGVLQSGRVIESGSHD-VLMQMNN 543
D I ++++G +++ G+ D +L N
Sbjct: 197 GDRIVIMKAGEIVQVGTPDEILRNPAN 223
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 40/229 (17%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--------- 1045
+ KG++L+ AG ++++G SGSGKST + I P +GS+ V+ I+
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 1046 ----SYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIR-----KAAVLANA 1095
L++LR+ + +V Q L++ T+ +N++ EA + KA + A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-------EAPVHVLGVSKAEAIERA 133
Query: 1096 HEFISST--EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
++++ + D Y LSGGQ+QR+A+ARA+ P ++L DE TSALD
Sbjct: 134 EKYLAKVGIAEKADAY----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP---E 186
Query: 1154 LVQEALEKMMV----GRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
LV E L+ M GRT VVV H + + +++ + GK+ E+G
Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+N+ Y + G++L + G L+G +G+GK+T++ ++ P SG++
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG---KEVA-TEAEIRKAAVL 1092
+D +++ +KLR I + QE ++ T+R+ + Y K + E + R VL
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
+ D G LSGG ++R+ +A+A++ +P IL++DE T+ LD
Sbjct: 116 ELVN-----LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER 166
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ L ++ R ++ H + ++ + + V+ GK+V +G
Sbjct: 167 IRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 11/228 (4%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E+ ++ SY S+ + ++ + E G+ L+G++G+GK+T++ +I P SG V
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+D + +R I ++ E L+A T R+N+ Y + + A +A
Sbjct: 60 TIDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL- 117
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
S Y R + S G KQ++A+ARA++ +P IL+LDE TS LD +
Sbjct: 118 ----SKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 1157 EALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
+ ++++ GR + +H + ++ D ++V+ G+VV +G+ +L
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 37/244 (15%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E +++ +SYP KG+ K E G+ VAL+G +G+GKST+ P SG V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1038 MVDERNIKSYN---LRKLRSCIALVSQEP--TLFAGTIRQNIVYG--------KEVATEA 1084
++ IK Y+ L ++R + +V Q P LFA T+ +++ +G +EV
Sbjct: 60 LIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 1085 EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
+ AV G + + + LSGGQK+R+A+A + P I++LDE T
Sbjct: 119 KEALKAV-------------GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
Query: 1145 SALD----SASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199
S LD S L+ + ++ G T ++ H + + AD + V+ +GK++++GT
Sbjct: 166 SGLDPMGASQIMKLLYDLNKE---GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
Query: 1200 SLLS 1203
+ S
Sbjct: 223 EVFS 226
|
Length = 275 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-24
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 25/197 (12%)
Query: 987 YPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK- 1045
YP P+ + KGL E G+ +AL+G +G+GKST++ + PQSG+V++D +
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1046 -SYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYG------KEVATEAEIRKAAVLANAH 1096
L + R + LV Q+P LFA + Q++ +G E E +R+A A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA- 117
Query: 1097 EFISSTEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
G ER LSGG+K+R+A+A AV P +LLLDE T+ LD A +
Sbjct: 118 -------SGLR----ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 1156 QEALEKMMVGRTCVVVA 1172
L ++ VV++
Sbjct: 167 LAILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 27/209 (12%)
Query: 320 TLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
+ AY G DV + L G SG+GK+T++ LL P +G + + G
Sbjct: 8 SKAYPGGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGE 64
Query: 380 KIKKL---QLKWLRSQMGLVNQE-PILFSTSIKENI-----LIGKPGASMETVVKAAQAA 430
+ +L QL LR ++G+V Q+ +L ++ EN+ + GK ++ V AA
Sbjct: 65 DVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQ 124
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SE 489
G E K F QLSGG++QR+AIARA++ P +LL DE T LD + SE
Sbjct: 125 V----------GLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174
Query: 490 RIVQ--EALDQASQGRTMIIIAHRLSTIR 516
RI+ + L++ +G T+I+ H LS +
Sbjct: 175 RILDLLKRLNK--RGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 978 IELKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
I ++N+ ++ + S Q++F + L+I G+ V L G SGSGK+T++ LI Q G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60
Query: 1036 SVMV---DERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAV 1091
S+ V + L +LR I + Q L T RQN+ E+ ++A
Sbjct: 61 SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A A D D Y LSGGQKQR+A+ARA++ P ++L DE T+ALDS S
Sbjct: 121 RARAMLEAVGLGDHLDYYPH----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
Query: 1152 ENLVQEALEKMMVGRTC--VVVAHRLSTIQKADNIVVIKNGKVV 1193
V E ++K+ + C ++V H + AD IV +++GK++
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 38/215 (17%)
Query: 327 EIEFKDVDFSYPTRP---------DTPTI-GLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IE +++ SY RP + I L+G +G+GKST++ + P G I +
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPIL---FSTSIKENILIG---------KPGASMETVV 424
G ++K + K LR +G V Q+ + F ++K+ +L+G + + V
Sbjct: 64 FGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 425 KAA-QAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
A + + D + Q G +LSGGQKQR+ +ARAL ++P +LLLDE +
Sbjct: 121 DEALERVGMEDLRDR----------QIG-ELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 484 LDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK 517
+D ++ + + L + +G+T++++ H L +
Sbjct: 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA 204
|
Length = 254 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 45/226 (19%)
Query: 328 IEFKDVDFSYPTRPDTPTIG-------------LVGSSGSGKSTVISLLERFYDPVKGNI 374
IEF +V +YP T + LVG SG+GKST++ L+ + P G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 375 LLDGHKIKKL---QLKWLRSQMGLVNQEPILFST-SIKENI-----LIGKPGASMETVVK 425
++G + L + +LR ++G+V Q+ L ++ EN+ + G P + V
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 426 AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485
AA G K +LSGG++QR+AIARA++ P IL+ DE T LD
Sbjct: 119 AALELV----------GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
Query: 486 AESERIVQEALDQASQGRTMIIIA-----------HRLSTIRKADL 520
++ + L + ++ T +++A HR+ + + L
Sbjct: 169 PDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-24
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 43/208 (20%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--ERFYDPQSGSVMVDERNIKSYNLRKL 1052
+ K ++ K + G+ A++G SG+GKST++ + R SG V+++ R + R
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSF 80
Query: 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
R I V Q+ L T+R+ +++ AA L
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMF------------AAKL------------------- 109
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVV 1170
RG LSGG+++R+++A ++ NP +L LDE TS LDS+S V L ++ GRT +
Sbjct: 110 -RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 1171 VAHRLST--IQKADNIVVIKNGKVVEQG 1196
H+ S+ + D ++++ G+V+ G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-24
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 32/209 (15%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQEPI 401
T+GLVG SGSGKST+ L R P +G I DG I L +++ LR +M +V Q+P
Sbjct: 315 TLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP- 372
Query: 402 LFST---------SIKENILIGKPGAS----METVVKAAQAANVHDFIMKLNDGYETKVG 448
+ + I+E + + +P S + V++A + +
Sbjct: 373 -YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------N 421
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMI 506
++ + SGGQ+QRIAIARALI P+++LLDE TSALD + V + L Q G + +
Sbjct: 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYL 481
Query: 507 IIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
I+H L+ +R + V++ G+++E G
Sbjct: 482 FISHDLAVVRALCHRVIVMRDGKIVEQGP 510
|
Length = 534 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 30/239 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+L + Y + Q +F +TL G+T+ L+G SG+GKS+++ ++ P+SG++
Sbjct: 3 IQLNGINCFYGAH--QALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1038 MV-----DERNIKSYN-LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIR--- 1087
+ D S +R LR + +V Q+ L+ T+++N++ EA R
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-------EAPCRVLG 112
Query: 1088 --KAAVLANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
K LA A + + + D Y + LSGGQ+QR+A+ARA++ P +LL DE
Sbjct: 113 LSKDQALARAEKLLKRLRLKPYADRY----PLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 1144 TSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200
T+ALD + ++++ G T V+V H + +K A +V ++NG +VEQG S
Sbjct: 169 TAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 27/224 (12%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKI--KK 383
D+ P T +G SG GKST++ R D V +G I LDG I KK
Sbjct: 42 FDISMRIPKNRVT---AFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASM-ETVVKAAQAANVHDFI 436
+ + LR ++G+V Q P F SI EN++ G + E V ++ + A + D +
Sbjct: 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV 158
Query: 437 M-KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+L++ FG LSGGQ+QR+ IARA+ +P++LLLDE TSALD S ++E
Sbjct: 159 KDRLHEN------AFG--LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 496 LDQASQGRTMIIIAHRL-STIRKADLIGVLQSGRVIESGSHDVL 538
+ + T++I+ H + R +D + G+++E G D L
Sbjct: 211 ITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 33/232 (14%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I +NV +YP + + ++ I G+ V L G SG+GKST++ LI P G +
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1038 MVDERNI---KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRK--A 1089
+V+ ++ K + LR I +V Q+ L T+ +N+ V EIR+ +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1090 AVLA------NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
VL A S QLSGG++QR+A+ARA++ P +LL DE
Sbjct: 120 EVLDLVGLKHKARALPS---------------QLSGGEQQRVAIARAIVNQPAVLLADEP 164
Query: 1144 TSALDSASENLVQEALEKM-MVGRTCVVVAHRLSTIQKADN-IVVIKNGKVV 1193
T LD + E++ +G T ++ H L + + + ++ +++G++V
Sbjct: 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385
E + K+V R D I +G +GSGKS ++ + F P G ILL+G I
Sbjct: 11 KEFKLKNVSLEV-ERGDYFVI--LGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--N 65
Query: 386 LKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGY- 443
L + + V Q LF ++ +NI G V K V + L +
Sbjct: 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYG---LKKRKVDKKEIERKVLEIAEMLGIDHL 122
Query: 444 -ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA--S 500
K LSGG++QR+AIARAL+ +PKILLLDE SALD ++ ++E L +
Sbjct: 123 LNRKPET----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178
Query: 501 QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS-HDVLMQMNNGE 545
G T++ + H AD + ++ +G++I+ G +V + N
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 318 GKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPV-----KG 372
G Y + ++ K+++ +P R T ++G SG GKST++ L R D V +G
Sbjct: 9 GVNFFYHKHQV-LKNINMDFPERQIT---AIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 373 NILLDGHKI--KKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQ 428
+LLD I L + LR ++G+V Q+P F SI +N+ G G + ++ +
Sbjct: 65 AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVV 124
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
++ L D + + + G+ LSGGQ+QR+ IAR L +P+++L+DE SALD S
Sbjct: 125 EKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182
Query: 489 ERIVQEALDQASQGRTMIIIAHRL-STIRKADLIGVLQSGRVIESG 533
++E + + Q T+ I+ H + R +D G L +G ++E G
Sbjct: 183 TMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 43/194 (22%)
Query: 346 IGLVGSSGSGKSTVISLL--ERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
++G SG+GKST+++ L R V G +L++G + K + R +G V Q+ IL
Sbjct: 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDILH 94
Query: 404 ST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
T +++E + F KL LSGG+++R+
Sbjct: 95 PTLTVRETL----------------------MFAAKLR------------GLSGGERKRV 120
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLST--IRKAD 519
+IA L+ +P +L LDE TS LD+ S V L + A GRT+I H+ S+ D
Sbjct: 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180
Query: 520 LIGVLQSGRVIESG 533
+ +L GRVI G
Sbjct: 181 KLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 60/220 (27%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ELK V + I ++L + AG+ +A+ G SG GKST++ ++ P SG++
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+ + ++ + R ++ +Q P LF T+ N+++ ++ R AA+ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAAL-----D 115
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
++ D+ + +LSGG+KQRIAL R + P ILLLDE TSALD +++ ++E
Sbjct: 116 LLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174
Query: 1158 ALEKMMV--GRTCVVVAH-RLSTIQKADNIVVIKNGKVVE 1194
+ + + + + H + I+ AD ++ ++ G E
Sbjct: 175 MIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 5e-24
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIAHR 511
QLSGGQ+QR+A+ARAL+ +P +LLLDE TS LD S + E L + A +GRT+II+ H
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 512 LSTIRKA-DLIGVLQSGR 528
A D + VL+ G+
Sbjct: 140 PELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 5e-24
Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 32/230 (13%)
Query: 327 EIEFKDVDFSYP----------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPV-----K 371
+I+ +DV+F Y + + +G SG GKST + L R D + +
Sbjct: 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE 62
Query: 372 GNILLDGHKI--KKLQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASM-ET 422
G I +DG I K +Q+ LR +G+V Q P F SI EN+ G K A + +
Sbjct: 63 GEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR 122
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
V + + A L D + K+ + LSGGQ+QR+ IARA+ P +LL+DE S
Sbjct: 123 VEETLKGA-------ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 483 ALDAESERIVQEALDQASQGRTMIIIAHRL-STIRKADLIGVLQSGRVIE 531
ALD S V+E + + + T++I+ H + R +D G ++E
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 22/197 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
GL+G +G+GK+T++ +L P G I +DG + K Q + LR ++G + QE ++
Sbjct: 28 YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQKLRRRIGYLPQEFGVYPN 86
Query: 406 -SIKE-----NILIGKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+++E L G P V + + N+ D + K+G LSGG
Sbjct: 87 FTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR-------AKKKIGS----LSGGM 135
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERI-VQEALDQASQGRTMIIIAHRLSTIRK 517
++R+ IA+AL+ DP IL++DE T+ LD E ERI + L + + R +I+ H + +
Sbjct: 136 RRRVGIAQALVGDPSILIVDEPTAGLDPE-ERIRFRNLLSELGEDRIVILSTHIVEDVES 194
Query: 518 -ADLIGVLQSGRVIESG 533
+ + VL G+++ G
Sbjct: 195 LCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 19/218 (8%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSYNLRKLRS 1054
+ A+ G+SGSGK+T+I LI P G ++++ R + K L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 1055 CIALVSQEPTLFAG-TIRQNIVYGKEVATEAE--IRKAAVLANAHEFISSTEDGYDTYCG 1111
I V QE LF ++R N+ YG + A +E I V+ G G
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL---------GIGHLLG 126
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCV 1169
+LSGG+KQR+A+ RA+L +P +LL+DE +ALD + + LE++ G +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 1170 VVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206
V+H L + + AD +VV+++G+V G + + + +
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 24/237 (10%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE KNV + + + L I+ G+ V ++G SGSGKST++ I + + SG +
Sbjct: 2 IEFKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1038 MVDERNIK--SYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-KEV--ATEAEIRKAAV 1091
+VD + + R +R +V Q+ LF T +N+++G V A++ E K A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A ++ Y + +LSGGQ+QR+A+ARA+ P ++L DE TSALD
Sbjct: 119 ELLAKVGLAERAHHYPS-------ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP-- 169
Query: 1152 ENLVQEALEKMMV----GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
L E L+ M G T V+V H + +K A ++ I G++ E G L+
Sbjct: 170 -ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 32/237 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E +N+ R + ++L + G+ VA++G +G+GKST++ + P SG V
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
++ R + ++ +L A++ Q +L F T+ + + G+ + A++A A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL-------KNPMILLLDEATSALD- 1148
+ G QLSGG++QR+ LAR VL P LLLDE TSALD
Sbjct: 120 A-----QVDLAHLAGRDYPQLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 1149 -------SASENLVQEALEKMMVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
+ L E G +VV H L+ + AD IV++ G++V GT
Sbjct: 174 AHQHHVLRLARQLAHER------GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-24
Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSYNLRKLRSCI 1056
+ E GK A+VGQ+GSGKST+I I P +G+V VD+ I K +R +R I
Sbjct: 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRI 87
Query: 1057 ALVSQ--EPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
+V Q E LF T+ + I++G K + V AH + + G+ R
Sbjct: 88 GMVFQFPESQLFEDTVEREIIFGPKNFKMNLD----EVKNYAHRLL--MDLGF-----SR 136
Query: 1114 GV------QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--G 1165
V Q+SGGQ ++IA+ + NP I++LDE T+ LD S+ V L+ +
Sbjct: 137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206
+T ++V+H ++ + + AD ++V+K G +V Q + L
Sbjct: 197 KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 8e-24
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 1020 STIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSCIALVSQEPTLFAG-TIRQNIVYG 1077
ST++ LI P SG++++D + + RK LR I +V Q+P LF T+R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1078 -KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136
++ +A +A +F+ E LSGGQKQR+A+ARA+LK P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1137 ILLLDEATS 1145
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 8e-24
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 357 STVISLLERFYDPVKGNILLDGHKIKKL-QLKWLRSQMGLVNQEPILF-STSIKENILIG 414
ST++ L+ P G ILLDG L K LR ++G+V Q+P LF +++EN+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 415 -KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473
+ + +A + + DF+ + G LSGGQKQR+AIARAL++ PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 474 ILLLDEATS 482
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 25/219 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
L+G SGSGKST++ + R D + G+I+ +GH I + LR ++G+V Q+P
Sbjct: 36 LIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95
Query: 401 ILFSTSIKENILIG------KPGASMETVV-KAAQAANVHDFIM-KLNDGYETKVGQFGV 452
F SI EN++ G K ++ V K+ + A++ D + +L+D +
Sbjct: 96 NPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--------AL 147
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
LSGGQ+QR+ IAR L PKI+LLDE TSALD S ++E L TM+++ +
Sbjct: 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207
Query: 513 STI-RKADLIGVLQSGRVIESGS-HDVLMQMNNGEGGAY 549
R +D G G +IE + M + E Y
Sbjct: 208 QQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246
|
Length = 252 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 1e-23
Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 27/196 (13%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS- 404
+ ++G SG+GKST+++L+ F +P G+I ++ L + + ++ QE LF+
Sbjct: 27 VAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLFQENNLFAH 84
Query: 405 TSIKENILIG-KPGASM-----ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
++++NI +G PG + E VV AAQ + D++ +L + QLSGGQ
Sbjct: 85 LTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQ 133
Query: 459 KQRIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIAHRLS- 513
+QR+A+AR L+R ILLLDE SALD E +V++ + + RT++++ H LS
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSD 191
Query: 514 TIRKADLIGVLQSGRV 529
A I V+ G++
Sbjct: 192 ARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 67/239 (28%), Positives = 122/239 (51%), Gaps = 22/239 (9%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+EL+ + S+ G++L + G+ AL+G++G+GKST++ ++ Y P SG
Sbjct: 8 LLELRGISKSFGGVK---ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 1037 VMVDERNIKSYNLRK-LRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEA-EIRKAAVLA 1093
+++D + + + R L + IA V QE +L ++ +NI G+E I + A+
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 1094 NAHEFISSTEDGYD--TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A E ++ D T G+ LS Q+Q + +ARA+ + +L+LDE T+AL +
Sbjct: 125 RARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL-TVK 179
Query: 1152 ENLVQEALEKMMV-----GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204
E E L ++ G + ++HRL + + AD I V+++G+VV ++ S
Sbjct: 180 E---TERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235
|
Length = 500 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-23
Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 14/224 (6%)
Query: 978 IELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+ELK++ SYPS +Q+ + KG++L I AG+ VA+VG SGSGKST++ ++ P SG+
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1037 VMVDERNIKSYN---LRKLR-SCIALVSQEPTLFAG-TIRQNIVYGKEV-ATEAEIRKAA 1090
V +++ + + L +LR + Q L + T QN+ EV A A + +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV----EVPAVYAGLERKQ 120
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
L A E + G + + QLSGGQ+QR+++ARA++ ++L DE T ALDS
Sbjct: 121 RLLRAQELL--QRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178
Query: 1151 SENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVV 1193
S V L ++ G T ++V H +A+ ++ I++G++V
Sbjct: 179 SGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 1e-23
Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 14/222 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+++ N +FS+ + ++I G+ +VGQ G GKS+++ I G V
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 1038 MVDERNIKSYNLRKLRS----CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL- 1092
+N + RS +A +Q+P L T+ +NI +G + R AV
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQ---RYKAVTD 115
Query: 1093 -ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD-SA 1150
+ I G T GERG+ LSGGQ+QRI +ARA+ +N I+ LD+ SALD
Sbjct: 116 ACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175
Query: 1151 SENLVQEALEKMMVG--RTCVVVAHRLSTIQKADNIVVIKNG 1190
S++L+QE + K + RT V+V H+L + AD I+ +K+G
Sbjct: 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 34/226 (15%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKI--KK 383
DVD P + T +G SG GKST + L R D V G I LDG I +
Sbjct: 36 FDVDLDIPEKTVT---AFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG-------KPGASMETVV-----KAAQAAN 431
L + LR+++G+V Q+P F SI EN+ G + A ++ +V KA
Sbjct: 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
V D ++ + G LSGGQ+QR+ IARA+ P+++L+DE SALD +
Sbjct: 153 VKD-----------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAK 201
Query: 492 VQEALDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHD 536
V+E +D+ Q T++I+ H + R + G ++E G +
Sbjct: 202 VEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247
|
Length = 267 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 32/232 (13%)
Query: 328 IEFKDVDFSYP--TR---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IE +D+ F Y T+ P+ L+G +G+GKST++ L Y P +G + +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIG------KPGASMETVVKAAQ 428
G ++ KW+RS++GLV Q+P +FS+++ +++ G V +A +
Sbjct: 65 MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALK 124
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
A + DF K LS GQK+R+AIA L DP +++LDE + LD
Sbjct: 125 AVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 489 ERIVQEALDQAS-QGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHDVL 538
+ + E LD+ QG+T+I+ H + AD + VL+ GRV+ G +L
Sbjct: 174 QETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
Length = 274 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 2e-23
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
GL+G +G+GK+T + +L P G ++G+ I+ K R +G Q LF
Sbjct: 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQFDALFD 88
Query: 405 T-SIKENILI-----GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+++E++ G P + ++ + + ++ L D + LSGG
Sbjct: 89 ELTVREHLRFYARLKGLPKSEIK-----EEVELLLR-VLGLTDKANKRART----LSGGM 138
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI-RK 517
K+++++A ALI P +LLLDE TS LD S R + + + + +GR++I+ H +
Sbjct: 139 KRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198
Query: 518 ADLIGVLQSGRVIESGS 534
D I ++ G++ GS
Sbjct: 199 CDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 33/244 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----P 1032
IE++N F +Y ++ K +T+KI + A++G SG GK+T++ I R D
Sbjct: 4 IEIEN-FSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1033 QSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---------- 1080
G + ++I ++ + R + +V Q+PT F +I N+ +G +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1081 -ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
E ++KAA+ D + + G +LSGGQ+QR+ +ARA+ P ++L
Sbjct: 121 RIVEESLKKAALW-----------DEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 1140 LDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQ 1198
LDE TSALD + +++ LE++ T V+V H + I+ AD I + G+++E G
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229
Query: 1199 SSLL 1202
++
Sbjct: 230 REIV 233
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 32/222 (14%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD--P---VKGNILLDGHKI--KKL 384
DV+ + R T IG SG GKSTV+ L R ++ P V+G +LLDG + +
Sbjct: 22 DVNLNIEPRSVTAFIG---PSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 385 QLKWLRSQMGLVNQEPILFST-SIKENILIG-------KPGASMETVVKAAQAANVHDFI 436
+R +G+V Q P F T SI++N++ G E V K+ + AN
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGAN----- 133
Query: 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
L + + ++ + G LSGGQ+QR+ IARA+ +P +LL+DE SALD S +++ +
Sbjct: 134 --LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI 191
Query: 497 DQASQGRTMIIIAHRL-STIRKAD------LIGVLQSGRVIE 531
++ Q T++I+ H + R +D L + GR++E
Sbjct: 192 NELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 3e-23
Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 35/248 (14%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--- 1031
+ I K+V SY + G++L E + AL+G SG GKST + + R D
Sbjct: 2 ENIISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIE 58
Query: 1032 --PQSGSVMVDERNIKS--YNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA------ 1081
+G + + +NI +L +LR + +V Q+PT F ++ N+ YG ++A
Sbjct: 59 NIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKE 118
Query: 1082 -----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNP 1135
E +++AA+ T+D D R Q SGGQ+QRI +ARA+ P
Sbjct: 119 LIDQRVEESLKQAAIW-------KETKDNLD-----RNAQAFSGGQQQRICIARALAVRP 166
Query: 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
++LLDE TSALD S + ++E L ++ T ++V H L + +D + NG ++E
Sbjct: 167 KVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226
Query: 1195 QGTQSSLL 1202
G +
Sbjct: 227 AGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-23
Identities = 117/512 (22%), Positives = 218/512 (42%), Gaps = 40/512 (7%)
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
+ L FLGL L ++++LI +G+H + ++R + ++KI + ++ S
Sbjct: 47 SLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGS 104
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQ--VFFSASLAYTLSLLVTWRVAIVMIAVQPLNI 810
A + A L ++ + SF R+ L+Q + S AY L+ L + ++ +
Sbjct: 105 ARLLAGLTSDVRNI-SFAFSRLPELVQAIILTLGSAAY-LAYLSPKMFLLTVVWIVVTIW 162
Query: 811 GCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRIL--DLFRETMKGP 868
G F + + K M A++++ + + +T + + +L+ +
Sbjct: 163 GGFVLMARVYKHM-AAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEY 221
Query: 869 KKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL---FQAFFLLMST 925
+ I+ + F + + S + I L FW A + + L + T
Sbjct: 222 RHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA----LSLGWASTNVAATIVLVLLFLRT 277
Query: 926 GKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFF 985
A G + + + A I K E+ P P +EL+NV F
Sbjct: 278 PLLSA-VGILPT-LLTAQVAFNKI-----AKLELAPYKADFPRPQAFPDWKTLELRNVRF 330
Query: 986 SYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045
+Y + + L I+ G+ V L+G +GSGKST+ L+ Y PQSG +++D + +
Sbjct: 331 AYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388
Query: 1046 SYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRK-AAVLANAHEFISSTED 1104
+ L R + V + LF ++ + A+ I K L AH+ +S D
Sbjct: 389 AEQLEDYRKLFSAVFSDYHLF-----DQLLGPEGKASPQLIEKWLQRLELAHK--TSLND 441
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM- 1163
G + ++LS GQK+R+AL A+L+ IL+LDE + D A + L ++
Sbjct: 442 GRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK 496
Query: 1164 -VGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194
G+T ++H AD ++ ++NG++ E
Sbjct: 497 EQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 22/231 (9%)
Query: 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSG 1035
KN+ Y S+ Q++F + L I + A +G SG GKST + R D G
Sbjct: 9 KNLNLWYGSK--QILFD-INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65
Query: 1036 SVMVDERNIKSYNLRK--LRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA 1093
+ +D ++ S + LR+ + +V Q+P F +I N+ YG ++ A+ +K
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKK----- 120
Query: 1094 NAHEFI--SSTEDG-YDTYCG---ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
E + S T G ++ + +LSGGQ+QR+ +ARA+ P +LL+DE SAL
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
D + N+++ ++++ T +VV H + +K +D + ++G++VE T
Sbjct: 181 DPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-23
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 24/216 (11%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
DV P+ + L+G SGSGK+T++ L+ P G IL G + ++
Sbjct: 20 DVSLDIPS---GELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ--ER 74
Query: 392 QMGLVNQEPILFS-TSIKENILIG---KPGASMETVVKAAQAANVHDFI--MKLNDGYET 445
+G V Q LF ++ +N+ G KP + +A A VH+ + ++L D
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP--EAEIRAKVHELLKLVQL-DWLAD 131
Query: 446 KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA----ESERIVQEALDQASQ 501
+ + QLSGGQ+QR+A+ARAL +PK+LLLDE ALDA E R ++ D+
Sbjct: 132 R---YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-- 186
Query: 502 GRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHD 536
T + + H + AD + V+ GR+ + G+ D
Sbjct: 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-23
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQL 386
D+ + L+G SG+GKST +I+ LE P G I L+G + +
Sbjct: 18 LDDISLDIK---SGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSN 71
Query: 387 KWLRS-QMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDG 442
+R ++G V Q LF ++ +NI G E +A A V + + ++L +G
Sbjct: 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFG-LKVRKERPSEAEIRARVEELLRLVQL-EG 129
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QAS 500
++ QLSGGQ+QR+A+ARAL +PK+LLLDE ALDA+ + ++ L
Sbjct: 130 LA---DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 501 QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
G T + + H + AD + VL GR+ + G D
Sbjct: 187 LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 6e-23
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 25/212 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEPILF 403
+GL+G +G+GK+T+ +L+ FY P G ++ G I L +++G+ Q LF
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLGIARTFQITRLF 91
Query: 404 ST-SIKENILIG------------KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450
++ EN+ +G +P A E +A + +F + L + + G
Sbjct: 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF-VGLGELADRPAGN- 149
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA-ESERIVQEALDQASQ-GRTMIII 508
LS GQ++R+ IARAL PK+LLLDE + L+ E+E + + + + G T+++I
Sbjct: 150 ---LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI 206
Query: 509 AHRLSTIRK-ADLIGVLQSGRVIESGS-HDVL 538
H + + AD I VL G VI G+ +V
Sbjct: 207 EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 6e-23
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 30/236 (12%)
Query: 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
+EL+ + S+ + + L L I G+ + L+G SG GK+T++ LI F P
Sbjct: 11 LSPLVELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD 67
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG---KEVATEAEIRK- 1088
SG +M+D ++I ++ + V Q LF T+ +N+ +G ++ AEI
Sbjct: 68 SGRIMLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP-AAEITPR 124
Query: 1089 ---AAVLANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEAT 1144
A + EF +R QLSGGQ+QR+A+ARAV+ P +LLLDE+
Sbjct: 125 VMEALRMVQLEEF------------AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172
Query: 1145 SALDSASENLVQEALEKMM--VGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQGT 1197
SALD +Q L+ + +G T V V H + + +D IVV+++G++ + GT
Sbjct: 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 6e-23
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 33/222 (14%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KK 383
D+ S P T L+G SG GKST++ R D + G+IL +G I
Sbjct: 23 YDITISIPKNRVT---ALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVV-----KAAQAANV 432
+ LR ++G+V Q P F SI EN+ G K +++T+V AA V
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV 139
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
D +L+D + LSGGQ+QR+ IAR L +P+++L+DE SALD + +
Sbjct: 140 KD---RLHDS--------ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKI 188
Query: 493 QEALDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESG 533
++ ++ + T+II+ H + R +D G + G++IE
Sbjct: 189 EDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 7e-23
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 26/224 (11%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-----NILLDGHKI-KK 383
K ++ P R T L+G SG GKST++ L R D ++G + +DG I
Sbjct: 19 LKSINLPIPARQVT---ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVVKAA--QAANVHDF 435
+ + LR ++G+V Q+P F SI EN+ G K ++ VV+ + AA
Sbjct: 76 IDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA----- 130
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
L D + ++ LSGGQ+QR+ IAR + +P ++L+DE TSALD + ++E
Sbjct: 131 ---LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL 187
Query: 496 LDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538
+++ + T++I+ H + R+ +D G ++E V+
Sbjct: 188 MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (248), Expect = 8e-23
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 21/236 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++N+ F Y D G++ I G+ V+++GQ+GSGKST LI+ ++ G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKE---VATEAEIRKA--A 1090
+D + + N+ LR I +V Q P T+ ++ +G E + E I++ A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1091 VLA-NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
+LA N +F + +LSGGQKQR+A+A + P I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKT-----------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 1150 ASENLVQEALEKM--MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ + ++ T + + H L +D I+V+K G+++++ S L +
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 8e-23
Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 28/231 (12%)
Query: 315 DEIGKTLAYLRGEIE---FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371
+ +GK Y G+++ K V S + +VGSSGSGKST++ LL +P
Sbjct: 5 ENLGKR--YQEGKLDTRVLKGVSLSIG---KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS 59
Query: 372 GNILLDGHKIKKL---QLKWLRSQ-MGLVNQ-EPILFSTSIKENI----LIGKPGASMET 422
G +L +G + KL + LR++ +G + Q +L + EN+ LIGK ++
Sbjct: 60 GEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK-----KS 114
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
V +A + A + M G E ++ +LSGG++QR+AIARAL+ P ++L DE T
Sbjct: 115 VKEAKERA----YEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTG 170
Query: 483 ALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531
LD + +I+ + + + + +++ H L +K D + ++ G++
Sbjct: 171 NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-23
Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 15/199 (7%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
+++ + GK ++G +GSGKST++ + ++ G V + RS IA
Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS-IAY 725
Query: 1059 VSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118
V Q+ + T+R NI++ E A + A ++ ++ G +T GE+GV LS
Sbjct: 726 VPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784
Query: 1119 GGQKQRIALARAVLKNPMILLLDEATSALDS-ASENLVQEALEKMMVGRTCVVVAHRLST 1177
GGQK R++LARAV N + LLD+ SALD+ E +V+E + G+T V+ H++
Sbjct: 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV 844
Query: 1178 IQKADNIVVIKNGKVVEQG 1196
+ +AD +V + +G+V G
Sbjct: 845 VPRADYVVALGDGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 9e-23
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL-FSTS 406
L+G +G+GKST+ SLL R Y +G I + GH +++ L ++G+V Q+P L S
Sbjct: 32 LLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLS 90
Query: 407 IKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
+++N+ L G A + A + L + + KV + L+GG ++R
Sbjct: 91 VRQNLRYHAALHGLSRAEARARIAELLAR------LGLAERADDKVRE----LNGGHRRR 140
Query: 462 IAIARALIRDPKILLLDEATSALDAESER-IVQEALD-QASQGRTMIIIAHRLSTIRKAD 519
+ IARAL+ P +LLLDE T LD S I QG +++ H + I D
Sbjct: 141 VEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADD 200
Query: 520 LIGVLQSGRVIESGSHDVLMQMNNGE 545
+ VL GRV+ G+ L G
Sbjct: 201 RLVVLHRGRVLADGAAAELRGATGGA 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-22
Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 22/226 (9%)
Query: 326 GEIEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDPVK 371
G + F+ V Y R P +G+VG +GSGKST++ R +
Sbjct: 1307 GSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQA 429
G I ++G +I L+ LR Q ++ Q+P+LF ++++N+ P AS V A +
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALEL 1421
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI-RDPKILLLDEATSALDAES 488
+ + + ++G +++V + G S GQ+Q + +ARAL+ + +L+DEAT+ +D
Sbjct: 1422 VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481
Query: 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
+R +Q + A T+I IAHRL T+ + D I V+ G V E GS
Sbjct: 1482 DRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGS 1527
|
Length = 1560 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-22
Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 36/223 (16%)
Query: 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI--KKL 384
IE +D +F +GL+G +GSGKST+I L P G I++DG I KK+
Sbjct: 27 NIEIEDGEF----------VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV 76
Query: 385 QLKWLRSQMGLVNQEP--ILFSTSIKENILIGKP--GASMETV---VKAAQAANVHDFIM 437
+L +R ++GLV Q P LF +I+++I G G S E + VK A I+
Sbjct: 77 KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN------IV 130
Query: 438 KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497
L+ YE + +LSGGQK+R+AIA + +PKIL+LDE T+ LD + E L+
Sbjct: 131 GLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR---DEILN 185
Query: 498 QASQ-----GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ + T+I+++H + + K AD I V+ G+ G+
Sbjct: 186 KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 34/227 (14%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNIKSYN---L 1049
G++L + G+T+ LVG+SGSGKST ++ LI P G + D ++I + +
Sbjct: 304 DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-----PSQGEIRFDGQDIDGLSRKEM 358
Query: 1050 RKLRSCIALVSQEPTLFAG-----TIRQNIVYGKEV----ATEAEIRKAAVLANAHEFIS 1100
R LR + +V Q+P + T+ Q I G V + AE R V+ E
Sbjct: 359 RPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEPKLSAAE-RDQRVIEALEEV-- 413
Query: 1101 STEDGYDTYCGER-GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
G D R + SGGQ+QRIA+ARA++ P ++LLDE TSALD + + V + L
Sbjct: 414 ----GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLL 469
Query: 1160 EKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ G + + ++H L+ ++ ++V+++GK+VEQG ++ +
Sbjct: 470 RDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
P++PK IE + IELKNV + I L+ ++ G+ A+VG +G+GK+
Sbjct: 16 PKEPKKRHPIE-INEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKT 71
Query: 1021 TIIGLIERFYDPQSGSVMVD--ERNIKSYNLRKLRSCIALVS---QEPTLFAGTIRQNIV 1075
T++ L+ P S + R K + +LR I LVS E T+R ++
Sbjct: 72 TLLSLLTG-EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL 130
Query: 1076 YGK--------EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127
G E T ++ A L D + LS G+++R+ +
Sbjct: 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLG-AKHLADRP--FG-----SLSQGEQRRVLI 182
Query: 1128 ARAVLKNPMILLLDEATSALD-SASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADN 1183
ARA++K+P +L+LDE LD A E L+ E + V H I +
Sbjct: 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242
Query: 1184 IVVIKNGKVVEQGTQ 1198
+++K G+VV QG
Sbjct: 243 RLLLKEGEVVAQGKL 257
|
Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 19/222 (8%)
Query: 983 VFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER 1042
+FFS S + K ++ K+E G+ +A+ G +GSGKS+++ +I +P G + R
Sbjct: 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR 488
Query: 1043 NIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL--ANAHEFIS 1100
I+ Q + GTI+ NI++G + E R +V+ E I+
Sbjct: 489 -------------ISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIA 532
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA-L 1159
+ T GE G+ LSGGQ+ RI+LARAV K+ + LLD + LD +E + E+ L
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
Query: 1160 EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
K+M +T ++V +L ++KAD I+++ G GT S L
Sbjct: 593 CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 2e-22
Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 15/197 (7%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDG----HKIKKLQLKWLRSQMGLVNQ--EPI 401
+VG +GSGKST+I + P G + +D HK K ++ +R ++G+V Q E
Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQKQ 460
LF +++ I+ G M A H +M L G+ V Q Q+SGGQ +
Sbjct: 98 LFEDTVEREIIFGPKNFKMNLDEVKNYA---HRLLMDL--GFSRDVMSQSPFQMSGGQMR 152
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLSTI-RK 517
+IAI L +P I++LDE T+ LD +S+R V L Q + +T+I+++H ++ + R
Sbjct: 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY 212
Query: 518 ADLIGVLQSGRVIESGS 534
AD + V++ G ++ S
Sbjct: 213 ADEVIVMKEGSIVSQTS 229
|
Length = 286 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 2e-22
Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 14/216 (6%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ--SGSVMVDERNIKSYNLR 1050
+ L+L+IEAG+ +AL+G+SG GK+T++ I F +G + + +R++ +
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAP 75
Query: 1051 KLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY 1109
+ +AL+ Q LF + N+ +G + A +A+A + + G
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV-----GLGDA 130
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA-SENLVQE--ALEKMMVGR 1166
QLSGG +QRIA+ARA+ P +LLLDE SALD+ N+ +E AL + +
Sbjct: 131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1167 TCVVVAH-RLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
T + V H + + AD ++K+G++ G +L
Sbjct: 191 TILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 58/210 (27%), Positives = 106/210 (50%), Gaps = 24/210 (11%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055
++L ++ G+ AL+G++G+GKST++ ++ Y P SG + VD + ++ + R +R
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80
Query: 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGY------DT 1108
I +V Q L T+ +NI+ G E + I + A E + Y D
Sbjct: 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELS----ERYGLPVDPDA 136
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE--KMMV-- 1164
+ LS G++QR+ + +A+ + +L+LDE T+ L + E E E + +
Sbjct: 137 KVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQE--ADELFEILRRLAAE 189
Query: 1165 GRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193
G+T + + H+L + AD + V++ GKVV
Sbjct: 190 GKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 2e-22
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 20/225 (8%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM---VDERNIKSYNL 1049
+ ++L IE G+TV L+G+SG GKST+ L+ P G+V D +
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83
Query: 1050 RKLRSCIALVSQE------PTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISST 1102
R R + LV Q+ P + I + + + + + + A L + S
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED 143
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
D QLSGGQ QRI +ARA+ P +++LDEA S LD + ++ E L K+
Sbjct: 144 ADKLPR-------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 1163 M--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204
G + + H L +Q + V+ G++VE+ + LLS
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-22
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
V F T GL+G +G+GK+T + +L +P G +DG + K + R
Sbjct: 22 DGVSF---TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE-AR 77
Query: 391 SQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKV 447
++G V+ L+ + +EN+ A + + A + + + + + + +V
Sbjct: 78 RRLGFVSDSTGLYDRLTARENLEYF---AGLYGLKGDELTARLEELADRLGMEELLDRRV 134
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMI 506
G F S G +Q++AIARAL+ DP +LLLDE T+ LD + R ++E + Q + G+ ++
Sbjct: 135 GGF----STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 507 IIAHRLSTI-RKADLIGVLQSGRVIESG 533
H + + R D + VL GRV+ G
Sbjct: 191 FSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 3e-22
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G SG GK+T++ LL F P G+I+LDG + + LR + +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466
++EN+ G M V +A V + + + E + QLSGGQ+QR+A+AR
Sbjct: 59 VEENVAFG---LKMRKVPRAEIKPRVLEALRLVQ--LEEFADRKPHQLSGGQQQRVALAR 113
Query: 467 ALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLS-TIRKADLIGV 523
AL+ PKILLLDE SALD + +Q L Q G T + + H + +D I +
Sbjct: 114 ALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173
Query: 524 LQSGRVIESGS 534
++ G++ + G+
Sbjct: 174 MRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 3e-22
Identities = 63/210 (30%), Positives = 117/210 (55%), Gaps = 8/210 (3%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS---GSVMVDERNIKSYNL 1049
Q +F + ++IE K AL+G SG GKST + R D + G V ++ +++K+ ++
Sbjct: 16 QALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYD 1107
LR + +V Q+P +F +I +NI Y ++ + + + A++ + + + E+ D
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD 134
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRT 1167
+ + LSGGQ+QR+ +ARA+ P +LLLDE TSALD S +++E L+++ +
Sbjct: 135 KL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 1168 CVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
++V H + ++ AD G+++E G
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-22
Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 29/203 (14%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS--QMG--LVNQEPIL 402
L+G +G+GKST++ +L Y P G IL+DG K + R G V+QE L
Sbjct: 38 ALLGENGAGKSTLMKILSGVYPPDSGEILIDG---KPVAFSSPRDALAAGIATVHQELSL 94
Query: 403 FST-SIKENILIG----KPG-----ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
S+ ENI +G + +M + A + L+ +T VG
Sbjct: 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR------LGLDIDPDTLVGD--- 145
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALD-AESERIVQEALDQASQGRTMIIIAHR 511
LS Q+Q + IARAL D ++L+LDE T+AL E+ER+ +QG +I I+HR
Sbjct: 146 -LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204
Query: 512 LSTIRK-ADLIGVLQSGRVIESG 533
L + + AD I VL+ GRV+ +
Sbjct: 205 LDEVFEIADRITVLRDGRVVGTR 227
|
Length = 500 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 3e-22
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 34/225 (15%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNIKSYNLR 1050
I G++L + G+ VAL+G++G+GK+T I+GL+ P+SGS+ D R+I
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRFDGRDITGLPPH 70
Query: 1051 K-LRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRK--AAVLA---NAHEFISSTE 1103
+ R+ I V + +F T+ +N++ G A+ + V E
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ-- 128
Query: 1104 DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163
LSGG++Q +A+ARA++ P +LLLDE + L + +V+E E +
Sbjct: 129 ---------LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIR 176
Query: 1164 ----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
G T ++V + AD V++ G+VV +GT + LL+
Sbjct: 177 ELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 3e-22
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 62/189 (32%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTS 406
L+G +G+GKST++ +L Y P G IL+DG + + F++
Sbjct: 30 ALLGENGAGKSTLMKILSGLYKPDSGEILVDG--------------------KEVSFAS- 68
Query: 407 IKENILIGKPGASMETVVKAAQAAN---VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ A+ A V+ QLS G++Q +
Sbjct: 69 -----------------PRDARRAGIAMVY-------------------QLSVGERQMVE 92
Query: 464 IARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLI 521
IARAL R+ ++L+LDE T+AL AE ER+ + +QG +I I+HRL + + AD +
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRV 152
Query: 522 GVLQSGRVI 530
VL+ GRV+
Sbjct: 153 TVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-22
Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 18/239 (7%)
Query: 964 PKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTII 1023
P+ + +E++N+ S+ Q ++L I G+ AL+G SG GKST++
Sbjct: 6 PRPQAKTRKALTPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLL 62
Query: 1024 GLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVAT 1082
++ F P +G +M+D ++ ++ + I ++ Q LF T+ QNI +G +
Sbjct: 63 RMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK--- 117
Query: 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
+ ++ KA + + +E + + + QLSGGQ+QR+ALAR++ K P +LLLDE
Sbjct: 118 QDKLPKAEIASRVNEMLGLVH--MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
Query: 1143 ATSALDSASENLVQ----EALEKMMVGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQG 1196
ALD + +Q + LE+ VG TCV+V H + + A I ++ GK V+ G
Sbjct: 176 PMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
|
Length = 377 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-22
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 33/214 (15%)
Query: 348 LVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
+G SG GKST + R D VKG + +DG + + LR+++G+V Q+P
Sbjct: 36 FIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95
Query: 401 ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE---TKVGQF------- 450
F SI +N+ G + + K + KL++ E T VG +
Sbjct: 96 NPFPKSIYDNVAYG---PKLHGLAKNKK---------KLDEIVEKSLTSVGLWEELGDRL 143
Query: 451 ---GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMII 507
+LSGGQ+QR+ IARA+ P +LL+DE SALD + +++ + + + T+I+
Sbjct: 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIV 203
Query: 508 IAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
+ H + +K +D + QSGR++E + + +
Sbjct: 204 VTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 5e-22
Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 9/195 (4%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE-PILFST 405
GL+G +G+GK+T++ ++ P G + +DG + ++R ++G++ E +
Sbjct: 32 GLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYARL 90
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
+ +EN+ + A+ A + ++L + + +VG+F S G KQ++AIA
Sbjct: 91 TARENLKYFARLNGLSRKEIKARIAELSK-RLQLLEYLDRRVGEF----STGMKQKVAIA 145
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGV 523
RAL+ DP IL+LDE TS LD + R + + Q ++GR +I +H + + D + V
Sbjct: 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 524 LQSGRVIESGSHDVL 538
L G V+ GS + L
Sbjct: 206 LHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 5e-22
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--PQ---SGSVMVDERNIKSYNLR- 1050
++L + AL+G SGSGKST++ I R D P+ +GS++ + NI S
Sbjct: 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81
Query: 1051 -KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFI---SSTEDGY 1106
LR I +V Q+P F +I +N+VYG + I+ VL A E +S D
Sbjct: 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKG---IKDKQVLDEAVEKSLKGASIWDEV 138
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166
+ + LSGGQ+QR+ +AR + +P I+LLDE TSALD S ++E L +
Sbjct: 139 KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY 198
Query: 1167 TCVVVAHRLSTIQKADNI 1184
T ++V ++Q+A I
Sbjct: 199 TMLLVTR---SMQQASRI 213
|
Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-22
Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKI--KKLQLKWLRSQM 393
P L+G SG GKST I L R D + +G+I LDG I + + LR ++
Sbjct: 27 PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV 86
Query: 394 GLVNQEPILFSTSIKENILIG------KPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447
G+V Q+P F SI +N+ G +E V+ + A L D + K+
Sbjct: 87 GMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKA------AALWDEVKDKL 140
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMII 507
+ + LSGGQ+QR+ IAR + P+++L+DE SALD S +++ + + + T++I
Sbjct: 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200
Query: 508 IAHRL-STIRKADLIGVLQSGRVIESGSHD 536
+ H + R + +G +IESG D
Sbjct: 201 VTHNMQQATRVSKYTSFFLNGEIIESGLTD 230
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 5e-22
Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 54/273 (19%)
Query: 957 SEIDPEDPKASEDIE----EPT--------KGFIELK--NVFFSYPSRPDQMIFKGLTLK 1002
+ + D + +P+ + IE + NVF+ D+ +++
Sbjct: 7 TSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG-----DEQALDDVSMD 61
Query: 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKSYNLR--KLRSC 1055
I + A++G SG GKST + I R D G + +N+ ++ LR
Sbjct: 62 IPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRR 121
Query: 1056 IALVSQEPTLFAGTIRQNIVYGKEVA---------TEAEIRKAAVLANAHEFISSTEDGY 1106
I +V Q+P F +I N+ YG ++ E +R+AA+ +D
Sbjct: 122 IGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALW-------DEVKDQL 174
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166
D G+ LSGGQ+QR+ +ARA+ +P ++L+DE SALD + + +++ +E++
Sbjct: 175 D----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 1167 TCVVVAHRLSTIQKADNI-----VVIKNGKVVE 1194
T V+V H + Q+A I V + G++VE
Sbjct: 231 TVVIVTHNM---QQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 31/232 (13%)
Query: 328 IEFKDVDFSYP----------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
I+ ++ Y P T+ L+G SG+GKS+++ +L P G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 378 GHK------IKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKP----GASMETVVKA 426
G+ ++ LR +G+V Q+ L+ ++++N LI P G S + +A
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN-LIEAPCRVLGLSKD---QA 118
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
A ++L +F + LSGGQ+QR+AIARAL+ +P++LL DE T+ALD
Sbjct: 119 LARAEKLLERLRLKP----YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 487 E-SERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
E + +IV + A G T +I+ H + RK A + +++G ++E G
Sbjct: 175 EITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 6e-22
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 36/253 (14%)
Query: 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
+ K S++I I L+NV SY K + I GK AL+G SG GKS
Sbjct: 3 KTNKKISKNII------ISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKS 53
Query: 1021 TIIGLIERFYD-----PQSGSVMVDERNIKSYNLR--KLRSCIALVSQEPTLFAGTIRQN 1073
T++ + R D G V+ D ++ + ++R I +V Q+P F +I +N
Sbjct: 54 TVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYEN 113
Query: 1074 IVYGKEV---------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124
I +G + E +RKAAV + ++ E G LSGGQ+QR
Sbjct: 114 IAFGARINGYTGDMDELVERSLRKAAVWDECKDKLN-----------ESGYSLSGGQQQR 162
Query: 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNI 1184
+ +AR + P ++L+DE SALD S ++E + ++ T V+V H + + ++
Sbjct: 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDM 222
Query: 1185 VVIKNGKVVEQGT 1197
N + VE G+
Sbjct: 223 TAFFNAEEVEGGS 235
|
Length = 269 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 7e-22
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 20/211 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRK 1051
+ KG++L I G+ VA+VG SGSGKST++ L+ +P SG V+ + +++ + K
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1052 LRS-CIALVSQEPTLFAG-TIRQNI----VYGKEVATEAEIRKAAVLANAHEFISSTEDG 1105
LR+ + + Q L T +N+ + GK+ EA+ R +L E
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG-----LEHR 134
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV- 1164
+ E LSGG++QR+A+ARA++ P ++L DE T LD+ + ++ + + ++
Sbjct: 135 INHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE 190
Query: 1165 -GRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194
+ +VV H L +K D ++ +K+G++
Sbjct: 191 LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 7e-22
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 24/207 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNI----LLDGHKI-----------KKLQ-LKWLRS 391
++G+SGSGKST+++ G I + G K KK++ K LR
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 392 QMGLVNQEP--ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449
++ +V Q P LF +I+++I+ G P A +A + A + M L+D Y +
Sbjct: 117 RVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLAKFYLNKMGLDDSY-LERSP 174
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMIII 508
FG LSGGQK+R+AIA L P+IL+ DE T+ LD + E ++Q LD + +T+ +I
Sbjct: 175 FG--LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVI 232
Query: 509 AHRLSTIRK-ADLIGVLQSGRVIESGS 534
H + + + AD + V+ G+++++G+
Sbjct: 233 THTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 31/229 (13%)
Query: 331 KDVDFSYPTRPDTPTI-GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK-- 387
DV S I L+G +G+GKST++ +L Y P G I +DG K++++K
Sbjct: 21 DDVSLSVKKG----EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRIKSP 73
Query: 388 --WLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFI----MKLN 440
+R +G+V+Q +L T ++ ENI++G + + + A + + + ++
Sbjct: 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD 133
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQA 499
+ KV LS G++QR+ I +AL R ++L+LDE T+ L E++ + + A
Sbjct: 134 --PDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187
Query: 500 SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG------SHDVLMQM 541
++G+T+I I H+L + AD + VL+ G+V+ + + + L ++
Sbjct: 188 AEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAEL 236
|
Length = 501 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 8e-22
Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 24/207 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
L+G SG GKST + L R D ++G +LLDG I K + + LR ++G+V Q+P
Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94
Query: 401 ILFSTSIKENILIG------KPGASMETVVKAA--QAANVHDFIMKLNDGYETKVGQFGV 452
F SI +N+ G K ++ +V+ A +AA L D + + + +
Sbjct: 95 NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA--------LWDEVKDDLKKSAL 146
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
+LSGGQ+QR+ IAR + P ++L+DE TSALD S +++ + + + T++I+ H +
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
Query: 513 STI-RKADLIGVLQSGRVIESGSHDVL 538
R +D G +IE + +
Sbjct: 207 QQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 8e-22
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 23/213 (10%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
K ++L ++ G+ V L+G SG GK+T++ +I +G++ R+I L +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKR 76
Query: 1055 CIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEF-----ISSTEDGYDT 1108
+V Q LF T+ NI YG + +A V E + +E Y
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG---LKNRGMGRAEVAERVAELLDLVGLPGSERKYPG 133
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-ASENLVQE--ALEKMMVG 1165
QLSGGQ+QR+ALARA+ +P +LLLDE SALD+ E+L E L++ +G
Sbjct: 134 -------QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLG 185
Query: 1166 RTCVVVAH-RLSTIQKADNIVVIKNGKVVEQGT 1197
T ++V H + + AD IVV+ +G + + GT
Sbjct: 186 VTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 9e-22
Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 5/229 (2%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G + +K++ Y + + + ++ I G+ V L+G++GSGKST++ R + + G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI-VYGKEVATEAEIRKAAVLAN 1094
+ +D + S L+K R ++ Q+ +F+GT R+N+ YGK ++ EI K A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
I D + G LS G KQ + LAR+VL ILLLDE ++ LD + +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+++ L++ T ++ HR+ + + +VI+ KV + + LL+
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-21
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK 383
L ++ +DV S P T +G ++GSGKST++ L ++ +G +
Sbjct: 670 LEPKVLLRDVSVSVPRGKLTVVLG---ATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQ-AANVHDFIMKLN 440
W + V Q+ + + +++ NIL A + V+ +Q A++ +L
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL----AQLG 769
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SERIVQEALDQA 499
G ET++G+ GV LSGGQK R+++ARA+ + + LLD+ SALDA ER+V+E A
Sbjct: 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829
Query: 500 SQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
G+T ++ H++ + +AD + L GRV SGS M+
Sbjct: 830 LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870
|
Length = 1560 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKW 388
K ++F+ + L+G++G+GKST++ L P G +L+DG + + L
Sbjct: 9 KGLNFAAE---RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE 65
Query: 389 LRSQMGLVNQEP--ILFSTSIKENIL-----IGKPGASMETVVKAAQAANVHDFIMKLN- 440
R ++GLV Q+P LF+ + +++ +G A +E V+ A A +
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTA--------VGA 117
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-A 499
G + LSGG+K+R+AIA A+ P +LLLDE T+ LD + L +
Sbjct: 118 SGLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 500 SQGRTMIIIAH 510
++G T++I H
Sbjct: 175 AEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 1e-21
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL--VNQEPIL 402
+ L+G +G+GK+T++ + P G+I DG I L R++ G+ V + +
Sbjct: 28 IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HERARAGIGYVPEGRRI 86
Query: 403 FST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE------TKVGQFGVQLS 455
F +++EN+L+G A A +L YE + Q LS
Sbjct: 87 FPELTVEENLLLG------------AYARRRAKRKARLERVYELFPRLKERRKQLAGTLS 134
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE---ALDQ-ASQGRTMIIIAHR 511
GG++Q +AIARAL+ PK+LLLDE + L + +IV+E A+ + +G T++++
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVTILLVEQN 191
Query: 512 LSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
+ AD VL+ GRV+ G+ L+
Sbjct: 192 ARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-21
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 978 IELK--NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD---- 1031
IE++ N +F D I K + L I AL+G SG GKST I + R D
Sbjct: 4 IEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPG 58
Query: 1032 -PQSGSVMVDERNIKSYNLR--KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE----- 1083
G + +D +I + +LR + +V Q+P F +I N+ YG + E
Sbjct: 59 FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDF 118
Query: 1084 -AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
E + ++ A A +D D + + LSGGQ+QR+ +AR + +P ++L+DE
Sbjct: 119 IEERVEESLKAAA--LWDEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDE 172
Query: 1143 ATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV-VIKNGKVVEQG 1196
SALD S +++ + K+ T V+V H + + NG+++E G
Sbjct: 173 PCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESG 227
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-21
Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 35/228 (15%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVK-----GNILLDGHKIKK--LQLKWLRSQM 393
P+ L+G SG GKST + L R D +K G++ LDG I + + L LR ++
Sbjct: 69 PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRV 128
Query: 394 GLVNQEPILFSTSIKENI-----------------LIGK--PGASMETVVKAAQAANVHD 434
G+V Q P F SI+ENI L+G+ A E V ++ + A + D
Sbjct: 129 GMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD 188
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
++ND ++ + LSGGQ+QR+ IAR L DP+++L+DE SALD + +++
Sbjct: 189 ---EVND----RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241
Query: 495 ALDQASQGRTMIIIAHRL-STIRKADLIGV-LQSGRVIESGSHDVLMQ 540
+++ ++ T++++ H + R +D V L G ++E D + +
Sbjct: 242 LIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289
|
Length = 305 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 32/238 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L ++ + Y P M F L +E G+ VA++G SG+GKST++ LI F P SGS+
Sbjct: 2 LKLTDITWLYHHLP--MRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL 56
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA---TEAEIRKAAVLA 1093
++ R ++++ QE LF+ T+ QNI G A+ K +A
Sbjct: 57 TLN--GQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIA 114
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
+ G + QLSGGQ+QR+ALAR +++ ILLLDE SALD A
Sbjct: 115 R--------QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPA--- 163
Query: 1154 LVQEALEKMMVGRTC-------VVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
L QE L +V + C ++V+H L + A +V+ +G++ G LLS
Sbjct: 164 LRQEMLT--LVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-21
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
DV+ PT + L+G SGSGKST++ ++ P G I L+G ++ +
Sbjct: 17 DDVNLEVPT---GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 391 SQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFI-----MKLNDGYE 444
++G V Q LF ++++NI G + KA A V + + L D Y
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFG---LEIRKHPKAKIKARVEELLELVQLEGLGDRYP 128
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--G 502
QLSGGQ+QR+A+ARAL +P++LLLDE ALDA+ + ++ L +
Sbjct: 129 N-------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 503 RTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHD 536
T + + H + AD I V+ +G++ + GS D
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 30/228 (13%)
Query: 328 IEFKDVDFSYP-----------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
+E +D+ +SYP + L+G +G+GKST+ P G +L+
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 377 DGHKIK--KLQLKWLRSQMGLVNQEP--ILFSTSIKENILIGKP---GASMETVVKAAQA 429
G IK K L +R +G+V Q P LF+ +++E++ G P G S E V K
Sbjct: 62 KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEK---- 116
Query: 430 ANVHDFIMKLN-DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE- 487
V + + + +G+E K LSGGQK+R+AIA L P+I++LDE TS LD
Sbjct: 117 -RVKEALKAVGMEGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 488 SERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ +I++ D +G T+II H + + AD + V+ G++I+ G+
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 54/263 (20%)
Query: 969 DIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028
+ + K +E +V++ D KG+++ I AL+G SG GKST + + R
Sbjct: 39 EFDGDAKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93
Query: 1029 FYDPQS-----GSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG---- 1077
D GSV +D ++I NL +LR + +V Q P F +IR+NI YG
Sbjct: 94 MNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH 153
Query: 1078 -------------------KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118
++ E +R+AA+ ++ + + + LS
Sbjct: 154 GDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-----------DDNALGLS 202
Query: 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178
GGQ+QR+ +AR + +P ++L+DE SALD + + +++ +E++ T VVV H +
Sbjct: 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNM--- 259
Query: 1179 QKADNI-----VVIKNGKVVEQG 1196
Q+A I V + G++VE
Sbjct: 260 QQAARISDQTAVFLTGGELVEYD 282
|
Length = 305 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-21
Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--------- 1045
+ KG++L+ AG ++++G SGSGKST + I P GS++V+ + I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1046 ----SYNLRKLRSCIALVSQEPTLFAG-TIRQNI------VYGKEVATEAEIRKAAVLAN 1094
LR LR+ + +V Q L++ T+ +N+ V G ++ E R+ AV
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG---LSKQEARERAVKYL 136
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A + E Y V LSGGQ+QR+++ARA+ P +LL DE TSALD L
Sbjct: 137 AK--VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP---EL 187
Query: 1155 VQEALEKMMV----GRTCVVVAHRLSTIQKADN-IVVIKNGKVVEQGTQSSLLS 1203
V E L M G+T VVV H + + + ++ + GK+ E+G L
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-21
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 22/199 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
L+G SG GKST + L R D + GN+ L G I + LR Q+G+V Q+P
Sbjct: 36 LIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95
Query: 401 ILFSTSIKENILIGKPGASM-------ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
F SI EN++ G A + E V + + A + D + + + + +
Sbjct: 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALS 148
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGGQ+QR+ IAR L P ++LLDE TSALD S ++ L + T+I++ H +
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMH 208
Query: 514 TI-RKADLIGVLQSGRVIE 531
R +D +G +IE
Sbjct: 209 QASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 2e-21
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 18/215 (8%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KK 383
KDV +P T ++G SG GKSTV+ + R +D V G ILLD I +
Sbjct: 21 KDVSMDFPENSVT---AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77
Query: 384 LQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMK---L 439
+ +R ++G+V Q+P F + SI +N++ G + V ++A + + +K L
Sbjct: 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVI---AGYKLNGRVNRSEADEIVESSLKRVAL 134
Query: 440 NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499
D + ++ ++LSGGQ+QR+ IAR + P+++L+DE SALD S ++E +++
Sbjct: 135 WDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194
Query: 500 SQGRTMIIIAHRL-STIRKADLIGVLQSGRVIESG 533
+ T+II+ H + R +D G ++E G
Sbjct: 195 KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 3e-21
Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 39/232 (16%)
Query: 328 IEFKDVDFSYPTRPDTPTI-------------GLVGSSGSGKSTVISLLERFYDPVKGNI 374
IE K++ F Y + T+ ++G +GSGKST + L++ + G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 375 LLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIG-----KPGASM-ETVVKA 426
++DG + + + +R ++G+V Q P ++++++ G P M E V +A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
+ + DF + E +LSGGQKQR+AIA A+ PKI++LDEATS LD
Sbjct: 125 LELVGMQDFKER-----EP------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 487 ESE----RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
E + ++ D T+I I H L + +D + V+++G+V ES S
Sbjct: 174 EGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQV-ESTS 222
|
Length = 279 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-21
Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 39/241 (16%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----P 1032
+E++N+ Y D+ ++++I + A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1033 QSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---------- 1080
G + +D +NI K ++ +LR + +V Q P F +I +N+VYG +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 1081 -ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
A E +R AA+ E +D E LSGGQ+QR+ +ARA+ P +LL
Sbjct: 143 EAVERSLRGAALW---DE----VKDRLH----ENAFGLSGGQQQRLVIARAIAIEPEVLL 191
Query: 1140 LDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKA----DNIVVIKNGKVVEQ 1195
LDE TSALD S ++E + ++ T V+V H + Q+A D + GK+VE
Sbjct: 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTHNM---QQAARVSDYTAFMYMGKLVEY 248
Query: 1196 G 1196
G
Sbjct: 249 G 249
|
Length = 272 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 12/197 (6%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVK-----GNILLDGHKI--KKLQLKWLRSQMGLVNQE 399
L+G SG GKST + L R D ++ G I +G I K+ L LR ++G+V Q+
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQ 93
Query: 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK--VGQFGVQLSGG 457
P F S+ +N+ G A ++ K V + + + ETK + + SGG
Sbjct: 94 PTPFPFSVYDNVAYGLKIAGVKD--KELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGG 151
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI-R 516
Q+QRI IARAL PK++LLDE TSALD S ++E L + T I++ H L R
Sbjct: 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR 211
Query: 517 KADLIGVLQSGRVIESG 533
+D L +G +IE+G
Sbjct: 212 ISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 3e-21
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 37/216 (17%)
Query: 346 IGLVGSSGSGKSTVISLL---ERFYDPVKGNILLDGHKIKKLQ-------------LKWL 389
+ L+G SGSGKST++ +L E + G I ++G ++ + L+ +
Sbjct: 29 VALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85
Query: 390 RSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND--GYETK 446
R+++G+V Q LF ++ +N+ A + +V A M+L D G K
Sbjct: 86 RNKIGMVFQSFNLFPHKTVLDNVTE----APV--LVLGMARAEAEKRAMELLDMVGLADK 139
Query: 447 VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD-----QASQ 501
QLSGGQ+QR+AIARAL PK++L DE TSALD E +V E L+ +
Sbjct: 140 ADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGEVLNVIRRLASEH 196
Query: 502 GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
TM+++ H + R+ AD + GR++E G D
Sbjct: 197 DLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-21
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS- 1036
+E K+V F+YP + ++ I G AL+G +GSGKSTI LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1037 --VMVDERNIKSYNLRKLRSCIALVSQEP-TLFAG-TIRQNIVYGKEVATEAEIRKAAVL 1092
+ VD + + + +R + +V Q P F G T+ ++ +G E + + ++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE---NRAVPRPEMI 121
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
+ ++ + G Y LSGGQKQR+A+A + P I++LDE+TS LD A +
Sbjct: 122 KIVRDVLA--DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179
Query: 1153 NLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
+ + + K+ T + + H + AD ++V+ +GK++ QG+
Sbjct: 180 EQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERF---YDP---VKGNILLDGHKIKKLQLKWLRSQMG 394
P+ G++G SGSGKST++ +L R YD V G +L G I ++ LR ++G
Sbjct: 34 PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG 93
Query: 395 LVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET--KVGQFG 451
+V Q+P F SI +NI P S K V + + K+ E ++
Sbjct: 94 MVFQQPNPFPHLSIYDNI--AYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA 151
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
QLSGGQ+QR+ IARAL PK+LL+DE TS +D + + +++ + + ++I++H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
Query: 512 LSTI-RKADLIGVLQSGRVIESGSHD 536
+ R AD + L +G ++E GS +
Sbjct: 212 PQQVARVADYVAFLYNGELVEWGSSN 237
|
Length = 257 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-21
Identities = 73/211 (34%), Positives = 112/211 (53%), Gaps = 28/211 (13%)
Query: 345 TIGLVGSSGSGKS-TVISLLERFYDPV----KGNILLDGHKIKKL---QLKWLR-SQMGL 395
T+ LVG SGSGKS T +S+L P G+IL DG + QL+ +R +++G+
Sbjct: 38 TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM 97
Query: 396 VNQEPILFSTSIKENILIGK----PGASMETVVKAAQAANVHDFIMKLN-DGYETKVGQF 450
+ QEP+ TS+ IGK + +AA A + + + E ++ +
Sbjct: 98 IFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAY 154
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ-EALD-----QASQGRT 504
+LSGGQ+QR+ IA AL +P +L+ DE T+ALD VQ + LD QA G
Sbjct: 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVT----VQAQILDLLKELQAELGMA 210
Query: 505 MIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
++ I H L +RK AD + V+Q G ++E+G+
Sbjct: 211 ILFITHDLGIVRKFADRVYVMQHGEIVETGT 241
|
Length = 534 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 4e-21
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 24/195 (12%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KK 383
K+V P T IG SG GKST++ R D V+G + G +
Sbjct: 27 KNVWLDIPKNQITAFIG---PSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83
Query: 384 LQLKWLRSQMGLVNQEPILFSTSIKENILIGKP----GASMETVVKAA--QAANVHDFIM 437
+ +R ++G+V Q+P F SI +NI G M+ +V+ + QAA
Sbjct: 84 VDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAA------- 136
Query: 438 KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497
L D + K+ Q G+ LSGGQ+QR+ IARA+ P+++L+DE SALD S ++E +
Sbjct: 137 -LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195
Query: 498 QASQGRTMIIIAHRL 512
+ + T+II+ H +
Sbjct: 196 ELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-21
Identities = 67/241 (27%), Positives = 123/241 (51%), Gaps = 27/241 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I ++NV SY +++ ++L I G +++G +G+GKST++ ++ R SG +
Sbjct: 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+D + S ++L ++++ QE + + T+R + +G+ ++ + K
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDR 113
Query: 1097 EFISST------EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
I+ ED D Y E LSGGQ+QR +A + ++ +LLDE + LD
Sbjct: 114 RIINEAIEYLHLEDLSDRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 1151 SENLVQEALEKMM--VGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT-----QSSLL 1202
+ + L ++ +G+T VVV H ++ +D+IV +KNGKVV+QG+ Q +L
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEIL 229
Query: 1203 S 1203
S
Sbjct: 230 S 230
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 5e-21
Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 30/242 (12%)
Query: 978 IELKNVFFSYPS-RPDQMIFKG-----LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
I L+NV ++Y + P F+G + L IE G A +G +GSGKSTI+ L+ +
Sbjct: 3 INLQNVSYTYQAGTP----FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58
Query: 1032 PQSGSVMVDERNI----KSYNLRKLRSCIALVSQ--EPTLFAGTIRQNIVYGKE----VA 1081
P GSV VD+ I K+ +++++R + LV Q E LF T+ +++ +G +
Sbjct: 59 PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQ 118
Query: 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
EAE LA + +E ++ + +LSGGQ +R+A+A + P IL+LD
Sbjct: 119 EEAEALAREKLA----LVGISESLFE----KNPFELSGGQMRRVAIAGILAMEPKILVLD 170
Query: 1142 EATSALDSASENLVQEALEKM-MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199
E T+ LD + +K+ G T V+V H + + AD + V++ GK+V G
Sbjct: 171 EPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230
Query: 1200 SL 1201
+
Sbjct: 231 DI 232
|
Length = 280 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-21
Identities = 72/205 (35%), Positives = 110/205 (53%), Gaps = 27/205 (13%)
Query: 346 IGLVGSSGSGKSTV---ISLLERFYDPVKG-----NILLDGHKI---KKLQLKWLRSQMG 394
+ ++G SGSGK+T+ I+LLE+ P G +I +D + +K ++ LR +G
Sbjct: 32 VAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG 88
Query: 395 LVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
V Q LF ++ ENI+ G ++ K A + + K+ G K + +
Sbjct: 89 FVFQNFNLFPHRTVLENIIEGP--VIVKGEPKEEATARARELLAKV--GLAGKETSYPRR 144
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ----ASQGRTMIIIA 509
LSGGQ+QR+AIARAL P+++L DE TSALD E +V E L+ A + RTM+I+
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQLAQEKRTMVIVT 201
Query: 510 HRLSTIRK-ADLIGVLQSGRVIESG 533
H +S R AD + GR++E G
Sbjct: 202 HEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 6e-21
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 29/226 (12%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNI-KSYNL 1049
K + L I A + AL+G SG GKST++ + R D +G + +D +I + ++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYG--------KEV---ATEAEIRKAAVLANAHEF 1098
LR + +V Q+P F +I +N+ YG K+V E +R AA+ +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDR 138
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
+ S G LSGGQ+QR+ +AR + P ++L+DE TSALD + + ++E
Sbjct: 139 LKSHAFG-----------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL 187
Query: 1159 LEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+E++ T V+V H + ++ +D G++VE + S
Sbjct: 188 MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233
|
Length = 249 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 6e-21
Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 30/238 (12%)
Query: 309 PVINSEDEIGKTLAYLRGEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFY 367
VI + D L G+ + DV P T ++G SG GKST + + R
Sbjct: 38 TVIEARD-----LNVFYGDEQALDDVSMDIPENQVT---AMIGPSGCGKSTFLRCINRMN 89
Query: 368 D-----PVKGNILLDGHKIKKLQLK--WLRSQMGLVNQEPILFSTSIKENILIG-----K 415
D V+G + G + + LR ++G+V Q+P F SI +N+ G
Sbjct: 90 DLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY 149
Query: 416 PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475
G E V ++ + A L D + ++ G+ LSGGQ+QR+ IARA+ DP+++
Sbjct: 150 DGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVI 202
Query: 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL-STIRKADLIGV-LQSGRVIE 531
L+DE SALD + +++ +++ ++ T++I+ H + R +D V L G ++E
Sbjct: 203 LMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 6e-21
Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++++ + ++Y + KG+ + I+ G+ A++G +G+GKST+ + P SG +
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1038 MVDERNI--KSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYG--KEVATEAEIRKAAV 1091
+ D + I L KLR + +V Q+P LF+ ++ Q++ +G E E+RK
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD--- 1148
A I +D T+C LS GQK+R+A+A ++ P +L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKDK-PTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1149 -SASENLVQEALEKMMVGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLS 1203
S L+ E +++ G T ++ H + + DN+ V+K G+V+ QG + +
Sbjct: 177 VSEIMKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 6e-21
Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 24/241 (9%)
Query: 978 IELKNVFFSY-PSRPDQMIFKGLT---LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
I+ +NV + Y P P M KGL ++E G VALVG +GSGKST++ P
Sbjct: 3 IKFENVDYIYSPGTP--MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 1034 SGSVMVDERNIK----SYNLRKLRSCIALVSQ--EPTLFAGTIRQNIVYGKEV--ATEAE 1085
SG++ + +I + NL+KLR ++LV Q E LF T+ +++ +G + +E E
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 1086 IRKAAVLANAHEFISSTEDGYDTYCGERG-VQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
++ A+ +++ G + +LSGGQ +R+A+A + P IL LDE
Sbjct: 121 AKEKAL-----KWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1145 SALDSAS-ENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
+ LD + ++Q + G T ++V H + + + AD+++V+++GK+++ + +
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1203 S 1203
S
Sbjct: 234 S 234
|
Length = 287 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 7e-21
Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 30/231 (12%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF---YDPQ---SGSVMVDERNIK 1045
D+ I K +T+KI ++G SGSGKST++ ++ R YD + G V+ ++I
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 1046 SYNLRKLRSCIALVSQEPTLFAG-TIRQNIVY---------GKEVA--TEAEIRKAAVLA 1093
+ KLR + +V Q+P F +I NI Y +E+ E +RK +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
++ ++S QLSGGQ+QR+ +ARA+ P +LL+DE TS +D +
Sbjct: 142 EVYDRLNSPAS-----------QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 1154 LVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+++ + ++ V+V+H + + AD + + NG++VE G+ + + +
Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241
|
Length = 257 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 8e-21
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 13/200 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS----QMGLVNQEPILF 403
++G SGSGKST++ LL R +P +G +L+DG I K+ LR ++ +V Q L
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 404 S-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
++ +N G A + + +A + + G E + +LSGG +QR+
Sbjct: 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQV-----GLENYAHSYPDELSGGMRQRV 173
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRL-STIRKAD 519
+ARAL +P ILL+DEA SALD +Q+ L QA RT++ I+H L +R D
Sbjct: 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD 233
Query: 520 LIGVLQSGRVIESGSHDVLM 539
I ++Q+G V++ G+ D ++
Sbjct: 234 RIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 8e-21
Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKKLQLKWLRSQMGL 395
PD L+G SGSGKST++ + R + V G + LDG I K+ + LR ++ +
Sbjct: 27 PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM 86
Query: 396 VNQEPILFST-SIKENILIG-------KPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447
V Q P SI EN+ +G K ++ V+ A +L D + ++
Sbjct: 87 VFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEK------AQLWDEVKDRL 140
Query: 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMII 507
+LSGGQ+QR+ IARAL P++LL DE T+ LD E+ ++ + + T+++
Sbjct: 141 DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVL 200
Query: 508 IAH-RLSTIRKADLIGVLQSGRVIESG 533
+ H R +D + L G+++E G
Sbjct: 201 VTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 9e-21
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI---KSYNLRKLR 1053
++ + G+ L+G +G+GK+T+ LI F P SGSV+ D +I + + +L
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
Query: 1054 SCIALVSQEPTLFAG-TIRQNIVYG------------KEVATEAEIRKAA--VLANAHEF 1098
I Q P LF T+ +N++ + E E R+ A +L E
Sbjct: 77 --IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL----ER 130
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
+ G +LS GQ++R+ +ARA+ +P +LLLDE + L+ + E
Sbjct: 131 V-----GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 1159 LEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ ++ G T ++V H + + AD + V+ G+V+ +GT
Sbjct: 186 IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 9e-21
Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVM-----VDERNIKS 1046
KG+ ++ E K AL+G SGSGKST + + R D +G ++ ++ + I
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96
Query: 1047 YNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA-----------TEAEIRKAAVLANA 1095
Y +RK I +V Q P FA +I +NI + E A E +++AA+
Sbjct: 97 YEMRKH---IGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALW--- 150
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
D + + LSGGQ+QR+ +ARA+ P ILL+DE SALD S +
Sbjct: 151 --------DQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL 202
Query: 1156 QEALEKMMVGRTCVVVAHRLSTIQKA-DNIVVIKNGKVVE 1194
+E + ++ T ++V H + +A D G ++E
Sbjct: 203 EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 9e-21
Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS- 1036
I+++ V F Y + K + + + A++G SG GKST++ + R D SG+
Sbjct: 5 IKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1037 ----VMVDERNIKSYNLR--KLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKA 1089
V++D NI S NL LR + +V Q+P F +I N+ +G + + T A+ R
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
V+ + + ++ D + G+ LSGGQ+QR+ +AR + P ++L+DE SALD
Sbjct: 122 EVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 1150 ASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV-VIKNGKVVEQGTQSSLLS 1203
S ++E ++++ T +V H + +A + + G +VE G + S
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 71/231 (30%), Positives = 100/231 (43%), Gaps = 39/231 (16%)
Query: 328 IEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
I FK+V F Y + P +VG +GSGKST+ L+ G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPI-LFSTSIK--------ENILIGKPGASMETVVKA 426
+ I + LR +G+V Q P F SI EN + P M V
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV--PYDEMHRRVSE 125
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
A + M YE LSGGQKQR+AIA L +P +++LDEATS LD
Sbjct: 126 A----LKQVDMLERADYEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 487 ESE----RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
++ +V++ ++ T+I I H LS +AD + V+ G V + G
Sbjct: 176 DARQNLLDLVRKV--KSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEG 224
|
Length = 269 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 325 RGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL 384
+ +DV + + + ++G SG GK+T+++L+ F P +G+I L+G +I+
Sbjct: 16 KPRSALEDVSLTIAS---GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP 72
Query: 385 QLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGY 443
++ G+V Q L ++ +N+ G +E KA + H + + G
Sbjct: 73 G-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIE---KAQRREIAHQMLALV--GL 122
Query: 444 ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ-- 501
E ++ QLSGG +QR+ IARAL +P++LLLDE ALDA + +QE L Q
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 502 GRTMIIIAHRL-STIRKADLIGVLQS--GRVIESGSHDVLMQMNNGE 545
G+ +++I H + + A + VL GRV+E D + GE
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGE 229
|
Length = 259 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-20
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 25/229 (10%)
Query: 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
I+ ++ Y P+ T+ L+G SG+GKS+++ +L P G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 378 G-------HKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQA 429
G K ++ LR +G+V Q+ L+ +++EN LI P + + K
Sbjct: 63 GNHFDFSKTPSDK-AIRDLRRNVGMVFQQYNLWPHLTVQEN-LIEAP-CRVLGLSKDQAL 119
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-S 488
A + +L + ++ + LSGGQ+QR+AIARAL+ +P++LL DE T+ALD E +
Sbjct: 120 ARAEKLLKRLR--LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177
Query: 489 ERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
+IV + A G T +I+ H + RK A + +++G ++E G
Sbjct: 178 AQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 1e-20
Identities = 69/218 (31%), Positives = 113/218 (51%), Gaps = 35/218 (16%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK-------------KLQLKWLRSQ 392
I ++GSSGSGKST + + P +G+I+++G I K QL+ LR++
Sbjct: 34 ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93
Query: 393 MGLVNQEPILFS-TSIKENILIGKPGASMETVVKA-----AQAANVHDFIMKLNDGYETK 446
+ +V Q L+S ++ EN+ ME ++ +A + E
Sbjct: 94 LTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145
Query: 447 VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQG 502
G++ V LSGGQ+QR++IARAL +P++LL DE TSALD E RI+Q+ A +G
Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL---AEEG 202
Query: 503 RTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539
+TM+++ H + R + + L G++ E G+ + L
Sbjct: 203 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-20
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSYNLRKLRSCI 1056
+ A AL G SGSGK+++I +I P G + ++ R + K L + I
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
V Q+ LF T+R N+ YG + A+ + L +
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLL-----------DRYPG 127
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS--------ENLVQEALEKMMVGRT 1167
LSGG+KQR+A+ RA+L P +LL+DE ++LD E L E +
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI----- 182
Query: 1168 CVVVAHRLSTI-QKADNIVVIKNGKVVEQG 1196
+ V+H L + + AD +VV++NGKV G
Sbjct: 183 -LYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 1e-20
Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 47/267 (17%)
Query: 951 TILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVA 1010
T+++ + + + + A + + T+ N+++ + K + L I + A
Sbjct: 4 TVVNVQVKNEEKIETAPKKVVFDTQNL----NLWYG-----EDHALKNINLDIHENEVTA 54
Query: 1011 LVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNI--KSYNLRKLRSCIALVSQEP 1063
++G SG GKST I + R + +G ++ ++NI KSY++ +LR+ + +V Q+P
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114
Query: 1064 TLFAGTIRQNIVYGKEV-----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
F +I N+ YG ++ E +R AA+ +D
Sbjct: 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHD---- 163
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS----ENLVQEALEKMMVGRTC 1168
LSGGQ+QR+ +AR + P ++L+DE TSALD S E LVQE + +
Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDY----SI 219
Query: 1169 VVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
++V H + + +D NG V E
Sbjct: 220 IIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 1e-20
Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 9/203 (4%)
Query: 347 GLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKKLQLK--WLRSQMGLVNQE 399
L+G SG GK+T + + R +D V G ILLDG I ++ +R ++G+V Q+
Sbjct: 34 ALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93
Query: 400 PILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
P F T S+ +N++ G A + + A L D + ++ LSGGQ
Sbjct: 94 PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL-STIRK 517
+QR+ IARAL +P+ILL+DE TSALD S +++ + + T+II+ H + R
Sbjct: 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARV 213
Query: 518 ADLIGVLQSGRVIESGSHDVLMQ 540
+D G ++E G D L
Sbjct: 214 SDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-20
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 27/237 (11%)
Query: 973 PTKGFIELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
P + IE+ ++ + ++ I KG+ L ++ G+TVA+VG SGSGKST++ ++ D
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 1032 PQSGSVMVDERNIKSYN---LRKLRSC-IALVSQE----PTLFAGTIRQNIVYGKEVATE 1083
P SG V + + + + LR+ + V Q P L T +N VA
Sbjct: 62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL---TALEN------VALP 112
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGER----GVQLSGGQKQRIALARAVLKNPMILL 1139
E+R + A + G+R QLSGG++QR+ALARA P +L
Sbjct: 113 LELRGESS---ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169
Query: 1140 LDEATSALDSASENLVQEAL--EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194
DE T LD A+ + + + L G T V+V H + D + +++G++VE
Sbjct: 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 1e-20
Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 19/239 (7%)
Query: 970 IEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029
E + +E+K++ Y ++ +++ IE AL+G SG GKST + I R
Sbjct: 14 FPEAKEHILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70
Query: 1030 YD-----PQSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVAT 1082
D G ++ + NI + N+ LR I +V Q+P F +I NI + + A
Sbjct: 71 NDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG 130
Query: 1083 EAEIRKAAVLANAHEFISSTE----DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138
E R+ +VL E S T+ D + LSGGQ+QR+ +AR + P +L
Sbjct: 131 E---RRKSVLDEIVEE-SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186
Query: 1139 LLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRL-STIQKADNIVVIKNGKVVEQG 1196
LLDE SALD S ++E + ++ + ++V H + ++ +D NG +VE
Sbjct: 187 LLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 20/211 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE NV +YP ++L I G+ + L G SG+GK+T++ L+ P G V
Sbjct: 2 IEFHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1038 MVDERNI---KSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEV----ATEAEIRKA 1089
+ ++ + L LR I +V Q+ L T+ +N+ EV E + R
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
A L + E D + QLSGG++QR+A+ARA++ +P +LL DE T LD
Sbjct: 120 AAL----RQVG-LEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 1150 ASENLVQEALEKM-MVGRTCVVVAHRLSTIQ 1179
+ + L+++ G T +V H LS +
Sbjct: 171 DLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 12/196 (6%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQE-P 400
T+GL+G SG GKST+ LL P +G + G + +L Q + R + LV Q+ P
Sbjct: 39 TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSP 98
Query: 401 ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQ 458
+ + +IG+P + ++ ++ Q A + + + + L K+ + QLSGGQ
Sbjct: 99 SAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPR---QLSGGQ 155
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLSTIR 516
QRI IARAL PK+++LDEA S LD + ++ E L Q + G + I H L ++
Sbjct: 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQ 215
Query: 517 K-ADLIGVLQSGRVIE 531
+ V+ G+++E
Sbjct: 216 SFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 2e-20
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 71/224 (31%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+EL+ + + G++L + G+ AL+G++G+GKST++ ++ SG
Sbjct: 1 LELRGITKRFGGVK---ALDGVSLSVRRGEVHALLGENGAGKSTLMKIL-------SGLY 50
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
D G I V GKEV+ A R A
Sbjct: 51 KPDS--------------------------GEIL---VDGKEVSF-ASPRDAR------- 73
Query: 1098 FISSTEDGYDTYCGERGV----QLSGGQKQRIALARAVLKNPMILLLDEATSALDSA-SE 1152
G+ QLS G++Q + +ARA+ +N +L+LDE T+AL A E
Sbjct: 74 --------------RAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119
Query: 1153 NL--VQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193
L V L G + ++HRL + + AD + V+++G+VV
Sbjct: 120 RLFKVIRRLRAQ--GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 19/231 (8%)
Query: 978 IELKNVFFSYPSRPDQ---MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
I+ KNV + Y S + + + L+++ G+ + ++G++GSGKSTI + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1035 GSVMVDERNIKSY-NLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKE---VATEAEIRK 1088
G V VD + NL +R+ +V Q P + A + +++ +G E + E EIR+
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE-EIRE 123
Query: 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
+ + + + E Y + LSGGQKQR+A+A + P ++ DE T+ LD
Sbjct: 124 R--VDESLKKVGMYE--YRRHAPH---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 1149 SASENLVQEALEKM--MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
+ V ++++ G T +++ H + +AD I+V+ +GKVV +GT
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 40/229 (17%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNI---KSY 1047
+G++L++E G+ VAL+G++G+GK+T I+GL+ P+SG ++ D +I +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR----PRSGRIIFDGEDITGLPPH 73
Query: 1048 NLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGY 1106
+L IA V + +F T+ +N++ G A + E+ Y
Sbjct: 74 ERARLG--IAYVPEGRRIFPRLTVEENLLLG-----------AYARRDKEAQERDLEEVY 120
Query: 1107 D------TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE--- 1157
+ +R LSGG++Q +A+ARA++ P +LLLDE + L + +V+E
Sbjct: 121 ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFE 177
Query: 1158 ALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
A++++ G T ++V + AD V++NG++V GT + LL+
Sbjct: 178 AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----P 1032
+E KN+ Y ++ + L I K AL+G SG GKST + + R D
Sbjct: 5 MESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 1033 QSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---------- 1080
G V++D +NI K ++ +LR + +V Q+P F +I N+ YG +
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 1081 -ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
E ++KAA+ + + + ++LSGGQ+QR+ +AR + P ++L
Sbjct: 122 KIVEWALKKAALWDEVKDDLKKS-----------ALKLSGGQQQRLCIARTIAVKPDVIL 170
Query: 1140 LDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
+DE TSALD S +++ + ++ T V+V H + + +D G ++E
Sbjct: 171 MDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT 230
Query: 1199 SSLL 1202
+
Sbjct: 231 EKIF 234
|
Length = 251 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-20
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 17/231 (7%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--- 1031
K I +V Y KG+ L + AL+G SG GKST + + R D
Sbjct: 3 KKIITSSDVHLFYGKFE---ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIP 59
Query: 1032 --PQSGSVMVDERNIKSYNLR--KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087
+G+V + +NI + N +LR + +V Q+P F +I +N++YG +A ++
Sbjct: 60 GVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAG---VK 116
Query: 1088 KAAVLANAHEF---ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
AVL A E ++ D + E + LSGGQ+QR+ +AR + P ++LLDE T
Sbjct: 117 DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 1145 SALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
SALD S ++ L ++ T ++V H + + +D G ++E
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 3e-20
Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 322 AYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI 381
AYL G + V F RP L G SG+GKST++ L+ P G I GH I
Sbjct: 10 AYLGGRQALQGVTFHM--RPGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66
Query: 382 KKL---QLKWLRSQMGLVNQEP-ILFSTSIKENILIGK--PGASMETVVKAAQAANVHDF 435
+L ++ +LR Q+G++ Q+ +L ++ +N+ I GAS + + + AA
Sbjct: 67 TRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA----- 121
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD-AESERIVQE 494
+ K+ G K F +QLSGG++QR+ IARA++ P +LL DE T LD A SE I++
Sbjct: 122 LDKV--GLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL 179
Query: 495 ALDQASQGRTMIIIAHRLSTI-RKADLIGVLQSGRVIESGSHD 536
+ G T+++ H + I R++ + L G + G
Sbjct: 180 FEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL--HGGVG 220
|
Length = 222 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 34/220 (15%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTI---IGLIERFYDPQSGSVMVDERNIKSYN---LRK 1051
G++ +E GKT+A+VG+SG GKST+ + +IE P G + +++ + +
Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKL 89
Query: 1052 LRSCIALVSQEPTLFAG-----TIRQNIVYGKEVATE--AEIRKAAVLANAHEFISSTED 1104
LR I +V Q P + + Q + + T A R+ LA + E
Sbjct: 90 LRQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH 147
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ-EALEKMM 1163
YD Y SGGQ+QRIA+ARA++ +P +++ DE SALD + VQ + L MM
Sbjct: 148 -YDRYPH----MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQAQVLNLMM 198
Query: 1164 -----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+G + V ++H LS ++ AD ++V+ G+ VE+GT
Sbjct: 199 DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
Length = 327 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 3e-20
Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 24/197 (12%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTS 406
GL+G +G+GKST++ ++ P G I+ DGH + K L L+ P+ + +
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHKIGSLIESPPLYENLT 86
Query: 407 IKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
+EN+ L+G P + ++ V+ I+ L + + K QF S G KQR
Sbjct: 87 ARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTGKKKAKQF----SLGMKQR 132
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-AD 519
+ IA AL+ PK+L+LDE T+ LD + ++E + QG T+I+ +H LS +++ AD
Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLAD 192
Query: 520 LIGVLQSGRVIESGSHD 536
IG++ G + G +
Sbjct: 193 HIGIISEGVLGYQGKIN 209
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (228), Expect = 3e-20
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-----NILLDGHK 380
G+ V +P R T L+G +GSGK+T + L R D V G ++LL G
Sbjct: 33 GKTVLDQVSMGFPARAVT---SLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS 89
Query: 381 IKKLQ-LKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKL 439
I + + R ++G++ Q P F SI +N+L G + + A + L
Sbjct: 90 IFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL 149
Query: 440 NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499
D + ++ +LSGGQ+Q + +AR L +P++LLLDE TSALD + ++E +
Sbjct: 150 WDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 500 SQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHDVLM 539
+ T+II+ H L+ R +D + GR++E G + L
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 26/237 (10%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI--------KKLQLKWLRSQMGLVNQ 398
G +G SG GKSTV+ L R D VKG +GH K + +R +G+V Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKG-FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ 96
Query: 399 EPILFSTSIKENILIG-----KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
+P FS SI +N+ G G + V A Q A L D + K+ G+
Sbjct: 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWDEVKDKLKVSGLS 149
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGGQ+QR+ IARA+ +P++LLLDE SALD + R V+E + + + T+ ++ H +
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQ 209
Query: 514 TIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYN 570
+ S + + L++M G +++ Q + + ++ SG ++
Sbjct: 210 QAIRVADTTAFFSVDISQGTRTGYLVEM-----GPTAQIFQNPREQLTSDYISGKFS 261
|
Length = 261 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-20
Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 31/224 (13%)
Query: 328 IEFKDVDFSYPTRPDT--------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
+ + FSY +P +VG SGSGKST+++L+ F P G +L++G
Sbjct: 1 VRLDKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV 60
Query: 380 KIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGK-PGASM-----ETVVKAAQAANV 432
+ + ++ QE LF+ ++++N+ +G PG + + + A +
Sbjct: 61 DVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL 118
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD-AESERI 491
+L +LSGG++QR+A+AR L+RD +LLLDE +ALD A +
Sbjct: 119 AGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167
Query: 492 VQEALD-QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
+ LD A T++++ H+ ++ A + L +GR+ G
Sbjct: 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-20
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQ-MGLVNQEP 400
T+ +VG SGSGKST++++L DP G + L G + KL LR++ +G V Q
Sbjct: 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97
Query: 401 ILFST-SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQL 454
L + EN+ L G+ A KA A G ++ + QL
Sbjct: 98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAV----------GLGKRLTHYPAQL 147
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL--DQASQGRTMIIIAHRL 512
SGG++QR+A+ARA P +L DE T LD + + + L +G T++++ H
Sbjct: 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207
Query: 513 STIRKADLIGVLQSGRVIE 531
+ D L+SGR++E
Sbjct: 208 QLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 4e-20
Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 16/230 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+L V SY D+++ L+ I G+ L+G +G+GKSTI ++ P G +
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNI-VYGKEVATEA-EIRKAAVLAN 1094
V + S R R I +V Q L T+R+N+ V+G+ EI AV+ +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIE--AVIPS 118
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
EF + E D R LSGG K+R+ LARA++ +P +L+LDE T+ LD + +L
Sbjct: 119 LLEF-ARLESKADV----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173
Query: 1155 VQEALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
+ E L ++ G+T ++ H + ++ D + V+++G+ + +G +L+
Sbjct: 174 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-20
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STS 406
L+G SG GK+T + ++ +P G I + G + L K + +V Q L+ +
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMT 88
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466
+ +NI G + V K V + L E + + QLSGGQ+QR+A+ R
Sbjct: 89 VYDNIAFG---LKLRKVPKDEIDERVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGR 143
Query: 467 ALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAH-RLSTIRKADLIGV 523
A++R+PK+ L+DE S LDA+ ++ L Q G T I + H ++ + AD I V
Sbjct: 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV 203
Query: 524 LQSGRVIESG 533
+ G++ + G
Sbjct: 204 MNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 5e-20
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 13/211 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+NV + I ++ + AG+ + G SG GKST++ ++ P SG++
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+ + +I + R ++ +Q PTLF T+ N+++ ++ + L +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAI-FLDDLER 123
Query: 1098 FISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
F + + +LSGG+KQRI+L R + P +LLLDE TSALD ++++ V
Sbjct: 124 F------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 1157 EALEKMMVGRTCVV--VAHRLSTIQKADNIV 1185
E + + + + V V H I AD ++
Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 5e-20
Identities = 67/241 (27%), Positives = 117/241 (48%), Gaps = 36/241 (14%)
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
L+NV F P R + L+L AGK L+G +GSGKST++ ++ R P G +++
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1040 DERNIKSYNLRKLRSCIALVSQE-PTLFAGTIRQNIVYGK----------EVATEAEIRK 1088
D + ++S++ + +A + Q+ P T+R+ + G+ A ++ +
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 1089 AAVLAN----AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
A L AH + S LSGG++QR +A V ++ LLLDE T
Sbjct: 131 AISLVGLKPLAHRLVDS---------------LSGGERQRAWIAMLVAQDSRCLLLDEPT 175
Query: 1145 SALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
SALD A + V + ++ G T + V H ++ + D +V ++ G+++ QGT + L
Sbjct: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 1202 L 1202
+
Sbjct: 236 M 236
|
Length = 265 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-20
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 21/178 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
L+G SG GKSTV+ L R D +KG +L DG + ++ +R ++G+V Q+P
Sbjct: 44 LIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103
Query: 401 ILFSTSIKENILIGK-----PGASMETVVKAAQAANVHDFIM-KLNDGYETKVGQFGVQL 454
F SI ENI G G E V ++ + A V D KLN+ G L
Sbjct: 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNES--------GYSL 155
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
SGGQ+QR+ IAR + +P+++L+DE SALD S ++E + + + T++I+ H +
Sbjct: 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-20
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 27/218 (12%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNI--KSYNL 1049
K + L I + A +G SG GKSTI+ R D G V +N+ +
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---------ATEAEIRKAAVLANAHEFIS 1100
++R I +V Q+P F +I NI YG + E +R+AA+
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALW-------- 138
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE 1160
D + G+ LSGGQ+QR+ +ARA+ P ++L+DE SALD S ++E +
Sbjct: 139 ---DEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195
Query: 1161 KMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198
++ T ++V H + + ++ N ++ E G +
Sbjct: 196 ELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233
|
Length = 264 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 6e-20
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 35/235 (14%)
Query: 328 IEFKDVDFSYPTRPDTPTI----------GLVGSSGSGKSTVISLLERFYD---PVK--G 372
I+ KD+ F Y T I ++G SG GKST I L R + PVK G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 373 NILLDGHKI--KKLQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVV 424
+ G I ++ + LR Q+G+V Q P F SI EN+ G P A ++ +V
Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIV 127
Query: 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484
++A L + K+ + + LSGGQ+QR+ IARAL PK+LL+DE SAL
Sbjct: 128 ESALKG------AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 485 DAESERIVQEALDQASQGRTMIIIAHRL-STIRKADLIGVLQS-----GRVIESG 533
D + V+E + T+ I+ H + R +D + G+++E G
Sbjct: 182 DPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236
|
Length = 259 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 6e-20
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 43/203 (21%)
Query: 348 LVGSSGSGKSTVISLLERF--YDPVKGNILLDGHKIKKLQLKWLRSQMG--LVNQEPILF 403
L+G +GSGKST+ + Y+ +G IL G I L + R+++G L Q P
Sbjct: 31 LMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-ERARLGIFLAFQYPPEI 89
Query: 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
PG DF+ +N+G SGG+K+R
Sbjct: 90 ------------PGVKNA------------DFLRYVNEG-----------FSGGEKKRNE 114
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAH--RLSTIRKADL 520
I + L+ +P + +LDE S LD ++ R+V E +++ +G++++II H RL K D
Sbjct: 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDR 174
Query: 521 IGVLQSGRVIESGSHDVLMQMNN 543
+ VL GR+++SG ++ +++
Sbjct: 175 VHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (228), Expect = 7e-20
Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 31/243 (12%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
E++N F Y +R + + L L I+ K A +G SG GKST + + + D G+
Sbjct: 82 EIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1039 VDERNIKSYNLR-------KLRSCIALVSQEPTLFAGTIRQNIVYGK-----------EV 1080
E N R +LR+ I +V Q+PT F +I N+ YG E
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLL 1140
E ++ AA+ +D D + G LSGGQ+QR+ +ARA+ P +LL+
Sbjct: 201 IVEKSLKSAALW-------DEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 1141 DEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199
DE TSALD + ++E + ++ + ++V H ++ Q+ +D V G + E G
Sbjct: 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309
Query: 1200 SLL 1202
++
Sbjct: 310 TIF 312
|
Length = 329 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 7e-20
Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 19/184 (10%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKKLQLKW--LRSQM 393
P I +G SG GKST++ R D V+G +L I Q+ LR Q+
Sbjct: 44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQV 103
Query: 394 GLVNQEPILFSTSIKENILI-----GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
G+V Q P F SI ENI G G E V + + A + + + + K+
Sbjct: 104 GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLK 156
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
+ G LSGGQ+QR+ IARA+ P +LL+DE SALD S R V+E + + T+I++
Sbjct: 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216
Query: 509 AHRL 512
H +
Sbjct: 217 THNM 220
|
Length = 274 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 8e-20
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYD--PQS---GSVMVDERNI--KSYNLRKLR 1053
LKI A K +A +G SG GKST++ R D P + G ++ +RNI N KLR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 1054 SCIALVSQEPTLFAGTIRQNIVYGKEV---------ATEAEIRKAAVLANAHEFISSTED 1104
+ +V Q P F +I +NI + E +R+AA+ + +
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK---- 156
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164
E+G LSGGQ+QR+ +ARA+ P +LL+DE SALD S V+E ++
Sbjct: 157 -------EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 1165 GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
T ++V H + + + N ++ E G + L
Sbjct: 210 QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247
|
Length = 274 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 8e-20
Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 24/244 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--- 1034
I++ N+ F Y + Q I +G++++I K A++G SG GKST + + R + +S
Sbjct: 8 IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 1035 --GSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKA 1089
G V +NI + NL +LR +++V +P LF ++ N+ YG K V ++
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 1090 AVLANAHEFISSTE--DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
++ +A + + D + + LSGGQ+QR+ +ARA+ P +LL+DE L
Sbjct: 125 DIVESA---LKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
Query: 1148 DSASENLVQEALEKMMVGR--TCVVVAHRLSTIQKADNIVVI------KNGKVVEQGTQS 1199
D + V+ ++ + + T V+V+H L + + + + G++VE G
Sbjct: 182 DPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTK 241
Query: 1200 SLLS 1203
+ +
Sbjct: 242 KIFN 245
|
Length = 261 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 8e-20
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 16/200 (8%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
KG+ L I+ G+ ++L+G SG GKST++ LI P SG V+++ + I ++
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57
Query: 1057 ALVSQEPTLFAG-TIRQNIVYG-KEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
+V Q +L T+R+NI V ++ + A++ + TE +R
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-----KR 111
Query: 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVV 1171
QLSGG KQR+A+ARA+ P +LLLDE ALD+ + +QE L ++ T ++V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 1172 AHRL-STIQKADNIVVIKNG 1190
H + + +D +V++ NG
Sbjct: 172 THDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 8e-20
Identities = 79/257 (30%), Positives = 121/257 (47%), Gaps = 29/257 (11%)
Query: 300 RIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTV 359
+IF+ V + E+ K Y G K+++ + T L+G SG GKST
Sbjct: 2 QIFKPAGDVSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVT---ALIGPSGCGKSTF 58
Query: 360 ISLLERFYDPVKGN-----ILL--DGHKIKKLQLK--WLRSQMGLVNQEPILFSTSIKEN 410
+ R +D GN I+L D I ++ +R ++ +V Q+P F SI EN
Sbjct: 59 LRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFEN 118
Query: 411 ILIG------KPGASMETVVKAA--QAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
+ G K + +E V+ A AA L D + ++G LSGGQ+QR+
Sbjct: 119 VAYGLRIRGVKRRSILEERVENALRNAA--------LWDEVKDRLGDLAFNLSGGQQQRL 170
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL-STIRKADLI 521
IARAL DP+ILL DE TSALD + ++E + T++I+ H + R +D
Sbjct: 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYT 230
Query: 522 GVLQSGRVIESGSHDVL 538
+ G +IE G+ D +
Sbjct: 231 AYMYMGELIEFGATDTI 247
|
Length = 265 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 9e-20
Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 19/206 (9%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVK-----GNILLDGHKI--KKLQLKWLRSQM 393
P L+G SG GKST I L R D +K G + ++G I + + LR +
Sbjct: 36 PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNV 95
Query: 394 GLVNQEPILFSTSIKENILIGKP--GAS---METVVKAAQAANVHDFIMKLNDGYETKVG 448
G+V Q+P F SI +N+ G GA+ ++ VV+ A + L D ++
Sbjct: 96 GMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRS------AALWDETSDRLK 149
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIII 508
+ LSGGQ+QR+ IAR L PKI+L DE TSALD S +++ + + T++I+
Sbjct: 150 SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIV 209
Query: 509 AHRL-STIRKADLIGVLQSGRVIESG 533
H + R +D G G +IE G
Sbjct: 210 THNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 74/236 (31%), Positives = 107/236 (45%), Gaps = 49/236 (20%)
Query: 328 IEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNI 374
I + + F YP T + +VG +GSGKST+ LL P G I
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 375 LLDGHKIKKLQLKWLRSQMGLVNQEP------------ILFSTSIKENILIGKPGASM-E 421
+ G + + + +R Q+G+V Q P + F ENI G P M E
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL---ENI--GVPREEMVE 119
Query: 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481
V +A + + DF+ E +LSGGQKQR+AIA L P I++LDEAT
Sbjct: 120 RVDQALRQVGMEDFLN-----REPH------RLSGGQKQRVAIAGVLALQPDIIILDEAT 168
Query: 482 SALD----AESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
S LD E V++ +Q +G T++ I H L +AD + V+ G ++E G
Sbjct: 169 SMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 16/172 (9%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK---KLQLKWLRSQMGLVNQEPILF- 403
L G SGSGK+T+++L+ +G++ + G ++ + +L LR +G + Q L
Sbjct: 36 LTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95
Query: 404 STSIKENILIG---KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
+ ++N+ + +P S + + A+A M G + + LSGGQKQ
Sbjct: 96 FLTARQNVQMALELQPNLSYQEARERARA-------MLEAVGLGDHLDYYPHNLSGGQKQ 148
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAH 510
R+AIARAL+ PK++L DE T+ALD++S R V E + + QG T++I+ H
Sbjct: 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-19
Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 18/216 (8%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI----KKLQLK 387
D DF+ P + T + G SGSGK+T+I L+ P +G I+L+G + K + L
Sbjct: 15 DADFTLPGQGVT---AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP 71
Query: 388 WLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK 446
+ ++G V QE LF S++ N+ G + ++ + +++L G
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGM------KRARPSERRISFERVIELL-GIGHL 124
Query: 447 VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRT 504
+G+ +LSGG+KQR+AI RAL+ P++LL+DE +ALD + + L++ G
Sbjct: 125 LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP 184
Query: 505 MIIIAHRLSTI-RKADLIGVLQSGRVIESGSHDVLM 539
++ ++H L + R AD + VL+ GRV +G +
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-19
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 39/196 (19%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I L+N+ +Y RP + + ++L + G+ + LVG++G+GKST++ ++ +P SG V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+ ++ + +SQEP L T+ ++ G E A
Sbjct: 61 TRP-KGLR----------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1097 EFISSTEDGYDTYCGERGV------------------------QLSGGQKQRIALARAVL 1132
+ + E LSGG ++R+ALARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1133 KNPMILLLDEATSALD 1148
+ P +LLLDE T+ LD
Sbjct: 170 EEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 1e-19
Identities = 70/224 (31%), Positives = 105/224 (46%), Gaps = 35/224 (15%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KK 383
K VD P L+G SG GKST++ R + V+G + L G I
Sbjct: 21 KGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 384 LQLKWLRSQMGLVNQEPILFS-TSIKENILIG-------KPGASMETVV-----KAAQAA 430
+ +R ++G+V Q P F +I +N+ IG K ++ V KAA
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD 137
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
V D +LND + LSGGQ+QR+ IARAL PKILL+DE T+ +D
Sbjct: 138 EVKD---RLND--------YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTA 186
Query: 491 IVQEALDQASQGRTMIIIAHR-LSTIRKADLIGVLQSGRVIESG 533
++E L + + T++++ H R +D + L G++IE G
Sbjct: 187 KIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 33/230 (14%)
Query: 963 DPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTI 1022
D KA++ T+ + ++V Y ++ + L I A +G SG GKST
Sbjct: 5 DEKAADKKATATEIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTF 61
Query: 1023 IGLIERFYDP-----QSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIV 1075
+ + R D +G + +D +I ++ +LR+ + +V Q+P F +I +N+
Sbjct: 62 LRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVA 121
Query: 1076 YGK------------EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123
YG + E +RKA + + + E G LSGGQ+Q
Sbjct: 122 YGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL-----------HEPGTGLSGGQQQ 170
Query: 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
R+ +ARA+ +P ++L+DE SALD + V+E ++++ T V+V H
Sbjct: 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G SG GK+TV+ L+ F P G I+LDG I + + + V Q LF +
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMT 102
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+ EN+ G M+ A V + + ++L + + K Q LSGGQ+QR+AI
Sbjct: 103 VFENVAFG---LRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQ----LSGGQQQRVAI 155
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAH-RLSTIRKADLI 521
ARA++ PK+LLLDE+ SALD + + +Q L Q G T + + H + + +D I
Sbjct: 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215
Query: 522 GVLQSGRVIESGS 534
V++ GR+ + G+
Sbjct: 216 VVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 41/229 (17%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD--------ERNIK- 1045
+ GL + AG+ VAL+G SGSGKSTI+ ++ G + V+ RN
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1046 ----SYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIR-----KAAVLANA 1095
+LR++R+ I +V Q LF T+ N+ TEA + +A A
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNV-------TEAPVLVLGMARAEAEKRA 127
Query: 1096 HEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
E + D D QLSGGQ+QR+A+ARA+ P ++L DE TSALD
Sbjct: 128 MELLDMVGLADKADHM----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP---E 180
Query: 1154 LVQEALEKMM-----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
LV E L + T ++V H + ++ AD + G++VEQG
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 2e-19
Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-----SGSVMVDERNIKS 1046
D+ K + L ++ G AL+G SG GK+T + I R +D +G +++D ++I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1047 YNLR--KLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA-----------TEAEIRKAAVL 1092
+ +R + +V Q+P F ++ N+V G ++A E +R AA+
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
+ + + G LSGGQ+QR+ +ARA+ P ILL+DE TSALD AS
Sbjct: 136 DEVKDRLKTPATG-----------LSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+++ + + T ++V H + + +D G +VE G L +
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 27/237 (11%)
Query: 978 IELKNVFFSY-PSRPDQMIFKGLTLK-----IEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
I + V Y P F+ L I +G VA++G +GSGKST++ +
Sbjct: 3 ITFQKVEHRYQYKTP----FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ 58
Query: 1032 PQSGSVMVDERNI----KSYNLRKLRSCIALVSQ--EPTLFAGTIRQNIVYGKEV--ATE 1083
P SG+V + ER I K+ L+ LR + +V Q E LF T+ ++I +G +E
Sbjct: 59 PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
+ ++ A E + E+ +LSGGQ +R+A+A + P +L+LDE
Sbjct: 119 EDAKQKA--REMIELVGLPEE----LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 1144 TSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
T+ LD + E K+ G T V+V H + + AD IVV+ G V QGT
Sbjct: 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-19
Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 16/230 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+L V SY D+ + GL+ + +G+ L+G +G+GKSTI +I P +G +
Sbjct: 42 IDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQN-IVYGKEVATEA-EIRKAAVLAN 1094
V + + R R+ I +V Q L T+R+N +V+G+ EI AV+ +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIE--AVIPS 155
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
EF + E D R LSGG K+R+ LARA++ +P +L+LDE T+ LD + +L
Sbjct: 156 LLEF-ARLESKADA----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210
Query: 1155 VQEALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
+ E L ++ G+T ++ H + ++ D + V++ G+ + +G +L+
Sbjct: 211 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-19
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 41/247 (16%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I++ ++ D + G+ L + G V LVG +G+GK+T++ I P +G+
Sbjct: 3 MIDVSDLSVE---FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT 59
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVYGK--------------EVA 1081
V+V ++++ + R +A V Q+ +L F +RQ + G+ A
Sbjct: 60 VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA 119
Query: 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
E + + V A ++S LSGG++QR+ LARA+ + +LLLD
Sbjct: 120 VERAMERTGVAQFADRPVTS---------------LSGGERQRVLLARALAQATPVLLLD 164
Query: 1142 EATSALDSASE----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
E T++LD + LV+ ++ G+T V H L + D +V++ +G+V G
Sbjct: 165 EPTASLDINHQVRTLELVRRLVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
Query: 1197 TQSSLLS 1203
+ +L+
Sbjct: 222 PPADVLT 228
|
Length = 402 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--- 1034
+ KN+ Y + +T+ I + AL+G SG GKST++ R D
Sbjct: 7 LSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1035 --GSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAA 1090
G ++ + NI ++ LR I +V Q P F +I +N+ YG + E +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
+ ++ D + + LSGGQ+QR+ +AR + NP ++L+DE SALD
Sbjct: 124 TIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 1151 SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV-VIKNGKVVEQGTQSSLLS 1203
+ +++ +E + T ++V H + + + + GK++E + +
Sbjct: 184 ATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237
|
Length = 253 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 22/199 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
++G SG GKST I L R + V G IL I K ++ LR+ +G+V Q+P
Sbjct: 55 IIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114
Query: 401 ILFSTSIKENILIGKPGASM-------ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
F SI +N+ G + E V K+ + A + D +L D +G
Sbjct: 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---ELKDRLHDNA--YG-- 167
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL- 512
LSGGQ+QR+ IAR L +P ++L+DE TSALD S V+E + + + ++II+ H +
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQ 227
Query: 513 STIRKADLIGVLQSGRVIE 531
R +D +G V E
Sbjct: 228 QAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (219), Expect = 3e-19
Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 43/240 (17%)
Query: 328 IEFKDVDFSYPTRP----------DTPTIGLVGSSGSGKSTVISLLERFYD-----PVKG 372
I+ ++ F Y T+ + ++G SG GKST + L R + V+G
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67
Query: 373 NILLDGHKI--KKLQLKWLRSQMGLVNQEPILFSTSIKENILIG------KPGASMETVV 424
+ I +++ L LR Q+ +V+ +P LF S+ +N+ G +P ++ +V
Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127
Query: 425 KAA-QAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
++A + A++ D I + K+ + + LSGGQ+QR+ IARAL PK+LL+DE
Sbjct: 128 ESALKDADLWDEI-------KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
Query: 484 LD-AESERIVQEALDQASQGR---TMIIIAHRLSTI-RKADLIGVLQS-----GRVIESG 533
LD S ++ E+L Q+ + R TM+I++H L + R +D + G+++E G
Sbjct: 181 LDPIASMKV--ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238
|
Length = 261 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 3e-19
Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 967 SEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI 1026
+E ++ + I+++N+ Y ++ K ++++I AL+G SG GKST I +
Sbjct: 2 TEGVQNVAQPQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL 58
Query: 1027 ERFYD-----PQSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE 1079
R D G V ++ +I ++ +LR + +V Q+P F +I N+ YG
Sbjct: 59 NRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR 118
Query: 1080 V----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129
+ E +R AA+ + + S + LSGGQ+QR+ +AR
Sbjct: 119 IHGANKKDLDGVVENALRSAALWDETSDRLKSP-----------ALSLSGGQQQRLCIAR 167
Query: 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRL 1175
+ P I+L DE TSALD S +++ + + T V+V H +
Sbjct: 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 24/181 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQ 1033
+ +N+ SY R + ++L++ +G+ V L+G +G+GK+T I+GL+ P
Sbjct: 5 LVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR----PD 57
Query: 1034 SGSVMVDERNIKSYNL-RKLRSCIALVSQEPTLFAG-TIRQNI---VYGKEVATEAEIRK 1088
SG +++D+ +I + ++ R I + QE ++F T+ NI + +E + RK
Sbjct: 58 SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERK 117
Query: 1089 AAVLANAHEF-ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
+ A EF I+ D + LSGG+++R+ +ARA+ NP +LLDE + +
Sbjct: 118 EELDALLEEFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGV 170
Query: 1148 D 1148
D
Sbjct: 171 D 171
|
Length = 243 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 25/225 (11%)
Query: 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
IE +D+ +SY P I ++G +G+GKST+ P G++L+
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIG--KPGASMETVVKAAQAANV 432
G I K ++ +R +GLV Q P +FS +++++I G G ETV +A +
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA-L 122
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
H ++ L + +V LSGG+K+R+AIA + +P++L+LDE T+ LD + + +
Sbjct: 123 H--MLGLEE-LRDRVPH---HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 493 QEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ L+ + G T+I H+L + + AD I V+ GR++ G+
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 53/222 (23%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++NV + ++ +E G+ L+G +G+GK+T I +I P SG V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+ D + + R+ I + +E L+ + +VY +A ++K
Sbjct: 58 LFDGKPLDI----AARNRIGYLPEERGLYPKMKVIDQLVY---LAQLKGLKKEEARRRID 110
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
E++ E Y +R +LS G +Q++ AV+ +P +L+LDE S LD + L++
Sbjct: 111 EWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1157 EAL-EKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ + E G+T ++ H++ +++ D ++++ G+ V G
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 44/236 (18%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
LK + + K ++ +I G+ V ++G +G+GKST++ LI Y P SG
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 1037 VMVDERNIKSYNLRKLRSCIAL-VSQEPTLFAGTIRQNI-----VYGKEVATEAEIRKAA 1090
V V K+ I L +P L T R+NI + G T EI +
Sbjct: 84 VKVTG---------KVAPLIELGAGFDPEL---TGRENIYLRGLILG---LTRKEIDEKV 128
Query: 1091 --VLANAH--EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSA 1146
++ A +FI Y S G R+A + A P ILLLDE +
Sbjct: 129 DEIIEFAELGDFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAV 177
Query: 1147 LDSA----SENLVQEALEKMMVGRTCVVVAHRLSTIQKA-DNIVVIKNGKVVEQGT 1197
D+A + E +EK +T V+V+H L I++ D + +++G++ +G+
Sbjct: 178 GDAAFQEKCLERLNELVEK---NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 4e-19
Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 35/234 (14%)
Query: 328 IEFKDVDFSYPTRPDTPTIG-----------------LVGSSGSGKSTVISLLERFYDPV 370
I ++V ++Y + TP G +G +GSGKST++ LL + P
Sbjct: 3 INLQNVSYTY--QAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT 60
Query: 371 KGNILLDGHKI----KKLQLKWLRSQMGLVNQ--EPILFSTSIKENILIGKP--GASMET 422
+G++ +D I K +K +R ++GLV Q E LF ++ +++ G G S E
Sbjct: 61 QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE 120
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
A+ + L E+ + +LSGGQ +R+AIA L +PKIL+LDE T+
Sbjct: 121 AEALAREK------LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 483 ALDAESERIVQEALDQASQ-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
LD + + + + Q G T++++ H + + AD + VL+ G+++ SG
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 4e-19
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 8/216 (3%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---- 1051
K + L I + A++G SG GKST I + + E N N+ K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1052 ---LRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
LR I +V Q+ F +I N+ YG + +K + + D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
+ + LSGGQ+QR+ +ARA+ NP +LL+DE TSALD S ++E + K+ T
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTI 207
Query: 1169 VVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
V+V H + + +D G++VE + + S
Sbjct: 208 VIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 4e-19
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--- 1031
+ IE +N+ Y D + +KI AL+G SG GKST + + R D
Sbjct: 5 EAIIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVE 61
Query: 1032 --PQSGSVMVDERNIKS--YNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087
G+V+ + +NI S +++ +LR I +V Q P F +I NI YG ++ + +
Sbjct: 62 GIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKK 121
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
K + S+ + + LSGGQ+QR+ +AR + P ++L+DE TSAL
Sbjct: 122 KLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSAL 181
Query: 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
D S ++E + + T ++V H + + +D NG + E+ + L
Sbjct: 182 DPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 5e-19
Identities = 54/221 (24%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 985 FSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044
F + Q + G++ ++ G+ L+G +G+GK+T + ++ +P +G VD ++
Sbjct: 11 FRDVKKTVQAV-DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV 69
Query: 1045 KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVY-----G-KEVATEAEIRKAAVLANAHE 1097
+ R + VS L+ T R+N+ Y G K A + + A E
Sbjct: 70 -VKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE 128
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
+ R S G +Q++A+ARA++ +P +LLLDE T+ LD + ++E
Sbjct: 129 LLD-----------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1158 ALEKMMVGRTCVVVA-HRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ ++ C++ + H + +++ D +VV+ G+VV +G
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 5e-19
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 24/195 (12%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-ST 405
G +G +G+GK+T + ++ P G I DG +K ++G + + P + +
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--RRIGALIEAPGFYPNL 87
Query: 406 SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
+ +EN+ L+G ++ V+ ++ L D + KV F S G KQ
Sbjct: 88 TARENLRLLARLLGIRKKRIDEVLD----------VVGLKDSAKKKVKGF----SLGMKQ 133
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIAHRLSTIRK-A 518
R+ IA AL+ +P +L+LDE T+ LD + + ++E + QG T++I +H LS I+K A
Sbjct: 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVA 193
Query: 519 DLIGVLQSGRVIESG 533
D IG++ G++IE G
Sbjct: 194 DRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 6e-19
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 29/242 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I +N+ SY S + + G++L + G+ +A++G +G+GKST++ + P SG V
Sbjct: 2 IRAENL--SY-SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVYGK-------EVATEAEIRKA 1089
++ + S+ +L A++ Q +L F T+++ + G+ E + I
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR------AVLKNPMILLLDEA 1143
A+ A G LSGG++QR+ LAR + + L LDE
Sbjct: 119 ALAAT----------DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEP 168
Query: 1144 TSALDSA-SENLVQEALEKMMVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSL 1201
TSALD A + ++ A + G + V H L+ Q AD IV++ G+V+ G+ +
Sbjct: 169 TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228
Query: 1202 LS 1203
L+
Sbjct: 229 LT 230
|
Length = 259 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-19
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 26/211 (12%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDP----VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
+ LVG SGSGKS + P G ILLDG + L ++ + + Q P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR--HIATIMQNPR 72
Query: 402 -----LFS--TSIKENILI-GKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
LF+ E + GK + +++A +A + D E + ++
Sbjct: 73 TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD--------PEEVLKKYPF 124
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAH 510
QLSGG QR+ IA AL+ +P L+ DE T+ LD ++ V + L + G +++I H
Sbjct: 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
Query: 511 RLSTI-RKADLIGVLQSGRVIESGSHDVLMQ 540
L + R AD + V+ GR++E G+ +
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGTVKEIFY 215
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 7e-19
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 26/229 (11%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
S ++I G+ + G L+G +GSGKST++ L+ P +G+V + ++ +
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 1049 LRKLRSC-IALVSQE-PTLFAGTIRQNIVYGK---------EVATEAEI-RKAAVLANAH 1096
R+ R+ +ALV Q+ T T+R + G+ + +A + +A
Sbjct: 70 -RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS 128
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
T LSGG++QR+ +ARA+ + P +LLLDE T+ LD ++
Sbjct: 129 HLADRD---MST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 1157 EALEKMMVGRTCVVVA-HRLS-TIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ ++ VV A H L+ D++VV+ G+VV G +L+
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 8e-19
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 14/203 (6%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
++L ++ G+ +G +G+GK+T + +I P SG + D ++ + N+ LR
Sbjct: 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK-NIEALRRIG 75
Query: 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115
AL+ P + T R+N+ A IRK + E + G ++
Sbjct: 76 ALIE-APGFYPNLTARENLRLL---ARLLGIRKKRI----DEVLD--VVGLKDSAKKKVK 125
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHR 1174
S G KQR+ +A A+L NP +L+LDE T+ LD ++E + + G T ++ +H
Sbjct: 126 GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185
Query: 1175 LSTIQK-ADNIVVIKNGKVVEQG 1196
LS IQK AD I +I GK++E+G
Sbjct: 186 LSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-19
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 76/217 (35%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IEL+N+ +Y + + K ++L I G + LVG++G+GKST++
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLL-------------- 43
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++ G+ E + + + +
Sbjct: 44 -----------------------------------KLIAGELEPDEGIVTWGSTVKIGY- 67
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
++ QLSGG+K R+ALA+ +L+NP +LLLDE T+ LD S E
Sbjct: 68 --------FE--------QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IE 107
Query: 1158 ALEKMMVG--RTCVVVAHRLSTIQK-ADNIVVIKNGK 1191
ALE+ + T ++V+H + + A I+ +++GK
Sbjct: 108 ALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 9e-19
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 11/217 (5%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--K 382
K+++ S P T ++G SG GKST I L + G + +G I
Sbjct: 28 LKNINLSIPENEVT---AIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84
Query: 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDG 442
K+ L LR +G+V Q+ F SI +N+ G + K + + L D
Sbjct: 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG 502
+ ++ + LSGGQ+QR+ IARAL +P +LL+DE TSALD S R ++E + + +
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204
Query: 503 RTMIIIAHRL-STIRKADLIGVLQSGRVIESGSHDVL 538
T++I+ H + R +D G ++E + +
Sbjct: 205 YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241
|
Length = 259 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-18
Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--PQS---GSVMVDERNIKSYNLR- 1050
++L+ E + AL+G SG GKST + + R D P + G +++D NI ++
Sbjct: 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82
Query: 1051 -KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTE-----D 1104
+LR + +V Q+P F +I +N+ YG V ++ A LA E S D
Sbjct: 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNG---VKDKAYLAERVE--RSLRHAALWD 137
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164
E + LSGGQ+QR+ +ARA+ P +LL+DE SALD + ++E + ++
Sbjct: 138 EVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA 197
Query: 1165 GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
T ++V H + + +D GK++E G + +
Sbjct: 198 RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237
|
Length = 253 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-18
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 9/185 (4%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
I + G SG GKST++ ++ P G +L +G + L+ + R Q+ Q P LF
Sbjct: 32 IAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
++++N++ + AA D + + ++ + + +LSGG+KQRIA+
Sbjct: 92 TVEDNLIFPWQIRNRRPDRAAAL-----DLLARFALP-DSILTKNITELSGGEKQRIALI 145
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAH-RLSTIRKADLIG 522
R L PKILLLDE TSALD ++R ++E + + Q ++ I H + IR AD +
Sbjct: 146 RNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVI 205
Query: 523 VLQSG 527
LQ G
Sbjct: 206 TLQPG 210
|
Length = 223 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 350 GSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409
G SG GKST++ ++ P G +L +G I L+ + R Q+ Q P LF ++ +
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99
Query: 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI 469
N++ + + A D + + +T + + +LSGG+KQRI++ R L
Sbjct: 100 NLIF-----PWQIRNQQPDPAIFLDDLERFALP-DTILTKNIAELSGGEKQRISLIRNLQ 153
Query: 470 RDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTIRKADLIGVLQS 526
PK+LLLDE TSALD ++ V E + + Q ++ + H I AD + LQ
Sbjct: 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQP 212
|
Length = 225 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 14/226 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +++ +SY + + +A++G +G+GKST+ P SGSV
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKEVATEAEIRKAAVLANA 1095
++ I N+R++R + LV Q P +F+ T+ Q+I +G + + V A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG---PINLGLDEETV---A 115
Query: 1096 HEFISSTED-GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
H S+ G + LSGG+K+R+A+A + P +L+LDE T+ LD
Sbjct: 116 HRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 1155 VQEALEKMMV--GRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
+ + L + G T + H+L + + AD I V+ G++V GT
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 36/225 (16%)
Query: 994 MIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNI---KS 1046
I +G++L++ G+ ++G++G GK+T ++GL+ +SGS+ +D +I
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL----PVKSGSIRLDGEDITKLPP 69
Query: 1047 YNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDG 1105
+ + R+ IA V Q +F T+ +N++ G A L I ++
Sbjct: 70 H--ERARAGIAYVPQGREIFPRLTVEENLLTG-----------LAALPRRSRKIP--DEI 114
Query: 1106 YDTY------CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
Y+ + G RG LSGGQ+Q++A+ARA++ P +LLLDE T + + + +
Sbjct: 115 YELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI 174
Query: 1160 EKM--MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSL 1201
++ G ++V L + AD V++ G+VV G L
Sbjct: 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-18
Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 31/219 (14%)
Query: 334 DFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG---HKIKKLQLKWLR 390
+ S+ RP T+GLVG SGSGKST L R +G I DG H + + QL +R
Sbjct: 304 NISFTLRPGE-TLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVR 361
Query: 391 SQMGLVNQEP-------ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGY 443
++ +V Q+P + I+E + + +P S A + V + ++
Sbjct: 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLS-----AAQREQQVIAVMEEVGLDP 416
Query: 444 ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE---ALDQAS 500
ET+ ++ + SGGQ+QRIAIARALI P +++LDE TS+LD + VQ AL ++
Sbjct: 417 ETR-HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSL 471
Query: 501 QGR---TMIIIAHRLSTIRKA--DLIGVLQSGRVIESGS 534
Q + + I+H L +R +I VL+ G V+E G
Sbjct: 472 QQKHQLAYLFISHDLHVVRALCHQVI-VLRQGEVVEQGD 509
|
Length = 529 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 2e-18
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 28/245 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---- 1033
I++K++ F Y + +G+++ I K A++G SG GKST I + R + +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1034 -SGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEA------ 1084
G V +NI N+ +LR I +V Q P F +I +N+ YG ++ +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 1085 EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
EI ++A+ A +D + + + LSGGQ+QR+ +ARA+ P +LL+DE
Sbjct: 125 EIVESALKGAA--LWQEVKDKLN----KSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 1145 SALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI------KNGKVVEQGTQ 1198
SALD + V+E + + T +V H + + + + G++VE G
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 1199 SSLLS 1203
+ + S
Sbjct: 239 TQIFS 243
|
Length = 259 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 47/191 (24%), Positives = 98/191 (51%), Gaps = 14/191 (7%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-ST 405
GL+G +G+GK+T I ++ P G +L DG + R+++G + +E L+
Sbjct: 30 GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA----RNRIGYLPEERGLYPKM 85
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLN-DGYETKVGQFGVQLSGGQKQRIAI 464
+ + ++ A ++ + K + +++ +L Y K + +LS G +Q++
Sbjct: 86 KVIDQLVYL---AQLKGLKKEEARRRIDEWLERLELSEYANKRVE---ELSKGNQQKVQF 139
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIAHRLSTI-RKADLIG 522
A+I DP++L+LDE S LD + ++++ + + A G+T+I+ H++ + D +
Sbjct: 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL 199
Query: 523 VLQSGRVIESG 533
+L GR + G
Sbjct: 200 LLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (212), Expect = 2e-18
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 8/200 (4%)
Query: 347 GLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKI--KKLQLKWLRSQMGLVNQE 399
L+G SG GKST + L R D ++GN++ +G I + LR ++G+V Q
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96
Query: 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
P F SI +NI G + K + L + + K+ + LSGGQ+
Sbjct: 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156
Query: 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI-RKA 518
QR+ IAR L +P ++L+DE TSALD S ++E + + T+II+ H + R +
Sbjct: 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRIS 216
Query: 519 DLIGVLQSGRVIESGSHDVL 538
D +G + E S D L
Sbjct: 217 DRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 9/206 (4%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
VD + P T GL+G +GSGKST++ LL P G + L G + L +
Sbjct: 19 GVDVTAPPGSLT---GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 392 QMGLVNQE-PILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449
++ LV Q+ ++++ + +G+ P S+ AA V + + +
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADR 133
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMIII 508
LSGG++QR+ +ARAL ++PK+LLLDE T+ LD ++ + + A+ G T++
Sbjct: 134 DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAA 193
Query: 509 AHRLS-TIRKADLIGVLQSGRVIESG 533
H L+ D + VL GRV+ +G
Sbjct: 194 LHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN- 1048
Q + ++L +++G+TVAL+G+SG GKST+ L+ P G+V + N
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 1049 --LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE-----AEIRKAAVLANAHEFISS 1101
+ R I +V Q+ + A R+ + +E+ E + KA LA A E + +
Sbjct: 82 AQRKAFRRDIQMVFQDS-ISAVNPRKTV---REIIREPLRHLLSLDKAERLARASEMLRA 137
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
D D+ +R QLSGGQ QR+ LARA+ P +L+LDEA S LD + V L+K
Sbjct: 138 V-DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196
Query: 1162 MM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204
+ G C+ + H L +++ ++V+ NG++VE L+
Sbjct: 197 LQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF 242
|
Length = 268 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 71/250 (28%), Positives = 112/250 (44%), Gaps = 57/250 (22%)
Query: 978 IELKNVFFSYPS-------------------RPDQMIFKGLTLKIEAGKTVALVGQSGSG 1018
IEL+NV SYP+ + K ++ ++ G+ + L+G++G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1019 KSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL-VSQEPTLFAGTIRQNI--- 1074
KST++ L+ Y P SG+V V ++ S + L P L T R+NI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVR---------GRVSSLLGLGGGFNPEL---TGRENIYLN 108
Query: 1075 --VYGKEVATEAEIRKAAVLANAHEFISSTEDGYD----TYCGERGVQLSGGQKQRIALA 1128
+ G + EI + EF S D D TY S G K R+A A
Sbjct: 109 GRLLGL---SRKEID--EKIDEIIEF-SELGDFIDLPVKTY--------SSGMKARLAFA 154
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEAL-EKMMVGRTCVVVAHRLSTIQK-ADNIVV 1186
A P ILL+DE + D+A + Q L E + G+T ++V+H S+I++ D +V
Sbjct: 155 IATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALV 214
Query: 1187 IKNGKVVEQG 1196
++ GK+ G
Sbjct: 215 LEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
G+ K+ G+ +G +G+GK+T I ++ P SG+ V ++ RK+R I
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSI 68
Query: 1057 ALVSQEPTLFAG-TIRQNIV-----YGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYC 1110
+V Q ++ T R+N+ YG EAE R +L E E D
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKD-EAEERAEELL----ELFELGEAA-DRPV 122
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCV 1169
G SGG ++R+ +A +++ P +L LDE T+ LD + + + + + G T +
Sbjct: 123 G----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 1170 VVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
+ H + K D I +I +G+++ +GT L
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 54/214 (25%), Positives = 107/214 (50%), Gaps = 21/214 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSYNLRK 1051
I ++L +E+G+ +A++G SGSGK+T++ I + SG ++ + + K +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD---Q 78
Query: 1052 LRSCIALVSQEPTLFAG-TIRQNIVY-----GKEVATEAEIRKAAVLANAHEFISSTEDG 1105
+ C+A V Q+ L G T+R+ + Y +++A +K E + +
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV------EDVLLRDLA 132
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV- 1164
G +SGG+++R+++A +L +P +L+LDE TS LDS + + L ++
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 1165 GRTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
R ++ H R + D I+++ +G++V G
Sbjct: 193 NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (212), Expect = 3e-18
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 7/218 (3%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSY 1047
+ + +++ A +L+G +GSGK+T + + R D SG V++ R+I +Y
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 1048 -NLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGY 1106
++ + R + ++ Q P F +I N++ G ++ +A A D
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166
+ +LSGGQ+Q + LAR + NP +LLLDE TSALD + ++E + +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 1167 TCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
T ++V H L+ + +D + +G++VE+G L S
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 3e-18
Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 9/201 (4%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ-EPILFST 405
GL+G +G+GKST+ +L P +G I + G + + + R +G+V Q + +
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLDPEF 92
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
+++EN+L+ M T A ++ +F +L + +V LSGG K+R+ +A
Sbjct: 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEF-ARLESKADVRVAL----LSGGMKRRLTLA 147
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI-RKADLIGV 523
RALI DP++L+LDE T+ LD + ++ E L ++G+T+++ H + R D + V
Sbjct: 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 207
Query: 524 LQSGRVIESGSHDVLMQMNNG 544
L+SGR I G L+ G
Sbjct: 208 LESGRKIAEGRPHALIDEQIG 228
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 3e-18
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 21/244 (8%)
Query: 973 PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD- 1031
PT+ E+ + F Y K + + + + AL+G SG GKST + R +D
Sbjct: 12 PTQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL 68
Query: 1032 -PQS---GSVMV--DERNIKSYNLR--KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE 1083
P + G +++ D NI S + ++R I++V Q+P F +I +N+ YG +
Sbjct: 69 YPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRG- 127
Query: 1084 AEIRKAAVL----ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
+++ ++L NA + ++ D G+ LSGGQ+QR+ +ARA+ +P ILL
Sbjct: 128 --VKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILL 184
Query: 1140 LDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
DE TSALD + ++E + + T ++V H + + +D + G+++E G
Sbjct: 185 FDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
Query: 1199 SSLL 1202
++
Sbjct: 245 DTIF 248
|
Length = 265 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 23/207 (11%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE-PILFST 405
++G +G+GKST++ L P G + L+G + + L ++ Q + F
Sbjct: 31 AILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90
Query: 406 SIKENILIG-----KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
+++E + +G E AAQA D G G+ LSGG++Q
Sbjct: 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-----SGLA---GRDYRTLSGGEQQ 142
Query: 461 RIAIARAL------IRDPKILLLDEATSALD-AESERIVQEALDQASQGRTMIIIAHRLS 513
R+ +AR L + + L LDE TSALD A ++ A A +G ++ + H L+
Sbjct: 143 RVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN 202
Query: 514 -TIRKADLIGVLQSGRVIESGS-HDVL 538
+ AD I +L GRVI SGS DVL
Sbjct: 203 LAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 32/219 (14%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ----SGSVMVDERNIKSYNLRKLR 1053
L L ++ G+ +ALVG+SGSGKS I P SG +++D R + ++R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 1054 SCIALVSQEP-----------TLFAGTIRQ-NIVYGKEVATEAEIRKAAVLANAHEFISS 1101
IA + Q P T+R + + A E +A L + E +
Sbjct: 64 --IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
QLSGG QR+ +A A+L P L+ DE T+ LD ++ V + L +
Sbjct: 122 YP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1162 MM--VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
+ G +++ H L + + AD + V+ +G++VE+GT
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 24/205 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG--LVNQEPILF-S 404
L+G +G+GKST++ ++ P G + + G+ +L Q+G LV QEP+LF +
Sbjct: 42 LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAHQLGIYLVPQEPLLFPN 100
Query: 405 TSIKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
S+KENIL G K ASM+ + + A + L ++ G V +Q +
Sbjct: 101 LSVKENILFGLPKRQASMQKMKQLLAALGCQ---LDL----DSSAGSLEV----ADRQIV 149
Query: 463 AIARALIRDPKILLLDEATSALD-AESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADL 520
I R L+RD +IL+LDE T++L AE+ER+ + +QG ++ I+H+L IR+ AD
Sbjct: 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR 209
Query: 521 IGVLQSGRVIESG-----SHDVLMQ 540
I V++ G + SG S D ++Q
Sbjct: 210 ISVMRDGTIALSGKTADLSTDDIIQ 234
|
Length = 510 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 3e-18
Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 24/236 (10%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
K F+ LKN+ + S + L L I+ G V L+G SG GK+T++ L+ P
Sbjct: 4 KNFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG-KEVATEAEIRKAAVL 1092
G + +D ++ ++++ C+ V Q LF ++ +N+ YG K + E RK V
Sbjct: 61 GQIFIDGEDVTHRSIQQRDICM--VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV- 117
Query: 1093 ANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A E + G+ +R V Q+SGGQ+QR+ALARA++ P +LL DE S LD+
Sbjct: 118 KEALELVDL--AGF----EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA-- 169
Query: 1152 ENLVQEALEKM-----MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSL 1201
NL + EK+ T + V H S +D ++V+ GK+++ G+ L
Sbjct: 170 -NLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-18
Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 34/236 (14%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKS----TIIGLI-ERFYDPQSGSVMVDERNI-- 1044
KG++ IEAG+T+ALVG+SGSGKS +I+GL+ SGS++ D ++
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 1045 -KSYNLRKLRSC-IALVSQEPT-----LFAGTIRQNIVYGKEV-----ATEAEIRKAAVL 1092
LR +R I ++ QEP L TI + + + A R +L
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLH--TIGKQLAEVLRLHRGLSRAAARARALELL 139
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
I E D Y +LSGGQ+QR+ +A A+ P +L+ DE T+ALD +
Sbjct: 140 ELVG--IPEPEKRLDAY----PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQ 193
Query: 1153 ----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+L++E ++ G + + H L ++K AD + V+++G++VE GT +L +
Sbjct: 194 AQILDLLKELQAEL--GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 24/202 (11%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQEPI 401
T+ L+G SG GKST+ LL P +GN+ G + KL Q K R + +V Q+ I
Sbjct: 40 TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSI 99
Query: 402 LF---STSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSG 456
+++E +I +P + ++ KA + A + + + L+D K QLSG
Sbjct: 100 SAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPP---QLSG 154
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ-EALD-----QASQGRTMIIIAH 510
GQ QR+ +ARAL +PK+L+LDEA S LD ++Q + Q G + I H
Sbjct: 155 GQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQAGVIRLLKKLQQQFGTACLFITH 210
Query: 511 RLSTIRK-ADLIGVLQSGRVIE 531
L + + + V+ +G+++E
Sbjct: 211 DLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 21/219 (9%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI--KSYNLRKLRS 1054
K ++ + G+T+A++G++GSGKST+ ++ +P SG +++++ + Y+ R R
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR- 88
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANA--HEFISSTEDG---YDTY 1109
I ++ Q+P + R I + +R L + I T +
Sbjct: 89 -IRMIFQDPNT-SLNPRLRI----GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDH 142
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE----NLVQEALEKMMVG 1165
L+ GQKQR+ALARA++ P I++ DEA ++LD + NL+ E EK G
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQ--G 200
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ + V + I+ +D ++V+ G+VVE+G+ + +L+
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 20/240 (8%)
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
FF + GL+L+I G V ++G +G+GKST++ I P SG +++
Sbjct: 7 ATKTFFKGTPLEKR-ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILI 65
Query: 1040 DERNIKSYNLRKLRSCIALVSQEP---TLFAGTIRQNIV--------YGKEVATEAEIRK 1088
D ++ ++ K + +A V Q+P T TI +N+ G A R
Sbjct: 66 DGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS 125
Query: 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
+ E ++ G + +R LSGGQ+Q ++L A L P ILLLDE T+ALD
Sbjct: 126 SFR-----ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1149 SASENLVQEALEKMMVGR--TCVVVAHRL-STIQKADNIVVIKNGKVVEQGTQSSLLSMG 1205
+ V E K++ T ++V H + + + ++++ +GK+V T S+
Sbjct: 181 PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLT 240
|
Length = 263 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 5e-18
Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 3/231 (1%)
Query: 973 PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032
P+ G ++++ + Y + + + L+ +E G+ V L+G++GSGKST++ + R
Sbjct: 1213 PSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST 1271
Query: 1033 QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL 1092
+ G + +D + S L+ R ++ Q+ +F+GT R+N+ ++ + E EI K A
Sbjct: 1272 E-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDE-EIWKVAEE 1329
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
I D D + G LS G KQ + LAR++L ILLLDE ++ LD +
Sbjct: 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
++++ L++ T ++ HR+ + + +VI+ V + + LL+
Sbjct: 1390 QIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 5e-18
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 37/235 (15%)
Query: 328 IEFKDVDFSYPTRPDTPT-----------------IGLVGSSGSGKSTVISLLERFYDPV 370
I+F++VD+ Y P TP + LVG +GSGKST++ P
Sbjct: 3 IKFENVDYIYS--PGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 371 KGNILLDGHKIK----KLQLKWLRSQMGLVNQ--EPILFSTSIKENILIGKP--GASMET 422
G I + G+ I LK LR ++ LV Q E LF ++ +++ G G S +
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED- 119
Query: 423 VVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481
+A + A ++ K+ G + + +LSGGQ +R+AIA + +P+IL LDE
Sbjct: 120 --EAKEKA--LKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 482 SALDAES-ERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ LD E + ++Q D G T+I++ H + + + AD + VL+ G++I+ S
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAS 228
|
Length = 287 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 5e-18
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 18/241 (7%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGL---TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032
I L NV ++Y ++ FK L +L + K ++G +GSGKST+I L
Sbjct: 5 KDIILDNVSYTY-AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1033 QSGSVMVDERNI-----KSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKEVATEAE 1085
++G +V + I K +++LR I LV Q P LF TI ++I +G E +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
+ + + ED Y +LSGGQK+R+ALA + + L+LDE T
Sbjct: 124 QEAYKKVPELLKLVQLPED----YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179
Query: 1146 ALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
LD E E++ + ++V H + + + AD ++V+ GKV+ G+ +
Sbjct: 180 GLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
Query: 1203 S 1203
S
Sbjct: 240 S 240
|
Length = 289 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-18
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 346 IGLVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL 402
+ L+G SG GK+T +I+ LER G I G I +L + + G+V Q L
Sbjct: 33 VCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYAL 87
Query: 403 F-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
F + ++ +NI G M A + A + D + G ++ QLSGGQ+QR
Sbjct: 88 FPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERKYPGQLSGGQQQR 142
Query: 462 IAIARALIRDPKILLLDEATSALDA-ESERIVQEALD-QASQGRTMIIIAH----RLSTI 515
+A+ARAL P +LLLDE SALDA E + E Q G T I++ H LS
Sbjct: 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSM- 201
Query: 516 RKADLIGVLQSGRVIESGS 534
AD I V+ G + + G+
Sbjct: 202 --ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 7e-18
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 34/252 (13%)
Query: 955 RKSEIDPEDPKASEDIEEPTKG------FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008
R +E P + P G +E +NV Y +++ K L+ +I+ G
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD--GGRLLLKDLSFRIDRGDR 350
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQE-PTLFA 1067
+A+VG +G+GKST++ L+ P SG+V ++ I Q L
Sbjct: 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTV------KVGETVK-----IGYFDQHRDELDP 399
Query: 1068 G-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126
T+ + + G E E+R A F + ED + LSGG+K R+
Sbjct: 400 DKTVLEELSEGFPDGDEQEVR-----AYLGRFGFTGEDQE-----KPVGVLSGGEKARLL 449
Query: 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIV 1185
LA+ +L+ P +LLLDE T+ LD S ++EAL G T ++V+H + + A I
Sbjct: 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-G-TVLLVSHDRYFLDRVATRIW 507
Query: 1186 VIKNGKVVEQGT 1197
++++ +G
Sbjct: 508 LVEDKVEEFEGG 519
|
Length = 530 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 8e-18
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 28/221 (12%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055
++L++ G+ V L+G +G+GK+T+ LI FY P SG+V+ R+I ++ R
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 1056 IALVSQEPTLFAG-TIRQNIV--------------YGKEVATEAEIRKAAVLANAHEFIS 1100
IA Q LF G T+ +N+ + E E R+ A EF+
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV- 137
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL-DSASENLVQEAL 1159
G LS GQ++R+ +ARA+ P +LLLDE + L +E L E +
Sbjct: 138 ----GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELI 192
Query: 1160 EKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
++ G T +++ H + + AD IVV+ G+V+ +GT
Sbjct: 193 RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-18
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 32/224 (14%)
Query: 326 GEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL 384
G+I+ + V + L+G +G+GK+T++ + P G I+ DG I L
Sbjct: 14 GKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70
Query: 385 QL-KWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDG 442
+ R + V + +F +++EN+L+G A + L +
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENLLLG-----------AYARRDKEAQERDLEEV 119
Query: 443 YE------TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
YE + Q LSGG++Q +AIARAL+ PK+LLLDE + L + +IV+E
Sbjct: 120 YELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIF 176
Query: 497 DQ-----ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ G T++++ + AD VL++GR++ SG+
Sbjct: 177 EAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 9e-18
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 30/213 (14%)
Query: 1010 ALVGQSGSGKSTIIGLIERFYD--PQ---SGSVMVDERNI--KSYNLRKLRSCIALVSQE 1062
A++G SG GKST + I R D P +G++M D +I K + LR I +V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 1063 PTLFAGTIRQNIVYGKEV-----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
P F +I NI YG + E +RKAA+ + + G
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALG------ 182
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVV 1171
LSGGQ+QR+ +AR + P ILLLDE TSALD + +++ ++++ T ++V
Sbjct: 183 -----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIV 237
Query: 1172 AHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
H + + +D + G +VE + L +
Sbjct: 238 THNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT 270
|
Length = 286 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-17
Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 29/232 (12%)
Query: 328 IEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNI 374
I K+ FS+ ++ + PT + +VGS+G GK+++IS + P
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS--- 671
Query: 375 LLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHD 434
D + +R + V Q +F+ ++++NIL G P E +A +
Sbjct: 672 --DASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSPFDP-ERYERAIDVTALQH 721
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV-Q 493
+ L G T++G+ GV +SGGQKQR+++ARA+ + + + D+ SALDA R V
Sbjct: 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
Query: 494 EALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGE 545
+ + +G+T +++ ++L + + D I ++ G + E G+++ L NNG
Sbjct: 782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL--SNNGP 831
|
Length = 1622 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 67/204 (32%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDG--HKIKKLQLKWLRSQMGLVNQEPILF 403
+ ++G SG+GKST+++L+ F P G++ L+G H R + ++ QE LF
Sbjct: 28 VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS----RRPVSMLFQENNLF 83
Query: 404 S-TSIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
S ++ +NI +G PG + AAQ +H ++ G E + + QLSGGQ+QR
Sbjct: 84 SHLTVAQNIGLGLNPGLKLN----AAQREKLHAIARQM--GIEDLLARLPGQLSGGQRQR 137
Query: 462 IAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIAHRLS-TIR 516
+A+AR L+R+ ILLLDE SALD E +V + + + T+++++H L R
Sbjct: 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAAR 195
Query: 517 KADLIGVLQSGRVIESGSHDVLMQ 540
A V+ GR+ G D L+
Sbjct: 196 IAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 1e-17
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 16/198 (8%)
Query: 348 LVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
L+G SG GKST + + R D + +G IL +G I + + LR ++G+V Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 401 ILFSTSIKENIL--IGKPGASMETVVKAAQAANVHDFIMK--LNDGYETKVGQFGVQLSG 456
F SI NI + G ++V+ V + + K L D + ++ + LSG
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEI----VEESLTKAALWDEVKDRLHSSALSLSG 167
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL-STI 515
GQ+QR+ IAR L P +LLLDE SALD S ++E + + + ++II+ H + +
Sbjct: 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQAL 227
Query: 516 RKADLIGVLQSGRVIESG 533
R +D +G ++E
Sbjct: 228 RVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 331 KDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380
++V F P R P GL+G +GSGKST++ +L R P +G ILLD
Sbjct: 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74
Query: 381 IKKLQLKWLRSQMG-LVNQEPILFSTSIKENILIGK----------PGASMETVVKAAQA 429
++ K ++ L Q P +++E + IG+ A E V +A
Sbjct: 75 LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL 134
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ +L D LSGG++QR IA + +D + LLLDE TSALD +
Sbjct: 135 VGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183
Query: 490 RIVQEALDQASQGRTMIIIA--HRLS-TIRKADLIGVLQSGRVIESGSHDVLMQ 540
V + + SQ R + +IA H ++ R D + L+ G +I G+ LM+
Sbjct: 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-17
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 48/218 (22%)
Query: 328 IEFKDVDFSYPTRP--DTPT--------IGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
I +++ +Y RP + + IGLVG +G+GKST++ +L +P G +
Sbjct: 4 ITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP 63
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIG-KPGASMETVVKAAQAANVHDF 435
++G ++QEP L ++ + ++ G + ++ A A
Sbjct: 64 KGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPD 112
Query: 436 IMKLN---------DGY------ETKVGQFGV--------QLSGGQKQRIAIARALIRDP 472
L DG+ E + G LSGG ++R+A+ARAL+ +P
Sbjct: 113 DELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEP 172
Query: 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
+LLLDE T+ LD ES +++ L + G T+I+++H
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYL-KRYPG-TVIVVSH 208
|
Length = 530 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 14/186 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+++ +++ Y +P + + L +E+G+ + ++G SG GK+T++ LI F Q GS+
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+D + ++ + +V Q L ++ N+ +G ++A + K L AH
Sbjct: 59 TLDGKPVEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAH 110
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+ + G + QLSGGQ+QR+ +ARA+ NP +LLLDE ALD+ + +Q
Sbjct: 111 QMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 1157 EALEKM 1162
L K+
Sbjct: 169 TLLLKL 174
|
Length = 255 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
P D ++ I L+N+ P Q + L ++ G+ + + G+SG+GK+
Sbjct: 376 PARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKT 433
Query: 1021 TIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVY--GK 1078
+++ + + SG + S + + Q P L GT+R+ + Y
Sbjct: 434 SLLRALAGLWPWGSGRIS-----------MPADSALLFLPQRPYLPQGTLREALCYPNAA 482
Query: 1079 EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138
++AE+ + ++ LSGG++QR+A AR +L P +
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERLDEEDRW-----DRVLSGGEQQRLAFARLLLHKPKWV 537
Query: 1139 LLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174
LDEATSALD +E+ + + L++ + T + V HR
Sbjct: 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 54/199 (27%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IEL+N+ S + +++ K L+ +I+ G + + G SG+GKS++ + + SG +
Sbjct: 1 IELENL--SLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVY--GKEVATEAEIRKAAVLANA 1095
+ E + + Q P L GT+R+ ++Y
Sbjct: 59 GMPEGE-----------DLLFLPQRPYLPLGTLREQLIYPWDDV---------------- 91
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
LSGG++QR+A AR +L P + LDEATSALD SE+ +
Sbjct: 92 ---------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
Query: 1156 QEALEKMMVGRTCVVVAHR 1174
+ L+++ + T + V HR
Sbjct: 131 YQLLKELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 37/224 (16%)
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
L V Y R + L L I AG+ VA+VG+SG GKST++ L+ P +G ++
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 1040 DERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYG-----KEVATEAEIRKAAV-L 1092
+ L + R L+ Q+ L + N+ G ++ A +A AAV L
Sbjct: 72 G-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA---LAAVGL 123
Query: 1093 AN-AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A+ A+E+ ++ LSGGQKQR+ALARA++ P +LLLDE ALD+ +
Sbjct: 124 ADRANEWPAA---------------LSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 1152 ENLVQEALEKMMV--GRTCVVVAHRLS-TIQKADNIVVIKNGKV 1192
+Q+ +E + G T ++V H +S + AD +++I+ GK+
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
G +G +G+GK+T I +L P G + G+ + + + + +R +G+V Q +
Sbjct: 22 FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDED 80
Query: 406 -SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
+ +EN+ L G P E +A + + +L + + VG + SGG +
Sbjct: 81 LTGRENLEMMGRLYGLPKDEAE-----ERAEELLELF-ELGEAADRPVGTY----SGGMR 130
Query: 460 QRIAIARALIRDPKILLLDEATSALDAESERIV-QEALDQASQGRTMIIIAHRLSTIRK- 517
+R+ IA +LI P +L LDE T+ LD + R + +G T+++ H + K
Sbjct: 131 RRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL 190
Query: 518 ADLIGVLQSGRVIESGS 534
D I ++ GR+I G+
Sbjct: 191 CDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 2e-17
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 18/218 (8%)
Query: 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI----KKL 384
EFK ++ + T ++G++GSGKST+I L G ++ + I KK+
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 385 -QLKWLRSQMGLVNQEP--ILFSTSIKENILIG--KPGASMETVVKAAQAANVHDFIMKL 439
++K LR ++GLV Q P LF +I+++I G G + + K ++KL
Sbjct: 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPE------LLKL 136
Query: 440 NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ- 498
E V + +LSGGQK+R+A+A + D L+LDE T LD + E ++
Sbjct: 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 499 -ASQGRTMIIIAHRLSTI-RKADLIGVLQSGRVIESGS 534
+ +I++ H + + R AD + V+ G+VI GS
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 2e-17
Identities = 68/232 (29%), Positives = 126/232 (54%), Gaps = 20/232 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+ +NV Y D+++ GL+ ++ G+ L+G +G+GK+T + ++ P +GS+
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL---FAGTIRQNI-VYGKEVA-TEAEIRKAAVL 1092
+ + S R R + +V Q L F T+R+N+ V+G+ + A R A++
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAAR--ALV 119
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
EF + E+ D GE LSGG K+R+ LARA++ +P +L+LDE T+ LD +
Sbjct: 120 PPLLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174
Query: 1153 NLVQEALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
+L+ E L ++ G+T ++ H + ++ D + VI+ G+ + +G +L+
Sbjct: 175 HLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 29/209 (13%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL--VNQEPILF 403
+GL+G +G+GK+T ++ P G ILLDG I KL + R+++G+ + QE +F
Sbjct: 29 VGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRARLGIGYLPQEASIF 87
Query: 404 -STSIKENIL-----IGKPGASMETVVKAAQAANVHDF-IMKLNDGYETKVGQFGVQLSG 456
+++ENIL G E ++ + +F I L LSG
Sbjct: 88 RKLTVEENILAVLEIRGLSKKEREEKLEEL----LEEFHITHLRK-------SKASSLSG 136
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIAHRL 512
G+++R+ IARAL +PK LLLDE + +D + ++I++ D +G ++I H +
Sbjct: 137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNV 193
Query: 513 S-TIRKADLIGVLQSGRVIESGSHDVLMQ 540
T+ D ++ G+V+ G+ + +
Sbjct: 194 RETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 3e-17
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 9/206 (4%)
Query: 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385
G +++ FS +GL+G +GSGKST++S R + +G+I +DG +
Sbjct: 16 GNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP 71
Query: 386 LKWLRSQMGLVNQEPILFSTSIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGY 443
L+ R G++ Q+ +FS + ++N+ P S E + K A+ + I +
Sbjct: 72 LQKWRKAFGVIPQKVFIFSGTFRKNL---DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQL 128
Query: 444 ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR 503
+ + G LS G KQ + +AR+++ KILLLDE ++ LD + +++++ L QA
Sbjct: 129 DFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC 188
Query: 504 TMIIIAHRLSTIRKADLIGVLQSGRV 529
T+I+ HR+ + + V++ +V
Sbjct: 189 TVILSEHRIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-17
Identities = 67/218 (30%), Positives = 98/218 (44%), Gaps = 50/218 (22%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK---KLQLKWLRSQMGLVNQEP- 400
T+ +VG SG GKST+ LL P G + G + K LR ++ +V Q P
Sbjct: 43 TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPY 102
Query: 401 -----------ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG- 448
IL +E +LI ++ E KA +M KVG
Sbjct: 103 GSLNPRKKVGQIL-----EEPLLINTSLSAAERREKALA-------MMA-------KVGL 143
Query: 449 ------QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD----- 497
++ SGGQ+QRIAIARAL+ DP +++ DE SALD + + L+
Sbjct: 144 RPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---VQAQVLNLMMDL 200
Query: 498 QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
Q G + + I+H LS + AD + V+ GR +E G+
Sbjct: 201 QQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
Length = 327 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-17
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 38/237 (16%)
Query: 327 EIEFKDVDFSYPTRPDTP-----------TI------GLVGSSGSGKSTVISLLERFYDP 369
+I F+ V+ Y + TP +I ++G +GSGKST++ L P
Sbjct: 2 DITFQKVEHRY--QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59
Query: 370 VKGNILLDGHKI----KKLQLKWLRSQMGLVNQ--EPILFSTSIKENILIGKP---GASM 420
G + + I K +LK LR ++G+V Q E LF +++++I G P G S
Sbjct: 60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSE 118
Query: 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480
E + A+ ++L E + + +LSGGQ +R+AIA L +P++L+LDE
Sbjct: 119 EDAKQKAREM------IELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 481 TSALDAESERIVQEALDQ--ASQGRTMIIIAHRLSTI-RKADLIGVLQSGRVIESGS 534
T+ LD + + + E + +G T +++ H + R AD I V+ G V G+
Sbjct: 173 TAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-17
Identities = 60/196 (30%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL-FST 405
GL+G +G+GKST+ ++ P G I + G + + + R+++G+V Q L
Sbjct: 71 GLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEF 129
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
+++EN+L+ M T A ++ +F +L + +V LSGG K+R+ +A
Sbjct: 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEF-ARLESKADARVSD----LSGGMKRRLTLA 184
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI-RKADLIGV 523
RALI DP++L+LDE T+ LD + ++ E L ++G+T+++ H + R D + V
Sbjct: 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 244
Query: 524 LQSGRVIESGSHDVLM 539
L++GR I G L+
Sbjct: 245 LEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 3e-17
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 21/179 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKI--KKLQLKWLRSQMGLVNQEP 400
++G SG GKST + + R D + G ++ DG I K LR ++G+V Q+P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 401 ILFSTSIKENILIG-------KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
F SI +NI G E V K+ + A + D +++D ++ + +
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD---EVSD----RLDKNALG 182
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
LSGGQ+QR+ +AR L +P+ILLLDE TSALD ++ +++ + + T++I+ H +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
|
Length = 286 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 3e-17
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 348 LVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG--LVNQEPIL 402
++G +GSGKST I + Y+ +G IL DG I +L R++ G L Q P+
Sbjct: 35 IMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPDE-RARAGIFLAFQYPVE 92
Query: 403 FS-TSIKE------NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455
+ + N G G E + + + A + + + Y S
Sbjct: 93 IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERY------VNEGFS 146
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAH--RL 512
GG+K+R I + L+ +PK+ +LDE S LD ++ +IV E ++ +GR ++II H RL
Sbjct: 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
Query: 513 STIRKADLIGVLQSGRVIESG 533
K D + VL GR+++SG
Sbjct: 207 LDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 4e-17
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 14/202 (6%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
+ L+G SG GK+T++ + F + G I + + + + L+ Q LF
Sbjct: 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAPPHKRGLALLFQNYALF 91
Query: 404 S-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
+++N+ G M A + A+ + G QLSGG +QRI
Sbjct: 92 PHLKVEDNVAFGLRAQKMPKADIAERVADALKLV-----GLGDAAAHLPAQLSGGMQQRI 146
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQE---ALDQASQGRTMIIIAH-RLSTIRKA 518
AIARA+ +P +LLLDE SALDA ++E AL + T++ + H + + A
Sbjct: 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA 206
Query: 519 DLIGVLQSGRVIESGSHDVLMQ 540
D G+++ GR+ G L
Sbjct: 207 DKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
T+ ++G +GSGKST+ +L +P G IL++ H + + ++ ++ Q+P +
Sbjct: 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDP---N 97
Query: 405 TSIKENILIG-------KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
TS+ + IG + +E + Q +++ + L+ G
Sbjct: 98 TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFET----LRMVGLLPDHANYYPHMLAPG 153
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAE-SERIVQEALD-QASQGRTMIIIAHRLSTI 515
QKQR+A+ARALI PKI++ DEA ++LD +++ L+ Q QG + I + + I
Sbjct: 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI 213
Query: 516 RK-ADLIGVLQSGRVIESGS-HDVL 538
+ +D + V+ G V+E GS DVL
Sbjct: 214 KHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 4e-17
Identities = 64/257 (24%), Positives = 120/257 (46%), Gaps = 36/257 (14%)
Query: 978 IELKNVFFSYPSRPDQMI--FKGLTLKIEAGKTVALVGQSGSGKSTII-----------G 1024
I++KN+ + + + ++++I G+ +A++GQ+GSGK+T I G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1025 LIERFYD-------PQSGSVMVDERNIKSYNLRK------LRSCIALVSQ--EPTLFAGT 1069
IE + + ++++ I+ +K +R + +V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRIALA 1128
I ++I++G + K A ++I G D +Y +LSGGQK+R+ALA
Sbjct: 123 IEKDIIFG---PVSMGVSKEEAKKRAAKYIELV--GLDESYLQRSPFELSGGQKRRVALA 177
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKM-MVGRTCVVVAHRL-STIQKADNIVV 1186
+ P L+ DE T+ LD + E + + G+T ++V H L + ++ +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIF 237
Query: 1187 IKNGKVVEQGTQSSLLS 1203
K+GK+++ G +LS
Sbjct: 238 FKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 5e-17
Identities = 54/205 (26%), Positives = 111/205 (54%), Gaps = 18/205 (8%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSYNLRKL-R 1053
++LK+ AG+ V+L G++G+GKST++ ++ Y P G ++ + +++ N+R R
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDTER 81
Query: 1054 SCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
+ IA++ QE L ++ +NI G E+ + A+ A + + + D
Sbjct: 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLL--AQLKLDINPAT 139
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE-----NLVQEALEKMMVGRT 1167
L GQ+Q + +A+A+ K +L+LDE T++L + SE +++++ G
Sbjct: 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAH---GIA 195
Query: 1168 CVVVAHRLSTIQK-ADNIVVIKNGK 1191
C+ ++H+L+ ++ +D I VI++G+
Sbjct: 196 CIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 59/224 (26%), Positives = 111/224 (49%), Gaps = 28/224 (12%)
Query: 986 SYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045
Y R + G++L ++ G+ V L+G +G+GK+T +I P SG +++D ++I
Sbjct: 9 RYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65
Query: 1046 SYNL-RKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA----TEAEIRKAAVLANAHEF- 1098
+ ++ R I + QE ++F T+ +NI+ E+ E E + +L EF
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL---EEFH 122
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD--SASE--NL 1154
I+ + LSGG+++R+ +ARA+ NP LLLDE + +D + + +
Sbjct: 123 ITHLRK-------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI 175
Query: 1155 VQEALEKMMVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
++ ++ G ++ H + T+ D +I GKV+ +GT
Sbjct: 176 IKILKDR---GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGT 216
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 8e-17
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTII----GL---------IERFY-----DPQSGSVMV 1039
++ E K ++G SGSGKST++ GL + Y +
Sbjct: 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103
Query: 1040 DERNIKSYNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+ IK N ++LR +++V Q P LF TI ++I++G VA + +A LA +
Sbjct: 104 YSKKIK--NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGP-VALGVKKSEAKKLAKFYL 160
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN-LVQ 1156
+D +Y LSGGQK+R+A+A + P IL+ DE T+ LD E+ ++Q
Sbjct: 161 NKMGLDD---SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217
Query: 1157 EALEKMMVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
L+ +T V+ H + + + AD ++V+ GK+++ GT
Sbjct: 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 8e-17
Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 48/266 (18%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSG 1035
IE+KN+ + + + K ++ IE G+ + ++G+SG+GKS ++ ++ Y+P SG
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 1036 SVM---------------------------------VDERNIKSYNLRKLRSCIALVSQE 1062
++ VD N+ R++R IA++ Q
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 1063 PTLFAG--TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120
G T+ N++ E E + A + I + + R LSGG
Sbjct: 118 TFALYGDDTVLDNVL---EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR--DLSGG 172
Query: 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTI 1178
+KQR+ LAR + K P + L DE T LD + LV ALE+ + G + V+ +H I
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 1179 QK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ +D + ++NG++ E+GT +++
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 21/232 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIG----LIERFYDPQ 1033
IE++++ S+ + G+ L+I AL+G SGSGKST++ LIE + + +
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1034 -SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG----KEVATEAEI- 1086
SG V +D ++I ++ +LR + +V Q P +I +N+ G + V ++ E+
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 1087 -RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
R L A + +D D G +LSGGQ+QR+ +ARA+ P +LL DE T+
Sbjct: 121 ERVRWALEKA-QLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 1146 ALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
LD + ++ ++ T V+V H + +D + + G++VE G
Sbjct: 176 NLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 36/217 (16%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI----KKLQLK 387
D +F+ P R T L G SGSGK+++I+++ P +G I L+G + K + L
Sbjct: 16 DANFTLPARGIT---ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 388 WLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK 446
+ ++G V Q+ LF +++ N+ G + + A + L G E
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYG---------MWKSMRAQFDQLVALL--GIEHL 121
Query: 447 VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD----AES----ERIVQEALDQ 498
+ ++ LSGG+KQR+AI RAL+ P++LL+DE ++LD E ER+ E
Sbjct: 122 LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI--- 178
Query: 499 ASQGRTMII-IAHRLSTI-RKADLIGVLQSGRVIESG 533
I+ ++H L + R AD + VL++G+V SG
Sbjct: 179 ----NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 39/242 (16%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---- 1033
IE N+ Y S + KG+ LKI AL+G SG GKST++ R +
Sbjct: 5 IETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 1034 -SGSVMVDERNIKSYNLR--KLRSCIALVSQEPTLFAG-TIRQNIVYG----KEVATEAE 1085
G V + RNI S ++ ++R + +V Q P F TI N+ G V ++ E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 1086 I--------RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137
+ +KAA+ +D + Y LSGGQ+QR+ +ARA+ P I
Sbjct: 122 LDERVEWALKKAALW-------DEVKDRLNDYPS----NLSGGQRQRLVIARALAMKPKI 170
Query: 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKA---DNIVVIKNGKVVE 1194
LL+DE T+ +D ++E L ++ T V+V H S Q A D + + GK++E
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH--SPAQAARVSDYVAFLYLGKLIE 228
Query: 1195 QG 1196
G
Sbjct: 229 VG 230
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 337 YPTRPDTPTIGL----------VGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL 386
Y +P I L +G SG GK+T+++L+ F G+I LDG ++
Sbjct: 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG- 69
Query: 387 KWLRSQMGLVNQ-EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN-DGYE 444
++ G+V Q E +L ++++N+ G A +E K + H + K+ +G E
Sbjct: 70 ----AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE---KMQRLEIAHQMLKKVGLEGAE 122
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQG 502
+ + QLSGGQ+QR+ IARAL +P++LLLDE ALDA + +Q L + G
Sbjct: 123 KR---YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG 179
Query: 503 RTMIIIAH 510
+ +++I H
Sbjct: 180 KQVLLITH 187
|
Length = 255 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 43/219 (19%)
Query: 345 TIGLVGSSGSGKST----VISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVN 397
T+G+VG SG GKST +I L++ G + G + + + + +RS + ++
Sbjct: 49 TLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIF 104
Query: 398 QEPILFSTS--------IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG- 448
Q+P L S + I E + P S + V +A +M KVG
Sbjct: 105 QDP-LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKA------MML-------KVGL 150
Query: 449 ------QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QAS 500
++ + SGGQ QRI IARALI +PK+++ DE SALD + V L Q
Sbjct: 151 LPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210
Query: 501 QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538
G ++I IAH L+ ++ +D + V+ G +E G++D +
Sbjct: 211 MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 59/234 (25%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVM---VDERNIKSYNL 1049
G+TL++ G+T+ +VG+SG GKST IIGL++ G V D +K
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEW 93
Query: 1050 RKLRSCIALVSQEPTLFAGTIRQNI---------VYGKEVATE-------AEIRKAAVLA 1093
R +RS I ++ Q+P L + R I Y +++ + A + K +L
Sbjct: 94 RAVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 1094 N-----AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
N HEF SGGQ QRI +ARA++ P +++ DE SALD
Sbjct: 153 NLINRYPHEF-------------------SGGQCQRIGIARALILEPKLIICDEPVSALD 193
Query: 1149 SASE----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ + NL+Q+ L++ M G + + +AH L+ ++ +D ++V+ G VE GT
Sbjct: 194 VSIQAQVVNLLQQ-LQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245
|
Length = 331 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056
+G++ ++ G+ L+G +G+GK+T I ++ P SG V ++ R++R I
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRI 75
Query: 1057 ALVSQEPTLFAG-TIRQNIV-------YGKEVATE--AEIRKAAVLANAHEFISSTEDGY 1106
+V Q+ ++ T +N+ E E+ L A + + T
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKT---- 131
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--V 1164
SGG ++R+ +AR+++ P +L LDE T LD + V E +EK+
Sbjct: 132 ----------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181
Query: 1165 GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
G T ++ H + ++ D + +I +G+++ +GT L
Sbjct: 182 GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-16
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDP---VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL 402
+ L+G SG GKST++S + G + L+ ++ L + Q+G++ Q+ +L
Sbjct: 31 VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALL 88
Query: 403 FST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
F S+ +N+L P T+ A+ + + + G + Q LSGGQ+ R
Sbjct: 89 FPHLSVGQNLLFALPA----TLKGNARRNAANAALERS--GLDGAFHQDPATLSGGQRAR 142
Query: 462 IAIARALIRDPKILLLDEATSALDA 486
+A+ RAL+ PK LLLDE S LD
Sbjct: 143 VALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 2e-16
Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 8/187 (4%)
Query: 348 LVGSSGSGKST----VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
+VG G GKS+ ++ ++ V + + + R + Q+P L
Sbjct: 32 IVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91
Query: 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ +++ENI G P + + A ++ I L G +T++G+ G+ LSGGQ+QRI
Sbjct: 92 NATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC 150
Query: 464 IARALIRDPKILLLDEATSALDAE-SERIVQEALDQASQG--RTMIIIAHRLSTIRKADL 520
+ARAL ++ I+ LD+ SALD S+ ++QE + + Q RT++++ H+L + AD
Sbjct: 151 VARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADW 210
Query: 521 IGVLQSG 527
I ++ G
Sbjct: 211 IIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 2e-16
Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 25/201 (12%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILF 403
+ ++G +GSGKST L++ ++ +G + +DG + + LR ++G+V Q P
Sbjct: 36 VSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFV 95
Query: 404 STSIKENILIG--KPGASMETVVK----AAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
++++++ G G E ++K A A N+ DF + +LSGG
Sbjct: 96 GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------ARLSGG 144
Query: 458 QKQRIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIAHRLS 513
QKQR+A+A + P+I++LDE+TS LD E R++ E ++ T++ I H L
Sbjct: 145 QKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLD 202
Query: 514 TIRKADLIGVLQSGRVIESGS 534
+D I V+++G +I+ +
Sbjct: 203 EAASSDRILVMKAGEIIKEAA 223
|
Length = 277 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEP--IL 402
+ ++G +GSGKST+ + P +G + +DG + W +R++ G+V Q P +
Sbjct: 39 LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQI 98
Query: 403 FSTSIKENILIG------KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+T ++E++ G P E V ++ + ++++ + + LSG
Sbjct: 99 VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY-----RRHAPHL------LSG 147
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLST 514
GQKQR+AIA L P+ ++ DE T+ LD R V + + ++ G T+I+I H +
Sbjct: 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207
Query: 515 IRKADLIGVLQSGRVIESGS 534
+AD I V+ SG+V+ G+
Sbjct: 208 AVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (201), Expect = 2e-16
Identities = 58/202 (28%), Positives = 105/202 (51%), Gaps = 22/202 (10%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGN-------ILLDGHKIKKLQLKWLRSQMGLVNQE 399
+G SG GKST + L + D ++G L + KK+ LR+++G+V Q+
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 400 PILFSTSIKENILIGKPGASM-------ETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
P F SI +N+ G + + V K+ ++A + D + + + + G
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGN 224
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
LSGGQ+QR+ IARA+ +P++LL+DE TSALD + ++E + + + ++II+ H +
Sbjct: 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSM 284
Query: 513 STIRK-ADLIGVLQSGRVIESG 533
+ ++ +D G + E+G
Sbjct: 285 AQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 25/204 (12%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G SG GK+TV+ L+ P +G I +DG + ++ + + +V Q LF S
Sbjct: 37 LLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVFQSYALFPHMS 94
Query: 407 IKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQK 459
+ EN+ ++G P + VK A ++L D G+E + + Q+SGGQ+
Sbjct: 95 LGENVGYGLKMLGVPKEERKQRVKEA---------LELVDLAGFEDR---YVDQISGGQQ 142
Query: 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLS-TIR 516
QR+A+ARALI PK+LL DE S LDA R ++E + + Q T + + H S
Sbjct: 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA 202
Query: 517 KADLIGVLQSGRVIESGSHDVLMQ 540
+D + V+ G++++ GS L +
Sbjct: 203 VSDTVIVMNKGKIMQIGSPQELYR 226
|
Length = 351 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 77/255 (30%), Positives = 122/255 (47%), Gaps = 42/255 (16%)
Query: 978 IELKNVFFSYPSRPDQ---MIFKGLT------------------LKIEAGKTVALVGQSG 1016
I KNV + +PD+ ++ +G T L IE G+ L+G SG
Sbjct: 1 IRFKNVDIVFGDQPDEALALLDQGKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSG 60
Query: 1017 SGKSTIIGLIERFYDPQSGSVMV--DERNIKSYN-----LRKLRS-CIALVSQEPTLFAG 1068
SGKST++ + GSV+V + ++ N LR+LR+ +++V Q+ L
Sbjct: 61 SGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPW 120
Query: 1069 -TIRQNIVYGKEVA--TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125
T+ +N+ +G E+ +AE RK E + D GE LSGG +QR+
Sbjct: 121 RTVEENVAFGLEMQGMPKAERRKRV--DEQLELVGLA-QWADRKPGE----LSGGMQQRV 173
Query: 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADN 1183
LARA ILL+DE SALD +Q+ L ++ + +T V V+H L K N
Sbjct: 174 GLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGN 233
Query: 1184 -IVVIKNGKVVEQGT 1197
I +++ G++++ GT
Sbjct: 234 RIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-16
Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 18/202 (8%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDP----VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
+ ++GSSG+GK+T+++ L F P G++LL+G I +++ S V Q+ +
Sbjct: 54 LAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMR-AIS--AYVQQDDL 109
Query: 402 LFST-SIKENILIG---KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ--LS 455
T +++E+++ + + K + V + L T++G G LS
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ-ALGLRKCANTRIGVPGRVKGLS 168
Query: 456 GGQKQRIAIARALIRDPKILLLDEATSALDAES-ERIVQEALDQASQGRTMIIIAHRLST 514
GG+++R+A A L+ DP +L DE TS LD+ +VQ A +G+T+I H+ S+
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSS 228
Query: 515 --IRKADLIGVLQSGRVIESGS 534
D I ++ GRV GS
Sbjct: 229 ELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
++L I +G+ VAL+G SGSGK+T++ +I SG + ++ + R + +
Sbjct: 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK--VGF 78
Query: 1059 VSQEPTLFAG-TIRQNIVYG------KEVATEAEIR-KAAVLANAHEFISSTEDGYDTYC 1110
V Q LF T+ NI +G +E A I+ K L + ++ D Y
Sbjct: 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ-LAHLADRYPA-- 135
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTC 1168
QLSGGQKQR+ALARA+ P ILLLDE ALD+ ++ L ++ + T
Sbjct: 136 -----QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190
Query: 1169 VVVAH-RLSTIQKADNIVVIKNGKVVEQGT 1197
V V H + ++ AD +VV+ G + + GT
Sbjct: 191 VFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 2e-16
Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 16/237 (6%)
Query: 977 FIELKNVFFSY-PSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
I+ + V ++Y P+ P + +F + L+++ G AL+G +GSGKST++ + P
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 1034 SGSVMVDERNIKSYNLRK----LRSCIALVSQEP--TLFAGTIRQNIVYGKEVATEAEIR 1087
G V V + + S + +K +R + +V Q P LF T+ +++ +G + + +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
+ A E + ++ ++ + +LSGGQ +R+A+A + P +L+LDE T+ L
Sbjct: 120 AEKIAAEKLEMVGLADEFWE----KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
Query: 1148 DSASENLVQEALEKM-MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
D + + + E + G+T V+V H + + AD + +++ G ++ GT S +
Sbjct: 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
Length = 288 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 35/210 (16%)
Query: 328 IEFKDVDFSYPTRPDTPTIG----------LVGSSGSGKSTVISLLERFYDPVKGNILLD 377
IE K+V + + +VG +G+GK+T++SLL + P G++ L
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLL 91
Query: 378 GHKIKKLQLKW-LRSQMGLVN---QEPILFSTSIKENILIGKPGASM-------ETVVKA 426
G + K + + LR ++GLV+ E ++++ +L G + + A
Sbjct: 92 GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA 151
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
AQ L D FG LS G+++R+ IARAL++DP++L+LDE LD
Sbjct: 152 AQWLLELLGAKHLADRP------FG-SLSQGEQRRVLIARALVKDPELLILDEPAQGLDL 204
Query: 487 ES-----ERIVQEALDQASQGRTMIIIAHR 511
+ R+ + A + ++ + H
Sbjct: 205 IAREQLLNRLEELAASPGAP--ALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 52/240 (21%)
Query: 328 IEFKDVDFSYPTRPDTPT---------------IGLVGSSGSGKSTVISLLERFYDP--- 369
+EFK V F+YP D+ L+G +GSGKST+ L+ P
Sbjct: 6 VEFKHVSFTYP---DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 370 VKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIG-----KPGASMET 422
I +DG + + +R ++G+V Q P ++ +++ G P M
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQ------LSGGQKQRIAIARALIRDPKILL 476
+V+ L D VG LSGGQKQR+AIA L +PKI++
Sbjct: 123 IVRDV-----------LAD-----VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIII 166
Query: 477 LDEATSALDAES-ERIVQEALD-QASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
LDE+TS LD E+I++ + T+I I H + AD + VL G+++ GS
Sbjct: 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 24/211 (11%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
Q ++L + L+G +G+GKST++ +I P SG ++ D +L K+
Sbjct: 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKI 72
Query: 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
S I + P L+ T R+N+ K T + + + + + T G
Sbjct: 73 GSLI----ESPPLYENLTARENL---KVHTTLLGLPDSRIDEVLN-IVDLTNTG-----K 119
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-----GR 1166
++ Q S G KQR+ +A A+L +P +L+LDE T+ LD +QE L +++ G
Sbjct: 120 KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG---IQE-LRELIRSFPEQGI 175
Query: 1167 TCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
T ++ +H LS +Q+ AD+I +I G + QG
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 13/169 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
I L+G SG GKST+++L+ P G ++L+G +I + +M + +L
Sbjct: 14 ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWL 69
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQKQRIA 463
+++ENI + + + K+ + A V + I + L + + + G QLSGG KQR+A
Sbjct: 70 TVRENIALAV-DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG----QLSGGMKQRVA 124
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAH 510
IARAL PK+LLLDE ALDA + +QE L Q + T++++ H
Sbjct: 125 IARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 3e-16
Identities = 59/194 (30%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV----NQEPIL 402
GL+G +G+GK+T + +L P G+I L G + + + R ++G+V N +P
Sbjct: 37 GLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQRVGVVPQFDNLDP-- 93
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
+++EN+L+ + A + +F KL + + KVG+ LSGG K+R+
Sbjct: 94 -DFTVRENLLVFGRYFGLSAAAARALVPPLLEF-AKLENKADAKVGE----LSGGMKRRL 147
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI-RKADL 520
+ARAL+ DP +L+LDE T+ LD ++ ++ E L ++G+T+++ H + R D
Sbjct: 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207
Query: 521 IGVLQSGRVIESGS 534
+ V++ GR I G+
Sbjct: 208 LCVIEEGRKIAEGA 221
|
Length = 306 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-- 1033
G + LKNV P + + I G+ V L+G SG GKST++ + Q
Sbjct: 1 GMLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
Query: 1034 -SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAV 1091
+G + ++E+ + L + I ++ Q+ LF ++ QN+++ + R+ A
Sbjct: 58 CTGELWLNEQRLDM--LPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAA 115
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
A + G D + LSGGQ+ R+AL RA+L P LLLDE S LD A
Sbjct: 116 NA------ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 4e-16
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 47/193 (24%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ K ++L + AG+ VAL G SG+GKST++ + Y P SG ++V R +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV----------RHEGA 72
Query: 1055 CIALVSQEPTLFAGTIRQNIVY------------GKEVATE---------AEIRKAAVLA 1093
+ L P R+ I Y EV E R A
Sbjct: 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAREL 132
Query: 1094 NAHEFISSTEDGYDTYCGERGVQL-----SGGQKQRIALARAVLKNPMILLLDEATSALD 1148
A I ER L SGG++QR+ +AR + + ILLLDE T++LD
Sbjct: 133 LARLNIP-----------ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
Query: 1149 SASENLVQEALEK 1161
+A+ +V E + +
Sbjct: 182 AANRQVVVELIAE 194
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 45/231 (19%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
K + F+ T+ ++G +GSGKST+ +L +P G +L+D H + +
Sbjct: 30 KPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRS 86
Query: 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK---- 446
++ ++ Q+P STS+ I + + DF ++LN E +
Sbjct: 87 QRIRMIFQDP---STSLNPRQRISQ----------------ILDFPLRLNTDLEPEQREK 127
Query: 447 -----VGQFGV----------QLSGGQKQRIAIARALIRDPKILLLDEATSALD-AESER 490
+ Q G+ L+ GQKQR+ +ARALI PK+++ DEA ++LD + +
Sbjct: 128 QIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQ 187
Query: 491 IVQEALD-QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS-HDVL 538
++ L+ Q QG + I + L ++ +D + V+ G V+E GS DVL
Sbjct: 188 LINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 5e-16
Identities = 107/497 (21%), Positives = 177/497 (35%), Gaps = 65/497 (13%)
Query: 73 AERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLA 132
+ +R+ + +L + + ++ +T D I + P
Sbjct: 81 GMHIIANLRIALCEKILGAPI----EEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAI 135
Query: 133 HLTSFIGSI-------LVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYE 185
L F I + F ++ + LL + G F +D +
Sbjct: 136 ALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTH 195
Query: 186 A-AGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYG 244
A A G E I IR + H ++ + + + I L+ +G
Sbjct: 196 AIAFGAKELKIHGIRRLSF---AHGAIQESANNIADLHIIEI--------LIFIAAENFG 244
Query: 245 AWAFQSWVGSVLVTE-----RGEKGGLVFVAGICTILGG-VGIMSALPNLSFISQATTAA 298
F +G L FV + I G ++SALP ++QA A
Sbjct: 245 QLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALP---ILAQAQIAC 301
Query: 299 TRIFEMIDRVP-----VINSEDEIGKTLAYLR--GEIEFKDVDFSYPTRPDTPTIGL--- 348
R+ + +R + S+ + LA+ + IE KDV + + L
Sbjct: 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI 361
Query: 349 ------------VGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396
VG +G GKST+ L Y P +G ILLDG + R +
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAI 421
Query: 397 NQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+ LF I + AS++ + Q + D + + G+ T LS
Sbjct: 422 FADFHLFDDLIGPD---EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTA-----LST 473
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL--DQASQGRTMIIIAHRLST 514
GQ++R+A+ A + D ILL DE + D +R E L D QG+T+III+H
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533
Query: 515 IRKADLIGVLQSGRVIE 531
AD I L +G +++
Sbjct: 534 FELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 25/209 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFY---DPVKGNILLDGHKIKKL-----QLKWLRSQMGLVN 397
+ L+G SGSGKST++ L +I L G +++ ++ R+ G +
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92
Query: 398 QEPILFST-SIKENILIGKPGAS--METVVKAAQAANVHDFIMKLNDGYETKVG--QFGV 452
Q+ L + S+ EN+LIG G++ T + L T+VG F
Sbjct: 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL-----TRVGMVHFAH 147
Query: 453 Q----LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMI 506
Q LSGGQ+QR+AIARAL++ K++L DE ++LD ES RIV + L +Q G T++
Sbjct: 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVV 207
Query: 507 IIAHRLS-TIRKADLIGVLQSGRVIESGS 534
+ H++ +R + I L+ G V GS
Sbjct: 208 VTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 43/228 (18%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTII----GLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
L+ ++ AG+ + LVG +G+GKST++ GL+ P SGS+ + +++++ +L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 1055 CIA-LVSQEPTLFAGTIRQNI-VYGKEVATEAEIRKA-AVLANA-------HEFISSTED 1104
A L Q+ FA + Q + ++ + + A +A A ++
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVN---- 125
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLK-----NP--MILLLDEATSALDSASENLVQE 1157
QLSGG+ QR+ LA VL+ NP +LLLDE ++LD A + +
Sbjct: 126 -----------QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDR 174
Query: 1158 ALEKM-MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLS 1203
L ++ G V+ +H L+ T++ AD + ++K GK++ G + +L+
Sbjct: 175 LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
Length = 248 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--PQS---GSVMVDERNI--KSYNLRK 1051
+ L IE A +G SG GKST++ + R ++ P + G V++D ++ +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 1052 LRSCIALVSQEPTLF-AGTIRQNIVYG--------KEVATEAEIRKAAVLANAHEFISST 1102
+R I +V Q P F +IR N+V G K+ E + K+ AN +
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL-VEKSLRGANLWNEVKDR 141
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
D + G LSGGQ+QR+ +ARA+ P +LL+DE SALD S +++ + ++
Sbjct: 142 LD-------KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 1163 MVGRTCVVVAHRL 1175
T V+V H +
Sbjct: 195 KQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 6e-16
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
K ++ + G+T+ LVG+SGSGKST ++ LI G + D + + + N R+L
Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDGQPLHNLNRRQL 357
Query: 1053 ---RSCIALVSQEPTLFAG---TIRQNIVYGKEV---ATEAEIRKAAVLANAHEFISSTE 1103
R I +V Q+P + Q I G V A R+ V+A E
Sbjct: 358 LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV----- 412
Query: 1104 DGYDTYCGER-GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
G D R + SGGQ+QRIA+ARA++ P +++LDE TS+LD + + L+ +
Sbjct: 413 -GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
Query: 1163 MVGR--TCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ ++H L ++ ++V++ G+VVEQG
Sbjct: 472 QQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 6e-16
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 58/242 (23%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKS-TIIGLIERFYDPQ----SGSVM--------VDERNI 1044
++L+IEAG+T+ALVG+SGSGKS T + ++ P SG + E+
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT- 85
Query: 1045 KSYNLRKLR-SCIALVSQEPTLFAG---TIRQNIVYGKEV-ATEAEIRKAAVLANAHEFI 1099
LR +R + IA++ QEP + T+ + + EV + +R+ A E +
Sbjct: 86 ----LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY---EVLSLHRGMRREAARG---EIL 135
Query: 1100 SSTEDGYDTYCGER-GV------------QLSGGQKQRIALARAVLKNPMILLLDEATSA 1146
+ C +R G+ QLSGG++QR+ +A A+L P +L+ DE T+A
Sbjct: 136 N---------CLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTA 186
Query: 1147 LDSASE----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
LD + + L++E +++ +G + + H LS ++K AD + V++NG+ VEQ ++L
Sbjct: 187 LDVSVQAQILQLLRELQQELNMG--LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
Query: 1202 LS 1203
S
Sbjct: 245 FS 246
|
Length = 529 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 7e-16
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 42/233 (18%)
Query: 328 IEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNI 374
I ++V +SYP TP IG++G +GSGKST+ L P KG +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 375 LLDGHKIKKL-QLKWLRSQMGLVNQEP--ILFSTSIKENILIGK-----PGASMETVVKA 426
L+ G +L+ +R +G+V Q P +++E++ G P + V
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQ----LSGGQKQRIAIARALIRDPKILLLDEATS 482
A A E + ++ + LSGGQ Q +A+A L +P+ L+ DE TS
Sbjct: 120 ALA--------------EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165
Query: 483 ALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
LD +S V E + + +G+T++ I H L + AD I V+ G+++ G
Sbjct: 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 7e-16
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 34/231 (14%)
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
L+NV +Y D +I K + L I G+ V VG SG GKST++ +I D SG + +
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 1040 DERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRK-----AAV 1091
E+ + + R + +V Q L+ ++ +N+ +G ++A + EI + A V
Sbjct: 63 GEKRMNDVPPAE-RG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
L AH +R + LSGGQ+QR+A+ R ++ P + LLDE S LD+A
Sbjct: 121 LQLAHLL-------------DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 1151 SENLVQEALE----KMMVGRTCVVVAH-RLSTIQKADNIVVIKNGKVVEQG 1196
VQ +E +GRT + V H ++ + AD IVV+ G+V + G
Sbjct: 168 LR--VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 1e-15
Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 45/275 (16%)
Query: 282 MSALPNLSFISQATTAAT---RIFEMI---DRVPVINSEDEIGKTLAYLRGEIEFKDVDF 335
++ LPNL +SQ A RI E++ +R+ N + G I K+ F
Sbjct: 571 LNMLPNL--LSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAP------AISIKNGYF 622
Query: 336 SYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382
S+ ++ PT + +VG +G GK+++IS + + + ++
Sbjct: 623 SWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------ 676
Query: 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV-HDFIMKLND 441
+R + V Q +F+ +++ENIL G S E +A + HD + L
Sbjct: 677 ------IRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDVTALQHD--LDLLP 727
Query: 442 GYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SERIVQEALDQA 499
G + T++G+ GV +SGGQKQR+++ARA+ + I + D+ SALDA + ++ +
Sbjct: 728 GRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787
Query: 500 SQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
+G+T +++ ++L + D I ++ G + E G+
Sbjct: 788 LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822
|
Length = 1495 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 59/195 (30%), Positives = 106/195 (54%), Gaps = 19/195 (9%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G+SG GKST++ +L F P G I+LDG + + + + ++ Q LF +
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMT 107
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV----QLSGGQKQRI 462
+++NI G + + KA A+ V++ + ++ + +F QLSGGQ+QR+
Sbjct: 108 VEQNIAF---GLKQDKLPKAEIASRVNEMLGLVH------MQEFAKRKPHQLSGGQRQRV 158
Query: 463 AIARALIRDPKILLLDEATSALDAE-SERIVQEALDQASQ-GRTMIIIAH-RLSTIRKAD 519
A+AR+L + PK+LLLDE ALD + +R+ E +D + G T +++ H + + A
Sbjct: 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG 218
Query: 520 LIGVLQSGRVIESGS 534
I ++ G+ ++ G
Sbjct: 219 RIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 1e-15
Identities = 56/227 (24%), Positives = 110/227 (48%), Gaps = 31/227 (13%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--PQ---SGSVMVDERNI--KSYNL 1049
K +++ A++G SG GKST++ I R +D P +G +++D+ +I + +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1050 RKLRSCIALVSQEPTLF-AGTIRQNIVYGKEV-----------ATEAEIRKAAVLANAHE 1097
+R + +V Q+P F A +I N++ G ++ E+ +++ A+ +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
+ S ++LSGGQ+QR+ +AR + P ++L+DE SALD S ++E
Sbjct: 141 RLKSN-----------AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+E++ T ++V H + + +D G +VE G + +
Sbjct: 190 LIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236
|
Length = 252 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 1e-15
Identities = 116/585 (19%), Positives = 216/585 (36%), Gaps = 61/585 (10%)
Query: 635 SPSSLLRLLRMS--AIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692
+ +L LLR AI LG G A+ L S+ +A I +++ L
Sbjct: 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIAL-------LASINNA--IHEENFLGQG 54
Query: 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTS 752
+ F GL L L+ + A G H++ +R + EKI I + D +
Sbjct: 55 SLFS---FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE--EIDRRGA 109
Query: 753 AAICARLANEAHLVRSFIADRMSLLIQ--VFFS--ASLAYTLSLLVTWRVAIVMIAVQPL 808
+ L ++ + +F+ + I +FF A LAY ++ + + I+ +
Sbjct: 110 HNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAY-----LSVPMFAITISAIII 164
Query: 809 NIGCFY-SRSVLMK---SMSEKAKKSQSEGSQLASEATT--NHRTITAFSSQDRILDLFR 862
+ K + ++ +A A H + I +
Sbjct: 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQE--- 221
Query: 863 ETMKGPKKESIKQSWFSGIGLFSSQFLTTA---SITLTFWYAGRIMNQGLVSPKQLFQAF 919
I+ F F ++ +A + +
Sbjct: 222 SANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFA-------SIDAAAISAFV 274
Query: 920 FLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASED---IEEPTK- 975
L+ + S +A+ A + + +R +E +PE + D + K
Sbjct: 275 LALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKS 334
Query: 976 -GFIELKNVFFSYPSRPDQMIFK--GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032
IELK+V + + F + L+I G V +VG++G GKST+ L Y P
Sbjct: 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394
Query: 1033 QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVL 1092
Q G +++D + + + R + + + LF I + G+ + + + L
Sbjct: 395 QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--EGEHASLDNAQQYLQRL 452
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
A + + + G+ T LS GQ++R+AL A L++ ILL DE + D A +
Sbjct: 453 EIADK-VKIEDGGFST-----TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFK 506
Query: 1153 NLVQEAL--EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195
E L + G+T ++++H + AD I+ + G +V+
Sbjct: 507 RFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 28/233 (12%)
Query: 315 DEIGKTLAYLRGEIEFKDVDFS-YPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373
IGK+ + K V+ + YP L+G +G+GKST++ +L ++P KG
Sbjct: 9 AGIGKSFGPVHA---LKSVNLTVYPGEIHA----LLGENGAGKSTLMKVLSGIHEPTKGT 61
Query: 374 ILLDGHKIKKLQLKWLRSQMG--LVNQE-PILFSTSIKENILIGKPGASMETVVKAAQAA 430
I ++ KL K L +Q+G ++ QE ++ ++ EN+ IG+ + K
Sbjct: 62 ITINNINYNKLDHK-LAAQLGIGIIYQELSVIDELTVLENLYIGR------HLTKKVCGV 114
Query: 431 NVHDF--------IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
N+ D+ +M L G + + + LS KQ + IA+ L+ D K++++DE TS
Sbjct: 115 NIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
Query: 483 AL-DAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
+L + E + + +G ++ I+H+L+ IR+ D V++ G + SG
Sbjct: 175 SLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 2e-15
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 29/206 (14%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM-GLVNQEPIL-F 403
+ ++G +G+GKST++ L P G + L+G + ++ ++ Q L F
Sbjct: 31 VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS-PAELARRRAVLPQHSSLSF 89
Query: 404 STSIKENILIG------KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
+++E + +G V A ++ G+ QLSGG
Sbjct: 90 PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGG 138
Query: 458 QKQRIAIARALIR------DPKILLLDEATSALD-AESERIVQEALDQA-SQGRTMIIIA 509
++QR+ +AR L + P+ LLLDE TSALD A +++ A A +G +I++
Sbjct: 139 EQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL 198
Query: 510 HRLS-TIRKADLIGVLQSGRVIESGS 534
H L+ R AD I +L GR++ G+
Sbjct: 199 HDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 27/220 (12%)
Query: 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI-------KSYNLRKLRSC 1055
I + +G SG GKST++ + R D G + K + +R
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 1056 IALVSQEPTLFAGTIRQNIVYGKEV---------ATEAEIRKAAVLANAHEFISSTEDGY 1106
I +V Q+P F+ +I N+ +G + + ++ AA+ + + +
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVS---- 146
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166
G+ LSGGQ+QR+ +ARA+ P +LLLDE SALD + V+E + ++
Sbjct: 147 -------GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDY 199
Query: 1167 TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGN 1206
T +V H + + + + + + L+ MG
Sbjct: 200 TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP 239
|
Length = 261 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-15
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 44/223 (19%)
Query: 345 TIGLVGSSGSGKS-TVISLLERFYDP----VKGNILLDGHKIKKLQLKWLR----SQMGL 395
T+ LVG SGSGKS T +S+L P G+I G + + LR +++ +
Sbjct: 37 TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAM 96
Query: 396 VNQEPILFSTSIKENIL------------IGKPGASMETV-----VKAAQAANVHDFIMK 438
+ QEP++ S + + + + A E + V QAA +
Sbjct: 97 IFQEPMV-SLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK------R 149
Query: 439 LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ 498
L D + QLSGG++QR+ IA AL+ P++L+ DE T+ALD + + + L +
Sbjct: 150 LTD--------YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201
Query: 499 ASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538
Q ++ I H LS +RK AD + V+Q+GR +E L
Sbjct: 202 LQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
|
Length = 529 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 2e-15
Identities = 58/228 (25%), Positives = 114/228 (50%), Gaps = 30/228 (13%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ----SGSVMVDERNIKSYNLR 1050
+ K ++ + G+ +A++G SG+GK+T++ + F P+ SGSV+++ I + +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPI---DAK 95
Query: 1051 KLRSCIALVSQE----PTLFAGTIRQNIVYGKEV----ATEAEIRKAAVLANAHEFIS-- 1100
++R+ A V Q+ PTL T+R+++++ + + ++ V E +
Sbjct: 96 EMRAISAYVQQDDLFIPTL---TVREHLMFQAHLRMPRRVTKKEKRERV----DEVLQAL 148
Query: 1101 STEDGYDTYCGERGVQ--LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
+T G G LSGG+++R+A A +L +P +L DE TS LDS V +
Sbjct: 149 GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208
Query: 1159 LEKM-MVGRTCVVVAHRLST--IQKADNIVVIKNGKVVEQGTQSSLLS 1203
L+ + G+T + H+ S+ + D I+++ G+V G+ +
Sbjct: 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 20/179 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQ-MGLVNQ-EP 400
+ +VGSSGSGKST++ LL P G+++ +G + KL LR+Q +G + Q
Sbjct: 38 MAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH 97
Query: 401 ILFSTSIKENI----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+L + EN+ LIGK K N M G E + +LSG
Sbjct: 98 LLPDFTALENVAMPLLIGK---------KKPAEINSRALEMLAAVGLEHRANHRPSELSG 148
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAHRLS 513
G++QR+AIARAL+ +P+++L DE T LDA + + + L + QG +++ H L
Sbjct: 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 39/225 (17%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNIKSYNL- 1049
I KG+ L ++ G+ A++G +GSGKST I+G + Y+ G ++ D +I L
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGEDIL--ELS 74
Query: 1050 --RKLRSCIALVSQEPTLFAG-TIRQ------NIVYGKEVAT---EAEIR-KAAVLANAH 1096
+ R+ I L Q P G T N G E++ KA +L
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134
Query: 1097 EFISSTEDGYDTYCGERGVQ--LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
EF+ ER V SGG+K+R + + +L P + +LDE S LD + +
Sbjct: 135 EFL------------ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 1155 VQEALEKMM-VGRTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
V E + + GR +++ H RL K D + V+ +G++V+ G
Sbjct: 183 VAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 30/239 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++++ V F+ R ++ IF ++L + GK A++G SG GK+T++ LI P G +
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1038 MVDERNIKSYNLRKL---RSCIALVSQEPTLFAG-TIRQNIVYGKEVATE--AEIRKAAV 1091
+ D NI + + +L R ++++ Q LF + N+ Y T+ A + + V
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 1092 LANAHEFISSTEDGYDTYCGERGV------QLSGGQKQRIALARAVLKNPMILLLDEATS 1145
+ G RG +LSGG +R ALARA+ P +++ DE
Sbjct: 125 MMKLEA------------VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFV 172
Query: 1146 ALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
D + ++ + + ++ +G TCVVV+H + + AD+ ++ + K+V G+ +L
Sbjct: 173 GQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 4e-15
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-T 405
+G +G+GK+T +S+L P G +L+ G I+ L +R +G+ Q ILF
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHL 1018
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
++ E+IL + ++ + A + M + G K + LSGG ++++++A
Sbjct: 1019 TVAEHILF-----YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG--- 522
A + D K+++LDE TS +D S R + + L + GRT+I+ H + +ADL+G
Sbjct: 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EADLLGDRI 1130
Query: 523 -VLQSGRVIESGS 534
++ GR+ SG+
Sbjct: 1131 AIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 5e-15
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
LSGG++QR+A AR L+ PK + LDEATSALD ESE + + L + G T+I + HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 39/224 (17%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTII----GLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
L+ ++ AG+ + LVG +G+GKST++ G+ SGS+ + +++++ +L
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-----SGSGSIQFAGQPLEAWSATELAR 72
Query: 1055 CIALVSQEPT-LFAGTIRQNI---VYGKEVATEAE--IRKAAVLANAHEFISSTEDGYDT 1108
A +SQ+ T FA + + K A+ +
Sbjct: 73 HRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTN-------- 124
Query: 1109 YCGERGVQLSGGQKQRIALARAVLK-----NP--MILLLDEATSALDSASENLVQEALEK 1161
QLSGG+ QR+ LA VL+ NP +LLLDE ++LD A ++ + L
Sbjct: 125 -------QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSA 177
Query: 1162 M-MVGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLS 1203
+ G V+ +H L+ T++ A ++K GK++ G + +L+
Sbjct: 178 LCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221
|
Length = 248 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 6e-15
Identities = 63/233 (27%), Positives = 100/233 (42%), Gaps = 49/233 (21%)
Query: 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391
D+ S PT T L+G +G GKST++ R P G + L I L + L
Sbjct: 20 DLSLSLPTGKIT---ALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 392 QMGLVNQEPILFSTSIKENI---------------LIGKPGASMETVVKAAQAANVHDFI 436
++ L+ Q + E I L G+ A V A
Sbjct: 77 RLALLPQHHL-----TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME------- 124
Query: 437 MKLNDGYETKVGQFGVQ----LSGGQKQRIAIARALIRDPKILLLDEATSALD----AES 488
+T++ + LSGGQ+QR +A L +D ++LLDE T+ LD E
Sbjct: 125 -------QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177
Query: 489 ERIVQEALDQASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHDVLMQ 540
R+++E L+ QG+T++ + H L+ R D + VL +G V+ G+ + +M
Sbjct: 178 MRLMRE-LNT--QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
Length = 255 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 19/185 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGK++++ L+ +P +G I G Q W+
Sbjct: 66 LAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI-------------MPG 112
Query: 406 SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+IKENI+ G ++VVKA Q + + I K + T +G+ G+ LSGGQ+ RI+
Sbjct: 113 TIKENIIFGVSYDEYRYKSVVKACQ---LEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169
Query: 464 IARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522
+ARA+ +D + LLD LD +E+ I + + + +T I++ ++ ++KAD I
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 523 VLQSG 527
+L G
Sbjct: 230 ILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 6e-15
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 31/210 (14%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL-FS 404
+GLVG +G+GK+T++ + P G +L+ G ++ L + ++ V Q+ L F
Sbjct: 32 VGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91
Query: 405 TSIKENILIGK---------PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ-- 453
+++ + +G+ + V+ A T V QF +
Sbjct: 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER--------------TGVAQFADRPV 137
Query: 454 --LSGGQKQRIAIARALIRDPKILLLDEATSALDAESE-RIVQEALDQASQGRTMIIIAH 510
LSGG++QR+ +ARAL + +LLLDE T++LD + R ++ G+T + H
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH 197
Query: 511 RLS-TIRKADLIGVLQSGRVIESGS-HDVL 538
L R D + +L GRV +G DVL
Sbjct: 198 DLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 9e-15
Identities = 62/219 (28%), Positives = 115/219 (52%), Gaps = 21/219 (9%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS-C 1055
K L+ + G+T+A++G++GSGKST+ ++ +P SG +++D+ + + RS
Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQR 88
Query: 1056 IALVSQEPTLFAGTIRQNIVYGKEV------ATEAEIRKAAVLANAHEFISSTEDGYDTY 1109
I ++ Q+P+ + RQ I + E E R+ ++ + + D Y
Sbjct: 89 IRMIFQDPST-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQ-VGLLPDHASYY 146
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD----SASENLVQEALEKMMVG 1165
L+ GQKQR+ LARA++ P +++ DEA ++LD S NL+ E EK G
Sbjct: 147 PH----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ--G 200
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ + V L ++ +D ++V+ G+VVE+G+ + +L+
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-15
Identities = 48/210 (22%), Positives = 98/210 (46%), Gaps = 26/210 (12%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057
++ ++ G+ L+G +G+GK+T +I +P G + + + +++++ I
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIG 75
Query: 1058 LVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRKAA-VLANAHEFISSTEDGYDTYCGER 1113
+ +E L+ T+ + Y E+ +AEI+K E + ++
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG--------KKTKK 127
Query: 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-----GRTC 1168
+LS G +Q+I AV+ P +L+LDE S LD + E L+ + G T
Sbjct: 128 IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN----VELLKDAIFELKEEGATI 183
Query: 1169 VVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ +HR+ +++ D ++++K G+ V GT
Sbjct: 184 IFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 1e-14
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 12/197 (6%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQ-MGLVNQEPI 401
+ +VG+SGSGKST++++L P G + G + L L LR + G + Q
Sbjct: 37 VAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH 96
Query: 402 LFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
L S + +N+ + A +E + + + + +L G E +V QLSGGQ+Q
Sbjct: 97 LLSHLTAAQNVEVPAVYAGLE---RKQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQ 151
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRKAD 519
R++IARAL+ +++L DE T ALD+ S V L Q +G T+II+ H +A+
Sbjct: 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAE 211
Query: 520 LIGVLQSGRVI-ESGSH 535
+ ++ G ++ +
Sbjct: 212 RVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
+ V F GL+G +G+GK+T I +L P G + GH + + + + +R
Sbjct: 17 RGVSFRVRR---GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVR 72
Query: 391 SQMGLVNQEPIL-FSTSIKENILI-----GKPGASMETVVKAAQAANVHDFIMKLNDGYE 444
++G+V Q+ + + EN+ I G PGA + + + DF + L + +
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRERIDELLDF-VGLLEAAD 126
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQG 502
V + SGG ++R+ IAR+L+ P++L LDE T LD ++ V E ++ + G
Sbjct: 127 RLVKTY----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182
Query: 503 RTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538
T+++ H + + D + ++ GR+I G+ + L
Sbjct: 183 MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 7/228 (3%)
Query: 320 TLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
T+ + G +D F+ P LVG +GSGKST+ L F G I + G
Sbjct: 13 TVTWRNGHTALRDASFTVPG---GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69
Query: 380 KIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG-ASMETVVKAAQAANVHDFIMK 438
++ K L + + + F +++ +++G+ G K V + +
Sbjct: 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR 129
Query: 439 LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE-RIVQEALD 497
+ D E + Q G +LSGGQK+R+ +ARA+ + +++LLDE + +D ++E RI+ +
Sbjct: 130 V-DMVEFRHRQIG-ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 498 QASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGE 545
+G+TM++ H L ++ + V+ G V+ SG + N E
Sbjct: 188 LRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLE 235
|
Length = 272 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 15/199 (7%)
Query: 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEP- 400
P GLVG++G GKST+ L P KG +L G + K L LR Q+ V Q+P
Sbjct: 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPE 87
Query: 401 -ILFSTSIKENILIGKPGASMETV-VKAAQAANVHDFIMKLNDGYETKVGQFGVQ-LSGG 457
+F T I +I S+ + V A+ D + L D + +Q LS G
Sbjct: 88 QQIFYTDIDSDIAF-----SLRNLGVPEAEITRRVDEALTLVDAQHFR--HQPIQCLSHG 140
Query: 458 QKQRIAIARALIRDPKILLLDEATSALD-AESERIVQEALDQASQGRTMIIIAHRLSTIR 516
QK+R+AIA AL+ + LLLDE T+ LD A +++ +QG +II +H + I
Sbjct: 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200
Query: 517 K-ADLIGVLQSGRVIESGS 534
+ +D + VL+ G+++ G+
Sbjct: 201 EISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 26/218 (11%)
Query: 328 IEFKDVDFSYPTR-----PDTPTIG------LVGSSGSGKSTVISLLERFYDPVKGNILL 376
+E ++V F+Y P TI L+G +GSGKST+ LL Y P G ILL
Sbjct: 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFI 436
DG + QL+ R V + LF L+G G + + Q
Sbjct: 383 DGKPVSAEQLEDYRKLFSAVFSDYHLFDQ------LLGPEGKA------SPQLIEKWLQR 430
Query: 437 MKLNDGYETKVGQFG-VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
++L G+F ++LS GQK+R+A+ AL+ + IL+LDE + D R +
Sbjct: 431 LELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490
Query: 496 L--DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531
L QG+T+ I+H AD + +++G++ E
Sbjct: 491 LLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-14
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 334 DFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393
D S+ +GL+G +GSGKST++S L R +G I +DG + L+ R
Sbjct: 1237 DLSFSVEGGQ-RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294
Query: 394 GLVNQEPILFSTSIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451
G++ Q+ +FS + ++N+ P S E + K A+ + I + D + + G
Sbjct: 1295 GVIPQKVFIFSGTFRKNL---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
LS G KQ + +AR+++ KILLLDE ++ LD + +I+++ L Q+ T+I+ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 512 L 512
+
Sbjct: 1412 V 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 20/178 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNIL-------LDGHKIKKLQLKWLRSQ-MGLVN 397
+ L G SG+GKST++ L Y P G IL +D + ++ +R + +G V+
Sbjct: 37 VALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVS 96
Query: 398 Q----EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
Q P + + + L+ + +A + + +L
Sbjct: 97 QFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPAT------- 149
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAH 510
SGG++QR+ IAR I D ILLLDE T++LDA + ++V E + +A ++G +I I H
Sbjct: 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 2e-14
Identities = 68/269 (25%), Positives = 126/269 (46%), Gaps = 26/269 (9%)
Query: 960 DPEDPKASED--IEEPTKGFIE---LKNV--FFSYPSRPDQMIFKGLTLKIEAGKTVALV 1012
DPE P+ D E G + +KN+ F RP L + + A +
Sbjct: 906 DPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPSGRP---AVDRLNITFYENQITAFL 962
Query: 1013 GQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIR 1071
G +G+GK+T + ++ P SG+V+V ++I++ NL +R + + Q LF T+
Sbjct: 963 GHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVA 1021
Query: 1072 QNIVYGKEVA----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127
++I++ ++ EA++ A+L + E+ D LSGG ++++++
Sbjct: 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQD---------LSGGMQRKLSV 1072
Query: 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQ-KADNIVV 1186
A A + + +++LDE TS +D S + + L K GRT ++ H + D I +
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAI 1132
Query: 1187 IKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215
I G++ GT L + G Y +L++
Sbjct: 1133 ISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-14
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 45/240 (18%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQ 1033
++L+ V SY + KG+ L + G+ + LVG SG GKST + GL ER
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-ERI---T 57
Query: 1034 SGSVMVDERNIKSYNLR-KLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRK- 1088
SG + + R + L R IA+V Q L+ ++R+N+ YG ++ +AEI +
Sbjct: 58 SGEIWIGGRVVN--ELEPADRD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER 114
Query: 1089 ----AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
A +L + + +LSGGQ+QR+A+ RA+++ P + L DE
Sbjct: 115 VAEAARIL------------ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162
Query: 1145 SALDSASENL-VQEALEKMMVGR----TCVVVAH-RLSTIQKADNIVVIKNGKVVEQ-GT 1197
S LD+ L VQ LE + R T + V H ++ + AD +VV+ NG V EQ GT
Sbjct: 163 SNLDAK---LRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM-NGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 12/205 (5%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSYNLRKL-R 1053
G+ L++ G+ V L G++G+GKST++ ++ Y P G + +K+ N+R R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDTER 77
Query: 1054 SCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRK-AAVLANAHEFISSTEDGYDTYCG 1111
+ I ++ QE TL ++ +NI G E+ A+ A + + D
Sbjct: 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ--LDADNV 135
Query: 1112 ERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCV 1169
R V GGQ+Q + +A+A+ K +L+LDE +S+L ++ + + + G CV
Sbjct: 136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 1170 VVAHRLSTIQK-ADNIVVIKNGKVV 1193
++H+L+ ++ D I VI++G+ V
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Query: 345 TIGLVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401
+ ++GSSGSGK+T IS G IL +G K Q + + + V Q+ I
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ--FQKC-VAYVRQDDI 91
Query: 402 LFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMK-LNDGYETKVG-QFGVQLSGGQ 458
L +++E + A + V D +++ L T++G +SGG+
Sbjct: 92 LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL---TRIGGNLVKGISGGE 148
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAH--RLSTI 515
++R++IA L+ DPK+L+LDE TS LD+ + + L Q A + R +I+ H R
Sbjct: 149 RRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLF 208
Query: 516 RKADLIGVLQSGRVIESG 533
R D I +L SG ++ SG
Sbjct: 209 RLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 60/241 (24%), Positives = 122/241 (50%), Gaps = 32/241 (13%)
Query: 328 IEFKDVDFSYPTRPDTP-----------------TIGLVGSSGSGKSTVISLLERFYDPV 370
I+F+ V+++Y +P++P L+G +GSGKST++ L P
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 371 KGNI----LLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIGKPGASMETVV 424
+G + ++ K+ ++K +R ++G+V Q P LF ++ +++ G +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484
AA + + ++ +E +LSGGQ +R+AIA L +P++L+LDE T+ L
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKS----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
Query: 485 DAESERIVQEALDQASQ-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS-HDVLMQM 541
D ++ + + + Q G+T++++ H + + AD + +L+ G +I G+ DV ++
Sbjct: 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEV 235
Query: 542 N 542
+
Sbjct: 236 D 236
|
Length = 288 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 3e-14
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER--NIKSYNL 1049
D+ + KGL L LVG +G GKST+ + PQ G+V+ + + L
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 1050 RKLRSCIALVSQEP--TLFAGTIRQNIVYGKEV--ATEAEIRK----AAVLANAHEFISS 1101
LR +A V Q+P +F I +I + EAEI + A L +A F
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF--- 129
Query: 1102 TEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE 1160
+ +Q LS GQK+R+A+A A++ LLLDE T+ LD A + +
Sbjct: 130 ---------RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 1161 KMMV-GRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQG 1196
+++ G ++ +H + I + +D + V++ G+++ G
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-14
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 38/211 (18%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQMGLVNQEPI 401
T+ LVG SGSGKST L R + G I+ +G +I L +L+ LR + + Q+P
Sbjct: 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPY 411
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET---------KVG---- 448
S+ +G + ME + VH L G +VG
Sbjct: 412 ---ASLDPRQTVGD--SIMEPL-------RVH----GLLPGKAAAARVAWLLERVGLLPE 455
Query: 449 ---QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SERIVQEALD-QASQGR 503
++ + SGGQ+QRI IARAL +PK+++ DEA SALD +I+ LD Q G
Sbjct: 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515
Query: 504 TMIIIAHRLSTI-RKADLIGVLQSGRVIESG 533
+ I+H ++ + R + + V+ G+++E G
Sbjct: 516 AYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-14
Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 30/224 (13%)
Query: 327 EIEFK--------DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378
E+ FK V+ + P + T G SG+GK+++I+ + P KG I+L+G
Sbjct: 3 ELNFKQQLGDLCLTVNLTLPAQGITAIFGR---SGAGKTSLINAISGLTRPQKGRIVLNG 59
Query: 379 HKI----KKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVH 433
+ K + L + ++G V Q+ LF ++ N+ G + + A
Sbjct: 60 RVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG---------MAKSMVAQFD 110
Query: 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493
+ L G E + ++ LSGG+KQR+AI RAL+ P++LL+DE ++LD +R +
Sbjct: 111 KIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL 168
Query: 494 EALDQASQG-RTMII-IAHRLSTI-RKADLIGVLQSGRVIESGS 534
L++ ++ I+ ++H L I R AD + VL+ G+V G
Sbjct: 169 PYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-14
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 24/209 (11%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK-WLRSQMGLVNQE----PI 401
L+G +G+GKST++ +L Y P G+IL+DG +++ L + + ++ QE P
Sbjct: 34 ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGY--ETKVGQFGVQLSGGQK 459
+ ++ EN+ +G+ V + + + L +T + LS GQ+
Sbjct: 94 M---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY----LSIGQR 146
Query: 460 QRIAIARALIRDPKILLLDEATSALDA-ESE---RIVQEALDQASQGRTMIIIAHRLSTI 515
Q + IA+AL R+ +++ DE TS+L A E E R+++E +GR ++ ++HR+ I
Sbjct: 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEI 203
Query: 516 -RKADLIGVLQSGRVIESGSHDVLMQMNN 543
D I V + GR + + D + Q++
Sbjct: 204 FALCDAITVFKDGRYVA--TFDDMAQVDR 230
|
Length = 501 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 27/227 (11%)
Query: 328 IEFKDVDFSYP-----------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
++ ++++++Y ++G +G+GKST+ L P G IL
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 377 DGHKI--KKLQLKWLRSQMGLVNQEP--ILFSTSIKENILIGKPGASMETVVKAAQAANV 432
DG I + L LR +G+V Q+P LFS S+ +++ G ++ + +
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKLPEDEVRKR 121
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD----AES 488
D +K G E + LS GQK+R+AIA L+ +PK+L+LDE T+ LD +E
Sbjct: 122 VDNALK-RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 489 ERIVQEALDQASQGRTMIIIAHRLSTIR-KADLIGVLQSGRVIESGS 534
+++ E + G T+II H + + D + V++ GRVI G+
Sbjct: 181 MKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 5e-14
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 1001 LKIEAGKTVALVGQSGSGKSTII----GLIERFYDPQS-----GSVMVDERNIKSYNLRK 1051
L I G+ VAL+G SGSGKST++ GLI S G + E + + ++RK
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL-ARDIRK 83
Query: 1052 LRSCIALVSQEPTLFAG-TIRQNIVYGKEVAT---EAEIRKAAVLANAHEFISSTEDGYD 1107
R+ + Q+ L ++ +N++ G +T + T G
Sbjct: 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--G 1165
+ +R LSGGQ+QR+A+ARA+++ ++L DE ++LD S +V + L + G
Sbjct: 144 HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDG 203
Query: 1166 RTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
T VV H++ ++ + IV ++ G V G+
Sbjct: 204 ITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 20/258 (7%)
Query: 970 IEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029
I+EP G N FF R + + + ++ +I G+ V +G +G+GKST + ++
Sbjct: 17 IKEP--GLKGSLNHFFHRKERSIEAV-QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73
Query: 1030 YDPQSGSVMVD----ERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVYGKEVATEA 1084
P SG V V+ R + Y LRS ++ Q+ L + ++ K +
Sbjct: 74 LLPTSGKVRVNGKDPFRRREEY----LRSIGLVMGQKLQLWWDLPALDSLEVLKLIY--- 126
Query: 1085 EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144
EI + + +LS GQ+ R LA A+L P +L LDE T
Sbjct: 127 EIPDDEFAERLDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184
Query: 1145 SALDSASENLVQEALEKMMVGRTCVVV--AHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201
LD ++ ++E L++ R V+ H I D +++I G++V GT + L
Sbjct: 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
Query: 1202 LSMGNGGAYYSLIKMQAS 1219
+S+ QA
Sbjct: 245 QEQFGPYKEFSVELKQAK 262
|
Length = 325 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 349 VGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM-GLVNQEPILFST-- 405
+GS+G+GKST+++ + P G IL+DG + K R+ + V Q+P+ +
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VAKRANLLARVFQDPLAGTAPE 96
Query: 406 -SIKENILIGKPGASMETVVKAAQAANVHDF---IMKLNDGYETKVGQFGVQLSGGQKQR 461
+I+EN+ + + + A F + +L G E ++ LSGGQ+Q
Sbjct: 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA 156
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR--TMIIIAHRL-STIRKA 518
+++ A + PKILLLDE T+ALD ++ V E + + T +++ H + +
Sbjct: 157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYG 216
Query: 519 DLIGVLQSGRVI 530
+ + +L SG+++
Sbjct: 217 NRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 6e-14
Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 39/225 (17%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNI---LLDGHKIKKL------------------ 384
I ++G +GSGK+T I L P G I D KK
Sbjct: 36 IAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFK 95
Query: 385 ---QLKWLRSQMGLVNQ--EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKL 439
++K +R ++G+V Q E LF +I+++I+ G SM V +A ++L
Sbjct: 96 KIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP--VSMG--VSKEEAKKRAAKYIEL 151
Query: 440 NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD-- 497
E+ + + +LSGGQK+R+A+A L +P L+ DE T+ LD + V+E L+
Sbjct: 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG---VKEILEIF 208
Query: 498 --QASQGRTMIIIAHRL-STIRKADLIGVLQSGRVIESG-SHDVL 538
QG+T+I++ H L + + + G++I+ G ++D+L
Sbjct: 209 DNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 6e-14
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 55/217 (25%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK 383
L + +DV F R +G+ G G+G++ + L P G I LDG + +
Sbjct: 10 LSVKGAVRDVSFE--VRAGE-IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66
Query: 384 LQ-LKWLRSQMGLV----NQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMK 438
+R+ + V +E ++ S+ ENI +
Sbjct: 67 RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS------------------------ 102
Query: 439 LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES-ERIVQEALD 497
LSGG +Q++ +AR L RDP++L+LDE T +D + I + +
Sbjct: 103 -------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRE 149
Query: 498 QASQGRTMIIIAHRLST-----IRKADLIGVLQSGRV 529
A G+ +++I S+ + D I V+ GR+
Sbjct: 150 LADAGKAVLLI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 6e-14
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP 400
PD ++G +G GKST++ L R P G++ LDG I+ K + ++GL+ Q
Sbjct: 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 401 IL-FSTSIKENILIGK-PGASM---------ETVVKAAQAANVHDFIMKLNDGYETKVGQ 449
+++E + G+ P + E V KA QA + + D
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-------- 142
Query: 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMII 507
LSGGQ+QR IA L ++ I+LLDE T+ LD + + E L + + +G T+
Sbjct: 143 ---TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199
Query: 508 IAHRLS-TIRKADLIGVLQSGRVIESGS 534
+ H L+ R A + L+ G+++ G+
Sbjct: 200 VLHDLNQACRYASHLIALREGKIVAQGA 227
|
Length = 265 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 7e-14
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 43/221 (19%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIK--SYNLR 1050
I KG+ L I+ G+ AL+G +GSGKST+ I Y+ G ++ +I R
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYC 1110
I L Q P G V +F+ +G
Sbjct: 75 ARLG-IFLAFQYPPEIPG-----------VKNA-------------DFLRYVNEG----- 104
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCV 1169
SGG+K+R + + +L P + +LDE S LD + LV E + K+ G++ +
Sbjct: 105 ------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 1170 VVAH--RLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGG 1208
++ H RL K D + V+ +G++V+ G + L + G
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKG 199
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 9e-14
Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 60/274 (21%)
Query: 960 DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEA----------GKTV 1009
++P +D + ++++N+ +P R + +T ++ A G+T+
Sbjct: 296 AKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSG--LLNRVTREVHAVEKVSFDLWPGETL 353
Query: 1010 ALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS---YNLRKLRSCIALVSQEP--- 1063
+LVG+SGSGKST + R + Q G ++ + + I + L+ LR I + Q+P
Sbjct: 354 SLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413
Query: 1064 -----TLFAGTIRQNIVYGKEVATEAEIRKAAVLANA-----------HEFISSTEDGYD 1107
T+ + V+G A R A +L HEF
Sbjct: 414 LDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF--------- 464
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE----NLVQEALEKMM 1163
SGGQ+QRI +ARA+ NP +++ DEA SALD + NL+ + L++
Sbjct: 465 ----------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD-LQRDF 513
Query: 1164 VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
G + ++H ++ +++ + + V+ G++VE G
Sbjct: 514 -GIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 1e-13
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 19/185 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ + GS+GSGKS+++ ++ +P +G I G ++ Q +
Sbjct: 455 LAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPG 501
Query: 406 SIKENILIGKPGASME--TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+IK+NI+ G +V+KA Q + + I + +T +G+ G+ LSGGQ+ RI+
Sbjct: 502 TIKDNIIFGLSYDEYRYTSVIKACQ---LEEDIALFPEKDKTVLGEGGITLSGGQRARIS 558
Query: 464 IARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522
+ARA+ +D + LLD + LD +E+ I + L + +T I++ +L ++KAD I
Sbjct: 559 LARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL 618
Query: 523 VLQSG 527
+L G
Sbjct: 619 LLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 38/204 (18%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI---KSYNLRKL 1052
+G+T + G+ L G SG+GKST++ LI P +G + +I K+ + L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1053 RSCIALVSQE---------------PTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
R I ++ Q+ P + AG +I A + K +L A
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDI----RRRVSAALDKVGLLDKAKN 133
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA-SENLVQ 1156
F +QLSGG++QR+ +ARAV+ P +LL DE T LD A SE +++
Sbjct: 134 F---------------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQK 1180
E VG T ++ H + I +
Sbjct: 179 LFEEFNRVGVTVLMATHDIGLISR 202
|
Length = 222 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 33/206 (16%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL--VNQEPILF 403
+GL+G +G+GK+T ++ P G ILLD I KL + R+++G+ + QE +F
Sbjct: 33 VGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM-HKRARLGIGYLPQEASIF 91
Query: 404 -STSIKENILIGKPGASMETVVKAAQAAN--------VHDF-IMKLNDGYETKVGQFGVQ 453
++++NI+ A +E K + A + +F I L D
Sbjct: 92 RKLTVEDNIM-----AVLEIREKDLKKAERKEELDALLEEFHITHLRD-------SKAYS 139
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALD----AESERIVQEALDQASQGRTMIIIA 509
LSGG+++R+ IARAL +PK +LLDE + +D + +RI++ +G ++I
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL---KDRGIGVLITD 196
Query: 510 HRL-STIRKADLIGVLQSGRVIESGS 534
H + T+ D ++ G+V+ GS
Sbjct: 197 HNVRETLDICDRAYIISDGKVLAEGS 222
|
Length = 243 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 20/224 (8%)
Query: 320 TLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
+ Y + I + V P T ++G +G GK+T++ L G+I LDG
Sbjct: 7 NVYYGQSHI-LRGVSLEVPKGEVT---CVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62
Query: 380 KIKKLQLKWL-RSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIM 437
I KL R+ + V Q +F +++EN+L G + + + ++ + D I
Sbjct: 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG-----LAALPRRSRK--IPDEIY 115
Query: 438 KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD----AESERIVQ 493
+L + +G+ G LSGGQ+Q++AIARAL+ PK+LLLDE T + + R+++
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175
Query: 494 EALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
+ G ++++ L R+ AD V++ GRV+ SG+ D
Sbjct: 176 RLRAEG--GMAILLVEQYLDFARELADRYYVMERGRVVASGAGD 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL--VNQEPILFST 405
+ G SG+GK++++ L + G I + + L + Q P L
Sbjct: 424 ITGESGAGKTSLLRALAGLWPWGSGRISM-------------PADSALLFLPQRPYLPQG 470
Query: 406 SIKENILIGKPGA----SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
+++E + P A S +V + D +L++ ++ LSGG++QR
Sbjct: 471 TLRE--ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQR 523
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511
+A AR L+ PK + LDEATSALD E+E + + L + T+I + HR
Sbjct: 524 LAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 32/217 (14%)
Query: 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVS 1060
L + G+ + L+G +G+GK+T++ I P G+V V + K I V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVP 55
Query: 1061 QEPTL---FAGTIRQNIVYGK----------EVATEAEIRKAAVLANAHEFISSTEDGYD 1107
Q F ++ ++ G+ VA A +R A E
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL--------- 106
Query: 1108 TYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VG 1165
+R V +LSGGQ+QR+ +ARA+ P +LLLDE + LD ++ L+ E ++ G
Sbjct: 107 ---ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163
Query: 1166 RTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
++ H L+ + VV+ NG+V+ GT L
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL------ 1049
+ ++ + G+ + +VG+SGSGKST++G + P G+ R+ L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 1050 ---RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE---------AEIRKAAVLANAHE 1097
R +R+ V Q P +R + G + IR A A +
Sbjct: 79 ERRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIR-----ATAQD 130
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
++ E + SGG +QR+ +AR ++ P ++ +DE T LD + + + +
Sbjct: 131 WLEEVEIDPTR-IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 1158 ALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLL 1202
L ++ G ++V H L + A ++V++ G+VVE G +L
Sbjct: 190 LLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 65/248 (26%)
Query: 326 GEIEFKDVDFS-YPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI---LLDGHKI 381
G +DV F YP +G+VG SGSGKST++ L P G + G ++
Sbjct: 15 GGKGCRDVSFDLYPGE----VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAEL 70
Query: 382 KKLQL------KWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
+ QL + +R++ G V+Q P + G M V A AN+ +
Sbjct: 71 ELYQLSEAERRRLMRTEWGFVHQNP--------------RDGLRMR--VSAG--ANIGER 112
Query: 436 IMKLNDGYETKVGQFGV------------------QLSGGQKQRIAIARALIRDPKILLL 477
+M + + + SGG +QR+ IAR L+ P+++ +
Sbjct: 113 LMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172
Query: 478 DEATSALDAESE--------RIVQEALDQASQGRTMIIIAHRLSTIR-KADLIGVLQSGR 528
DE T LD + +V++ G +II+ H L R A + V+Q GR
Sbjct: 173 DEPTGGLDVSVQARLLDLLRGLVRDL------GLAVIIVTHDLGVARLLAQRLLVMQQGR 226
Query: 529 VIESGSHD 536
V+ESG D
Sbjct: 227 VVESGLTD 234
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-13
Identities = 62/258 (24%), Positives = 125/258 (48%), Gaps = 21/258 (8%)
Query: 962 EDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFK---GLTLKIEAGKTVALVGQSGSG 1018
+ + ++E + I+++NV Y S D+ + K ++L+++ G+ +VG SG+G
Sbjct: 265 SEVEKECEVEV-GEPIIKVRNVSKRYIS-VDRGVVKAVDNVSLEVKEGEIFGIVGTSGAG 322
Query: 1019 KSTIIGLIERFYDPQSGSV-------MVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTI 1070
K+T+ +I +P SG V VD + + I ++ QE L+ T+
Sbjct: 323 KTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382
Query: 1071 RQNIV--YGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128
N+ G E+ E KA + F E+ + + +LS G++ R+ALA
Sbjct: 383 LDNLTEAIGLELPDELARMKAVITLKMVGF---DEEKAEEILDKYPDELSEGERHRVALA 439
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIV 1185
+ ++K P I++LDE T +D ++ V ++ K + +T ++V+H + + D
Sbjct: 440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA 499
Query: 1186 VIKNGKVVEQGTQSSLLS 1203
++++GK+V+ G ++
Sbjct: 500 LMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 45/224 (20%)
Query: 1010 ALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI----KSYNLRKLRSCIALVSQEPTL 1065
A+ G+SG+GK+++I I PQ G ++++ R + K L + I V Q+ L
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 1066 FAG-TIRQNIVYG-KEVATEAEIRKAAVLANAH---EFISSTEDGYDTYCGERGVQLSGG 1120
F +R N+ YG + + A+L + S LSGG
Sbjct: 88 FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS---------------LSGG 132
Query: 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTI 1178
+KQR+A+ RA+L P +LL+DE ++LD + + LE++ + + V+H L I
Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192
Query: 1179 QK-ADNIVVIKNGKVVEQG------------------TQSSLLS 1203
+ AD +VV++ GKV G QSS+L
Sbjct: 193 LRLADRVVVLEQGKVKAFGPLEEVWASSAMRPWLPKEEQSSILK 236
|
Length = 352 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 28/224 (12%)
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
Q ++ + + G+ V +G +G+GKST + +I + P SGSV V ++ N +++
Sbjct: 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEV 73
Query: 1053 RSCIA-----------LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISS 1101
+ I + +E F I + E I + H+ I
Sbjct: 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG- 132
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
QLS G +QR+ LA+A++ +P +L+LDE T+ LD ++ ++
Sbjct: 133 --------------QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
Query: 1162 MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204
+ +T ++ H + ++ D +++I GK+V L +
Sbjct: 179 IGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 33/212 (15%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW- 388
KDV F P R + IGL+G +G+GKST++ LL Y P G + + G ++
Sbjct: 38 LKDVSFEVP-RGER--IGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSL 88
Query: 389 LRSQMGLVNQEPILFSTSIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGY 443
L G P L + +ENI L+G ++ + + +F +L D
Sbjct: 89 LGLGGGF---NPEL---TGRENIYLNGRLLGLSRKEIDEKI-----DEIIEF-SELGDFI 136
Query: 444 ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQG 502
+ V + S G K R+A A A +P ILL+DE + DA + Q L + QG
Sbjct: 137 DLPVKTY----SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG 192
Query: 503 RTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
+T+I+++H S+I++ D VL+ G++ G
Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS- 404
+ L+G SGSGK+T++ ++ G+I G + +L + ++G V Q LF
Sbjct: 31 VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DRKVGFVFQHYALFRH 88
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK--VGQFGVQLSGGQKQRI 462
++ +NI G ++ + AA + + +L + + ++ QLSGGQKQR+
Sbjct: 89 MTVFDNIAFG---LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV 145
Query: 463 AIARALIRDPKILLLDEATSALDAE 487
A+ARAL +P+ILLLDE ALDA+
Sbjct: 146 ALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 22/189 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS- 404
+ +VG SG GKST++ LL P G LL G L R L+ Q+ L
Sbjct: 41 VAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG----TAPLAEAREDTRLMFQDARLLPW 95
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+ +N+ +G G + ++A A G + ++ LSGGQKQR+A+
Sbjct: 96 KKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVAL 144
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQ---EALDQASQGRTMIIIAHRLS-TIRKADL 520
ARALI P +LLLDE ALDA + +Q E+L Q G T++++ H +S + AD
Sbjct: 145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ-QHGFTVLLVTHDVSEAVAMADR 203
Query: 521 IGVLQSGRV 529
+ +++ G++
Sbjct: 204 VLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-13
Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 327 EIEFKDVDFSYPTR-----PDTPTIG------LVGSSGSGKSTVISLLERFYDPVKGNIL 375
+E ++V F+Y P TI L+G +GSGKST+ LL Y P G IL
Sbjct: 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
LDG + Q + R V + LF L+G G K A A V +
Sbjct: 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLGPEG-------KPANPALVEKW 428
Query: 436 I--MKLNDGYETKVGQF-GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
+ +K+ E + G+ ++LS GQK+R+A+ AL + ILLLDE + D R
Sbjct: 429 LERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
Query: 493 -QEALDQASQ-GRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531
Q L + G+T+ I+H AD + +++G++ E
Sbjct: 489 YQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 5e-13
Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 30/202 (14%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPV---KGNILLDGHKIKKLQLKWLR--SQMGLV--NQ 398
+ L G +G+GKST++ +L Y P +G I+ +G ++LQ +R + G+ +Q
Sbjct: 34 VSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNIRDTERAGIAIIHQ 89
Query: 399 EPILFST-SIKENILIGK---PGASM--ETVVKAAQA--ANVHDFIMKLNDGYETKVGQF 450
E L S+ ENI +G PG M + + AQ A + KL+ T VG
Sbjct: 90 ELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL-----KLDINPATPVGNL 144
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIA 509
G GQ+Q + IA+AL + ++L+LDE T++L ++ + + D + G I I+
Sbjct: 145 G----LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYIS 200
Query: 510 HRLSTIRK-ADLIGVLQSGRVI 530
H+L+ ++ +D I V++ GR I
Sbjct: 201 HKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 14/199 (7%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEPILF-S 404
++G +G+GK+T++ ++ P +G++L G + L + ++ G+ Q+P +F +
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP-EHQIARAGIGRKFQKPTVFEN 91
Query: 405 TSIKENILIGKPG-----ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
++ EN+ + P AS+ + A + + + + + G + + LS GQK
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQK 149
Query: 460 QRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIIIAHRLSTIRK- 517
Q + I L++DPK+LLLDE + + D E+E+ E L + +++++ H + +R
Sbjct: 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAGKHSVVVVEHDMEFVRSI 208
Query: 518 ADLIGVLQSGRVIESGSHD 536
AD + VL G V+ GS D
Sbjct: 209 ADKVTVLHQGSVLAEGSLD 227
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 53/242 (21%)
Query: 326 GEIEFKDVDFS-YPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL 384
+DV F YP +G+VG SGSGK+T++ + P G + +
Sbjct: 18 PGKGCRDVSFDLYPGE----VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPR 73
Query: 385 QL---------KWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
L + LR++ G V+Q P + G M+ V A N+ +
Sbjct: 74 DLYTMSEAERRRLLRTEWGFVHQNP--------------RDGLRMQ--VSAG--GNIGER 115
Query: 436 IMKLNDGYETKVGQFGV------------------QLSGGQKQRIAIARALIRDPKILLL 477
+M + + + SGG +QR+ IAR L+ P+++ +
Sbjct: 116 LMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175
Query: 478 DEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIR-KADLIGVLQSGRVIESGS 534
DE T LD + + + L + G ++I+ H L+ R AD + V++ G+V+ESG
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235
Query: 535 HD 536
D
Sbjct: 236 TD 237
|
Length = 258 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 19/220 (8%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ + LT++I G A++G +G GKST++ + R P G V +D +I+ Y +++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1055 CIALVSQEPTLFAG-TIRQNIVYGK----EVATEAEIRKAAVLANAHEFISSTE---DGY 1106
I L++Q T T+++ + G+ + T + A + T
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM--MV 1164
DT LSGGQ+QR +A + + I+LLDE T+ LD + + + E L ++
Sbjct: 142 DT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193
Query: 1165 GRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLS 1203
G T V H L+ + A +++ ++ GK+V QG +++
Sbjct: 194 GYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-13
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 14/219 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+EL+NV F+Y + + L I+ G+ + L+G +GSGKST+ L+ Y PQSG +
Sbjct: 323 LELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D + + + R + V + LF + GK + L AH+
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHK 437
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
EDG + ++LS GQK+R+AL A+ + ILLLDE + D +
Sbjct: 438 L--ELEDGRIS-----NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490
Query: 1158 ALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194
L ++ +G+T ++H AD ++ ++NG++ E
Sbjct: 491 VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407
+ G +GSGK+T++ +L P+ G +LL+G + + R + L + I + S+
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90
Query: 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA 467
EN+ S E V +A + +G+E + QLS GQ++R+A+AR
Sbjct: 91 LENLRFWHADHSDEQVEEALARVGL--------NGFEDRPVA---QLSAGQQRRVALARL 139
Query: 468 LIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL------STIRKADL 520
L+ + +LDE T+ALD EA+ M+++ + R+ DL
Sbjct: 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 8e-13
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 34/219 (15%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---K 1051
I G+ L ++ G+T+AL+G+SGSGKST++ ++ D SG V + + + + K
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1052 LRS-CIALVSQE----PTLFAGTIRQNI----VYGKEVATEAEIRKAAVLANAHEFISST 1102
LR+ + V Q PTL A +N+ + E + ++ A+L
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNA---LENVELPALLRGESSRQSRNGAKALLEQLG------ 135
Query: 1103 EDGYDTYCGER----GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
G+R QLSGG++QR+ALARA P +L DE T LD + + + +
Sbjct: 136 -------LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 1159 LEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195
L + G T ++V H L + D + + NG++ E+
Sbjct: 189 LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 9e-13
Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ ++ I G+ +A+VG SGSGKST++ L+ P SG V+ + KL S
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-----FNGQPMSKLSS 78
Query: 1055 C---------IALVSQEPTLFAG-TIRQNI----VYGKEVATEAEIRKAAVLANAHEFIS 1100
+ + Q L T +N+ + GK+ E R A E ++
Sbjct: 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-------ALEMLA 131
Query: 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE 1160
+ G + R +LSGG++QR+A+ARA++ NP ++L DE T LD+ + + + + L
Sbjct: 132 AV--GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLG 189
Query: 1161 KMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
++ G +VV H L ++ + +++G++ + +
Sbjct: 190 ELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 9e-13
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
R + +F GL+ + AG+ + + G +GSGK+T++ ++ P +G V+++ +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
R + L ++ +N+ + ++ ++ +A + F D
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-------EDR 121
Query: 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
QLS GQ++R+ALAR +L + +LDE T+ALD A EA+
Sbjct: 122 PVA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 22/216 (10%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSCI 1056
++L I G+ V L+G +G+GK+T++G + SG ++ D ++I + + +R +
Sbjct: 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82
Query: 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY--CGER 1113
A+V + +F+ T+ +N+ G A +F + Y+ + ER
Sbjct: 83 AIVPEGRRVFSRMTVEENLAMG------------GFFAERDQFQERIKWVYELFPRLHER 130
Query: 1114 GVQ----LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTC 1168
+Q +SGG++Q +A+ RA++ P +LLLDE + L + + +E++ G T
Sbjct: 131 RIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
Query: 1169 VVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+V + K AD V++NG VV + T +LL+
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 29/183 (15%)
Query: 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049
R +++F GL+ + AG+ + L G +GSGK+T++ LI P +G++ +D +I +
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---DD 68
Query: 1050 RKLRSCIALVSQ----EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN---AHEFISST 1102
+ + +P L T+ +N+ + E+ AA L A ++
Sbjct: 69 PDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP--LAHL 123
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS----ENLVQEA 1158
GY LS GQK+R+ALAR ++ N I +LDE T+ALD+A+ L++
Sbjct: 124 PFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
Query: 1159 LEK 1161
L +
Sbjct: 174 LAQ 176
|
Length = 207 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 23/226 (10%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--GSVMVDERNIKSYNL 1049
++ I G+T G+ +A++G SGSGKST++ + + G+++ + R L
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 1050 RKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108
++ V+Q+ L+ T+R+ +V+ + + K + A IS E G T
Sbjct: 140 KR----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVIS--ELGL-T 192
Query: 1109 YCGE--------RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-ASENLVQEAL 1159
C RG+ SGG+++R+++A +L NP +L+LDE TS LD+ A+ LV
Sbjct: 193 KCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG 250
Query: 1160 EKMMVGRTCVVVAHRLST--IQKADNIVVIKNGKVVEQGTQSSLLS 1203
G+T V H+ S+ Q D+++V+ G+ + G S ++
Sbjct: 251 SLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 38/239 (15%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ +++ Y + KG+ + AG+ AL+G +G+GKST++ +I P SG++
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1038 MVDERNIKSYNLRKLRSC-IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANA 1095
+ K I LV QEP LF ++++NI++G + + +LA
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA-- 126
Query: 1096 HEFISSTEDGYDTYCGERGVQLS---------GGQKQRIALARAVLKNPMILLLDEATSA 1146
G QL +Q + + R ++++ IL+LDE T++
Sbjct: 127 ----------------ALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTAS 170
Query: 1147 LDSA-SENLVQE--ALEKMMVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSL 1201
L A +E L L VG V ++H+L I Q AD I V+++G + G + L
Sbjct: 171 LTPAETERLFSRIRELLAQGVG--IVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-12
Identities = 70/234 (29%), Positives = 101/234 (43%), Gaps = 47/234 (20%)
Query: 940 AKGSSAIRTIFTILDRKSEIDP--EDPKASEDI----EEPTKGFIELKNVFFSYPSRPDQ 993
AK +S +++ LDR +D DP + + P I + F YP P
Sbjct: 465 AKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-- 522
Query: 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053
++FK L I+ +A+VG +G GKSTI+ LI P SG+V +S +R
Sbjct: 523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF------RSAKVR--- 573
Query: 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
+A+ SQ V G ++++ +L F E + G
Sbjct: 574 --MAVFSQHH-----------VDGLDLSSN------PLLYMMRCFPGVPEQKLRAHLGSF 614
Query: 1114 GVQ----------LSGGQKQRIALARAVLKNPMILLLDEATSALD-SASENLVQ 1156
GV LSGGQK R+A A+ K P ILLLDE ++ LD A E L+Q
Sbjct: 615 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 62/249 (24%)
Query: 326 GEIEFKDVDFS-YPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI--------LL 376
+DV F YP +G+VG SGSGK+T+++ L P G + L
Sbjct: 18 PRKGCRDVSFDLYPGE----VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLR 73
Query: 377 DGHKIKKLQLKWL-RSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
D + + + + + L R++ G V+Q P + G M+ V A N+ +
Sbjct: 74 DLYALSEAERRRLLRTEWGFVHQHP--------------RDGLRMQ--VSAG--GNIGER 115
Query: 436 IMKLNDGYETKVGQFGVQ------------------LSGGQKQRIAIARALIRDPKILLL 477
+M + + + SGG +QR+ IAR L+ P+++ +
Sbjct: 116 LMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175
Query: 478 DEATSALDAESERIVQ-EALD-----QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVI 530
DE T LD VQ LD G ++I+ H L+ R A + V++ GRV+
Sbjct: 176 DEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
Query: 531 ESGSHD-VL 538
ESG D VL
Sbjct: 232 ESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 349 VGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSI 407
VG SG GKST++ ++ D G++ + ++ + +G+V Q L+ S+
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSV 92
Query: 408 KENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462
EN+ L G + V Q A +++L + K LSGGQ+QR+
Sbjct: 93 AENMSFGLKLAGAKKEEINQRVN--QVAE----VLQLAHLLDRKPKA----LSGGQRQRV 142
Query: 463 AIARALIRDPKILLLDEATSALDAE---SERIVQEALDQASQGRTMIIIAH-RLSTIRKA 518
AI R L+ +P + LLDE S LDA RI L + GRTMI + H ++ + A
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTLA 201
Query: 519 DLIGVLQSGRVIESG 533
D I VL +GRV + G
Sbjct: 202 DKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL--- 402
+GL+G +G+GK+T++ + P KG + + G K +G V Q
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-----GWRHIGYVPQRHEFAWD 63
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFI--------MKLNDGYETKVGQFGVQL 454
F S+ ++ G+ G + + V DF + L + + VG +L
Sbjct: 64 FPISVAHTVMSGRTG-----HIGWLRRPCVADFAAVRDALRRVGLTELADRPVG----EL 114
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRL- 512
SGGQ+QR+ +ARAL P +LLLDE + LD ++ ++ E + A G +++ H L
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174
Query: 513 STIRKADLIGVLQSGRVIESGSHDVL 538
+ D + VL +GRVI G+ L
Sbjct: 175 QAMATCDRV-VLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQ-MGLVNQEP 400
TI L+G SGSGKST++++L D G + L G + ++ LR++ +G V Q
Sbjct: 38 TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF 97
Query: 401 ILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
+L T + EN+ + + A + +L G ++ QLSGG++
Sbjct: 98 MLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQL--GLGKRLDHLPAQLSGGEQ 152
Query: 460 QRIAIARALIRDPKILLLDEATSALDAES-ERIVQE--ALDQASQGRTMIIIAH 510
QR+A+ARA P +L DE T LD ++ ++I +L++ G T+I++ H
Sbjct: 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
KD+ F +G++G +G+GKST++ L+ Y P G + + G ++ L
Sbjct: 43 LKDISF---EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG------KVAPL 93
Query: 390 RSQMGLVNQEPILFSTSIKENILI-----GKPGASMETVVKA-AQAANVHDFI-MKLNDG 442
+ E + +ENI + G ++ V + A + DFI +
Sbjct: 94 IELGAGFDPE-----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK-- 146
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SERIVQEALDQASQ 501
S G R+A + A +P ILLLDE + DA E+ ++ + +
Sbjct: 147 ----------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196
Query: 502 GRTMIIIAHRLSTIRKA-DLIGVLQSGRVIESGS 534
+T+++++H L I++ D L+ G++ GS
Sbjct: 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 21/196 (10%)
Query: 318 GKTLAYLRGEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
G+ LA +RG F + F+ + L G +GSGK+T++ L+ P G I L
Sbjct: 5 GEDLACVRGGRVLFSGLSFT--LAAGEALV-LTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61
Query: 377 DGHKIKKLQLKWLRSQMG-LVNQEPILFSTSIKENILIGKP--GASMETVVKAAQAANVH 433
DG I + L ++ + + ++ EN+ G + A +A +
Sbjct: 62 DGGDI---DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA 118
Query: 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493
+ L GY LS GQK+R+A+AR L+ + I +LDE T+ALDA + +
Sbjct: 119 P-LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
Query: 494 EALDQASQGRTMIIIA 509
E + ++I A
Sbjct: 168 ELIRAHLAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 6e-12
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 412 LIGKPGASMETVVKA-AQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470
L+G+ GA T++K A + I+ K+G F QLSGG+K R+A+A+ L+
Sbjct: 31 LVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYF-EQLSGGEKMRLALAKLLLE 87
Query: 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
+P +LLLDE T+ LD ES ++EAL + G T+I+++H
Sbjct: 88 NPNLLLLDEPTNHLDLESIEALEEAL-KEYPG-TVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+G +G +G+GKST + ++ + P G++ + G + + + R+ L P+
Sbjct: 31 VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET--KVGQFGVQLSGGQKQRIA 463
++E + A + + V + I + E K+GQ LS G +QR+
Sbjct: 91 YVREYLQFI---AGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQ----LSKGYRQRVG 143
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIG 522
+A+ALI DPK+L+LDE T+ LD ++ + + +T+I+ H + + D +
Sbjct: 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVI 203
Query: 523 VLQSGRVIESGSHDVLMQMN 542
++ G+++ D L N
Sbjct: 204 IINKGKIVADKKLDELSAAN 223
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 52/199 (26%), Positives = 101/199 (50%), Gaps = 13/199 (6%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHK-IKKLQLKWLRSQMGLVN--QEPILF- 403
L+G +G+GK+T++ ++ P +G +L DG + KL + ++ G+ Q+P +F
Sbjct: 36 LIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-EHRIARAGIGRKFQKPTVFE 94
Query: 404 STSIKENILI---GKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ +++EN+ + AS+ ++A + + + + + G + + LS GQ
Sbjct: 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSHGQ 152
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK- 517
KQ + I L +DPK+LLLDE + + E L + +++++ H + +R+
Sbjct: 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREI 212
Query: 518 ADLIGVLQSGRVIESGSHD 536
AD + VL G V+ GS D
Sbjct: 213 ADKVTVLHEGSVLAEGSLD 231
|
Length = 249 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNI 1044
R ++ +F L+ + AG+ + + G +G+GK+T + GL+ P +G V I
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR----PDAGEVYWQGEPI 66
Query: 1045 KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---ATEAEIRKAAVLANAHEFISS 1101
++ ++ + L Q T +N+ + + A I +A
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-- 124
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
D G QLS GQ++R+ALAR L + +LDE +ALD L
Sbjct: 125 -----DLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168
|
Length = 209 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 30/223 (13%)
Query: 991 PDQMIFKGLTLKIEAGKTVALVGQSGSGKS----TIIGLIERFYDPQSGSVMVDERNIKS 1046
Q + G++L ++ G+ +ALVG SGSGKS +G++ +G V++D + +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 1047 YNLRKLRSCIALVSQEP--------TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAH 1096
LR + IA + Q P T+ + GK AT +A L NA
Sbjct: 74 CALRGRK--IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+ ++SGG QR+ +A A+L ++ DE T+ LD ++ +
Sbjct: 132 RVLKL-----------YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180
Query: 1157 EALEKMMVGRT--CVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+ LE ++ R ++V H + + + AD++ V+ +G++VEQG
Sbjct: 181 DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-11
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 31/206 (15%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ--LKWLRSQMGLVNQEPI-- 401
+G+ G +G+G+S ++ + P G ILL+G + + R + V ++
Sbjct: 287 VGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGH 346
Query: 402 --LFSTSIKENILIG---KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV---- 452
+ S+ EN+++G K S + I K + +F V
Sbjct: 347 GLVLDLSLAENLVLGRHDKKPFSRGGFLD-------RRAIRKFA---RELIEEFDVRAPS 396
Query: 453 ------QLSGGQKQRIAIARALIRDPKILLLDEATSALDAES-ERIVQEALDQASQGRTM 505
LSGG +Q++ +AR L R P +L+ + T LD + E I + L+ G+ +
Sbjct: 397 PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAV 456
Query: 506 IIIAHRLSTI-RKADLIGVLQSGRVI 530
++I+ L I +D I V+ GR++
Sbjct: 457 LLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 33/238 (13%)
Query: 328 IEFKDVDFSYPTRP-------DTPTIG---LVGSSGSGKSTVISLLERFYDPVKGNILLD 377
I ++V SY T+ D P G ++G +G+GKST++S++ R G I +D
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI---------GKPGASMETVVKAAQ 428
G ++ K L ++ ++ QE ++ + L+ G+ E +
Sbjct: 62 GLELTSTPSKELAKKLSILKQE-NHINSRLTVRDLVGFGRFPYSQGRLTK--EDRRIINE 118
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
A + L+D Y +LSGGQ+QR IA L +D +LLDE + LD +
Sbjct: 119 AIEYLH-LEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 489 ERIVQEALDQASQ--GRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHDVLMQMNN 543
+ + L + + G+T++++ H ++ +D I L++G+V++ GS D ++Q
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFY--DPVKGNILLDGHKIKKLQLKWL-RSQMGLVNQEPIL 402
+GL G +G+GKST++ +L Y G I G +K ++ R+ + +++QE L
Sbjct: 30 VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL 89
Query: 403 F-STSIKENILIGK----PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
S+ ENI +G PG M +A N+ + D VG +G GG
Sbjct: 90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYG----GG 145
Query: 458 QKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMIIIAHRLSTIR 516
Q+Q + IA+AL + ++L+LDE +S+L + E+E ++ D + G + I+H+L+ ++
Sbjct: 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVK 205
Query: 517 K-ADLIGVLQSGRVI 530
D I V++ G+ +
Sbjct: 206 AVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 53/230 (23%), Positives = 108/230 (46%), Gaps = 21/230 (9%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
+D+ F P +G +G++G+GKST + +L P G + ++G + + ++LR
Sbjct: 41 QDISFEIP--KGE-IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 391 SQMGLV--NQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
S +GLV + + + +++ + K + + A DF+ ++ D E +
Sbjct: 98 S-IGLVMGQKLQLWWDLPALDSLEVLKLIYE----IPDDEFAERLDFLTEILD-LEGFLK 151
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR--TMI 506
+LS GQ+ R +A AL+ PK+L LDE T LD ++ ++E L + ++ R T++
Sbjct: 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 507 IIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555
+ H I D + ++ G+++ G+ L + + +
Sbjct: 212 LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE-------QFGPYKEF 254
|
Length = 325 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV---MVDERNIKSYNL--- 1049
+ ++ + G+ + +VG+SGSGK+T++ I P +G+V M D + Y +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 1050 ---RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-----ATEA----EIRKAAVLANAHE 1097
R LR+ V Q P +R + G + A A IR A +
Sbjct: 82 ERRRLLRTEWGFVHQNP---RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQ-----D 133
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
++ E D + SGG +QR+ +AR ++ P ++ +DE T LD + + + +
Sbjct: 134 WLEEVEIDLDR-IDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1158 ALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQG 1196
L ++ G V+V H L+ + AD ++V+K G+VVE G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 77/374 (20%), Positives = 137/374 (36%), Gaps = 66/374 (17%)
Query: 838 ASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLF--SSQFLTT---A 892
E T + ++ FR + K +W S +GL S A
Sbjct: 298 KVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTW-SAVGLVAVSIPIFDKTHPA 356
Query: 893 SITLT-------FWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSA 945
+ ++ F+ GR++ + A LM G+++ + +A ++
Sbjct: 357 FLEMSEEELMQEFYNNGRLL-------LKAADALGRLMLAGRDM-------TRLAGFTAR 402
Query: 946 IRTIFTILDRKSEIDPEDPKASEDIEEPTKGF-----------------IELKNVFFSYP 988
+ T+ +LD + + P+ E G I+ +N+ P
Sbjct: 403 VDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP 462
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
+ ++ + L+ ++ +G + + G +G GKS++ ++ + G + + Y
Sbjct: 463 N--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFY- 519
Query: 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVY--GKEVATEAEIRKA---AVLANAH-EFISST 1102
V Q P + GT+R I+Y E + +L N I
Sbjct: 520 ----------VPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162
E G+ V LSGG+KQRIA+AR P +LDE TSA+ E + +
Sbjct: 570 EGGWSAVQDWMDV-LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF 628
Query: 1163 MVGRTCVVVAHRLS 1176
G T V+HR S
Sbjct: 629 --GITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 41/221 (18%)
Query: 348 LVGSSGSGKSTVISLL--ERFYDPVKGNILLDGHKIKKLQLKWLRSQMG--LVNQEPILF 403
++G +GSGKST+ + Y+ G IL G + +L+ R++ G L Q P
Sbjct: 31 IMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD-ERARAGLFLAFQYP--- 86
Query: 404 STSIKENILIGKPGASMETVVKAAQAA----------NVHDF---------IMKLNDGYE 444
E I PG S +++A A ++ DF ++ +++ +
Sbjct: 87 -----EEI----PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL 137
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGR 503
+ G SGG+K+R I + + +PK+ +LDE S LD ++ +IV E +++ R
Sbjct: 138 NRSVNEG--FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR 195
Query: 504 TMIIIAH--RLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542
+ +II H RL K D + VL GR+++SG ++ ++
Sbjct: 196 SFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELE 236
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-11
Identities = 46/203 (22%), Positives = 105/203 (51%), Gaps = 22/203 (10%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNI-------LLDGHKIKKLQLKWLRSQMGLVNQE 399
G+VG+SG+GK+T+ ++ +P G + +D K + +G+++QE
Sbjct: 314 GIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373
Query: 400 PILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK-----VGQFGVQ 453
L+ ++ +N+ +E + A+ V M G++ + + ++ +
Sbjct: 374 YDLYPHRTVLDNL---TEAIGLELPDELARMKAVITLKMV---GFDEEKAEEILDKYPDE 427
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHR 511
LS G++ R+A+A+ LI++P+I++LDE T +D ++ V ++ +A + +T II++H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 512 LSTIRK-ADLIGVLQSGRVIESG 533
+ + D +++ G++++ G
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 56/201 (27%), Positives = 107/201 (53%), Gaps = 16/201 (7%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFS 404
+ L+G++G+GK+T++ L G I+ DG I Q K +R + +V + +FS
Sbjct: 34 VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93
Query: 405 -TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+++EN+ +G A + + + V++ +L +E ++ + G +SGG++Q +A
Sbjct: 94 RMTVEENLAMGGFFAERDQFQE--RIKWVYELFPRL---HERRIQRAGT-MSGGEQQMLA 147
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQ----GRTMIIIAHRLS-TIRKA 518
I RAL+ P++LLLDE + L + I+Q+ D Q G T+ ++ + ++ A
Sbjct: 148 IGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA 204
Query: 519 DLIGVLQSGRVIESGSHDVLM 539
D VL++G V+ + D L+
Sbjct: 205 DRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 54/240 (22%), Positives = 96/240 (40%), Gaps = 60/240 (25%)
Query: 977 FIELKNV-FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYD 1031
+ +N+ F + R I K + ++ G+ V ++G+ GSG ST + E
Sbjct: 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS 62
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQE----PTLFAGTIRQNIVYGKEVATEAEIR 1087
G + + K K I VS+E PTL T+R+ +
Sbjct: 63 V-EGDIHYNGIPYKE-FAEKYPGEIIYVSEEDVHFPTL---TVRETL------------- 104
Query: 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
A+ +EF+ RG+ SGG+++R+++A A++ +L D +T L
Sbjct: 105 DFALRCKGNEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGL 149
Query: 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKA-----------DNIVVIKNGKVVEQG 1196
DS++ ALE + RT V + +T D ++V+ G+ + G
Sbjct: 150 DSST------ALEILKCIRTMADVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 60/238 (25%), Positives = 115/238 (48%), Gaps = 33/238 (13%)
Query: 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGS 1036
KN+ +Y R + + ++L + +G+ V L+G +G+GK+T ++G++ R +G+
Sbjct: 7 KNLAKAYKGR---RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR----DAGN 59
Query: 1037 VMVDERNIKSYNLR-KLRSCIALVSQEPTLFAGTIRQNIVYGKEVAT-------EAEIRK 1088
+++D+ +I L + R I + QE ++F R+ VY +A AE R+
Sbjct: 60 IIIDDEDISLLPLHARARRGIGYLPQEASIF----RRLSVYDNLMAVLQIRDDLSAEQRE 115
Query: 1089 AAVLANAHEF-ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
EF I D G LSGG+++R+ +ARA+ NP +LLDE + +
Sbjct: 116 DRANELMEEFHIEHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGV 168
Query: 1148 DSASENLVQEALEKMM-VGRTCVVVAHRL-STIQKADNIVVIKNGKVVEQGTQSSLLS 1203
D S ++ +E + G ++ H + T+ + ++ G ++ GT + +L
Sbjct: 169 DPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 58/201 (28%), Positives = 107/201 (53%), Gaps = 21/201 (10%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILL-DGHKIKKL------QLKWLRS-QMGLVNQE 399
L+G SGSGKST++ + +G++L+ DG + L+ LR+ ++ +V Q+
Sbjct: 55 LMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQ 114
Query: 400 PILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSG 456
L +++EN+ G M+ + KA + V + + + L + K G+ LSG
Sbjct: 115 FALLPWRTVEENVAFG---LEMQGMPKAERRKRVDEQLELVGLAQWADRKPGE----LSG 167
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRL-S 513
G +QR+ +ARA + ILL+DE SALD +Q+ L Q+ +T++ ++H L
Sbjct: 168 GMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDE 227
Query: 514 TIRKADLIGVLQSGRVIESGS 534
++ + I +++ GR+I+ G+
Sbjct: 228 ALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 39/217 (17%)
Query: 348 LVGSSGSGKSTVIS----LLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG-LVNQEPIL 402
LVG +G+GKST+++ LL P G+I G ++ L L Q+
Sbjct: 27 LVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPP 81
Query: 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFI--MKLNDGYETKVGQFGVQLSGGQKQ 460
F+ + + + + +P + A A+ +++ + L+D V Q LSGG+ Q
Sbjct: 82 FAMPVFQYLTLHQP----DKTRTEAVASALNEVAEALGLDDKLGRSVNQ----LSGGEWQ 133
Query: 461 RIAIARALIR-------DPKILLLDEATSALDAESERIVQE-ALDQ-----ASQGRTMII 507
R+ +A +++ ++LLLDE ++LD + Q+ ALD+ QG +++
Sbjct: 134 RVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELCQQGIAVVM 188
Query: 508 IAHRLS-TIRKADLIGVLQSGRVIESGSHDVLMQMNN 543
+H L+ T+R AD + +L+ G+++ SG D ++ N
Sbjct: 189 SSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-11
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 40/242 (16%)
Query: 969 DIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028
DI+ F ++ F ++ + + L L+I+ G VA+VGQSG+GK+T++ +I
Sbjct: 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431
Query: 1029 F--------YDPQSGSVMVDERNIKSYNLRKLRSCIALV--SQEPTLFAGTIRQNI--VY 1076
Y P SG V V + + AL+ EP TI +++
Sbjct: 432 AQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRSKT 480
Query: 1077 GKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136
G A EI A L++A + + LS GQK+R LA+ + + P
Sbjct: 481 GDLNAAV-EILNRAGLSDAVLYRRKFSE------------LSTGQKERAKLAKLLAERPN 527
Query: 1137 ILLLDEATSALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQ--KADNIVVIKNGKV 1192
+LL+DE + LD + V + ++ G T +VV HR + D ++++ GKV
Sbjct: 528 VLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587
Query: 1193 VE 1194
Sbjct: 588 PV 589
|
Length = 593 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSCI 1056
++ AG+ AL+G++G+GKST++ ++ Y P +GS+++D + ++ + L + +
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
Query: 1057 ALVSQE----PTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
A++ QE P + T+ +N+ G+ + + + A E + G D
Sbjct: 82 AIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLE--HLGVDIDPDT 136
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-ASENL--VQEALEKMMVGRTCV 1169
LS GQ+Q + +A+A+ +N ++ DE TS+L + E L V L GR +
Sbjct: 137 PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GRVIL 194
Query: 1170 VVAHRLSTI-QKADNIVVIKNGKVVE 1194
V+HR+ I D I V K+G+ V
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRYVA 220
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 6e-11
Identities = 49/228 (21%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 987 YPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046
R + K ++ ++ AG+ V + G +G+G+S ++ I P SG ++++ +++
Sbjct: 266 KDRRGVTAV-KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 1047 -YNLRKLR----SCI-------ALVSQEPTLFAGTIRQNIV----YGKEVATEAEIRKAA 1090
+ R+ R + + LV ++ +N+V K + + + A
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRA 378
Query: 1091 VLANAHEFISSTEDGYDTYCGERGV---QLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
+ A E I + +D LSGG +Q++ LAR + + P +L+ + T L
Sbjct: 379 IRKFARELI----EEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434
Query: 1148 DSASENLVQEALEKM-MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193
D + + E L ++ G+ ++++ L I + +D I VI G++V
Sbjct: 435 DVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 42/199 (21%)
Query: 328 IEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKSTVISLLERFYDPVKGN 373
+EF++V Y I +VG +G+GKST++ LL P+ G
Sbjct: 322 LEFENVSKGYD---GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGT 378
Query: 374 ILLDGHKIKKLQLKWLRSQMGLVNQE--PILFSTSIKENILIGKPGASMETVVKAAQAAN 431
+ + G +K +G +Q + ++ E + G P + V A
Sbjct: 379 VKV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV-----RAY 422
Query: 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI 491
+ F D E VG LSGG+K R+ +A+ L++ P +LLLDE T+ LD ES
Sbjct: 423 LGRFGFTGEDQ-EKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 492 VQEALDQASQGRTMIIIAH 510
++EAL +G T+++++H
Sbjct: 478 LEEALLD-FEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 319 KTLAYLRGE-IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
+ L+ RGE F D+ F+ + G +G+GK+T++ +L P G +
Sbjct: 6 ENLSCERGERTLFSDLSFTL--NAGEALQ-ITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 378 GHKIKK------LQLKWLRSQMGLVNQEPILFSTSIKENILIGKP---GASMETVVKAAQ 428
G I+ L +L Q G+ + L + EN+ + + T+ +A
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGI---KTEL---TALENLHFWQRFHGSGNAATIWEALA 116
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
+ + VGQ LS GQ++R+A+AR + + +LDE +ALD E
Sbjct: 117 QVGLAGLE-------DLPVGQ----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG 165
Query: 489 ERIVQEALDQASQGRTMIIIA 509
++ + + ++++
Sbjct: 166 VALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 39/228 (17%)
Query: 1002 KIEAGKTVALVGQSGSGKS----TIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR---- 1053
++ G+ V +VG+SGSGKS I+GLI+ G VM ++ +L+++
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLID-----YPGRVMAEKLEFNGQDLQRISEKER 83
Query: 1054 -----SCIALVSQEPTLFAG---TIRQNIVYGKEV---ATEAEIRKAAVLANAHEFISST 1102
+ +A++ Q+P T+ I+ +V + R+ A+ I
Sbjct: 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP 143
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL--- 1159
D Y QLSGG QR+ +A A+ P +L+ DE T+ALD + + E L
Sbjct: 144 ASRLDVYPH----QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199
Query: 1160 ---EKMMVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSLLS 1203
E M + V++ H L+ + + A I+V+ G+VVE G +
Sbjct: 200 QQKENMAL----VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243
|
Length = 326 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390
K + F+ +G +G +G+GK+T + +L P G + + G K + K+LR
Sbjct: 38 KGISFTIE---KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 391 SQMGLV----NQE----PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDG 442
++G+V Q P++ S + I P + + + ++ ++ + +
Sbjct: 95 -RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL------ 147
Query: 443 YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--AS 500
+T V Q LS GQ+ R IA AL+ +P+IL LDE T LD ++ ++ L +
Sbjct: 148 -DTPVRQ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 501 QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
+G T+++ +H + I A + V+ GR++ G
Sbjct: 203 RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-11
Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 15/194 (7%)
Query: 318 GKTLAYLRGEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
+ LA RGE F+ + F+ + + G +G GK+T++ +L P G +
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNA---GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW 59
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP-GASMETVVKAAQAANVHDF 435
+G + + + + R+ + L + + S EN+ + ++ A AA
Sbjct: 60 NGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAA----- 114
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+ L + Q LS GQ++R+A+AR + + +LDE T+ALD ++
Sbjct: 115 -VGLTGFEDLPAAQ----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL 169
Query: 496 LDQASQGRTMIIIA 509
L ++++
Sbjct: 170 LRAHLARGGIVLLT 183
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-11
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 23/179 (12%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
SR ++M+F+GL+ + AG+ + + G +G GK+T++ ++ P SG V + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1049 LRKLRSCIALVSQ---EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA----NAHEFISS 1101
R+ + L +P L + +N+ + + A+ LA E
Sbjct: 69 DEPHRNILYLGHLPGLKPEL---SALENLHFWAAIHGGAQRTIEDALAAVGLTGFE---- 121
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE 1160
D QLS GQ++R+ALAR L + +LDE T+ALD A L+ L
Sbjct: 122 -----DLPAA----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 22/206 (10%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLVNQEPILFS 404
+ LVG +G+GKST+++ + G+I G ++ L R + L Q+ F+
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFA 86
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+ + + +P + ++ A + L+D K+G+ QLSGG+ QR+ +
Sbjct: 87 MPVWHYLTLHQPDKTRTELLN--DVAG----ALALDD----KLGRSTNQLSGGEWQRVRL 136
Query: 465 ARALIR-------DPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLS-TI 515
A +++ ++LLLDE ++LD + + L QG +++ +H L+ T+
Sbjct: 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196
Query: 516 RKADLIGVLQSGRVIESGS-HDVLMQ 540
R A +L+ G+++ SG +VL
Sbjct: 197 RHAHRAWLLKRGKLLASGRREEVLTP 222
|
Length = 248 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 31/226 (13%)
Query: 330 FKDVD-FSYPTRPDTPTIGLVGSSGSGKSTVISL----LERFYDPVKGNIL-LDGHKIKK 383
F+ VD SY + +G+VG SGSGKS V SL L + V L +G +++
Sbjct: 20 FRAVDRISY-SVKQGEVVGIVGESGSGKS-VSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77
Query: 384 LQLKWLR----SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKL 439
+ K R +++ ++ Q+P+ TS+ +G ME + K Q N +
Sbjct: 78 ISEKERRNLVGAEVAMIFQDPM---TSLNPCYTVGF--QIMEAI-KVHQGGNKKTRRQRA 131
Query: 440 NDGYETKVG---------QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
D +VG + QLSGG QR+ IA A+ PK+L+ DE T+ALD +
Sbjct: 132 ID-LLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQA 190
Query: 491 IVQEALDQASQGRTM--IIIAHRLSTIRK-ADLIGVLQSGRVIESG 533
+ E L + Q M ++I H L+ + + A I V+ +G+V+E+G
Sbjct: 191 QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236
|
Length = 326 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 1e-10
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 21/197 (10%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051
DQ + + ++ + AG + L G +G+GK+T++ LI +P+ G ++ + ++IK +L
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCT 71
Query: 1052 LRSCIALVSQE----PTLFAGTIRQNIVYGKEVATEA-EIRKAAVLANAHEFISSTEDGY 1106
+ + V P L T+R+N +Y + A I + L + I
Sbjct: 72 YQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEHLI------- 121
Query: 1107 DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS-ENLVQEALEKMMVG 1165
D CG LS GQK+++AL R + + LLDE ALD S ++ + E G
Sbjct: 122 DYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKG 177
Query: 1166 RTCVVVAHRLSTIQKAD 1182
++ +H+ + KAD
Sbjct: 178 GAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-10
Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 29/214 (13%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK-------------LQLKWLR- 390
T+ +VG SGSGKS L R + G + D +++ Q++ +R
Sbjct: 44 TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRG 103
Query: 391 SQMGLVNQEPI-----LFST--SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGY 443
+ M ++ QEP+ +F+ I E+I + + GAS E + +A + D + ++ +
Sbjct: 104 ADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAM--VEAKRMLDQV-RIPEA- 158
Query: 444 ETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR 503
+T + ++ QLSGG +QR+ IA AL P +L+ DE T+ALD + + + + +
Sbjct: 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM 218
Query: 504 TM--IIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+M I I H + + + AD + V+ G +E+GS
Sbjct: 219 SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 33/215 (15%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEPILF 403
+ L+G +G+GK+TV + L FY P G ILL G I+ L ++MG+V Q LF
Sbjct: 34 VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGVVRTFQHVRLF 92
Query: 404 -STSIKENILIGK---------------PG---ASMETVVKAAQAANVHDFIMKLNDGYE 444
++ EN+L+ + P A E + +AA + L +
Sbjct: 93 REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER----VGLLEHAN 148
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--G 502
+ G L+ GQ++R+ IAR ++ P+IL+LDE + L+ + + + E + +
Sbjct: 149 RQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN 204
Query: 503 RTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
T+++I H + + +D I V+ G + +G+ +
Sbjct: 205 VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
|
Length = 255 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 26/179 (14%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILL--DGHKIKKLQ------LKWLRSQMGLVNQ- 398
L G SGSGKST++ L Y P +G IL+ +G + + L+ R+ +G V+Q
Sbjct: 42 LHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101
Query: 399 ---EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN---DGYETKVGQFGV 452
P + + + L+ + G E A D + +LN + F
Sbjct: 102 LRVIPRVSALDVVAEPLLAR-GVPREVARAKAA-----DLLTRLNLPERLWSLAPATF-- 153
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAH 510
SGG++QR+ IAR I D ILLLDE T++LDA + +V E + +A ++G ++ I H
Sbjct: 154 --SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 329 EFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378
E +++ F Y R + LVG +GSGKST++ + P G IL+DG
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 379 HKIKKLQLKWLRSQMGLVNQ 398
I KL L+ LR ++G V Q
Sbjct: 61 KDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-10
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 17/199 (8%)
Query: 346 IGLVGSSGSGKSTVISLLE-RFY-DPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
+ ++G SGSGKST+++ L R + G IL + K K LK + G V Q+ IL+
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDDILY 152
Query: 404 S-TSIKENI----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ-FGVQLSGG 457
+++E + L+ P S+ K A +V + L T +G F +SGG
Sbjct: 153 PHLTVRETLVFCSLLRLP-KSLTKQEKILVAESVISE-LGLTKCENTIIGNSFIRGISGG 210
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESE-RIVQEALDQASQGRTMIIIAHRLST-- 514
+++R++IA ++ +P +L+LDE TS LDA + R+V A +G+T++ H+ S+
Sbjct: 211 ERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270
Query: 515 IRKADLIGVLQSGRVIESG 533
+ D + VL GR + G
Sbjct: 271 YQMFDSVLVLSEGRCLFFG 289
|
Length = 659 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 42/218 (19%)
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL---------RKLRSCI 1056
G+ + +VG+SGSGK+T++ + P +G V R+ + +L R LR+
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 1057 ALVSQEPTLFAGTIRQNIVYGKEVATE---------AEIRKAAV--LANAHEFISSTEDG 1105
V Q P +R + G + +IR A L + +D
Sbjct: 92 GFVHQHP---RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL 148
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-- 1163
T+ SGG +QR+ +AR ++ +P ++ +DE T LD + VQ L ++
Sbjct: 149 PTTF--------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS----VQARLLDLLRG 196
Query: 1164 ----VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
+G V+V H L+ + A ++V+K G+VVE G
Sbjct: 197 LVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 24/239 (10%)
Query: 969 DIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028
+ G I F + KG++ IE G+ V +G +G+GK+T + ++
Sbjct: 11 RVYSKEPGLIGSLKSLFK-RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69
Query: 1029 FYDPQSGSVMVDERNIKSYNLRKLRSCIALV-SQEPTLF-----AGTIRQNI-VYG-KEV 1080
P SG V V + +K I +V Q+ L+ + +Y
Sbjct: 70 LLQPTSGEVRVAG-LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLL 1140
+ + + + L + E + + QLS GQ+ R +A A+L P IL L
Sbjct: 129 RFKKRLDELSELLDLEELLDTPVR-----------QLSLGQRMRAEIAAALLHEPEILFL 177
Query: 1141 DEATSALDSASENLVQEALEKMMVGR--TCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196
DE T LD ++ ++ L++ R T ++ +H + I+ A ++VI G+++ G
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-10
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAHR 511
LSGG+KQR+ +AR L ++P + L DE T LD ++ ++V AL++A + G +M++ +H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 512 LSTIRK-ADLIGVLQSGRVIESGSHD 536
I +D L++G + E G+ D
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPD 254
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-10
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 46/248 (18%)
Query: 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS----TIIGLIERF-YDPQSGS 1036
N+ F + + + L+ ++ G+T+A+VG+SGSGKS ++ L+E+ Q
Sbjct: 19 NIAFMQEQQKIAAV-RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
Query: 1037 VMVDERNIKSYNL--------RKLRSC-IALVSQEPTL-----------FAGTIRQNIVY 1076
+++ R+ + L R +R +A++ QEP A +IR +
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA 137
Query: 1077 GKEVATEAEIR--KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134
+E A R + A +S QLSGG +QR+ +A A+
Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCR 186
Query: 1135 PMILLLDEATSALDSASE----NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKN 1189
P +L+ DE T+ALD + L++ ++M +G + + H + + + AD ++V+
Sbjct: 187 PAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFITHDMGVVAEIADRVLVMYQ 244
Query: 1190 GKVVEQGT 1197
G+ VE G+
Sbjct: 245 GEAVETGS 252
|
Length = 623 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 348 LVGSSGSGKS-TVISLLERFYDPVK---GNILLDGHKIKKLQLKWLRSQMGLVNQEP--- 400
LVG SGSGKS T + L V+ G +LLDG + L+ ++ + Q P
Sbjct: 34 LVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR--GRKIATIMQNPRSA 91
Query: 401 ----ILFSTSIKENIL-IGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
T +E L +GKP A++ ++A N ++KL + +
Sbjct: 92 FNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAAR-VLKL----------YPFE 140
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAES--------ERIVQEALDQASQGRTM 505
+SGG QR+ IA AL+ + ++ DE T+ LD + E IVQ+ + M
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK------RALGM 194
Query: 506 IIIAHRLSTI-RKADLIGVLQSGRVIESGS 534
+++ H + + R AD + V+ GR++E G
Sbjct: 195 LLVTHDMGVVARLADDVAVMSHGRIVEQGD 224
|
Length = 254 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 40/170 (23%)
Query: 348 LVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
L+G SG+GK+T++ +L + G IL++G + K + G V Q+ +
Sbjct: 38 LMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN----FQRSTGYVEQQDVHSPN 93
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
TV +A + F L LS Q++R+ I
Sbjct: 94 L---------------TVREALR------FSALLRG------------LSVEQRKRLTIG 120
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLST 514
L P IL LDE TS LD+++ + L + A G+ ++ H+ S
Sbjct: 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL------ 1052
L+ ++ G+ L+G +G+GK+T++ +I PQ G V+ D +L KL
Sbjct: 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTKLPEHRIA 79
Query: 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLAN-AHEFISSTEDGYDTYC 1110
R+ I Q+PT+F T+R+N+ E+A R +V A+ + D
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENL----ELALN---RDKSVFASLFARLRAEERRRIDELL 132
Query: 1111 G------ERGVQ---LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
ER LS GQKQ + + + ++P +LLLDE + + A E L+
Sbjct: 133 ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 1162 MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ + +VV H + +++ AD + V+ G V+ +G+
Sbjct: 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV----DERNIKSYNLR 1050
+ + ++L + AG+ V L G SGSGKST++ + Y P G ++V + ++ + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1051 KL----RSCIALVSQ-------EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA--NAHE 1097
++ R+ I VSQ L + + ++ A + A +L N E
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGVPREVARAKAADLLTRLNLPE 143
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
+ S SGG++QR+ +AR + + ILLLDE T++LD+ + +V E
Sbjct: 144 RLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193
|
Length = 235 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 40/235 (17%)
Query: 334 DFSYPTRPDTPTIGLVGSSGSGKSTVISLLE-RFYDP-------VKGNILLDG---HKIK 382
D S P T L+G +G+GKST++ L V G++ L+G I
Sbjct: 19 DLSLRIEPGRVT-ALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77
Query: 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHD-----FI 436
+L LR+ + Q F+ S +E +L+G+ P A + A A D
Sbjct: 78 APRLARLRAVLPQAAQPA--FAFSAREIVLLGRYPHA------RRAGALTHRDGEIAWQA 129
Query: 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARAL---------IRDPKILLLDEATSALD-A 486
+ L VG+ LSGG+ R+ AR L + P+ LLLDE T+ALD A
Sbjct: 130 LALAGA-TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLA 188
Query: 487 ESERIVQEALDQASQGRTMII-IAHRLS-TIRKADLIGVLQSGRVIESGS-HDVL 538
R++ A ++ I H + R AD I +L G ++ G+ DVL
Sbjct: 189 HQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 11/216 (5%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--ERFYDPQSGSVMVDERNIKSYNL 1049
D+ I KG+ L ++ G+ A++G +GSGKST+ I Y+ SG+++ +++
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 1050 -RKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTED--G 1105
+ R+ + L Q P G + + + A + L + + + + G
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 1106 YDTYCGERGVQ--LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163
D R V SGG+K+R + + L P + +LDE S LD + +V E + ++
Sbjct: 132 MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR 191
Query: 1164 V-GRTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
R+ +++ H RL K D + V+ +G++V+ G
Sbjct: 192 EPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 345 TIGLVGSSGSGKS-TVISLLERFYDP--VKGNILLDGHKIKKL---QLKWLRS-QMGLVN 397
T+G+VG SGSGKS T +L+ + G+ +G +I L +L LR+ Q+ ++
Sbjct: 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIF 103
Query: 398 QEPILFSTSIKENILIGKPGASMETVV--KAAQAANVHDFIMKLNDGYE-----TKVGQF 450
Q+P+ TS+ + +G+ ME ++ K A + +++ D + ++ +
Sbjct: 104 QDPM---TSLNPYMRVGE--QLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY 158
Query: 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIII 508
+ SGG +QR+ IA AL+ PK+L+ DE T+ALD + + L++ + +I+I
Sbjct: 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218
Query: 509 AHRLSTIRK-ADLIGVLQSGRVIESGS 534
H L + D + V+ +GR +E G+
Sbjct: 219 THDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-09
Identities = 42/185 (22%), Positives = 62/185 (33%), Gaps = 61/185 (32%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGN-ILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
I +VG GSGK+T+ L R P G I +DG I + L L
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------- 50
Query: 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
VG SG + R+A
Sbjct: 51 ----------------------------------------LIIVGGKKASGSGELRLRLA 70
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALD-------QASQGRTMIIIAHRLSTIR 516
+A A P +L+LDE TS LDAE E ++ + ++ + T+I+ + +
Sbjct: 71 LALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 517 KADLI 521
A L
Sbjct: 131 PALLR 135
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 31/175 (17%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ L+NV S+ R + ++L+++ GK + L+G +G+GKST++ ++ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1038 MVDERNIKSYNLRKLRSCIAL---VSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLA 1093
+ + Y +KL L V++ L GT +++I+ K V +A L
Sbjct: 62 KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV-------QAGHLI 114
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
+A +LSGG+ QR+ LARA+L P +L+LDE T +D
Sbjct: 115 DAPM-----------------QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 53/259 (20%), Positives = 106/259 (40%), Gaps = 48/259 (18%)
Query: 286 PNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIE---FKDVDFSYPTRP- 341
+ F + T A+ + D + N +I ++ + IE ++++ +P
Sbjct: 356 GPIKFKNVTKTFASEL----DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLE--IKPG 409
Query: 342 DTPTIGLVGSSGSGKSTVISLLERF--------YDPVKGNILLDGHKIKKLQLKWLRSQM 393
D + VG SG+GK+T++ ++ Y P G + + + + L +
Sbjct: 410 DVVAV--VGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEF 467
Query: 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453
G V L S G A++E ++ A ++ + K ++
Sbjct: 468 GEVTILEHLRSK-------TGDLNAAVE-ILNRAGLSDAVLYRRKFSE------------ 507
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHR 511
LS GQK+R +A+ L P +LL+DE + LD + V + + ++ G T+I++ HR
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 512 LSTIRKADLIGVLQSGRVI 530
++ L+ +I
Sbjct: 568 ------PEVGNALRPDTLI 580
|
Length = 593 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 48/193 (24%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-ST 405
GL+G +G+GK+T ++ +P +G I +G + + ++++G + +E L+
Sbjct: 32 GLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KNRIGYLPEERGLYPKM 87
Query: 406 SIKENI--LIGKPGASMETVVKAAQAANVHDFIMKLN-DGYETKVGQFGVQLSGGQKQRI 462
++++ + L G + K QA ++ +L G +TK + +LS G +Q+I
Sbjct: 88 TVEDQLKYLAELKGMPKAEIQKKLQA-----WLERLEIVGKKTKKIK---ELSKGNQQKI 139
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEA-LDQASQGRTMIIIAHRLSTIRK-ADL 520
A+I +P++L+LDE S LD + ++++A + +G T+I +HR+ + + D
Sbjct: 140 QFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDR 199
Query: 521 IGVLQSGRVIESG 533
+ +L+ G+ + G
Sbjct: 200 LLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 34/242 (14%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIG-LIERFYDPQ-------SGSVMVD 1040
+R + I + L+L+IE G+ AL+G++G+GKST++ L +G V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 1041 ER---NIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
I + L +LR+ + +Q FA + R+ ++ G+ R+A L +
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPA--FAFSAREIVLLGR----YPHARRAGALTHRDG 123
Query: 1098 FISS---TEDGYDTYCGERGVQLSGGQKQRIALARAVLK---------NPMILLLDEATS 1145
I+ G G LSGG+ R+ AR + + P LLLDE T+
Sbjct: 124 EIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 1146 ALDSASENLVQEALEKMM----VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
ALD A ++ + + + ++ +G +V L+ + AD I ++ +G +V G + +
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAPADV 242
Query: 1202 LS 1203
L+
Sbjct: 243 LT 244
|
Length = 272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 5e-09
Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 38/246 (15%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERF-YDPVK-GNILLDGHKI 381
L G + +DV F+ R +G+ G G+G++ + L F P G ILLDG +
Sbjct: 269 LSGGGKVRDVSFT--VRAGE-ILGIAGLVGAGRTELARAL--FGARPASSGEILLDGKPV 323
Query: 382 KKLQ-LKWLRSQMGLV----NQEPILFSTSIKENI----LIGKPGASMETVVKAAQAANV 432
+ +++ + V E ++ SI ENI L + + + + A
Sbjct: 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGL--IDRRKERALA 381
Query: 433 HDFIMKLN---DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD--AE 487
+I +L E +G LSGG +Q++ +AR L DPK+L+LDE T +D A+
Sbjct: 382 ERYIRRLRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAK 437
Query: 488 SE--RIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVI-----ESGSHDVLM 539
+E R+++E A++G+ +++I+ L + +D I V++ GR++ E + + +M
Sbjct: 438 AEIYRLIREL---AAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIM 494
Query: 540 QMNNGE 545
G
Sbjct: 495 AAAFGG 500
|
Length = 500 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 6e-09
Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 50/207 (24%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055
+ ++ ++ AG+ V + G G+G++ + + P SG + +D + + + R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 1056 -IALVSQEPT---LFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYC 1110
IA V ++ L ++ +NI
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIALS--------------------------------- 102
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVV 1170
LSGG +Q++ LAR + ++P +L+LDE T +D ++ + + ++ V+
Sbjct: 103 ----SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 1171 VAHRLST-----IQKADNIVVIKNGKV 1192
+ +S+ + D I+V+ G++
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-09
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 62/205 (30%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILL-DGHKIKKLQLKWLRSQMGLVNQEPILFS 404
IG++G +G+GKST++ ++ G G K+ G + QEP L
Sbjct: 34 IGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV------------GYLPQEPQLDP 81
Query: 405 T-SIKENILIG-------------------KPGASMETVVK-------AAQAANVHDFIM 437
T +++EN+ G +P A M+ ++ AA+ D
Sbjct: 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141
Query: 438 KLN---DG-----YETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES- 488
KL D ++ V + LSGG+++R+A+ R L+ P +LLLDE T+ LDAES
Sbjct: 142 KLEIAMDALRCPPWDADVTK----LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESV 197
Query: 489 ---ERIVQEALDQASQGRTMIIIAH 510
E+ +QE G T++ + H
Sbjct: 198 AWLEQHLQE-----YPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 65/223 (29%)
Query: 350 GSSGSGKSTVISLLERF--YDPVKGNILLDGHKIKKLQLKWLRSQMGL------------ 395
G +GSGKST+ ++ Y ++G+IL G I L+ + R+ +G+
Sbjct: 40 GPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIPG 98
Query: 396 VNQE--------------------PILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
V+ P+ F I E + + M+ F
Sbjct: 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKL----VGMDPS-----------F 143
Query: 436 IMK-LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
+ + +N+G+ SGG+K+R I + + D ++ +LDE S LD ++ +I+ E
Sbjct: 144 LSRNVNEGF-----------SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 495 ALDQ-ASQGRTMIIIAH--RLSTIRKADLIGVLQSGRVIESGS 534
+++ + ++I+I H RL K D + V+Q+G++I++G
Sbjct: 193 GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 59/216 (27%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKST---------IIGLIERFYDPQSGSVMVDER 1042
+ + ++ ++ G AL+G+SG+GK+T G+I G ++++ R
Sbjct: 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGR 71
Query: 1043 NIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISS 1101
+ R V Q+ T+R EA +R +A+L
Sbjct: 72 PLDKNFQRS----TGYVEQQDVHSPNLTVR-----------EA-LRFSALL--------- 106
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
RG LS Q++R+ + + P IL LDE TS LDS + + L+K
Sbjct: 107 -----------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153
Query: 1162 M-MVGRTCVVVAHRLS--TIQKADNIVVIK-NGKVV 1193
+ G+ + H+ S +K D ++++K GK V
Sbjct: 154 LADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 7e-09
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 54/180 (30%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGN-ILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
IG++G +G+GKST++ ++ +G G K+ G + QEP L
Sbjct: 36 IGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV------------GYLPQEPQLDP 83
Query: 405 T-SIKENI-------------------LIGKPGASMETVVK-------AAQAANVHDFIM 437
+++EN+ +P A + + AA+ D
Sbjct: 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143
Query: 438 KLN---------DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
+L + KV + LSGG+++R+A+ R L+ P +LLLDE T+ LDAES
Sbjct: 144 QLEIAMDALRCPPW-DAKVTK----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 8e-09
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059
+ + G ALVG +GSGKST+ + F SG + + + + L+K + +A V
Sbjct: 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-ALQK--NLVAYV 83
Query: 1060 SQE-------PTLFA-----------GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISS 1101
Q P L G +R+ +++ T A + + ++ H I
Sbjct: 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAA-LARVDMVEFRHRQI-- 140
Query: 1102 TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
GE LSGGQK+R+ LARA+ + ++LLDE + +D +E + L +
Sbjct: 141 ---------GE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 1162 MM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGN 1206
+ G+T +V H L ++ + + V+ G V+ G + + N
Sbjct: 188 LRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAEN 233
|
Length = 272 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 8e-09
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
+LSGGQ+QR+A+ RA++R+P + L DE S LDA
Sbjct: 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 24/207 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFS 404
+GL+G +G+GK+T ++ GNI++D I L L R +G + QE +F
Sbjct: 32 VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91
Query: 405 T-SIKENIL----IGKPGASMETVVKAAQAANVHDF-IMKLNDGYETKVGQFGVQLSGGQ 458
S+ +N++ I ++ + +A + + +F I L D G LSGG+
Sbjct: 92 RLSVYDNLMAVLQIRDDLSAEQREDRANEL--MEEFHIEHLRD-------SMGQSLSGGE 142
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAES----ERIVQEALDQASQGRTMIIIAHRL-S 513
++R+ IARAL +PK +LLDE + +D S +RI++ D G ++I H +
Sbjct: 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRE 199
Query: 514 TIRKADLIGVLQSGRVIESGSHDVLMQ 540
T+ + ++ G +I G+ ++Q
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 13/213 (6%)
Query: 996 FK---GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
FK L+L ++ G+ ++G +G+GK+T++ +I P GSV+ ++ ++
Sbjct: 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74
Query: 1053 -RSCIALVSQEPTLFAG-TIRQNIVY----GKEV-ATEAEIRKAAVLANAHEFISSTEDG 1105
R+ I Q+PT+F T+ +N+ K V A+ A E + + G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--G 132
Query: 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG 1165
LS GQKQ + + ++++P +LLLDE + + E L+ +
Sbjct: 133 LADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGK 192
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ VVV H + ++ AD + V+ G V+ +G+
Sbjct: 193 HSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 62/203 (30%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLD-GHKIKKLQLKWLRSQ------------- 392
GL+G++G GKST + +L +P GN+ LD ++ KL Q
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKL------RQDQFAFEEFTVLDT 84
Query: 393 --MG-----LVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN--DGY 443
MG V QE ++ I P S E +K A D +K DGY
Sbjct: 85 VIMGHTELWEVKQE--------RDRIY-ALPEMSEEDGMKVA------DLEVKFAEMDGY 129
Query: 444 --ETKVGQ------------FGV--QLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487
E + G+ +G+ +++ G K R+ +A+AL +P ILLLDE T+ LD
Sbjct: 130 TAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189
Query: 488 SERIVQEALDQASQGRTMIIIAH 510
+ R +++ L++ + TMIII+H
Sbjct: 190 TIRWLEDVLNERNS--TMIIISH 210
|
Length = 530 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG-RTMIIIAH 510
V SGG+K+R I + + +P++ +LDE+ S LD ++ +IV + ++ G R+ II+ H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
Query: 511 --RLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541
R+ K D + VL GR+++SG ++ Q+
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQL 236
|
Length = 248 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 35/242 (14%)
Query: 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
+I + + S+ P + K + L + G+ AL+G++G+GKST++ ++ ++P
Sbjct: 2 ATPYISMAGIGKSFG--PVHAL-KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58
Query: 1034 SGSVMVDERNIKSYN--------------LRKLRSCIALVSQEPTLFAGTIRQNIVYGKE 1079
G++ ++ +YN + + S I ++ L+ G V G
Sbjct: 59 KGTITINN---INYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVN 115
Query: 1080 VATEAEIR-KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138
+ E+R +AA++ + D LS KQ + +A+ ++ + ++
Sbjct: 116 IIDWREMRVRAAMML----LRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVI 167
Query: 1139 LLDEATSALDSASEN---LVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
++DE TS+L + + L+ L K G V ++H+L+ I++ D V+K+G V
Sbjct: 168 IMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225
Query: 1195 QG 1196
G
Sbjct: 226 SG 227
|
Length = 510 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-08
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 332 DVDFSYPTRP-------DTPTIGLV---GSSGSGKSTVISLLERFYDPVKGNILLDGHKI 381
++DF Y +P P GL+ GS+G+GK+T++ L+ +P KG IL + I
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 382 KKLQLKWLRSQMGLVNQEP-ILFSTSIKENIL--IGKPGASMET--VVKAAQAANVHDFI 436
KK L + Q+ V I +++EN L I ++ + + ++ D+
Sbjct: 66 KK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES-ERIVQEA 495
L LS GQK+++A+ R + K+ LLDE ALD S I+ +
Sbjct: 125 CGL--------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
Query: 496 LDQASQGRTMIIIAHRLSTIRKAD 519
+ ++G +++ +H+ + KAD
Sbjct: 171 QEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 65/198 (32%)
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065
G+ + +VG GSGK+T+ + R I + ++
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELG------------------PPGGGVIYIDGEDILE 43
Query: 1066 FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125
I+ G + SG + R+
Sbjct: 44 EVLDQLLLIIVG----------------------------------GKKASGSGELRLRL 69
Query: 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALE-------KMMVGRTCVVVAHRLSTI 1178
ALA A P +L+LDE TS LD+ E L+ E K T ++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 1179 QKA------DNIVVIKNG 1190
A D +V+
Sbjct: 130 GPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 32/157 (20%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-- 405
L+G +G+GKST++ ++ P +G I +G +L+ +G V Q+ L +T
Sbjct: 35 LLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------KLR-----IGYVPQKLYLDTTLP 83
Query: 406 -SIKENILIGKPG---ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
++ + + +PG + +K QA ++ D M+ +LSGG+ QR
Sbjct: 84 LTVNRFLRL-RPGTKKEDILPALKRVQAGHLIDAPMQ--------------KLSGGETQR 128
Query: 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQ 498
+ +ARAL+ P++L+LDE T +D + + + +DQ
Sbjct: 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165
|
Length = 251 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 21/204 (10%)
Query: 337 YPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR-SQ--- 392
YP R + LVG +G+GKST++ +L Y G+IL G K++ + SQ
Sbjct: 28 YPGR----VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFNGPKSSQEAG 80
Query: 393 MGLVNQE-PILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGY--ETKVG 448
+G+++QE ++ +I ENI +G+ + A + +LN + + VG
Sbjct: 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG 140
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMII 507
+ LS G++Q + IA+ L + K++++DE T AL D E+E + + + SQGR ++
Sbjct: 141 E----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVY 196
Query: 508 IAHRLSTIRK-ADLIGVLQSGRVI 530
I+HRL I + D + V + G+ I
Sbjct: 197 ISHRLKEIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 986 SYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045
P P + I K ++L G + ++G +G+GKST++ ++ +G IK
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIK 69
Query: 1046 SYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYG--------------------------K 1078
+ + QEP L T+R+N+ G
Sbjct: 70 ----------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDA 119
Query: 1079 EVATEAEIRKAAVLANAHEFISSTEDGYDTY-C--GERGVQ-LSGGQKQRIALARAVLKN 1134
+A +AE+++ A+A + E D C + V LSGG+++R+AL R +L
Sbjct: 120 LLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSK 179
Query: 1135 PMILLLDEATSALDSAS 1151
P +LLLDE T+ LD+ S
Sbjct: 180 PDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERIV 492
F++ + GY T +GQ LSGG+ QR+ +A L +P + +LDE ++ L + +
Sbjct: 70 FLIDVGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128
Query: 493 QEALDQ-ASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESG 533
E + G T+I+I H L + AD I G+V+ SG
Sbjct: 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 51/204 (25%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
IG++G +G GK+T + LL P +G + L++
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEG-------SEEDLKV------------------- 403
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDF-----IMK---LNDGYETKVGQFGVQLSGG 457
S K + ++E ++++A + I+K L D E V + LSGG
Sbjct: 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGG 459
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR--TMIIIAHRLSTI 515
+ QR+AIA AL R+ + LLDE ++ LD E IV + + + + T +++ H + I
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519
Query: 516 RKADLIGVLQSGRVI----ESGSH 535
D + S R+I E G H
Sbjct: 520 ---DYV----SDRLIVFEGEPGKH 536
|
Length = 591 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 45/262 (17%)
Query: 309 PVINSEDEIGKTLAYLRGEIEFKDVDFS-YPTRPDTPTIGLVGSSGSGKSTVISLLERFY 367
PV+ ED L GE F+++ +GL G G+G++ L E Y
Sbjct: 267 PVLTVED--------LTGE-GFRNISLEVRAGE----ILGLAGVVGAGRT---ELAETLY 310
Query: 368 ---DPVKGNILLDGHKIKKLQLKWLRSQMGLV-----NQEPILF-STSIKENI---LIGK 415
G I+L+G +I L R GLV Q L+ + N+ +
Sbjct: 311 GLRPARGGRIMLNGKEINALSTA-QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369
Query: 416 PGASMETVVKAAQAANVHDFI-MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474
G ++ + A + +K N E LSGG +Q++ IA+ L P++
Sbjct: 370 RGFWIKPARENAVLERYRRALNIKFNHA-EQAART----LSGGNQQKVLIAKCLEASPQL 424
Query: 475 LLLDEATSALDAESER--IVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVI- 530
L++DE T +D S R I Q A+Q ++ I+ L I + AD + V+ G +
Sbjct: 425 LIVDEPTRGVDV-SARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483
Query: 531 ----ESGSHDVLMQMNNGEGGA 548
+ + D +M++ GE A
Sbjct: 484 ALTGAAINVDTIMRLAFGEHQA 505
|
Length = 510 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 40/243 (16%)
Query: 321 LAYLRGEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
+++ RG F ++ + P T ++G SG GK+T++ L+ P G IL DG
Sbjct: 13 VSFTRGNRCIFDNISLTVPRGKIT---AIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69
Query: 380 KIKKL---QLKWLRSQMGLVNQEPILFS-TSIKENIL------IGKPGASMETVVKAAQA 429
I + +L +R +M ++ Q LF+ ++ +N+ P + + V
Sbjct: 70 NIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV----- 124
Query: 430 ANVHDFIMKLNDGYETKVGQFGV------QLSGGQKQRIAIARALIRDPKILLLDEATSA 483
+MKL VG G +LSGG +R A+ARA+ +P +++ DE
Sbjct: 125 ------MMKLE-----AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVG 173
Query: 484 LDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
D + ++ + + + + G T ++++H + + AD ++ +++ GS L Q
Sbjct: 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL-Q 232
Query: 541 MNN 543
N
Sbjct: 233 ANP 235
|
Length = 269 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-07
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 61/209 (29%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK---KLQ-LK---------WLRSQ 392
IG+VG +G GK+T LL P +G + + +K K Q +K LRS
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPDYDGTVEDLLRSI 424
Query: 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
L S+ K I+ KP ++L + V
Sbjct: 425 ------TDDLGSSYYKSEII--KP--------------------LQLERLLDKNVKD--- 453
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR--TMIIIAH 510
LSGG+ QR+AIA L RD + LLDE ++ LD E V +A+ + ++ R T +++ H
Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDH 512
Query: 511 RLSTIRKADLIGVLQSGRVI----ESGSH 535
+ I D I S R++ E G H
Sbjct: 513 DIYMI---DYI----SDRLMVFEGEPGKH 534
|
Length = 590 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--- 1045
R ++++F GL+ + AG+ V + G +G+GK++++ ++ P +G V+ I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 1046 -SYNLRKL-----RSCI--ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKA--AV-LAN 1094
Y+ + L + I L + E F + + + +A V LA
Sbjct: 70 DEYH-QDLLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLA- 120
Query: 1095 AHEFISSTEDGY-DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
G+ D QLS GQ++R+ALAR L + +LDE +A+D
Sbjct: 121 ----------GFEDVPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA 166
Query: 1154 LVQEALE 1160
++ L
Sbjct: 167 RLEALLA 173
|
Length = 204 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 43/237 (18%)
Query: 993 QMIFKGL------TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046
M F GL L++ + V+L+G +G+GK+T+ + FY P G++++ ++I+
Sbjct: 12 MMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG 71
Query: 1047 Y---------------NLRKLRSCIA----LVSQ----EPTLFAGTIRQNIVYGKEVATE 1083
++R R LV+Q + LF+G ++ E +E
Sbjct: 72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE--SE 129
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143
A R A L E + E + + L+ GQ++R+ +AR ++ P IL+LDE
Sbjct: 130 ALDRAATWL----ERVGLLE-----HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 1144 TSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ L+ + E + ++ T +++ H + + +D I V+ G + GT
Sbjct: 181 AAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
Length = 255 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 34/229 (14%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC- 1055
G L + G+ +ALVG++G+GKST++ ++ Y +GS++ + + + +
Sbjct: 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80
Query: 1056 IALVSQEPTLFAG-TIRQNIVYGKEVAT------------EAEIRKAAVLANAHEFISST 1102
I ++ QE L TI +NI G+E EA+ +LA + SS
Sbjct: 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD----KLLARLNLRFSS- 135
Query: 1103 EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL-DSASENLVQEALEK 1161
D GE LS G++Q + +A+ + ++++DE T AL D+ +E+L + E
Sbjct: 136 ----DKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL 187
Query: 1162 MMVGRTCVVVAHRLSTI-QKADNIVVIKNGK-----VVEQGTQSSLLSM 1204
GR V ++HRL I + D++ V ++G+ V T+ SL+ M
Sbjct: 188 KSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEM 236
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 52/217 (23%), Positives = 93/217 (42%), Gaps = 49/217 (22%)
Query: 335 FSYPTRPDTPTIGLVGSSGSGKSTVISLLE--------RFYDPVKGNILLDGHKIKKLQ- 385
+ PT +G++G +G GKST + +L R+ DP + ++ + +LQ
Sbjct: 92 YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQN 151
Query: 386 -LKWLRS---------QMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
K L Q V+ P + + E ++K D
Sbjct: 152 YFKKLYEGELRAVHKPQY--VDLIPKVVKGKVGE-------------LLKKVDERGKFDE 196
Query: 436 IMK---LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE--- 489
+++ L + + V + LSGG+ QR+AIA AL+RD + DE +S LD
Sbjct: 197 VVERLGLENVLDRDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252
Query: 490 -RIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVL 524
R+++E A G+ +I++ H L+ + +D + +L
Sbjct: 253 ARVIREL---AEDGKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 447 VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRT 504
+ F +L+ G+ Q++ IA AL P++L+ DE T+A++ ++ + L + +Q T
Sbjct: 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTT 211
Query: 505 MIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539
+++I+H L + + AD I VL G+ +E+ L+
Sbjct: 212 ILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 51/221 (23%)
Query: 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038
E++NV + + + K + +++ G +AL+G +G GK+T++ L+ SG +
Sbjct: 321 EMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377
Query: 1039 VDERNIKSYNLRKLRSCIALVSQ-----EPTLFAGTIRQNIVYGKEVATEAEI--RKAAV 1091
KL +A Q +P T+ N+ GK+ E + R V
Sbjct: 378 CGT---------KLE--VAYFDQHRAELDPE---KTVMDNLAEGKQ---EVMVNGRPRHV 420
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQ----LSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
L +F+ + R + LSGG++ R+ LAR LK +L+LDE T+ L
Sbjct: 421 LGYLQDFLFHPK---------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL 471
Query: 1148 DSASENLVQEALEKMMVGR--TCVVVAH-RLSTIQKADNIV 1185
D E L E LE+++ T ++V+H R Q DN V
Sbjct: 472 D--VETL--ELLEELLDSYQGTVLLVSHDR----QFVDNTV 504
|
Length = 635 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIR---DPKILLLDEATSALDAESERIVQEALDQ 498
GY K+GQ LSGG+ QRI +A+ L + + +LDE T+ L + + E L +
Sbjct: 159 GY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217
Query: 499 -ASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGS 534
+G T+++I H L I+ AD I G G+V+ SG+
Sbjct: 218 LVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 49/179 (27%)
Query: 999 LTLKIEAGKTVALVGQSGSGKS----TIIGLIERFYDPQSGSVMVDER---NIKSYNLRK 1051
L + AG+T+ +VG+SGSGKS ++GL+ GS + R N+ L K
Sbjct: 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA-NGRIGGSATFNGREILNLPEKELNK 93
Query: 1052 LRS-CIALVSQEPTL-----------FAGTIRQNIVYGKEVATEAEIR--KAAVLANA-- 1095
LR+ I+++ Q+P + + K A E +R A + A
Sbjct: 94 LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARK 153
Query: 1096 ------HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
HEF SGG +QR+ +A A+L P +L+ DE T+ALD
Sbjct: 154 RMKMYPHEF-------------------SGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 7e-07
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERI-VQEALDQASQGRTMIIIAHR 511
+LSGG+ QR+AIA AL+RD DE TS LD +R+ V + + ++G+ ++++ H
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVVEHD 270
Query: 512 LSTIRK-ADLIGVL 524
L+ + AD + +
Sbjct: 271 LAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI----KKLQLKWLRSQMGLVN 397
++ IG++G +G GK+T I +L P +G+I ++ + + ++ + + L++
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
F T I KP +++ + +V +LSGG
Sbjct: 84 SITKDFYTHPYFKTEIAKP--------------------LQIEQILDREV----PELSGG 119
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
+ QR+AIA L +D I LLDE ++ LD E + + +
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 350 GSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL------QLKWLRSQMG----LVNQE 399
G +G+GK++++ +L P G +L G I++ L +L Q G L E
Sbjct: 34 GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE 93
Query: 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQ 458
+ F + E + +A + G+E V Q LS GQ
Sbjct: 94 NLRFYQRLHGP-------GDDEALWEALAQVGLA--------GFEDVPVRQ----LSAGQ 134
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRL----- 512
++R+A+AR + + +LDE +A+D + ++ L Q A QG +I+ H+
Sbjct: 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194
Query: 513 STIRKADL 520
+RK L
Sbjct: 195 DKVRKLRL 202
|
Length = 204 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 9e-07
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDG-----HKIKKLQL------KWLRSQMGL 395
GLVG SGSGKS + + K N + I L+L K + + +
Sbjct: 37 GLVGESGSGKSLIAKAI---CGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSM 93
Query: 396 VNQEPILF---STSIKENILIGKPGASME-------TVVKAAQAANVHDFIMKLNDGYET 445
+ QEP S + ++ P + + K +H +K ++
Sbjct: 94 IFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK---DHKD 150
Query: 446 KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GR 503
+ + +L+ G+ Q++ IA AL P++L+ DE T++++ ++ + L + +Q
Sbjct: 151 IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT 210
Query: 504 TMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541
T+++I+H L I + AD I VL G+ +ES + L+ M
Sbjct: 211 TILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
|
Length = 330 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 54/229 (23%)
Query: 1003 IEAGKTVALVGQSGSGKST----IIGLIERFYDPQSGSVMVDERNIKSYN-------LRK 1051
I+ G+ ++G+ GSG ST I + F+ G + +Y+ +
Sbjct: 84 IKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI--------TYDGITPEEIKKH 135
Query: 1052 LRSCIA-----------LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFIS 1100
R + L E FA + V+ E + A + A +S
Sbjct: 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS 195
Query: 1101 STEDGYDTYCGE---RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
T +T G RGV SGG+++R+++A A L I D AT LDSA+
Sbjct: 196 HT---RNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT------ 244
Query: 1158 ALEKMMVGRTCVVVAHRLSTI------QKA----DNIVVIKNGKVVEQG 1196
ALE + +T + + Q A D ++V+ G + G
Sbjct: 245 ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS-----QMGLV---- 396
+GL G G+G+S ++ LL G + LDG I +RS + G++
Sbjct: 282 VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID------IRSPRDAIRAGIMLCPE 335
Query: 397 --NQEPILFSTSIKENILIGKPGASMET---VVKAAQAANVHDFIMKLN---DGYETKVG 448
E I+ S+ +NI I + + +A N FI LN E +
Sbjct: 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM 395
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD--AESERIVQEALDQASQGRTMI 506
LSGG +Q+ + R L D K++LLDE T +D A+ E I + A+QG ++
Sbjct: 396 N----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE-IYNVIYELAAQGVAVL 450
Query: 507 IIAHRL-STIRKADLIGVLQSGRV 529
++ L + AD I V++ GR+
Sbjct: 451 FVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGG+KQRIA+AR P+ +LDE TSA+ + E + + G T+ ++HR S
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKS 640
Query: 514 TIR 516
+
Sbjct: 641 LWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRD---PKILLLDEATSALDAESERIVQEALDQ 498
GY ++GQ LSGG+ QRI +A+ L + + +LDE T+ L + + + E L +
Sbjct: 819 GY-IRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR 877
Query: 499 -ASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGS 534
+G T+++I H L I+ AD I G G V+ SG+
Sbjct: 878 LVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 51/217 (23%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK-----S 1046
D++I + L + G + L+G++G+GKST+I L+ P SG + + + IK
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIKLGYFAQ 382
Query: 1047 YNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGY 1106
+ L LR A E+ ++ A LA E
Sbjct: 383 HQLEFLR---------------------------ADESPLQHLARLAP-----QELEQKL 410
Query: 1107 DTYCGERGVQ----------LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
Y G G Q SGG+K R+ LA V + P +LLLDE T+ LD +
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192
EAL + VVV+H ++ D++ ++ +GKV
Sbjct: 471 EAL--IDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 28/156 (17%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNI-LLDGHKI---KKLQLKWLRSQMGLVNQEPI 401
IGL+G +G+GKST+I LL PV G I L G K+ + QL++LR+ ++ P+
Sbjct: 341 IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRA-----DESPL 395
Query: 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQ 460
+ A E K + D++ G++ KV + + SGG+K
Sbjct: 396 QHLARL----------APQELEQK------LRDYLGGF--GFQGDKVTEETRRFSGGEKA 437
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
R+ +A + + P +LLLDE T+ LD + + + EAL
Sbjct: 438 RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473
|
Length = 638 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 26/229 (11%)
Query: 998 GLTLKIEAGKTVALVGQSGSGKS----TIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053
+++ + G+ LVG+SGSGKS I G+ + + + + D+ ++ + R+ R
Sbjct: 25 RVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84
Query: 1054 SCI----ALVSQEPTL-------FAGTIRQNI---VYGKEVATEAEIRKAAVLANAHEF- 1098
+ +++ QEP + QNI Y RK + H
Sbjct: 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVG 144
Query: 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEA 1158
I +D +Y E L+ G+ Q++ +A A+ P +L+ DE T++++ ++ +
Sbjct: 145 IKDHKDIMRSYPYE----LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRL 200
Query: 1159 LEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204
L ++ T ++++H L I + AD I V+ G+ VE L++M
Sbjct: 201 LSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
|
Length = 330 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 335 FSYPTRPDTPTIGLVGSSGSGKSTVISLLE--------RFYDPVKGNILLDGHKIKKLQ- 385
P + +GLVG +G GKST + +L +F DP + +LD + +LQ
Sbjct: 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77
Query: 386 --LKWLRSQMGL------VNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIM 437
K L + + V+ P + E + ++ +V +
Sbjct: 78 YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQ----------L 127
Query: 438 KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE----RIVQ 493
+L + + Q LSGG+ QR+AIA AL RD DE +S LD + R+++
Sbjct: 128 ELRHVLDRNIDQ----LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR 183
Query: 494 EALDQASQGRTMIIIAHRLS 513
E A ++++ H L+
Sbjct: 184 EL---AEDDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD--AESERIVQEALDQA 499
G+ T++G LSGG +Q++ I R L+ P+IL+LDE T +D A+ E I Q + A
Sbjct: 384 GHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-IYQLIAELA 438
Query: 500 SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRV 529
+ + +III+ + + D I V+ +G V
Sbjct: 439 KKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 70/228 (30%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +N+ + D+++ L+ K+ G V ++G +G+GKST+ +I P SG++
Sbjct: 323 IEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+ E +K +A V Q R + K V E
Sbjct: 380 KIGE-TVK----------LAYVDQS--------RDALDPNKTV---------------WE 405
Query: 1098 FISSTEDGYDT------------YCG----------ERGVQLSGGQKQRIALARAVLKNP 1135
IS G D Y G ++ QLSGG++ R+ LA+ +
Sbjct: 406 EIS---GGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGG 462
Query: 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH------RLST 1177
+LLLDE T+ LD + ++EAL + VV++H R++T
Sbjct: 463 NVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513
LSGG ++ A+ RAL+ +P +LLLDE T+ LD E+ ++ L + QG ++I I+H S
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL-KTFQG-SIIFISHDRS 214
Query: 514 TIRK 517
IR
Sbjct: 215 FIRN 218
|
Length = 635 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 25/170 (14%)
Query: 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDG 442
K+ L S + F I+ G G+ T++ A A
Sbjct: 1 KIVLGRFPSYFV---PNDVTFGEGSL-TIITGPNGSGKSTILDAIGLALGGAQ-SATRRR 55
Query: 443 YETKVGQFG-----------VQLSGGQKQRIAIA-----RALIRDPKILLLDEATSALDA 486
K G +QLSGG+K+ A+A +L P + +LDE LD
Sbjct: 56 SGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP-LYILDEIDRGLDP 114
Query: 487 ESERIVQEAL-DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535
+ + EA+ + +G +I+I H AD + + +VI
Sbjct: 115 RDGQALAEAILEHLVKGAQVIVITHLPELAELADKL--IHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 48/238 (20%), Positives = 109/238 (45%), Gaps = 37/238 (15%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKS----TIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051
+ ++ + AG+ + + G G+G++ + G SG +++D + ++ + R
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP----ASSGEILLDGKPVRIRSPRD 330
Query: 1052 -LRSCIALVS---QEPTLFAG-TIRQNIVYG--KEVATEAEIRKAAVLANAHEFISSTE- 1103
+++ IA V + L +I +NI + + I + A A +I
Sbjct: 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI 390
Query: 1104 --DGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
+ G LSGG +Q++ LAR + +P +L+LDE T +D ++ + + +
Sbjct: 391 KTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
Query: 1162 MMV-GRTCVVVAHRLST-----IQKADNIVVIKNGKVV-----EQGTQSSLLSMGNGG 1208
+ G+ +++ S+ + +D I+V++ G++V E+ T+ ++++ GG
Sbjct: 447 LAAEGKAILMI----SSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAAAFGG 500
|
Length = 500 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNI--KSYNLR 1050
I KGL L I G+ A++G +GSGKST+ +I Y G ++ +I R
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAH-----EFISSTED- 1104
I L Q P G + + +A ++ RK L E I+
Sbjct: 82 AHLG-IFLAFQYPIEIPGVSNADFL---RLAYNSK-RKFQGLPELDPLEFLEIINEKLKL 136
Query: 1105 -GYDTYCGERGVQ--LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK 1161
G D R V SGG+K+R + + L + + +LDE S LD + ++ E + K
Sbjct: 137 VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196
Query: 1162 MMVGRTCVV-VAH--RLSTIQKADNIVVIKNGKVVEQGTQS 1199
+M ++ + H RL K D + V++NGK+++ G
Sbjct: 197 LMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237
|
Length = 252 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 53/246 (21%)
Query: 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS-RPDQMIFKGLTLKIEAGK-----T 1008
R EI+ E+ +D T YP + FK L++E G+
Sbjct: 322 RPEEIEFEEKPPRDDKARDTL---------VEYPDLKKTYGDFK---LEVEEGEIYDGEV 369
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK-SYNLRKLRSCIALVSQEPTLFA 1067
+ ++G +G GK+T + L+ P GS E ++K SY + + +
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYIS----------PDYD 415
Query: 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAH--EFIS--STEDGYDTYCGERGVQLSGGQKQ 1123
GT+ + ++A ++ E + + ED + E LSGG+ Q
Sbjct: 416 GTVEDLL---------RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGGELQ 462
Query: 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR--TCVVVAHRLSTIQK- 1180
R+A+A A+ + + LLDE ++ LD +V + + + + T +VV H + I
Sbjct: 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522
Query: 1181 ADNIVV 1186
+D ++V
Sbjct: 523 SDRLIV 528
|
Length = 591 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK--MMVGRTCVVVA 1172
+ LSGG+ QR+A+A A+L+N L DE ++ LD A+ + +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
H L+ + + + + G+ G S G
Sbjct: 130 HDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREG 164
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK-KLQLKWLRSQMGLVNQE-PILFST 405
L+G +G+GKST++ L Y G+IL G +I K + L + + +V+QE ++
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88
Query: 406 SIKENILIGK-PGASMETVVKAAQAANVHDFIMK---LNDGYETKVGQFGVQLSGGQKQR 461
S+ +N+ +G+ P M V + I ++ KV LS Q Q
Sbjct: 89 SVMDNMWLGRYPTKGM--FVDQDKMYRDTKAIFDELDIDIDPRAKVAT----LSVSQMQM 142
Query: 462 IAIARALIRDPKILLLDEATSALDAESE-----RIVQEALDQASQGRTMIIIAHRLSTIR 516
I IA+A + KI+++DE TS+L E E I+++ + +G ++ I+H++ I
Sbjct: 143 IEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIF 198
Query: 517 K-ADLIGVLQSGRVI 530
+ D I +L+ G+ I
Sbjct: 199 QLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 42/218 (19%), Positives = 100/218 (45%), Gaps = 37/218 (16%)
Query: 346 IGLVGSSGSGKSTVISLLERFYD-PVKGNILLDGHKIK-KLQLKWLRSQMGLV----NQE 399
+G+ G G+G++ ++ L Y +GN+ ++G + + + +R+ + +V +
Sbjct: 289 LGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH 348
Query: 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ------ 453
I+ + +NI + F M+++ E ++ +Q
Sbjct: 349 GIVPILGVGKNITLS--------------VLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 454 ---------LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGR 503
LSGG +Q+ +A+ L+ +P++L+LDE T +D ++ + + ++Q A +G
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 504 TMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
+I+++ L+ + +D + V+ G++ + L Q
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQ 492
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 8e-06
Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 80/224 (35%)
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT- 1064
GK ++G +G GK+T + ++ SG ++ NL EP+
Sbjct: 99 GKVTGILGPNGIGKTTAVKIL-------SGELIP--------NLGDYEE-------EPSW 136
Query: 1065 -----LFAGTIRQNIVYGKEVATEAEIRKA-----------AVLANAHEFISSTEDGYDT 1108
F GT QN Y K++ EI+ E + +
Sbjct: 137 DEVLKRFRGTELQN--YFKKLY-NGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD----- 188
Query: 1109 YCGERGV-------------------QLSGGQKQRIALARAVLKNPMILLLDEATSALD- 1148
ERG +LSGG+ QR+A+A A+L++ DE TS LD
Sbjct: 189 ---ERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245
Query: 1149 ----SASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVI 1187
+ + L++E E G+ +VV H L+ + ADN+ +
Sbjct: 246 RQRLNVA-RLIRELAE----GKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-06
Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 39/224 (17%)
Query: 340 RPDTPTIGLVGSSGSGKSTVISLL--ERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397
RP T L+G SG+GK+T++ +L + ++G+I + G K Q + R G
Sbjct: 904 RPGVLT-ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--FPKKQETFARIS-GYCE 959
Query: 398 Q-----------EPILFSTSIKENILIGKPGASM--ETVVKAAQAANVHDFIMKLNDGYE 444
Q E +++S ++ + K M + V++ + N+ D I
Sbjct: 960 QNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI-------- 1011
Query: 445 TKVGQFGVQ-LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQG 502
VG GV LS Q++R+ IA L+ +P I+ +DE TS LDA + IV + + G
Sbjct: 1012 --VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069
Query: 503 RTMIIIAHRLST-IRKA--DLIGVLQSGRVIESG-----SHDVL 538
RT++ H+ S I +A +L+ + + G+VI SG SH ++
Sbjct: 1070 RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKII 1113
|
Length = 1470 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 52/198 (26%), Positives = 76/198 (38%), Gaps = 70/198 (35%)
Query: 328 IEFKDVDFSYPTRP------------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI- 374
I F D F YP P D+ I +VG +G GKST++ L+ P G +
Sbjct: 509 ISFSDASFGYPGGPLLFKNLNFGIDLDS-RIAMVGPNGIGKSTILKLISGELQPSSGTVF 567
Query: 375 --------LLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKA 426
+ H + L L + P+L+ ++ PG
Sbjct: 568 RSAKVRMAVFSQHHVDGLDL----------SSNPLLY-------MMRCFPGV-------P 603
Query: 427 AQAANVHDFIMKLNDGYETKVGQFGVQ----------LSGGQKQRIAIARALIRDPKILL 476
Q H +G FGV LSGGQK R+A A+ + P ILL
Sbjct: 604 EQKLRAH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650
Query: 477 LDEATSALDAES-ERIVQ 493
LDE ++ LD ++ E ++Q
Sbjct: 651 LDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 46/202 (22%)
Query: 348 LVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
++G GSG ST ++ V+G+I +G K+ K+ ++ V++E + F
Sbjct: 38 VLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY-PGEIIYVSEEDVHFP 96
Query: 405 T-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
T +++E + DF ++ +F +SGG+++R++
Sbjct: 97 TLTVRETL----------------------DFALRCKG------NEFVRGISGGERKRVS 128
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523
IA AL+ +L D +T LD+ + AL+ RTM A L + + +
Sbjct: 129 IAEALVSRASVLCWDNSTRGLDSST------ALEILKCIRTM---ADVL---KTTTFVSL 176
Query: 524 LQSGRVIESGSHDVLMQMNNGE 545
Q+ I VL+ + G
Sbjct: 177 YQASDEIYDLFDKVLV-LYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-05
Identities = 19/35 (54%), Positives = 28/35 (80%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
LSGG+++R+AL R +L+ P +LLLDE T+ LD+ S
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 27/157 (17%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS-QMGLVN------- 397
+G+ G G+G++ ++ +L G + LDGH++ RS Q GL N
Sbjct: 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV------TRSPQDGLANGIVYISE 334
Query: 398 ---QEPILFSTSIKENILI------GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
++ ++ S+KEN+ + + G S++ A + V DFI N +
Sbjct: 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLK---HADEQQAVSDFIRLFNIKTPSMEQ 391
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485
G+ LSGG +Q++AIAR L+ PK+L+LDE T +D
Sbjct: 392 AIGL-LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 45/207 (21%)
Query: 1006 GKTVALVGQSGSGKSTIIGLIE--------RFYDPQSGSVMVDE----------RNIKSY 1047
GK V ++G +G GKST + ++ R+ DP S ++ + +
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 1048 NLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYD 1107
LR + V P + G + + + E E+ + L N +
Sbjct: 160 ELRAVHK-PQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD---------- 208
Query: 1108 TYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALD-----SASENLVQEALEK 1161
R V +LSGG+ QR+A+A A+L++ + DE +S LD +A+ +++E E
Sbjct: 209 -----RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA-RVIRELAED 262
Query: 1162 MMVGRTCVVVAHRLSTIQK-ADNIVVI 1187
G+ +VV H L+ + +D + ++
Sbjct: 263 ---GKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIA 509
+ LSGG+ QR+AIA AL+R+ L DE ++ LD E A+ + S+ +T +++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 510 HRLSTI 515
H L+ +
Sbjct: 130 HDLAVL 135
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 350 GSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPILFSTS 406
G++G GKS+++ ++ P GNI I + ++ +GL +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLK------LEMT 86
Query: 407 IKENILI-GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
+ EN+ + S ET+ A +H F KL+D + K LS G ++ +AIA
Sbjct: 87 VFENLKFWSEIYNSAETLYAA-----IHYF--KLHDLLDEKC----YSLSSGMQKIVAIA 135
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALD-QASQGRTMIIIAHRLSTIRKADLI 521
R + + LLDE + L E+ ++ + +A+ G +++ +H S+I+ A ++
Sbjct: 136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--ERFYDPQSGSVMVDERNIKS 1046
S D+ I +GL L++ G+ A++G +GSGKST+ + Y+ G+V K
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE-----FKG 64
Query: 1047 YNLRKLR------SCIALVSQEPTLFAGTIRQNIVYGKEVATEA--EIRKAAVLANAHEF 1098
+L +L I + Q P G Q + + A A R L + +F
Sbjct: 65 KDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFL---QTALNAVRSYRGQEPL-DRFDF 120
Query: 1099 ISSTEDGY-------DTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
E+ D V SGG+K+R + + + P + +LDE+ S LD +
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 1152 ENLVQEALEKMMVG-RTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
+V + + + G R+ ++V H R+ K D + V+ G++V+ G
Sbjct: 181 LKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
|
Length = 248 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 1117 LSGGQKQRIALARAVLK---NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172
LSGG+ QRI LA+ + K + +LDE T+ L + E L++++ G T VV+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 1173 HRLSTIQKADNIVVI------KNGKVVEQGT 1197
H L I+ AD I+ + G+VV GT
Sbjct: 230 HNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 37/222 (16%)
Query: 998 GLTLKIEAG-----KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
TL++E G + + ++G +G GK+T I ++ P G + ++ + SY + +
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQYI 70
Query: 1053 RSCIALVSQEPTLFAGTIRQ---NIVYGKEVAT--EAEIRKAAVLANAHEFISSTEDGYD 1107
++ + GT+R +I + EI K + E D
Sbjct: 71 KA----------DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI----------EQILD 110
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK--MMVG 1165
E LSGG+ QR+A+A + K+ I LLDE ++ LD + + + +
Sbjct: 111 REVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166
Query: 1166 RTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
+T VV H + I + +++ G+ G + S+ +G
Sbjct: 167 KTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSG 208
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-05
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 1117 LSGGQKQRIALARAVLK---NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172
LSGG+ QRI LA+ + K + +LDE T+ L + E L++++ G T VV+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 1173 HRLSTIQKADNIVVI------KNGKVVEQGT 1197
H L I+ AD I+ + G VV GT
Sbjct: 890 HNLDVIKTADYIIDLGPEGGDGGGTVVASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
IGLVG +GSGKST+ +++ P G + +G ++ + GL Q + +
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAISAGLSGQLTGIENI 106
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
K + K K + + + +FI + Y S G + ++ +
Sbjct: 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKY-----------SSGMRAKLGFS 155
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQ----ASQGRTMIIIAHRLSTIRK-ADL 520
+ +P IL++DEA S D + Q+ LD+ Q +T+ ++H L +R+
Sbjct: 156 INITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTK 212
Query: 521 IGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEV 564
I ++ G++ + G D ++ + K + +Q RN++
Sbjct: 213 IAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRNKL 256
|
Length = 264 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 44/192 (22%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+GLVG +G GKST+++LL K I DG W Q+ VNQE
Sbjct: 30 VGLVGKNGCGKSTLLALL-------KNEISADGGSYT-FPGNW---QLAWVNQETPALPQ 78
Query: 406 SIKENILIG-KPGASMETVVKAAQAANVHDFIMKL------------------------- 439
E ++ G + +E + A N I +
Sbjct: 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138
Query: 440 -NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ 498
N+ E V F SGG + R+ +A+ALI +LLLDE T+ LD ++ I E +
Sbjct: 139 SNEQLERPVSDF----SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAV-IWLEKWLK 193
Query: 499 ASQGRTMIIIAH 510
+ QG T+I+I+H
Sbjct: 194 SYQG-TLILISH 204
|
Length = 638 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 30/214 (14%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ + +T G AL+G SG+GK+T L++ ++G + E +I+ K +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTT---LMDVLAGRKTGGYI--EGDIRISGFPKKQE 949
Query: 1055 CIALVS--------QEPTLFAGTIRQNIVYG------KEVATEAEIRKAAVLANAHEFIS 1100
A +S P + T+R++++Y KEV+ E ++ + E
Sbjct: 950 TFARISGYCEQNDIHSPQV---TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVEL-- 1004
Query: 1101 STEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
++ D G GV LS Q++R+ +A ++ NP I+ +DE TS LD+ + +V +
Sbjct: 1005 --DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1062
Query: 1160 EKMM-VGRTCVVVAHRLS--TIQKADNIVVIKNG 1190
+ GRT V H+ S + D ++++K G
Sbjct: 1063 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 449 QFGV---------QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ- 498
QFG+ LS G+ ++ + +AL+ +P +L+LDE LD S + + E L
Sbjct: 122 QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181
Query: 499 ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
G T++++ +R I GVL + E+G + ++Q
Sbjct: 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 26/215 (12%)
Query: 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA--- 1057
L + AG + A VG +GSGKS + + SG +I + +L+ ++
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 1058 ------LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN-AHEFISSTEDGYDTYC 1110
++S T + I + E++ A A +F G
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEII--------QDEVKDPARCEQLAQQF------GITALL 129
Query: 1111 GERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCV 1169
R LS G+ ++ L +A++ P +L+LDE LD AS + E L + G T V
Sbjct: 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Query: 1170 VVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+V +R I V+ + + E G + +L
Sbjct: 190 LVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 18/201 (8%)
Query: 346 IGLVGSSGSGKSTVISLLERF-YDPVK-GNILLDGHKIK-KLQLKWLRSQMGLVNQ---E 399
+G G GSG++ +++ L F D G I L+G I + L ++ M + + +
Sbjct: 292 LGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRD 349
Query: 400 PILFST-SIKENILI------GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452
F SI +N+ I G +M + + + L + V Q
Sbjct: 350 NGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS-VNQNIT 408
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHR 511
+LSGG +Q++ I++ L P++++ DE T +D ++ + + + Q A G+ +++++
Sbjct: 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468
Query: 512 LSTIRKA-DLIGVLQSGRVIE 531
L I D I V GR+ +
Sbjct: 469 LPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 36/177 (20%)
Query: 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389
D+ F P +G++G +G+GKST+ ++ P G I + G +K
Sbjct: 338 IDDLSFKLPP---GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVK------- 386
Query: 390 RSQMGLVNQ--EPILFSTSIKENI-------LIGKPGASMETVVKAAQAANVHDFIMKLN 440
+ V+Q + + + ++ E I +GK + A V F K +
Sbjct: 387 ---LAYVDQSRDALDPNKTVWEEISGGLDIIQLGK--------REVPSRAYVGRFNFKGS 435
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497
D + KVGQ LSGG++ R+ +A+ L +LLLDE T+ LD E+ R ++EAL
Sbjct: 436 D-QQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-05
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 30/212 (14%)
Query: 348 LVGSSGSGKST----VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF 403
++G GSG ST + S + F+ V+G I DG ++++ K R + + + F
Sbjct: 92 VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHF 150
Query: 404 -STSIKEN----ILIGKPGASMETVVKAAQAANVHDFIMK---LNDGYETKVGQFGVQ-L 454
++ E P + V + A ++ D M L+ TKVG V+ +
Sbjct: 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGV 210
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST 514
SGG+++R++IA A + KI D AT LD+ + AL+ +T I
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT------ALEFIRALKTSANILDTTPL 264
Query: 515 I------RKA----DLIGVLQSGRVIESGSHD 536
+ + A D + VL G I G D
Sbjct: 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 79 RIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFI 138
++R + + + LRQ + FD Q Q+++ +T+D I+D + L + I
Sbjct: 99 QLRTDVMDAALRQPLSAFDTQPVG----QLISRVTNDTEVIRDLYVTVVATVLRS-AALI 153
Query: 139 GSILVA-FLLSWRLALAALP-FSLLFIVPGI 167
G++LVA F L WR+AL A+ F + +V I
Sbjct: 154 GAMLVAMFSLDWRMALVAIMIFPAVLVVMVI 184
|
Length = 592 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 20/205 (9%)
Query: 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD--ERNIKSYNLRKLRSCIA 1057
LK+ AL+G++G+GKST++ + Y SGS++ E + KS L + I+
Sbjct: 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK-EALENGIS 76
Query: 1058 LVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISST-----EDGYDTYCG 1111
+V QE L ++ N+ G+ + + + T E D
Sbjct: 77 MVHQELNLVLQRSVMDNMWLGR-------YPTKGMFVDQDKMYRDTKAIFDELDIDIDPR 129
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC--V 1169
+ LS Q Q I +A+A N I+++DE TS+L N + + K+ R C V
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIV 188
Query: 1170 VVAHRLSTI-QKADNIVVIKNGKVV 1193
++H++ I Q D I ++++G+ +
Sbjct: 189 YISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 989 SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048
SR ++ +F L ++AG+ + + G +G+GK+T++ ++ +SG + +D + +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1049 LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYD 1107
+ +A + P L A + +N+ + R+A + + I D
Sbjct: 80 RSRF---MAYLGHLPGLKADLSTLENLHF----LCGLHGRRAKQMPGSALAIVGLAGYED 132
Query: 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEAL 1159
T QLS GQK+R+ALAR L + LLDE + LD LV +
Sbjct: 133 TLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 20/60 (33%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++N+ + + P +FK L L +EAG+ +A++G++G GK+T++ + +P SG+V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 15/185 (8%)
Query: 340 RPDTPTIGLVGSSGSGKSTVISLL-ERFYDPV--KGNILLDGHKIKKLQLKWLRSQMGLV 396
+P T T L+G+SG+GK+T++++L ER V G+ L++G L + RS +G V
Sbjct: 787 KPGTLT-ALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP---LDSSFQRS-IGYV 841
Query: 397 NQEPILFSTS-IKENILIGKPGASMETVVKAAQAANVHDFIMKL---NDGYETKVGQFGV 452
Q+ + TS ++E++ ++V K+ + V + ++KL + VG G
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYV-EEVIKLLEMESYADAVVGVPGE 900
Query: 453 QLSGGQKQRIAIARALIRDPKILL-LDEATSALDAESERIVQEALDQ-ASQGRTMIIIAH 510
L+ Q++R+ I L+ PK+LL LDE TS LD+++ + + + + A G+ ++ H
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
Query: 511 RLSTI 515
+ S I
Sbjct: 961 QPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 45/207 (21%)
Query: 1006 GKTVALVGQSGSGKSTIIGLIE--------RFYDPQSGSVMVDE---RNIKSYNLRKLR- 1053
G+ + LVG +G GKST + ++ +F DP ++DE +++Y KL
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY-FTKLLE 84
Query: 1054 ---SCI---ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYD 1107
I V P G + + + E E+ L + +
Sbjct: 85 GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD---------- 134
Query: 1108 TYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALD-----SASENLVQEALEK 1161
R + QLSGG+ QR+A+A A+ ++ DE +S LD +A+ L++E E
Sbjct: 135 -----RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIRELAED 188
Query: 1162 MMVGRTCVVVAHRLSTIQK-ADNIVVI 1187
+VV H L+ + +D I +
Sbjct: 189 ---DNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSALDAESERIVQEALDQ 498
GY K+GQ LSGG+ QR+ +A+ L + + +LDE T+ L + + + E L +
Sbjct: 812 GY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHR 870
Query: 499 -ASQGRTMIIIAHRLSTIRKADLI------GVLQSGRVIESGS 534
+G T+I+I H L I+ AD I G G ++ SG+
Sbjct: 871 LVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGT 913
|
Length = 935 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALD-SASENLVQEALEKMMVGRTCVVVAHRL 1175
LSGG ++ AL RA++ NP +LLLDE T+ LD E L E K G + + ++H
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL--EGFLKTFQG-SIIFISHDR 213
Query: 1176 STIQK-ADNIVVIKNGKVV 1193
S I+ A IV + GK+V
Sbjct: 214 SFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 57/291 (19%), Positives = 118/291 (40%), Gaps = 50/291 (17%)
Query: 929 IADAGSMTSDIAKGSSAIRTIFTILDRK-SEIDPEDPKASEDIEEPTKGFIELKNVFFSY 987
I D + + S I ++ R+ + + P +P D+ +E +N+
Sbjct: 214 IRDGQHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDV------ILEARNLTCWD 267
Query: 988 PSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKS 1046
P + ++ + G+ + + G G+G++ ++ + Y + G+V ++ + +
Sbjct: 268 VINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI 327
Query: 1047 YN-LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDG 1105
N + +R+ IA+V ++ R IV + I + + + F +
Sbjct: 328 RNPAQAIRAGIAMVPEDRK------RHGIV--PILGVGKNITLSVL--KSFCFKMRIDAA 377
Query: 1106 YDTYCGERGVQ---------------LSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
+ +Q LSGG +Q+ LA+ +L NP +L+LDE T +D
Sbjct: 378 AELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
Query: 1151 SE--------NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192
++ L QE G +VV+ L+ + +D ++VI GK+
Sbjct: 438 AKYEIYKLINQLAQE-------GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 9e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 1117 LSGGQKQRIALARAVLK---NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172
LSGG+ QR+ LA+ + K + +LDE T+ L + E L +++ G T +V+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1173 HRLSTIQKADNIVVI------KNGKVVEQGT 1197
H L I+ AD I+ + G++V GT
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGT 913
|
Length = 935 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 1117 LSGGQKQRIALARAVLKNPM--ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + + +LDE + L + + E L+++ +G T +VV H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 1174 RLSTIQKADNIVVI------KNGKVVEQG 1196
TI+ AD+++ I G++V QG
Sbjct: 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLL 1140
A AE R A++LA +S T + + SGG + RIALARA+ P +LLL
Sbjct: 317 AYTAEARAASILAG----LSFTPEMQV----KATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 1141 DEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
DE T+ LD + ++ L K +T +VV+H
Sbjct: 369 DEPTNHLDLHAVLWLETYLLKW--PKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 22/57 (38%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
LSGG++ R+ +AR ++ +L+LDE T+ LD E+ +++E LD + QG T+++++H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLD-SYQG-TVLLVSH 495
|
Length = 635 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 46/291 (15%)
Query: 927 KNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPT---KGFIELKNV 983
K + S +DI G T ++ E +++ + + +N+
Sbjct: 715 KAGETSASNKNDIEAGEVLGST---------DLTDESDDVNDEKDMEKESGEDIFHWRNL 765
Query: 984 FFSYP-SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIG-LIERFYDPQSGSVMVDE 1041
+ + ++I + ++ G AL+G SG+GK+T++ L ER +G + +
Sbjct: 766 TYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTGVITGGD 822
Query: 1042 RNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISS 1101
R + N R L S G ++Q ++ +R +A L S
Sbjct: 823 RLV---NGRPLDSSFQRSI-------GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKS 872
Query: 1102 TEDGY--------------DTYCGERGVQLSGGQKQRIALARAVLKNPMILL-LDEATSA 1146
+ Y D G G L+ Q++R+ + ++ P +LL LDE TS
Sbjct: 873 EKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSG 932
Query: 1147 LDSASENLVQEALEKMM-VGRTCVVVAHRLSTI--QKADNIVVI-KNGKVV 1193
LDS + + + + K+ G+ + H+ S I ++ D ++++ K G+ V
Sbjct: 933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 1013 GQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072
G +G GKS+++ +I P SG++ +N N+ K C + T+ +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYY--KNCNINNIAKP-YCTYIGHNLGLKLEMTVFE 89
Query: 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132
N+ + E+ AE AA+ H F D D C LS G ++ +A+AR +
Sbjct: 90 NLKFWSEIYNSAETLYAAI----HYF--KLHDLLDEKC----YSLSSGMQKIVAIARLIA 139
Query: 1133 KNPMILLLDEATSALDSASENLV 1155
+ LLDE + L + +L+
Sbjct: 140 CQSDLWLLDEVETNLSKENRDLL 162
|
Length = 195 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 346 IGLVGSSGSGKS-TVISLLERFYDPVKGNILLDGHKIK-KLQLKWLRSQMGLVNQE---- 399
+G+ G G+G++ V L + +G I +DG +K + + + + +V ++
Sbjct: 291 LGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD 350
Query: 400 ---PILFSTSIKENILIG--KPGASMETVVKAAQAANVHDFIMKLN---DGYETKVGQFG 451
P++ + +NI + + AA+ + + I +L E +
Sbjct: 351 GIVPVM---GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA--- 404
Query: 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALD--AESERIVQEALDQASQGRTMIIIA 509
+LSGG +Q+ +A+ L+ +PKIL+LDE T +D A+ E I + QG +I+I+
Sbjct: 405 -RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE-IYKLINQLVQQGVAIIVIS 462
Query: 510 HRLSTIRK-ADLIGVLQSGRV 529
L + +D + V+ G++
Sbjct: 463 SELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
SGG + RIA+ARAL +P +LLLDE T+ LD + ++ L + +T I+++H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP--KTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 1117 LSGGQKQRIALARAVLKNP--MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QR+ LA + P + +LDE ++ L N + E ++ ++ +G T +++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1174 RLSTIQKADNIVVI------KNGKVVEQG 1196
L + AD I+ GKVV G
Sbjct: 148 NLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Query: 454 LSGGQKQRIA-IARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMII---- 507
LS GQ QR+A I RAL++ P +L+LDE LD + ++V+ +D S+G T ++
Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
Query: 508 --------IAHRLSTI 515
I HRL +
Sbjct: 461 HAEDAPACITHRLEFV 476
|
Length = 490 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY---DPQSGSVMVDERNIKSYNLRKL 1052
F+ ++L++ AG+ + L G G+G++ L E Y + G +M++ + I +
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTE---LAETLYGLRPARGGRIMLNGKEINA---LST 332
Query: 1053 RSCIA--LV-----SQEPTLFA-GTIRQNI---VYGKEVATEAEIRKAAVLANAHEFISS 1101
+A LV Q L+ + N+ + + R+ AVL +
Sbjct: 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL-- 390
Query: 1102 TEDGYDTYCGERGVQ-LSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
E+ + LSGG +Q++ +A+ + +P +L++DE T +D ++ N
Sbjct: 391 ---NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440
|
Length = 510 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 48/221 (21%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
K F +LK++FF ++ ++ G+ V ++G +GSGKST+ LI P
Sbjct: 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK 78
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVS------------QEPTLFAGTIRQNIVYGKEVAT 1082
G+V +++ + IA+ S + L G ++ I KE+
Sbjct: 79 GTV----------DIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKI---KEI-- 123
Query: 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
I + A+ +FI Y S G K R+ A +V NP IL++DE
Sbjct: 124 ---IPEIIEFADIGKFIYQPVKTY-----------SSGMKSRLGFAISVHINPDILVIDE 169
Query: 1143 ATSALDSASENLVQEALEKM----MVGRTCVVVAHRLSTIQ 1179
A S D + ++ L+KM G+T ++H LS ++
Sbjct: 170 ALSVGD---QTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207
|
Length = 549 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 48/192 (25%)
Query: 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK---------------IKKLQ 385
P+ +G++G +GSGKST+ +L+ P KG + + G I+ ++
Sbjct: 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIE 107
Query: 386 LKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET 445
LK L MGL KE I E + + + A++ FI + Y
Sbjct: 108 LKGL--MMGLT-----------KEKI--------KEIIPEIIEFADIGKFIYQPVKTY-- 144
Query: 446 KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRT 504
S G K R+ A ++ +P IL++DEA S D + + +++ QG+T
Sbjct: 145 ---------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKT 195
Query: 505 MIIIAHRLSTIR 516
+ I+H LS ++
Sbjct: 196 IFFISHSLSQVK 207
|
Length = 549 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 38/181 (20%)
Query: 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD--ERNIKSYNLRKLR 1053
F+ +++K G L+G +G GKST + ++ +P +G+V +D ER L KLR
Sbjct: 17 FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNER------LGKLR 70
Query: 1054 ---------SCIALVSQEPT-LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTE 1103
+ + V T L+ ++ +Y +E + K A L E +
Sbjct: 71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADL----EVKFAEM 126
Query: 1104 DGY--DTYCGE--RGV------------QLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147
DGY + GE GV +++ G K R+ LA+A+ NP ILLLDE T+ L
Sbjct: 127 DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNL 186
Query: 1148 D 1148
D
Sbjct: 187 D 187
|
Length = 530 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 0.001
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ-EPILFST 405
GL+G +G+GK+T +L G+ + G I + + MG Q + I
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLL 2027
Query: 406 SIKENI-----LIGKPGASMETVVK-AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
+ +E++ L G P +E V + Q+ + + +L Y SGG K
Sbjct: 2028 TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY-----------SGGNK 2076
Query: 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIAHRL 512
++++ A ALI P ++LLDE T+ +D ++ R++ + +GR +++ +H +
Sbjct: 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.001
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 446 KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497
KVG LSGG++ R+ +A+ L + +LLLDE T+ LD E+ R ++EAL
Sbjct: 442 KVGV----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALL 489
|
Length = 556 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 43/226 (19%)
Query: 996 FKGLTLKIEAGK-----TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050
+L++E G+ + +VG +G GK+T L+ P G V + +
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK-------- 401
Query: 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANA----HEFIS--STED 1104
+S +P Q I + E +R + E I E
Sbjct: 402 --------ISYKP--------QYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER 445
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164
D + LSGG+ QR+A+A + ++ + LLDE ++ LD V +A+ ++
Sbjct: 446 LLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501
Query: 1165 GR--TCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
R T +VV H + I +D ++V + G+ + G S + M G
Sbjct: 502 EREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHASGPMDMREG 546
|
Length = 590 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 960 DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGK 1019
+P++P A + + I L N SY RP I L+ ++ G+ +VG +G+GK
Sbjct: 244 EPDEPSARHALP-ANEPRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGK 299
Query: 1020 STIIGLI 1026
ST++ LI
Sbjct: 300 STLLSLI 306
|
Length = 490 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 453 QLSGGQKQ------RIAIARALIRDPKI--LLLDEATSALDAESERIVQEALDQ-ASQGR 503
LSGG++ R+A++ L ++ L LDE LD E + E L++ S GR
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 504 TMIIIAH 510
+III+H
Sbjct: 875 QIIIISH 881
|
Length = 908 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 447 VGQFGVQLSGGQKQRIAIARALIRDPK---ILLLDEATSALDAESERIVQEALDQ-ASQG 502
+GQ LS +K I IA+ L PK + LLDE ++LD + + + L S G
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 503 RTMIIIAHRLSTIRKADLIGVL------QSGRVIESGS 534
++I I H + +++AD + + G+++ SG
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGP 1790
|
Length = 1809 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.002
Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 73/220 (33%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE +N+ S+ D+++ L+ + G V ++G +G+GKST+ +I P SG++
Sbjct: 325 IEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
+ E +K +A V Q R + K V E
Sbjct: 382 KIGE-TVK----------LAYVDQS--------RDALDPNKTV---------------WE 407
Query: 1098 FISSTEDGYDT------------YCGE---RGV-------QLSGGQKQRIALARAVLKNP 1135
IS G D Y G +G LSGG++ R+ LA+ + +
Sbjct: 408 EIS---GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG 464
Query: 1136 MILLLDEATSALD----SASENLVQEALEKMMVGRTCVVV 1171
+LLLDE T+ LD A E EAL + G C VV
Sbjct: 465 NVLLLDEPTNDLDVETLRALE----EALLE-FPG--CAVV 497
|
Length = 556 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAH 1173
+L+ G+ Q++ +A A+ P +L+ DE T+A++ ++ + L ++ T ++++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 1174 RLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204
L + + AD I V+ G+ VE L++
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
|
Length = 330 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 1117 LSGGQKQRIALARAVLKNPMILL--LDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173
LSGG+ QRI LA + +L LDE + L + E L+++ +G T +VV H
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541
Query: 1174 RLSTIQKADNIVVI------KNGKVVEQGTQSSLLS 1203
TI+ AD+I+ I G++V +GT LL+
Sbjct: 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577
|
Length = 935 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 0.002
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 1005 AGKTVALVGQSGSGKSTII 1023
GKT LVGQSG GKST++
Sbjct: 84 KGKTSVLVGQSGVGKSTLL 102
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 453 QLSGGQKQ------RIAIARALIRDPKILLLDEATSALDAES-----ERIVQEALDQASQ 501
+ SGG+K R+A+A + IL LDE T+ LD E+ I++E Q
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK-- 172
Query: 502 GRTMIIIAHRLSTIRKADLI 521
+I+I H + AD I
Sbjct: 173 NFQLIVITHDEELVDAADHI 192
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
+LSGG +Q+ LA+ +L NP IL+LDE T +D
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 350 GSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ-MGLVNQEPILFST-SI 407
G +G+GK+T++ +L G I +DG + RS+ M + P L + S
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD----RSRFMAYLGHLPGLKADLST 99
Query: 408 KENI--LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
EN+ L G G + + +A A I+ L +T V Q LS GQK+R+A+A
Sbjct: 100 LENLHFLCGLHGRRAKQMPGSALA------IVGLAGYEDTLVRQ----LSAGQKKRLALA 149
Query: 466 RALIRDPKILLLDEATSALDAE 487
R + + LLDE + LD E
Sbjct: 150 RLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 453 QLSGGQKQRIAIARALI-----RDPK-ILLLDEATSALDAESERIVQEALDQASQGRTMI 506
LSGG+K +A+A LI P LLDE +ALD ++ V L + S+ I
Sbjct: 1078 NLSGGEKTLVALA--LIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFI 1135
Query: 507 IIAHRLSTIRKAD-LIGV 523
+I+ R + KAD L+GV
Sbjct: 1136 VISLREEMLEKADRLVGV 1153
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 454 LSGGQKQRIAIAR--ALIR---DPKILLLDEATSALD-AESERIVQEALDQASQGRTMII 507
LSGG+K A+A A+ R P +LDE +ALD A ER L + S+ I+
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSP-FCVLDEVDAALDDANVERFA-RLLKEFSKETQFIV 171
Query: 508 IAHRLSTIRKAD-LIGV 523
I HR T+ AD L GV
Sbjct: 172 ITHRKGTMEAADRLYGV 188
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 43/218 (19%)
Query: 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058
++LK G + LVG +GSGKST+ +I P G V +RN + S IA+
Sbjct: 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV---DRNGEV-------SVIAI 92
Query: 1059 VSQEPTLFAGTIRQNIVYG--------KEV-ATEAEIRKAAVLANAHEFISSTEDGYDTY 1109
+ G +NI + KE+ A +I + + L EFI Y
Sbjct: 93 SAGLSGQLTGI--ENIEFKMLCMGFKRKEIKAMTPKIIEFSELG---EFIYQPVKKY--- 144
Query: 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM----VG 1165
S G + ++ + + NP IL++DEA S D + Q+ L+K+
Sbjct: 145 --------SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQN 193
Query: 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202
+T V+H L +++ I I+ GK+ + G +L
Sbjct: 194 KTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.004
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 25/113 (22%)
Query: 454 LSGGQKQRIAIARAL---------IRDPKILLLDEATSAL-DAESERIVQEALDQASQGR 503
LSGG+ QRI +A + + LDE + L ++ER+++ G
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYV-------LDEPSIGLHQRDNERLIETLKRLRDLGN 534
Query: 504 TMIIIAHRLSTIRKADLI-------GVLQSGRVIESGSHDVLMQMNNGEGGAY 549
T+I++ H TIR AD I G G ++ G+ + L+ G Y
Sbjct: 535 TVIVVEHDEDTIRAADHIIDIGPGAGEH-GGEIVAEGTPEELLANPESLTGQY 586
|
Length = 935 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1224 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-214 Score=1948.90 Aligned_cols=1185 Identities=47% Similarity=0.766 Sum_probs=1078.6
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-hH---HHHHHH--------HH---HHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD-IS---ISIEAV--------DK---VPEKGM 67 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~---~~~~~~--------~~---~~~~~~ 67 (1224)
.+.++|+|..++++.+++++++++++.++..|++.+++|+++|.+...+ .. ...... .. .|++..
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999875432 11 111000 00 178899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047171 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLL 147 (1224)
Q Consensus 68 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1224)
||.+.++|+..++|.++++.+++++++|||. + .+|++.+++++|++.|++.+++.+..+++.+.++++++++.|+.
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~---~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDT---N-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeec---c-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 5 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 047171 148 SWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIK 227 (1224)
Q Consensus 148 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 227 (1224)
.|+|+++++.+.|++++....+.+.+.+...+++++++++.++++|+++++|||.+|+.|+.+.+||.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047171 228 QGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306 (1224)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 306 (1224)
...+.++..+++ ++.+..+++.+|||+.++..+..++|++++++++++.....+++..|.+..+..|.+|+.+|+++++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 999999999988 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccccccccEEEEeEEEECCCCC-------------CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 047171 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRP-------------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373 (1224)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-------------~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 373 (1224)
..|+++.....+......+|+|+|+||+|+||.+| +|+++||||||||||||+++||.|||+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 99887654422334456789999999999999875 45699999999999999999999999999999
Q ss_pred EEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCC
Q 047171 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453 (1224)
Q Consensus 374 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 453 (1224)
|++||.|+++++.+|||++||+|.|||.||++||+|||+||+|+++.+++.+||+++++++||.+||+||||.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeec
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g 533 (1224)
|||||||||||||||++||+||||||||||||+++|+.+|++|+++++|||+|+|||||+++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 047171 534 SHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMT 613 (1224)
Q Consensus 534 ~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1224)
+|+||++. +|.|.++++.|+.....+..+.+.........+. . .+. ...+..+. .........
T Consensus 570 ~h~ELi~~----~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~----~-~s~--~~~~~~~~-----~~~~~~~~~- 632 (1228)
T KOG0055|consen 570 THDELIAL----GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSL----K-SSS--SSPSLSRG-----SNRSNLLSV- 632 (1228)
T ss_pred CHHHHHhc----cchHHHHHHHHhhhhhhhccccccchhhhhhhcc----c-ccc--ccccccCC-----ccccccccc-
Confidence 99999998 7999999999976553321000000000000000 0 000 00000000 000000000
Q ss_pred CcccccccccccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhH
Q 047171 614 GSFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSET 693 (1224)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1224)
...++...+.. .....+.++++++++.+++|+++++|++++++.|+.+|++++.++.++..+...+++......
T Consensus 633 -----~~~~e~~~~~~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~ 706 (1228)
T KOG0055|consen 633 -----KPEGEDPEEPV-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREV 706 (1228)
T ss_pred -----ccccccccccc-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 00000000100 112256789999999999999999999999999999999999999999999876665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHH
Q 047171 694 RLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADR 773 (1224)
Q Consensus 694 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~ 773 (1224)
..|+++|+++++...+..++++|+|..++++++.++|.++|+++++++++|||.++|+ |.|.+|+++|+..++..+++.
T Consensus 707 ~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~r 785 (1228)
T KOG0055|consen 707 RAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDR 785 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHH
Confidence 6699999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhcc
Q 047171 774 MSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSS 853 (1224)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 853 (1224)
+..+++++.+++.+++++|+++|+++++++++.|++++..+.+.+++.....+.++..++..+...|++++++||++|+.
T Consensus 786 l~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~ 865 (1228)
T KOG0055|consen 786 LSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCA 865 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 047171 854 QDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAG 933 (1224)
Q Consensus 854 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~ 933 (1224)
|+++.+.|.+.++...+...+++++.++.+++++++.+++.++++|||++++.+|.+++.+++.+++.+.+....+++..
T Consensus 866 e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~ 945 (1228)
T KOG0055|consen 866 EEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQAS 945 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEc
Q 047171 934 SMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVG 1013 (1224)
Q Consensus 934 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG 1013 (1224)
.+.|++.++..|+.++++++++++.+++..+.+. ..++.+|+|+|+||+|+||+||+.+||+|+||+|++||++||||
T Consensus 946 s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~--~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG 1023 (1228)
T KOG0055|consen 946 SYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGG--KLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVG 1023 (1228)
T ss_pred hhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC--ccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEEC
Confidence 9999999999999999999999987765432221 33456899999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHH
Q 047171 1014 QSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA 1093 (1224)
Q Consensus 1014 ~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a 1093 (1224)
||||||||++.||.|||+|.+|.|.|||+|++++++++||++||+|+|||.||++||||||.||.+.++++||.+||+.|
T Consensus 1024 ~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~A 1103 (1228)
T KOG0055|consen 1024 PSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLA 1103 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999996568999999999999
Q ss_pred hHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEcc
Q 047171 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173 (1224)
Q Consensus 1094 ~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaH 1173 (1224)
++|+||.+||+||||.|||+|.+||||||||||||||++|||+||||||||||||.++|+.||++|++...|||+|+|||
T Consensus 1104 NaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAH 1183 (1228)
T KOG0055|consen 1104 NAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAH 1183 (1228)
T ss_pred hhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1174 rl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
||+||++||.|+|+++|+|+|+|||+||+++ +|.|++|++.|..
T Consensus 1184 RLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~--~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1184 RLSTIQNADVIAVLKNGKVVEQGTHDELLAK--RGIYFRLVQLQSS 1227 (1228)
T ss_pred chhhhhcCCEEEEEECCEEEecccHHHHHhC--CCchHHHhhhccC
Confidence 9999999999999999999999999999996 9999999998864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-171 Score=1691.51 Aligned_cols=1199 Identities=31% Similarity=0.483 Sum_probs=995.9
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHH-HH----HH---HHHHHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIE-AV----DK---VPEKGMCWTRTAE 74 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~-~~----~~---~~~~~~~~~~~~~ 74 (1224)
+.++|+|..+.++.+++++++++++.+++.|++|+++++++|.+... ....+.. .+ .. .+++.+++.++++
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999888788889999999999999999999999999986422 1111110 00 01 1778889999999
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047171 75 RQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALA 154 (1224)
Q Consensus 75 ~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 154 (1224)
++..++|.++|+|++++|.+|||+ . ++|++++++++|++.+++.+...+..++..+++++++++++|+++|+|+++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~---~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv 202 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDN---N-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLC 202 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998 5 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 155 ALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL 234 (1224)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1224)
+++++|+++++..++.+++++..++.++..++.++.++|.++|+++||+|+.|+.+.++|++..+++.+...+.....++
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047171 235 LLGSM-GMTYGAWAFQSWVGSVLVTER--------GEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMI 305 (1224)
Q Consensus 235 ~~~~~-~~~~~~~~~~~~~g~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l 305 (1224)
..++. ++.++++++++|+|++++.+| .+++|.+++++++.+....++..+.+.+..++++.+|++|+++++
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii 362 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 777888899999999999885 578999999888877777777788888999999999999999999
Q ss_pred ccCCCCCCCcccccccccccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 306 DRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
+.+|+++... .+...+. .+.|+|+||+|+|+++ ++|+++|||||||||||||+++|+|+|+|++|
T Consensus 363 ~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 440 (1466)
T PTZ00265 363 NRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG 440 (1466)
T ss_pred cCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC
Confidence 9877654321 1122222 2479999999999853 24669999999999999999999999999999
Q ss_pred EEEE-CCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCC-----------------------------------
Q 047171 373 NILL-DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP----------------------------------- 416 (1224)
Q Consensus 373 ~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~----------------------------------- 416 (1224)
+|++ ||+++++++..++|++||||+|+|.||++||+|||.+|.+
T Consensus 441 ~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1466)
T PTZ00265 441 DIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAG 520 (1466)
T ss_pred eEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccc
Confidence 9999 5799999999999999999999999999999999999742
Q ss_pred ----------------------CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 417 ----------------------GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 417 ----------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
++++++++++|+.+++++|+.++|+||||.+|++|.+|||||||||+|||||+++|+|
T Consensus 521 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~I 600 (1466)
T PTZ00265 521 DLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKI 600 (1466)
T ss_pred hhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 2456889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCc-------------------------
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSG------------------------- 527 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G------------------------- 527 (1224)
||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 601 LlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 680 (1466)
T PTZ00265 601 LILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNK 680 (1466)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccc
Confidence 99999999999999999999999875 489999999999999999999999986
Q ss_pred ----------------------eEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCC
Q 047171 528 ----------------------RVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQT 585 (1224)
Q Consensus 528 ----------------------~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (1224)
+|+|+|+|+||++.. +|.|+.+++.|..................+..........
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~---~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1466)
T PTZ00265 681 NNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNK---NGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERG 757 (1466)
T ss_pred cccccccccccccccccccCCceeEeeCCHHHHHhcc---CCcHHHHHhhhccccccccccccccccccccccccccccc
Confidence 599999999999732 8999999988754321110000000000000000000000
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCccccccCcccccccccc-cC---ccC-CCCCCCchHHHHHHHHhhHHHHHHHHHHHH
Q 047171 586 P-HTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQ-ND---KNF-HDNSHSPSSLLRLLRMSAIEWKRTLLGCLG 659 (1224)
Q Consensus 586 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1224)
. ................ ... ...+... .....+.. .. ++. ......+..++++++..++.++.+++++++
T Consensus 758 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1466)
T PTZ00265 758 YDPDEMNGNSKHENESAS--NKK-SCKMSDE-NASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALS 833 (1466)
T ss_pred cccccccccccccccccc--ccc-ccccccc-cccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000000000 000 0000000 00000000 00 000 000111223455556556666668888889
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047171 660 SAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFT 739 (1224)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 739 (1224)
+++.+++.|+++++++.+++.++.. .........|++++++++++..++.+++.|+..++++++..++|.++|+++++
T Consensus 834 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~ 911 (1466)
T PTZ00265 834 ILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILY 911 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999876532 12223345678888888999999999999999999999999999999999999
Q ss_pred CCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 740 FEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVL 819 (1224)
Q Consensus 740 ~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 819 (1224)
+|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++..++....+.
T Consensus 912 ~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 991 (1466)
T PTZ00265 912 QEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARL 991 (1466)
T ss_pred CCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998789999999999999999999999999999999999999999999999999888766555444333222221
Q ss_pred HHH--HHHH-------------HHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 047171 820 MKS--MSEK-------------AKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLF 884 (1224)
Q Consensus 820 ~~~--~~~~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1224)
... ..+. .++..++....+.|++.|+++||+|+.|+++.++|.+..+...+...+.....++..+
T Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1466)
T PTZ00265 992 TANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWG 1071 (1466)
T ss_pred HHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0101 1233556788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 047171 885 SSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDP 964 (1224)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~ 964 (1224)
+.+++..++.++++|+|++++..|.++++++++++.++++...++..+...++++.++..+++|++++++.+++.+..+.
T Consensus 1072 ~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~ 1151 (1466)
T PTZ00265 1072 FSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDN 1151 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCC
Confidence 99999999999999999999999999999999988777776677888999999999999999999999987654322111
Q ss_pred CCCCC-CCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----------
Q 047171 965 KASED-IEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP----------- 1032 (1224)
Q Consensus 965 ~~~~~-~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p----------- 1032 (1224)
..... .++...|.|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||||+++|+|||+|
T Consensus 1152 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265 1152 GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred cccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence 11100 012235789999999999977667899999999999999999999999999999999999999
Q ss_pred -------------------------------------------CCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 1033 -------------------------------------------QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 1033 -------------------------------------------~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
++|+|++||+|++++++++||++|+||||||+||+||
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gT 1311 (1466)
T PTZ00265 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMS 1311 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccccc
Confidence 6999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 047171 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~ 1149 (1224)
|||||.+|+++++|+++++||+.|+++|||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||+
T Consensus 1312 IreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1312 IYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeC----CEEE-EecChhHHhhcCCCchhHHHHHHhh
Q 047171 1150 ASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKN----GKVV-EQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1150 ~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~----G~Iv-e~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+||+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |+|||+||+++ .+|.|++||+.|+
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~-~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV-QDGVYKKYVKLAK 1466 (1466)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhc-CCChHHHHHhhcC
Confidence 99999999999884 68999999999999999999999999 9954 99999999973 3899999998774
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-161 Score=1514.82 Aligned_cols=1122 Identities=22% Similarity=0.279 Sum_probs=876.0
Q ss_pred HHHHHHHHHHHHhhhcCCCh---HHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHH----HHHHHHcCChhhhhcc
Q 047171 33 TPLTMYILSMVINELGTSDI---SISIEAVDKV---PEKGM---CWTRTAERQASRIRME----YLKSVLRQEVGFFDNQ 99 (1224)
Q Consensus 33 ~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~---~~~~~---~~~~~~~~~~~~lR~~----~~~~l~~~~~~~f~~~ 99 (1224)
.-..|.+++.+|+.+...+. ..+...+..+ +++.. .+.+...+++.++|.. +|+|.++++...-.+
T Consensus 217 ~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~- 295 (1381)
T KOG0054|consen 217 GFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGE- 295 (1381)
T ss_pred ccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccC-
Confidence 44455788999998765311 1122111111 22222 2345667777777776 567777777665544
Q ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 100 TSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQ 179 (1224)
Q Consensus 100 ~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (1224)
. ++|+++|.+++|++++.++.... ..+....+.+++++.+++..--.-+++.++++.+++++..+++++.++.+++
T Consensus 296 --~-t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~ 371 (1381)
T KOG0054|consen 296 --T-TVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKR 371 (1381)
T ss_pred --C-CcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 89999999999999999985432 2333333333333333322211236777777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-H
Q 047171 180 GKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVL-V 257 (1224)
Q Consensus 180 ~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~ 257 (1224)
.++..|++...++|.++|||+||.|+||+.+.++..+.++++.+.-.|.....++..... ....+. ..+.++++. .
T Consensus 372 ~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv--~~~tF~~~v~~ 449 (1381)
T KOG0054|consen 372 LMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV--SVVTFVVFVLL 449 (1381)
T ss_pred HhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998888888877765544 222222 223344444 4
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEEC
Q 047171 258 TERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSY 337 (1224)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y 337 (1224)
..+.+++...|+.+.+...+-.|+..+...++.+.++.+|.+|+.+++..++..+. .....+....+..|+++|.+|+|
T Consensus 450 ~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~-~~~~~~~~~~~~~i~i~~~sfsW 528 (1381)
T KOG0054|consen 450 LGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD-SVERSPDEAGENAIEIKNGSFSW 528 (1381)
T ss_pred cCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc-ccccCCCCCCCceEEEeeeeEec
Confidence 46678888899988888888899999888899999999999999999986543221 11101222233469999999999
Q ss_pred CCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc
Q 047171 338 PTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404 (1224)
Q Consensus 338 ~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 404 (1224)
++. +.|+.+||||+.|||||+|++.|+|+++..+|++.++| .++||||+||+|+
T Consensus 529 ~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 529 DSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQN 595 (1381)
T ss_pred CCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhC
Confidence 752 24568999999999999999999999999999999998 4999999999999
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 405 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+||||||+||.| .+.++..++.+.|++.++++.||.|+.|.|||+|.+|||||||||+||||+|+|+||++||||+||+
T Consensus 596 gTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 596 GTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 999999999997 5788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhh
Q 047171 485 DAESER-IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNE 563 (1224)
Q Consensus 485 D~~~~~-~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~ 563 (1224)
|+++.+ .+.++++...++||+|+|||.++.+++||+|++|+||+|+++|+|+||++. ++.|.++..+...+...+
T Consensus 675 Dahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~----~~~~~~l~~~~~~~~~~~ 750 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS----GGDFAELAHEEESEQEEE 750 (1381)
T ss_pred hHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc----chhHHHHhhccchhhccc
Confidence 999865 567788778899999999999999999999999999999999999999987 778887743322211110
Q ss_pred cccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCc--cCCCCCCCchHHHH
Q 047171 564 VASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDK--NFHDNSHSPSSLLR 641 (1224)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 641 (1224)
. ................. ........ .+ .. ...+..+.+ +.++...+...+..
T Consensus 751 ~---~~~~~~~~~~~~~~~~~----~~~~~~~~---------~~---~~------~~~~~~~~~~~~~ee~~~G~v~~~v 805 (1381)
T KOG0054|consen 751 A---SEKDLESGESSRESESR----SLESLSSE---------EE---KS------KDEKEEEDKLVQEEERETGKVSWSV 805 (1381)
T ss_pred c---ccccccccccccchhhh----hhhhhccc---------cc---cc------ccccchhhHHHHHHHHhcCEeeHHH
Confidence 0 00000000000000000 00000000 00 00 000000000 00011233344444
Q ss_pred HHHHhhHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 642 LLRMSAIEWKR--TLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLK--SETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 642 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
|.+|.+..+.+ .++.+++..+...+.....+|++.|.+.-. .... .....|..+|.+++++..++.+++.+.
T Consensus 806 Y~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~----~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~ 881 (1381)
T KOG0054|consen 806 YKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGE----DNGTTTVSTSFYLGVYALLGVASSLLTLLRSFL 881 (1381)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432222 222233333444444445555555543211 1111 345678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
+...+.+++..||+++++++++.||+||| .+|+|+|+|||++|++.+|..++..+..++..++.+++.++++.+..|.
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~ 959 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW 959 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 99999999999999999999999999999 7899999999999999999999999999999999999999988888775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKK----SQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESI 873 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 873 (1224)
.. ++.+|+.+++++++.++.+. +++.++ .+++..+|++|++.|+.|||||+.+++|.+++....|.+.+..+
T Consensus 960 fl---i~~~pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f 1035 (1381)
T KOG0054|consen 960 FL---IAIIPLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFF 1035 (1381)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHH
Confidence 54 44555555555555554443 444444 45678999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 874 KQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTIL 953 (1224)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~ 953 (1224)
.......+...-.+++..+....+..++...-... .++|.+..++.+.+.....+..+.....++++.+.|++|+.+|.
T Consensus 1036 ~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~-~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~ 1114 (1381)
T KOG0054|consen 1036 LSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL-ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYT 1114 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHh
Confidence 66655555555556665555544444433332222 77899999999999988999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC
Q 047171 954 DRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033 (1224)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1033 (1224)
+.++|.+...+...+++.||..|.|+|+|++.+|.++ .++||+||||+|+||||||||||||||||||+++|+|+.+|.
T Consensus 1115 ~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~ 1193 (1381)
T KOG0054|consen 1115 DIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA 1193 (1381)
T ss_pred cCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc
Confidence 9877722222122134678999999999999999643 467999999999999999999999999999999999999999
Q ss_pred CceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCC
Q 047171 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113 (1224)
Q Consensus 1034 ~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~ 1113 (1224)
+|+|.|||+||.++++++||+++++|||||+||+||+|+||||.. +++|++||+|++.|++.++|.++|+|||++|.|+
T Consensus 1194 ~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg 1272 (1381)
T KOG0054|consen 1194 EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG 1272 (1381)
T ss_pred CCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC
Confidence 999999999999999999999999999999999999999999984 6799999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 047171 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVV 1193 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Iv 1193 (1224)
|.|||.||||.+||||||||+++||+|||||+++|++|+..||++|++.+++||||+||||++|+.+||||+|||+|+|+
T Consensus 1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1194 EQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1194 e~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|+|+|++|+++ +++.|++++.....
T Consensus 1353 EfdsP~~Ll~~-~~S~f~~~l~~~~~ 1377 (1381)
T KOG0054|consen 1353 EFDSPAELLSD-KDSLFSSLLKEAAL 1377 (1381)
T ss_pred ecCChHHHHhC-CcchHHHHHHHHHH
Confidence 99999999987 58999877766543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-155 Score=1554.36 Aligned_cols=1136 Identities=19% Similarity=0.252 Sum_probs=851.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChH--HHHHHHHHH--------HHHHHH--HHHHHHHHHHHHHHHHHH
Q 047171 19 LLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS--ISIEAVDKV--------PEKGMC--WTRTAERQASRIRMEYLK 86 (1224)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~--------~~~~~~--~~~~~~~~~~~lR~~~~~ 86 (1224)
+++++++.++..++....|++++.++|.+...+.. .+...+..+ +...+. ..+.+.++...+|..+|+
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~ 382 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFR 382 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666667777788999999877543211 111111100 111121 235566677777778999
Q ss_pred HHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047171 87 SVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPG 166 (1224)
Q Consensus 87 ~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 166 (1224)
|+++++..++++ . ++|++++++++|++.+++++. .+..++..++.+++++++++..-...+++.++++.+++++.
T Consensus 383 k~L~l~~~~~~~---~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 383 KSLRLTHEGRKK---F-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHhcCChhhcCC---C-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 4 999999999999999999874 45556666665555555444322222233333344555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 167 IVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAW 246 (1224)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1224)
.++.+++++..++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++++.+...+.....++...+.... ...
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~-~~~ 536 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI-PVL 536 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 7788889999999999999999999999999999999999999999999988887777666665555433322111 113
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccc
Q 047171 247 AFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRG 326 (1224)
Q Consensus 247 ~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (1224)
+.++++|++.+.+|.+|+|.+++++.+...+..|+..+...+..+.++.++++||.++++.++..+... . ......+
T Consensus 537 v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~-~~~~~~~ 613 (1622)
T PLN03130 537 VTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--P-PLEPGLP 613 (1622)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--C-cccCCCC
Confidence 445678999999999999999999988888899999988889999999999999999997654322111 0 0111134
Q ss_pred cEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEECCEecCCCCHHHHhcc
Q 047171 327 EIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVK-GNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
.|+++||+|+|++. ++|+.+|||||||||||||+++|+|+++|++ |+|.+ |++
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGT 680 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCe
Confidence 69999999999742 2566999999999999999999999999999 99985 447
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+||+|+||||++||+|||+||+| .+++++.++++.|+++++++.||+|++|.+||+|.+|||||||||+||||+|++|
T Consensus 681 Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~ 759 (1622)
T PLN03130 681 VAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1622)
T ss_pred EEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999997 5789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHH
Q 047171 473 KILLLDEATSALDAESERIV-QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSK 551 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~ 551 (1224)
+||||||||||||+++++.+ ++++....+++|+|+||||++.++.||+|++|++|+|+++|+|+||++. ++.|.+
T Consensus 760 ~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~----~~~~~~ 835 (1622)
T PLN03130 760 DVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN----GPLFQK 835 (1622)
T ss_pred CEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc----chhHHH
Confidence 99999999999999998876 5677777789999999999999999999999999999999999999987 788888
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCC
Q 047171 552 MVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHD 631 (1224)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1224)
+++.+....+.... .......+.. .. +. .......... ........... . ......+ +
T Consensus 836 l~~~~~~~~~~~~~--~~~~~~~~~~-----~~-~~-~~~~~~~~~~-----~~~~~~~~~~~----~-~~~~~~e---~ 893 (1622)
T PLN03130 836 LMENAGKMEEYVEE--NGEEEDDQTS-----SK-PV-ANGNANNLKK-----DSSSKKKSKEG----K-SVLIKQE---E 893 (1622)
T ss_pred HHHhcccccccccc--cccccccccc-----cc-cc-cccccccccc-----ccccccccccc----c-hhhhhHH---H
Confidence 87654321110000 0000000000 00 00 0000000000 00000000000 0 0000000 0
Q ss_pred CCCCchHHHHHHHHhhHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHH
Q 047171 632 NSHSPSSLLRLLRMSAIE--WKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLI 709 (1224)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 709 (1224)
...+...+..+.+|.+.. ++..++.+++.++..++....+++++.|.+.... .......|.++|++++++..+
T Consensus 894 ~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-----~~~~~~~~~~i~~~l~~~~~i 968 (1622)
T PLN03130 894 RETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTP-----KTHGPLFYNLIYALLSFGQVL 968 (1622)
T ss_pred HhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----CCCchhHHHHHHHHHHHHHHH
Confidence 112222344444443331 1122222222333333334445555555442211 112234577788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 710 ANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYT 789 (1224)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 789 (1224)
+.+++.+++.+.+.++..++|.+++++++++|++||| .+++|+++||+++|++.++..++..+..++..++.+++.++
T Consensus 969 ~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 969 VTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 78899999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhh
Q 047171 790 LSLLVTWRVAIVMIAVQPLNIGCFYSR---SVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMK 866 (1224)
Q Consensus 790 ~~~~~~~~l~lv~l~~~pl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 866 (1224)
++++++|...+ +++|+.++++... .+..+...+......++..+++.|+++|++|||+|+.++++.+.+.+..+
T Consensus 1047 ~i~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~ 1123 (1622)
T PLN03130 1047 LIGIVSTISLW---AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMD 1123 (1622)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHH
Confidence 87777764332 2333333222222 22223333334445567889999999999999999999999888888777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 867 GPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQG-LVS-----PKQLFQAFFLLMSTGKNIADAGSMTSDIA 940 (1224)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~t-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1224)
...+..+.......+......++.. +++++.+...+..+ ... .+.+..++.+......++..+...+..++
T Consensus 1124 ~~~~~~~~~~~~~~wl~~~l~~~~~---~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e 1200 (1622)
T PLN03130 1124 NNIRFTLVNMSSNRWLAIRLETLGG---LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAE 1200 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666544433333232222222221 11222222323322 111 23344444455555667777778888999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChH
Q 047171 941 KGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020 (1224)
Q Consensus 941 ~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKS 1020 (1224)
.++.+++|+.++++.++|.+........+..||..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999998776543211111111235667899999999999643 34799999999999999999999999999
Q ss_pred HHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHH
Q 047171 1021 TIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFIS 1100 (1224)
Q Consensus 1021 TL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~ 1100 (1224)
||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||++++ .++|+|+|+|++.+++++||.
T Consensus 1280 TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~ 1358 (1622)
T PLN03130 1280 SMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIR 1358 (1622)
T ss_pred HHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 579999999999999999999
Q ss_pred hcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh
Q 047171 1101 STEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK 1180 (1224)
Q Consensus 1101 ~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~ 1180 (1224)
++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||.+||+.|+++|++.+++||+|+||||++|+++
T Consensus 1359 ~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~ 1438 (1622)
T PLN03130 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 1438 (1622)
T ss_pred hCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1181 ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1181 aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
||||+||++|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~~-~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLSN-EGSAFSKMVQSTGA 1476 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHhC-CCCHHHHHHHHcCh
Confidence 999999999999999999999986 47999999987643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-154 Score=1543.67 Aligned_cols=1131 Identities=20% Similarity=0.253 Sum_probs=847.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChH--HHHHHHHHH-------HH-HHHH--HHHHHHHHHHHHHHHHHH
Q 047171 19 LLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS--ISIEAVDKV-------PE-KGMC--WTRTAERQASRIRMEYLK 86 (1224)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~-------~~-~~~~--~~~~~~~~~~~lR~~~~~ 86 (1224)
++++.++.++..++....|++++.++|.+...+.. .+...+..+ +. ..+. ..+.+.++...++..+|+
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~ 382 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFH 382 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777788999999987533211 111111100 11 1111 245666777777779999
Q ss_pred HHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Q 047171 87 SVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFS---LLFI 163 (1224)
Q Consensus 87 ~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~---~~~~ 163 (1224)
|+++++..++++ . ++|++++++++|++.+++++ ..+..++..++.++++++++ .+.+++++++.+ .+++
T Consensus 383 k~l~l~~~~~~~---~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~~l~~ 454 (1495)
T PLN03232 383 KSLRLTHEARKN---F-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLILFLLI 454 (1495)
T ss_pred HHhcCChhhcCC---C-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHH
Confidence 999999999998 4 99999999999999999986 44555555554444444332 233444333222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 164 VPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTY 243 (1224)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1224)
++..++.++.++..++.++..+++.+.+.|.++||++||+|++|+.+.+++++..+++.+...+.....++...+... .
T Consensus 455 pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~-~ 533 (1495)
T PLN03232 455 PLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS-I 533 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 456678899999999999999999999999999999999999999999999999988888777776665544332211 1
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 047171 244 GAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAY 323 (1224)
Q Consensus 244 ~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 323 (1224)
...+.++++|++++.+|.+|+|.+++++.+...+..|+..+...+..+.++.+|++||.++++.+++.+... .....
T Consensus 534 ~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~~ 610 (1495)
T PLN03232 534 PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQP 610 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcCC
Confidence 123335678999999999999999999999999999999888889999999999999999998665422111 11111
Q ss_pred ccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh
Q 047171 324 LRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390 (1224)
Q Consensus 324 ~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 390 (1224)
..+.|+++||+|+|++. ++|++++||||||||||||+++|+|+|+|++|.+. ++|
T Consensus 611 ~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~ 678 (1495)
T PLN03232 611 GAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIR 678 (1495)
T ss_pred CCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------Eec
Confidence 23469999999999742 25669999999999999999999999999998763 356
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
++|+||+|+||||++||+|||+||+| .++++++++++.|+++++++.||+|++|.+||+|.+||||||||||||||+++
T Consensus 679 ~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 679 GSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred CcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 78999999999999999999999986 68899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchH
Q 047171 471 DPKILLLDEATSALDAESERIVQ-EALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAY 549 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y 549 (1224)
+|+||||||||||||+++++.+. +++....+++|+|+||||++.++.||+|++|++|+|+++|+|+||++. ++.|
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~----~~~~ 833 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS----GSLF 833 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc----chhH
Confidence 99999999999999999988774 556667789999999999999999999999999999999999999987 7889
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccC
Q 047171 550 SKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNF 629 (1224)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1224)
.++++.+....+.... ..+. +.... ..... ... ... .. ........... ....+.+
T Consensus 834 ~~l~~~~~~~~~~~~~--~~~~--~~~~~-~~~~~----~~~-~~~-~~------~~~~~~~~~~~-----~~~~~~e-- 889 (1495)
T PLN03232 834 KKLMENAGKMDATQEV--NTND--ENILK-LGPTV----TID-VSE-RN------LGSTKQGKRGR-----SVLVKQE-- 889 (1495)
T ss_pred HHHHHhcccccccccc--cccc--ccccc-ccccc----ccc-ccc-cc------cccccccccch-----hhhhhHH--
Confidence 8887654321110000 0000 00000 00000 000 000 00 00000000000 0000000
Q ss_pred CCCCCCchHHHHHHHHhhHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHH
Q 047171 630 HDNSHSPSSLLRLLRMSAIEW--KRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLT 707 (1224)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 707 (1224)
+...+...+..+.+|.+..+ +...+.+++.++..++.....+|++.|.+. ..........|+.+|++++++.
T Consensus 890 -~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~-----~~~~~~~~~~~l~~y~~l~~~~ 963 (1495)
T PLN03232 890 -ERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQ-----STPKSYSPGFYIVVYALLGFGQ 963 (1495)
T ss_pred -HHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCCCCCcchHHHHHHHHHHHH
Confidence 01122233444444444322 222222222222222222333444433321 1000112356888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 708 LIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLA 787 (1224)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~ 787 (1224)
.++.+++.+++...+.++..++|++++++++++|++||+ .+++|+++||+++|++.++..++..+..++..++.++++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1041 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLST 1041 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 788999999999999999999999998888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHH
Q 047171 788 YTLSLLVTWRVAIVMIAVQPLNIGCFYSR---SVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRET 864 (1224)
Q Consensus 788 ~~~~~~~~~~l~lv~l~~~pl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~ 864 (1224)
+++++..++...+ +++|+.+.+.... .+..+...+......++..+++.|++.|++|||+|+.++++.+++.+.
T Consensus 1042 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~ 1118 (1495)
T PLN03232 1042 FALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKS 1118 (1495)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHH
Confidence 7777666653322 2233333322222 222233444445566778899999999999999999999998888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 865 MKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMN-QGLVS-----PKQLFQAFFLLMSTGKNIADAGSMTSD 938 (1224)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~t-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1224)
.+...+..+.......+.......+ +.+++++.+...+. .+.+. .+.+..++.+......++..+...+.+
T Consensus 1119 ~~~~~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~ 1195 (1495)
T PLN03232 1119 MDNNIRFTLANTSSNRWLTIRLETL---GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASK 1195 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665544333322222222221 12222222333333 23221 122223444455556677888889999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCC
Q 047171 939 IAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSG 1018 (1224)
Q Consensus 939 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsG 1018 (1224)
++.++.+++|+.++++.++|.+........+..||..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSG 1274 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAG 1274 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCC
Confidence 9999999999999998776543211111111234667899999999999633 357999999999999999999999999
Q ss_pred hHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHH
Q 047171 1019 KSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098 (1224)
Q Consensus 1019 KSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~ 1098 (1224)
||||+++|+|+|+|++|+|.|||+|++++++++||++|++|||||+||+|||||||++++ .++|+|+++|++.++++++
T Consensus 1275 KSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~ 1353 (1495)
T PLN03232 1275 KSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDV 1353 (1495)
T ss_pred HHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 6899999999999999999
Q ss_pred HHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1099 I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
|.++|+||||.+||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++++
T Consensus 1354 I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti 1433 (1495)
T PLN03232 1354 IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI 1433 (1495)
T ss_pred HHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1179 QKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1179 ~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
++||+|+||++|+|+|+|||+||+++ ++|.|++|++.+..
T Consensus 1434 ~~~DrIlVL~~G~ivE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1434 IDCDKILVLSSGQVLEYDSPQELLSR-DTSAFFRMVHSTGP 1473 (1495)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 99999999999999999999999986 35799999987654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-149 Score=1496.33 Aligned_cols=1160 Identities=20% Similarity=0.221 Sum_probs=870.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-hH--HHHHHHH---HH-----HHH--HHHHHHHHHHHHHHHHHHHHH
Q 047171 20 LFGTVGSIGDGMMTPLTMYILSMVINELGTSD-IS--ISIEAVD---KV-----PEK--GMCWTRTAERQASRIRMEYLK 86 (1224)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~--~~~~~~~---~~-----~~~--~~~~~~~~~~~~~~lR~~~~~ 86 (1224)
+.++++.++..++....|++++.++|.+...+ .. .+..... .. ... .+...+.+.++...++..+|+
T Consensus 320 l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~ 399 (1522)
T TIGR00957 320 LMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYR 399 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666667789999999764321 11 1111000 00 111 122345677888888899999
Q ss_pred HHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047171 87 SVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPG 166 (1224)
Q Consensus 87 ~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 166 (1224)
|+++++..++++ . ++|++++++++|++.+.++. ..+..++..++.+++++++++..-...+++.++++++++++.
T Consensus 400 K~L~l~~~~~~~---~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~ 474 (1522)
T TIGR00957 400 KALVITNSARKS---S-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLN 474 (1522)
T ss_pred HHHhCChhhcCC---C-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999998 4 99999999999999999865 344555555555555444433322224455666667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 167 IVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAW 246 (1224)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1224)
.++.+++++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+......+........ ...
T Consensus 475 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~-~~~ 553 (1522)
T TIGR00957 475 AVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT-PFL 553 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 8889999999999999999999999999999999999999999999999999888777666555544432221111 112
Q ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc
Q 047171 247 AFQSWVGSVLVTE--RGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYL 324 (1224)
Q Consensus 247 ~~~~~~g~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 324 (1224)
+.++.++.+.+.. +.++++.+++++.++..+..|+..+...+..+.++.+|.+||.++++.++..+.........+..
T Consensus 554 ~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 633 (1522)
T TIGR00957 554 VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGE 633 (1522)
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCC
Confidence 2223345566653 56889999988887778888999999999999999999999999998654321110000000111
Q ss_pred cccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcc
Q 047171 325 RGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
.+.|+++|++|+|++. ++|+.++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 634 ~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 700 (1522)
T TIGR00957 634 GNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------S 700 (1522)
T ss_pred CCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------E
Confidence 2369999999999742 25679999999999999999999999999999999997 5
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+||+|+||+|++||+|||.||.+ .++++..++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||++++|
T Consensus 701 i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~ 779 (1522)
T TIGR00957 701 VAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 779 (1522)
T ss_pred EEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999976 4567788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH---HcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchH
Q 047171 473 KILLLDEATSALDAESERIVQEALDQ---ASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAY 549 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y 549 (1224)
+|+|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|+++|+|+|+.+. ++.|
T Consensus 780 ~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~----~~~~ 855 (1522)
T TIGR00957 780 DIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR----DGAF 855 (1522)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc----chhH
Confidence 99999999999999999999988853 4578999999999999999999999999999999999999986 6788
Q ss_pred HHHHHHHHHhhhhhcccCCCCC--CCCcccccccCCCCC-----CCCCCCCCCCCCCCCCCCCCCc-cc-cccCcccccc
Q 047171 550 SKMVQLQQSAMRNEVASGSYNP--TKSKSHHSLMSAQTP-----HTPINEGSSYQNSPIYPLSPTF-SI-SMTGSFQMHS 620 (1224)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 620 (1224)
.++...+......+........ ..+.......+.... ...................... .. ..........
T Consensus 856 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1522)
T TIGR00957 856 AEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEE 935 (1522)
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence 8877644321110000000000 000000000000000 0000000000000000000000 00 0000000000
Q ss_pred -cccccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHH
Q 047171 621 -VENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLI 699 (1224)
Q Consensus 621 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1224)
.....++...........++.|++... +...++.+++..+..++....+++++.|.+..... ........|..+
T Consensus 936 ~~~~~~~e~~~~g~v~~~~y~~Y~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~---~~~~~~~~~~~i 1010 (1522)
T TIGR00957 936 TWKLMEADKAQTGQVELSVYWDYMKAIG--LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVN---GTQNNTSLRLSV 1010 (1522)
T ss_pred hhhhHHHHHHhcCcccHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---CCCCCcchHHHH
Confidence 000000000001112233334443322 22222222223333334444556666555421100 001122346668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 047171 700 FLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQ 779 (1224)
Q Consensus 700 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~ 779 (1224)
|++++++..++.++..+++.+.+.++..++|++++++++++|++||| .+++|+++||+++|++.++..++..+..++.
T Consensus 1011 y~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~ 1088 (1522)
T TIGR00957 1011 YGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889899999999999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHH
Q 047171 780 VFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILD 859 (1224)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~ 859 (1224)
.++.+++.++++++.+|.+++++++++++.+.+...+.+..+...+......++..+++.|++.|+++||+|++++++.+
T Consensus 1089 ~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~ 1168 (1522)
T TIGR00957 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH 1168 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH
Confidence 99999998888888888766655555444444333333444444455556677889999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 860 LFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIM-NQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSD 938 (1224)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1224)
++.+..+...+..+.......+.....+++..+ ++++.+...+ ..+.+++|.+.+++.+......++..+...+.+
T Consensus 1169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~ 1245 (1522)
T TIGR00957 1169 QSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSE 1245 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887766555555544444444332 2233333333 357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCC
Q 047171 939 IAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSG 1018 (1224)
Q Consensus 939 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsG 1018 (1224)
++.++.+++|+.++++.++|.+........+..||..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsG 1324 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAG 1324 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCC
Confidence 9999999999999998766532111111111235667899999999999754 347999999999999999999999999
Q ss_pred hHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHH
Q 047171 1019 KSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098 (1224)
Q Consensus 1019 KSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~ 1098 (1224)
||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||+++. .++|+|+|+|++.++++++
T Consensus 1325 KSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~ 1403 (1522)
T TIGR00957 1325 KSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTF 1403 (1522)
T ss_pred HHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999999763 6899999999999999999
Q ss_pred HHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1099 I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
|.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++++
T Consensus 1404 I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti 1483 (1522)
T TIGR00957 1404 VSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483 (1522)
T ss_pred HhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHh
Q 047171 1179 QKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217 (1224)
Q Consensus 1179 ~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q 1217 (1224)
.+||||+||++|+|+|+|+|+||+++ +|.|++|+++.
T Consensus 1484 ~~~DrIlVld~G~IvE~G~~~eLl~~--~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1484 MDYTRVIVLDKGEVAEFGAPSNLLQQ--RGIFYSMAKDA 1520 (1522)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHHc
Confidence 99999999999999999999999987 79999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-142 Score=1424.57 Aligned_cols=1146 Identities=18% Similarity=0.196 Sum_probs=855.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChH---HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 047171 19 LLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS---ISIEAVDKV----------PEKGMCWTRTAERQASRIRMEYL 85 (1224)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~----------~~~~~~~~~~~~~~~~~lR~~~~ 85 (1224)
+++.+++.++..++....|++++.+++.+...+.. .+...+..+ ....+...+.+.++-..++..+|
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if 325 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIF 325 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777788999999876432211 111110000 11123344556666667777899
Q ss_pred HHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 86 KSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVP 165 (1224)
Q Consensus 86 ~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~ 165 (1224)
+|+++++...+.+ +.. .+|+++|.+++|++.+.+++.. +..++...+.++++++++..+..+.+++.++++++++++
T Consensus 326 ~K~l~ls~~~~~~-~~~-~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl 402 (1560)
T PTZ00243 326 EKCFTISSKSLAQ-PDM-NTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL 402 (1560)
T ss_pred HHHHhCChhhhCC-CCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999887752 013 8999999999999999999844 456667777777777777776666888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 166 GIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGA 245 (1224)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1224)
..++.++..+..++.++..+++.+.+.|.++|||+||.|+||+.+.+++.+.++++.+...+......+...+..... .
T Consensus 403 ~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p-~ 481 (1560)
T PTZ00243 403 NGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATP-T 481 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999888887776666655443331111 1
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CC-c-----
Q 047171 246 WAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVIN----SE-D----- 315 (1224)
Q Consensus 246 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~----~~-~----- 315 (1224)
.+.++.++++.+.++.+|++.+|+++.++..+..|+..+...+..+.++.+|++||.++|+.++... +. +
T Consensus 482 l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~ 561 (1560)
T PTZ00243 482 LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQ 561 (1560)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccc
Confidence 1222345677888899999999999999999999999999999999999999999999997543100 00 0
Q ss_pred -------c------cc-------cc---------------------------cccccccEE-------------------
Q 047171 316 -------E------IG-------KT---------------------------LAYLRGEIE------------------- 329 (1224)
Q Consensus 316 -------~------~~-------~~---------------------------~~~~~~~i~------------------- 329 (1224)
. +. .. .....+.+.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1560)
T PTZ00243 562 REHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEG 641 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccc
Confidence 0 00 00 000001233
Q ss_pred ----------------------------------EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 047171 330 ----------------------------------FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375 (1224)
Q Consensus 330 ----------------------------------~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 375 (1224)
++|++|.. ++|+.++|+||||||||||+++|+|+++|++|+|.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i---~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 642 GTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSV---PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred cccccccccccccccccccccccccccccCCceeEeeeEEEE---CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 44444443 24669999999999999999999999999999998
Q ss_pred ECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCC
Q 047171 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455 (1224)
Q Consensus 376 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 455 (1224)
++ ++||||+|+|++|++||+|||.++.+ .+.+++.++.+.++++++++.+|+|++|.+|++|.+||
T Consensus 719 ~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LS 784 (1560)
T PTZ00243 719 AE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784 (1560)
T ss_pred EC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCC
Confidence 74 36999999999999999999999875 34567778888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecC
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE-ALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~ 534 (1224)
|||||||+||||++.+|+|||||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999998776654 4555557899999999999999999999999999999999
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 047171 535 HDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTG 614 (1224)
Q Consensus 535 ~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (1224)
++|+++. +.|.++........+... ............ ........ ........ ..........
T Consensus 865 ~~~l~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~------~~~~~~~~~~ 927 (1560)
T PTZ00243 865 SADFMRT-----SLYATLAAELKENKDSKE--GDADAEVAEVDA---APGGAVDH-EPPVAKQE------GNAEGGDGAA 927 (1560)
T ss_pred HHHHHhC-----hHHHHHHHhhcccccccc--cccccccccccc---cccccccc-cccccccc------cccccccccc
Confidence 9999863 457666543221110000 000000000000 00000000 00000000 0000000000
Q ss_pred cccccccccccCccCCCCCCCchHHHHHHHHhhHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhh
Q 047171 615 SFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAIEW--KRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE 692 (1224)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1224)
. ..........++ ...+...++.+.+|.+... ...+..++..++..++.....++++.|.... ....
T Consensus 928 ~-~~~~~~l~~~e~---~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~-------~~~~ 996 (1560)
T PTZ00243 928 L-DAAAGRLMTREE---KASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRS-------FKLS 996 (1560)
T ss_pred c-ccccchhhhHHH---HhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cCCC
Confidence 0 000000000000 0112223333433333211 1111111112222233333344444443211 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHH
Q 047171 693 TRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIAD 772 (1224)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~ 772 (1224)
...|+.+|+++.++..++.++..+.....+.+...++|++++++++++|+.||| .+++|+++||+++|++.++..+..
T Consensus 997 ~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~ 1074 (1560)
T PTZ00243 997 AATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPM 1074 (1560)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHH
Confidence 234667777777777777777777777888888999999999999999999999 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhc
Q 047171 773 RMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFS 852 (1224)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~ 852 (1224)
.+..++..++.+++.++++++.+|.+.+++++++.+...+...+.+..+...+......++..+++.|++.|+++||+|+
T Consensus 1075 ~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~ 1154 (1560)
T PTZ00243 1075 SYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYG 1154 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCc
Confidence 99999999999988888888888744333322222222222223333344444455566778999999999999999999
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHH
Q 047171 853 SQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGR--IMNQGLVSPKQLFQAFFLLMSTGKNIA 930 (1224)
Q Consensus 853 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~t~~~~~~~~~~~~~~~~~~~ 930 (1224)
.++.+.+++.+..+...+..+.......+......++..+..+++.+++.. +...+.++++.+..++.+......++.
T Consensus 1155 ~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~ 1234 (1560)
T PTZ00243 1155 KAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLN 1234 (1560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877766666665555565555544444444433 233455788888777777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCC-CC-C-----------------------CCCCC--CCCCCCcccEEEEEE
Q 047171 931 DAGSMTSDIAKGSSAIRTIFTILDRKSEID-PE-D-----------------------PKASE--DIEEPTKGFIELKNV 983 (1224)
Q Consensus 931 ~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~-~~-~-----------------------~~~~~--~~~~~~~g~I~~~~v 983 (1224)
.+...+.+++.++.+++|+.++++..++.+ +. + +.... .+.++..|.|+|+||
T Consensus 1235 ~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nV 1314 (1560)
T PTZ00243 1235 WLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGV 1314 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEE
Confidence 999999999999999999999996433211 00 0 00000 011234578999999
Q ss_pred EEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCC
Q 047171 984 FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP 1063 (1224)
Q Consensus 984 sf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp 1063 (1224)
+|+|+++ .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||
T Consensus 1315 sf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp 1393 (1560)
T PTZ00243 1315 QMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393 (1560)
T ss_pred EEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC
Confidence 9999753 356999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC-CCEEEEec
Q 047171 1064 TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN-PMILLLDE 1142 (1224)
Q Consensus 1064 ~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~-p~ILlLDE 1142 (1224)
+||+|||||||+++ +.++|+|+|+|++.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+||||||
T Consensus 1394 ~LF~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDE 1472 (1560)
T PTZ00243 1394 VLFDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE 1472 (1560)
T ss_pred ccccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 99999999999987 46899999999999999999999999999999999999999999999999999995 89999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhh
Q 047171 1143 ATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1143 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
|||+||++||+.|+++|++.++++|+|+||||++++++||+|+||++|+|+|+|+|+||+++ ++|.|++|++.+.
T Consensus 1473 ATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~-~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1473 ATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN-RQSIFHSMVEALG 1547 (1560)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999985 4899999998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-140 Score=1405.57 Aligned_cols=1153 Identities=18% Similarity=0.194 Sum_probs=834.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcCCCh----HHHHHHHH---HHH---H----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 24 VGSIGDGMMTPLTMYILSMVINELGTSDI----SISIEAVD---KVP---E----KGMCWTRTAERQASRIRMEYLKSVL 89 (1224)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~---~~~---~----~~~~~~~~~~~~~~~lR~~~~~~l~ 89 (1224)
+..++..++....|++++++++.+...+. ..+...+. ..+ + ..+.....+.++-..+...+|+|++
T Consensus 87 ~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 87 ILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556667889999998742211 11111110 001 1 1222333444455555555699999
Q ss_pred cCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047171 90 RQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVF 169 (1224)
Q Consensus 90 ~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 169 (1224)
+++...+++ . ++|++++++++|++.+.+++... ..++...+.+++++++++....+.+++.++++++++++..++
T Consensus 167 ~l~~~~~~~---~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 167 KLSSRVLDK---I-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred hCCHHHhcC---C-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 4 99999999999999999987654 344455565666666666666667888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 170 GKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAWAFQ 249 (1224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1224)
++++.+..++.++..+++.+.+.|.++|||+||+|+||+.+.+++.+.++++.+...+......+...+... ....+.+
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~-~~~~~~~ 320 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF-SGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888877766655443332211 2223344
Q ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccE
Q 047171 250 SWVGSVLVTERGEKGGLVFVAGICTILGGVGIM-SALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEI 328 (1224)
Q Consensus 250 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 328 (1224)
+.++++.+..+ ++++.+|+++.++..+..|+. .+...+..+.++.+|++||.++|+.++..... .. .....|
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~----~~--~~~~~i 393 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE----YN--LTTTEV 393 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----cc--CCCCce
Confidence 55667766644 688999998888777777875 56777899999999999999999765431110 00 011246
Q ss_pred EEEeEEEECCCC--------------------------------------------CCCCEEEEEcCCCCcHHHHHHHHh
Q 047171 329 EFKDVDFSYPTR--------------------------------------------PDTPTIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 329 ~~~~v~f~y~~~--------------------------------------------~~~~~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+++|++|+|+.. ++|+.++|+||||||||||+++|+
T Consensus 394 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~ 473 (1490)
T TIGR01271 394 EMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIM 473 (1490)
T ss_pred EEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 666666666310 245589999999999999999999
Q ss_pred cCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccc
Q 047171 365 RFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE 444 (1224)
Q Consensus 365 ~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 444 (1224)
|+++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.|++++++..+|+|++
T Consensus 474 G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~ 539 (1490)
T TIGR01271 474 GELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDK 539 (1490)
T ss_pred CCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccc
Confidence 99999999999998 4999999999999999999999975 445667777888889999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHcCCCeEEEEeCCcchhhccCEEEE
Q 047171 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE-ALDQASQGRTMIIIAHRLSTIRKADLIGV 523 (1224)
Q Consensus 445 t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~i~H~l~~~~~ad~i~v 523 (1224)
|.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ ++....+++|+|+|||+++.+..||+|++
T Consensus 540 t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~ 619 (1490)
T TIGR01271 540 TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILL 619 (1490)
T ss_pred ccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999998886 56777789999999999999999999999
Q ss_pred EeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhh----h------hhc------c--c-----C-C-----CCCCCC
Q 047171 524 LQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAM----R------NEV------A--S-----G-S-----YNPTKS 574 (1224)
Q Consensus 524 l~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~----~------~~~------~--~-----~-~-----~~~~~~ 574 (1224)
|++|+|++.|+++++.+. ++.|.+.+....... + .+. . . . . ..+...
T Consensus 620 l~~g~i~~~g~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1490)
T TIGR01271 620 LHEGVCYFYGTFSELQAK----RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPE 695 (1490)
T ss_pred EECCEEEEEcCHHHHHhc----ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999875 556665553110000 0 000 0 0 0 0 000000
Q ss_pred c-ccc--c---cc---------------CC--CCCCCCCCCCC-------C----CC-CCCCCC----------CC----
Q 047171 575 K-SHH--S---LM---------------SA--QTPHTPINEGS-------S----YQ-NSPIYP----------LS---- 605 (1224)
Q Consensus 575 ~-~~~--~---~~---------------~~--~~~~~~~~~~~-------~----~~-~~~~~~----------~~---- 605 (1224)
. ... . .. .. ........... . .. ..+... ..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1490)
T TIGR01271 696 FAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSV 775 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccch
Confidence 0 000 0 00 00 00000000000 0 00 000000 00
Q ss_pred -----CC--c---c-c---cc-------------cC-cc--ccccccc-----cc--Ccc-------CCCCCCCchHHHH
Q 047171 606 -----PT--F---S-I---SM-------------TG-SF--QMHSVEN-----QN--DKN-------FHDNSHSPSSLLR 641 (1224)
Q Consensus 606 -----~~--~---~-~---~~-------------~~-~~--~~~~~~~-----~~--~~~-------~~~~~~~~~~~~~ 641 (1224)
.. . . . .. .. .. .....+. .+ ++. .++...+...+..
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~v 855 (1490)
T TIGR01271 776 LQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNT 855 (1490)
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHH
Confidence 00 0 0 0 00 00 00 0000000 00 000 0000111233344
Q ss_pred HHHHhhHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--hc-cC-chh-h---------hhhHHHH-HHHHHHHH
Q 047171 642 LLRMSAIE--WKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAY--FI-KD-DSK-L---------KSETRLY-CLIFLGLA 704 (1224)
Q Consensus 642 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~-~---------~~~~~~~-~~~~~~l~ 704 (1224)
|++|.+.. +..+++.+++.++..++.....+|+..+.... +. .. ... . .....+| ..+|++++
T Consensus 856 Y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1490)
T TIGR01271 856 YLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTA 935 (1490)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHH
Confidence 44443321 22222222323333344444445554432200 00 00 000 0 0011222 44556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 047171 705 FLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSA 784 (1224)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~ 784 (1224)
++..++.+++.+++.+.+.++..++|.++++++++.|++||+ .+++|+++||+++|++.++..++..+..++..++.+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHH
Q 047171 785 SLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRET 864 (1224)
Q Consensus 785 ~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~ 864 (1224)
++.++++++++|.+.+++++++.+.+.+...+.+..+...+......++..+++.|++.|+.|||+|++++++.+++.+.
T Consensus 1014 i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~ 1093 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHH
Confidence 88888888888876543333322222222222333344444455566778999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 865 MKGPKKESIKQSWFSGIGLFSSQFLTTASITLT--FWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKG 942 (1224)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1224)
.+...+..+.......+......++..+....+ ++++. ..++.+.+..++.+......++..+...+.+++..
T Consensus 1094 ~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987665544333333333333333222211111 11221 22445555555556666667778888889999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCC--------------CCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcE
Q 047171 943 SSAIRTIFTILDRKSEIDPEDPK--------------ASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT 1008 (1224)
Q Consensus 943 ~~a~~ri~~~~~~~~~~~~~~~~--------------~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~ 1008 (1224)
+.+++|+.++++.+++....... ...+..||..|.|+|+||+|+|++. .+++|+|+||+|+|||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 99999999999876653211100 0111235667899999999999753 46799999999999999
Q ss_pred EEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHH
Q 047171 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRK 1088 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~ 1088 (1224)
||||||||||||||+++|+|+|+ ++|+|+|||+|+++++++.+|++|+||||||+||+||||+||+++. .++|+++|+
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHH
Confidence 99999999999999999999998 7999999999999999999999999999999999999999999874 679999999
Q ss_pred HHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeE
Q 047171 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTC 1168 (1224)
Q Consensus 1089 al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~Tv 1168 (1224)
|++.++++++|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||.+||+.|++.|++.+++|||
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1169 I~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|+||||++++.+||+|+||++|+|+|.|+|++|++. +|.|++|++.+..
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~--~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC--CcHHHHHHHHhCh
Confidence 999999999999999999999999999999999975 8999999987654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-111 Score=983.39 Aligned_cols=576 Identities=37% Similarity=0.583 Sum_probs=547.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 637 SSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHY 716 (1224)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 716 (1224)
..+++++.+.+++|+++..+.++.++........|++++++++.+...++. .......+..+.++.+++.++++++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS--ADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999988762211 223344566778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 717 NFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTW 796 (1224)
Q Consensus 717 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1224)
++.++++++..++|..+|+++++++++||| .|.+|++++|++.|+..+.+.++..+...+.+.+..++++++|++.+|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHH
Q 047171 797 RVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQS 876 (1224)
Q Consensus 797 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 876 (1224)
.++++.++.+|++++...+++++.++.+++.+++.++.++...|.+.+++|||+|+.|+...++|.+..+...+...+..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047171 877 WFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRK 956 (1224)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 956 (1224)
...++++....+...+....+++||+.++..|.+|.|++..+++|......++..+...++++.++..|.+|+++++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
|..++.. .. .+....|.|+|+||+|+||+||+.+||+|+||+|+|||.||+|||||+||||++++|+|||+|++|+
T Consensus 449 P~i~~~G-~~---~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 449 PRIPLTG-TL---APDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred CCCCCCC-cc---ccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 8876541 11 1224678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
|++||+||+++++++||++||+|.|||.||++||+|||.||.+.++||||++|+++|++||||..+|+||||.|||+|.+
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
|||||||||||||||+|||+||||||||||||+++|..||++|++..+++|||+|||||+||++||+|+|+++|+|+|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHHhhccC
Q 047171 1197 TQSSLLSMGNGGAYYSLIKMQASRS 1221 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~~q~~~~ 1221 (1224)
||+||+++ ++|.|++|+++|....
T Consensus 685 ~h~eLl~~-~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 685 THDELLSK-PNGLYAKLVQRQLDSG 708 (716)
T ss_pred cHHHHhhC-cccHHHHHHHHhcccC
Confidence 99999998 5799999999987543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-107 Score=947.93 Aligned_cols=546 Identities=40% Similarity=0.591 Sum_probs=507.2
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC-CCh-HHHHHH---HH--------HHHHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGT-SDI-SISIEA---VD--------KVPEKGMCW 69 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~-~~~~~~---~~--------~~~~~~~~~ 69 (1224)
.++|++.|+++.+ +++..+.++.++.+....+.|.+.|+++|.+.. .+. ..+... +. ..+++.+++
T Consensus 134 ~~~rl~~l~~~~~-~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEW-KWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhH-HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999864 456788888888888888899999999998765 221 111110 00 017788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 047171 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSW 149 (1224)
Q Consensus 70 ~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1224)
.++++++..++|.++|+++++++++|||+ + ++|||+||++.|+..+.+.++..+...+.+++..++++++|+++||
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~---n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDE---N-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcc---C-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 99999999999999999999999999999 5 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 047171 150 RLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQG 229 (1224)
Q Consensus 150 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 229 (1224)
+|+++.++.+|+++++..+++++.++..++.|++.++.+.+++|.+++|||||+|+.|+.|.+||.+..++..+...|.+
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047171 230 LTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRV 308 (1224)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 308 (1224)
...+.+.... +..+...+.++++|++++..|.+|.|.+.+|++|......++..+...++.+.++..|.+|+||++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 9888888877 788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccccEEEEeEEEECCCCC-------------CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 047171 309 PVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRP-------------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375 (1224)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-------------~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 375 (1224)
|.++... ...+...+|.|+|+||+|+||.+| +|++||+||||||||||+++||.|||+|++|+|+
T Consensus 449 P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 9876542 122225789999999999999875 5679999999999999999999999999999999
Q ss_pred ECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCC
Q 047171 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455 (1224)
Q Consensus 376 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 455 (1224)
+||+||+++++.++|++||+|.|||.||++||+|||+||.+++++|++.+||++|++|+||.++|+||||.|||+|.+||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecCh
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~ 535 (1224)
|||||||||||||++||.||||||||||||+++|..++++|++.++++|||+|||||+|+++||+|+|+++|+++|.|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCchHHHHHHHHHH
Q 047171 536 DVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 536 ~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
+||+++. +|.|++++++|..
T Consensus 687 ~eLl~~~---~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 687 DELLSKP---NGLYAKLVQRQLD 706 (716)
T ss_pred HHHhhCc---ccHHHHHHHHhcc
Confidence 9999983 5899999988764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-99 Score=929.75 Aligned_cols=547 Identities=43% Similarity=0.662 Sum_probs=509.6
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChHHH------HHH---HH------HHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISIS------IEA---VD------KVPEKGM 67 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~------~~~---~~------~~~~~~~ 67 (1224)
.+.+++++.+|. |.++++|++++++.++..|++.+++++++..+...+.+.+ +.. .. ..+++.+
T Consensus 651 s~~~i~k~~~pe-~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~ 729 (1228)
T KOG0055|consen 651 SFWRIFKLNKPE-WPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHY 729 (1228)
T ss_pred cHHHHHHhccch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999885 6678999999999999999999999999998864332211 110 00 1177899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047171 68 CWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLL 147 (1224)
Q Consensus 68 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1224)
++...++++..|+|...|+++++++.+|||+. ++ + |.|.+|+.+|...++..+.+.+..++.++..+++++++.|++
T Consensus 730 ~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~-~n-s-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~ 806 (1228)
T KOG0055|consen 730 FFGIAGEKLTKRLRSMMFRALLRQEVGWFDDP-EN-S-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY 806 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-cc-c-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999973 33 5 999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 047171 148 SWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIK 227 (1224)
Q Consensus 148 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~ 227 (1224)
+|+|+++++++.|++++..+...+.+.....+..+..++.+..+.|+++|||||++|+.|+++.+.|.+..++..+...|
T Consensus 807 ~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~ 886 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFK 886 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047171 228 QGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306 (1224)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 306 (1224)
.+.+.++..++. .+.++.+++.+|+|++++.+|.+++.+++.+++.+.+....+++.....+++.+|+.|+.+||+++|
T Consensus 887 ~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 887 RGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 999999999988 8999999999999999999999999999999888888888899989999999999999999999999
Q ss_pred cCCCCCCCcccccccccccccEEEEeEEEECCCCC-------------CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 047171 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRP-------------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373 (1224)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-------------~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 373 (1224)
++|+++.+++.+...++.+|+|+|+||+|+||.+| +|+++||||||||||||++.||.|||||++|.
T Consensus 967 r~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~ 1046 (1228)
T KOG0055|consen 967 RKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK 1046 (1228)
T ss_pred CCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 99977665433444566889999999999999876 45699999999999999999999999999999
Q ss_pred EEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCC
Q 047171 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453 (1224)
Q Consensus 374 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 453 (1224)
|.|||+|++++++++||++||.|.|||.||++||+|||+||.++++++|+.+||+.+++|+||.+||+||||.+||+|.+
T Consensus 1047 V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~Q 1126 (1228)
T KOG0055|consen 1047 VKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQ 1126 (1228)
T ss_pred EEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCc
Confidence 99999999999999999999999999999999999999999666899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeec
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g 533 (1224)
||||||||||||||++|||+||||||+|||||.++|+.+|++|++++.|||+|+|||||+++++||.|+|+++|+|+|+|
T Consensus 1127 LSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1127 LSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred CCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhccCCCchHHHHHHHHH
Q 047171 534 SHDVLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 534 ~~~~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
||+||+++ +|.|.++++.|.
T Consensus 1207 tH~~L~~~----~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1207 THDELLAK----RGIYFRLVQLQS 1226 (1228)
T ss_pred cHHHHHhC----CCchHHHhhhcc
Confidence 99999997 899999998774
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-93 Score=867.77 Aligned_cols=566 Identities=30% Similarity=0.456 Sum_probs=519.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAI 720 (1224)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 720 (1224)
+++....+.+..+.-.++.+++.++...+.|++...++|....... ........+.++++++...++.+++.+.+.+
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~ 220 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIAH 220 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555666666666777777777777776654322 2233345566777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 721 MGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAI 800 (1224)
Q Consensus 721 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 800 (1224)
.+.++...+-.++++|++++|+.||+ ++++|++++|+ +|.+.+++++.......+..+.++++.++++++++|.+++
T Consensus 221 ~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~l 297 (709)
T COG2274 221 LGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTL 297 (709)
T ss_pred HHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 67899999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 801 VMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 801 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
+.++.+|+.++..+...+..++..++..+..+...+++.|++.|++|||+.+.|.++..+|++...+..+..++......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
+...+..++..++.++++|+|++++..|.+|.|.++++.+....+..|+..+...+.+++....+.+|+.++++.++|.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
.+... ...++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++|
T Consensus 458 ~~~~~---~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 458 GDKTL---IHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred ccccc---ccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 33211 1234567899999999999855 3479999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1041 G~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
|+|+.+++++.+|++|+|||||++||+|||||||++++|++++|++++||+.+++|+||.++|.||||++||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhH
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|||||+||||+++||+||||||||||||++||+.|.+.|.+...+||+|+||||++++++||||+||++|||+|+|||+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHhh
Q 047171 1201 LLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1201 Ll~~~~~g~y~~l~~~q~ 1218 (1224)
|++. +|.|+++|++|.
T Consensus 694 ll~~--~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQ--GGLYARLYQQQE 709 (709)
T ss_pred HHHh--cChHHHHHhccC
Confidence 9997 899999998773
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-90 Score=844.19 Aligned_cols=541 Identities=32% Similarity=0.450 Sum_probs=490.1
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH----HH-------HHHHHHHHHHH
Q 047171 5 GGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV----DK-------VPEKGMCWTRT 72 (1224)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~----~~-------~~~~~~~~~~~ 72 (1224)
.++++...++++. +.-.++.+++..++....|++...++|.+... +.+.+.... .. .+++.++..+.
T Consensus 143 ~~f~~~~~~~~~~-l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 143 SWFIPLLFKYRRL-LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555443 33344445555555556667889999987654 222221100 00 06788888999
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047171 73 AERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLA 152 (1224)
Q Consensus 73 ~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (1224)
+.++..++-.++|+|++++|++||++ + ++|++++|+. |.++|+++++..+...+.++.+.++.+++|++++|.|+
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~---r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEK---R-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccC---C-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 5 9999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 153 LAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTK 232 (1224)
Q Consensus 153 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1224)
+++++.+|+++++..++.+.+++..++..+..++.++.+.|.++||++||+.+.|..+..+|++...++.+...+.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 047171 233 GLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVI 311 (1224)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 311 (1224)
.....+. ++..++.++++|+|++++.+|.+|+|.+++|.+.......|+..+...+..++++..+.+|+.++++.+++.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 8887777 888888999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 047171 312 NSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379 (1224)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 379 (1224)
+.+. .....++..|+|+|+||+|+|+.. ++++++||||+||||||||+|+|+|+|+|++|+|++||+
T Consensus 457 ~~~~-~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 457 EGDK-TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred cccc-ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 4322 123455678999999999999755 256799999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHH
Q 047171 380 KIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459 (1224)
Q Consensus 380 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 459 (1224)
|+.++++.++|++||||+||+.||+|||+|||++++|++++|++++||+.+++|+||.++|.||+|.+||+|.+||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHH
Q 047171 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 460 qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
|||+|||||+++|+||||||||||||+++|+.|.+.|.+..+|+|+|+||||++++++||+|+||++|+|+++|+|+||+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCchHHHHHHHH
Q 047171 540 QMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 540 ~~~~~~~~~y~~~~~~~ 556 (1224)
+. +|.|.+++..|
T Consensus 696 ~~----~g~y~~l~~~q 708 (709)
T COG2274 696 AQ----GGLYARLYQQQ 708 (709)
T ss_pred Hh----cChHHHHHhcc
Confidence 98 89999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-87 Score=829.13 Aligned_cols=562 Identities=35% Similarity=0.548 Sum_probs=505.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 640 LRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFA 719 (1224)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 719 (1224)
++++++.+ .+ .+.+++++.++........+++++.+++.... .......+..+++++.++..++.++..+...
T Consensus 5 ~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (567)
T COG1132 5 RRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA-----DLGELLELLLLLLLLALLGGVLRALQSYLGS 77 (567)
T ss_pred HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 55 66777777777777778888888888877651 1122333455566666678888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 720 IMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVA 799 (1224)
Q Consensus 720 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 799 (1224)
+.+.+...++|.++++++++.|++||+ ++++|++++|+++|++.++..+......+...++..++.+++++..+|.++
T Consensus 78 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (567)
T COG1132 78 RLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLA 155 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888999999999999999999999999 667999999999999999999999866677678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 047171 800 IVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFS 879 (1224)
Q Consensus 800 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1224)
+++++..|+.........++.++..++.++..++..+.+.|.+.|+++||+|+.++...+++.+..+...+...+..+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (567)
T COG1132 156 LILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777776688888888889999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 047171 880 GIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEI 959 (1224)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 959 (1224)
+....+..++..+..+++++++..++..+.++.|.+.+++.+......|+..+......+..+..+.+|++++++.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999986653
Q ss_pred CCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE
Q 047171 960 DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039 (1224)
Q Consensus 960 ~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1039 (1224)
...+.. .....+.|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|
T Consensus 316 ~~~~~~-----~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 316 EDPPDP-----LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cCCCCC-----CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 322111 1234567999999999973 457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1040 DERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1040 dG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
||+|++++++++||++|++|||||+||++||+|||.+|+++++|||+++||+.++++|||.++|+||||.|||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
|||||||||||++++|+|||||||||+||++||+.|++++++..++||+|+||||++++++||+|+||++|+|+|+|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHhhc
Q 047171 1200 SLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1200 eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
||+++ +|.|++||+.|..
T Consensus 549 eLl~~--~g~y~~l~~~~~~ 566 (567)
T COG1132 549 ELLAK--GGLYARLYQAQGG 566 (567)
T ss_pred HHHHc--CCHHHHHHHHhhc
Confidence 99997 8999999998864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-87 Score=832.31 Aligned_cols=570 Identities=21% Similarity=0.313 Sum_probs=492.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+++++++.++..++.+..|++++.+++.....+.. ......+..+++++.++..++.+++.+.
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777788888888888888999999999999999998865421111 1112334445566667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.++..++|.+++++++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6789999999999999999999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+.+++.....+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777777777777888888889999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL---------FQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRT 948 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 948 (1224)
.......+..++..+..+++.+++++.+. |.+++|.+ +.++.+......|+..+...+..+.++..+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666555555555554443 67776654 112233334567888899999999999999999
Q ss_pred HHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 949 IFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 949 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+.++++.+++..+... . ..+.+..+.|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|
T Consensus 324 i~~~l~~~~~~~~~~~-~--~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 324 LVTFLETPLAHPQQGE-K--ELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHcCCCcccCCCc-c--ccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999987653221111 0 011122357999999988763 3579999999999999999999999999999999999
Q ss_pred ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhccccccc
Q 047171 1029 FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT 1108 (1224)
Q Consensus 1029 l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt 1108 (1224)
+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++|+++|||+++|++.|++++||.++|+||||
T Consensus 399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 99 99999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 047171 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIK 1188 (1224)
Q Consensus 1109 ~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~ 1188 (1224)
.+||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcCCCchhHHHHHHhhcc
Q 047171 1189 NGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220 (1224)
Q Consensus 1189 ~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1220 (1224)
+|+|+|+|+|+||+++ +|.|+++++.|.+.
T Consensus 558 ~G~i~e~G~~~eL~~~--~~~y~~l~~~q~~~ 587 (588)
T PRK11174 558 DGQIVQQGDYAELSQA--GGLFATLLAHRQEE 587 (588)
T ss_pred CCeEeecCCHHHHHhc--chHHHHHHHHhhcC
Confidence 9999999999999986 89999999988764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=831.91 Aligned_cols=566 Identities=31% Similarity=0.483 Sum_probs=508.5
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 636 PSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQH 715 (1224)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 715 (1224)
...+++++++.++.++.+..++++.++..++....|++.+.+++........ ........+++++.++..++.+++.
T Consensus 146 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRG 222 (711)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888888889999999998876532111 1122234445556667788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 716 YNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVT 795 (1224)
Q Consensus 716 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1224)
+.+.+.+.++..++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++
T Consensus 223 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s 300 (711)
T TIGR00958 223 GSFNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHH
Q 047171 796 WRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQ 875 (1224)
Q Consensus 796 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 875 (1224)
|.+++++++..|+.+++.....++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.
T Consensus 301 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 380 (711)
T TIGR00958 301 PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888899999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047171 876 SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDR 955 (1224)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 955 (1224)
.........+..++..+..++++++|++++..|.+++|.++++..+......++..+...+.++.++..+.+|+.++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 460 (711)
T TIGR00958 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDR 460 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777777777777778888888999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 956 KSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
+++.+.... . .+++..+.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 461 ~~~~~~~~~--~--~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 461 KPNIPLTGT--L--APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred CCCCCCCCC--C--CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 655322111 0 122345689999999999876667899999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1036 ~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
+|++||+|+++++.+++|++|+||||||++|+|||||||.++.++++||+++++++.+++++++.++|+||||.+||+|.
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 616 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+||||||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||+++++.||+|+||++|+|+|+
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999 334578999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchhHHHH
Q 047171 1196 GTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1196 Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
|||+||+++ +|.|++|+
T Consensus 695 Gt~~eL~~~--~~~y~~lv 711 (711)
T TIGR00958 695 GTHKQLMED--QGCYKHLV 711 (711)
T ss_pred eCHHHHHhC--CCchHhcC
Confidence 999999986 78998874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-85 Score=751.60 Aligned_cols=553 Identities=27% Similarity=0.361 Sum_probs=506.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 655 LGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKML 734 (1224)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 734 (1224)
+..++.++.++....++++++..+..++... .......++..++++.++..++.+.+....+.++.++...+|++++
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~---~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQ---LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888888988888776532 1334455677788888899999999999999999999999999999
Q ss_pred HHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 735 EKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFY 814 (1224)
Q Consensus 735 ~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~ 814 (1224)
+++.+.+..|-. ..++|++.+.++..++.++.++..+++..+.+.+.....++.+++++|..++++++++|++.++++
T Consensus 81 ~~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 81 DKLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 815 SRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASI 894 (1224)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (1224)
...+..+...++.-....+.++++.+.+.|+.|+|.|+..+...+++.+...+.++.+++.-+..-...++..+++++++
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCC
Q 047171 895 TLTFWYAGRIMNQ-GLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEP 973 (1224)
Q Consensus 895 ~~~~~~~~~l~~~-g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1224)
+++..|.+..... |.++....+.++....-+..|+..+...++.-..+.++.+.+..+++.+.+..++..... ..+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~--~~~~ 316 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAE--VANE 316 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccc--cccC
Confidence 9999888887777 899988888888888888899999999999999999999999999987665433221101 1122
Q ss_pred CcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHh
Q 047171 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 974 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1053 (1224)
....++++|++|+||+. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||
T Consensus 317 ~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 317 PPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 23356677999999854 3799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++++||||+|++|+|||||||.+++++.+||+++++++.+++.+|+.. |+|+||.+||+|.+|||||+|||++|||+++
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
+++++|||||||+||.+||+.|.+.|.++.+++|||+||||++.+++||+|+|||+|+++|+|+|++|.++ +|.|++|
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~--~~~y~~l 551 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK--QGLYANL 551 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc--CcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred HHHhhc
Q 047171 1214 IKMQAS 1219 (1224)
Q Consensus 1214 ~~~q~~ 1219 (1224)
+.+|++
T Consensus 552 ~~~q~~ 557 (559)
T COG4988 552 LKQQEG 557 (559)
T ss_pred HHHHhc
Confidence 999876
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-85 Score=816.31 Aligned_cols=544 Identities=21% Similarity=0.248 Sum_probs=467.8
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC--CChHHHHHHH----H----H---HHHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGT--SDISISIEAV----D----K---VPEKGMCW 69 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~----~----~---~~~~~~~~ 69 (1224)
.++++++|.+++++ .+++++++.++..++.+..|+++++++|.+.. .+...+...+ . . .++..++.
T Consensus 9 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 9 LTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889988754 45677888888888888899999999997642 1222111110 0 0 05566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 047171 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSW 149 (1224)
Q Consensus 70 ~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1224)
.+.+.++..++|.++|+|++++|.++|++ . ++|++++|+++|++.+++++.+.++.++.+++.++++++++++++|
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~---~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQG---K-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINW 163 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhcc---C-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998 5 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 047171 150 RLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQG 229 (1224)
Q Consensus 150 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 229 (1224)
++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK11174 164 AAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVL 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 230 LTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLV---------FVAGICTILGGVGIMSALPNLSFISQATTAAT 299 (1224)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 299 (1224)
+..+...++. .+..+..+++++++++.+. |.+++|.+ ++++.+......|+..+...+..++++.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 322 (588)
T PRK11174 244 RMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAE 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665555 4444444444455555443 77777754 22224445567899999999999999999999
Q ss_pred HHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 300 RIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 300 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
|+.++++.+++.+... ....+....++|+|+||+|.|++. ++|+++|||||||||||||+++|+|+|
T Consensus 323 ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 323 SLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred HHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 9999998765322111 101111123579999999877532 367799999999999999999999999
Q ss_pred CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccccccc
Q 047171 369 PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448 (1224)
Q Consensus 369 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 448 (1224)
|++|+|++||+|+++++.+++|++|+||+|||+||++||+|||++|+|++++++++++|+.+++++|++++|+||||.+|
T Consensus 401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCce
Q 047171 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGR 528 (1224)
Q Consensus 449 ~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~ 528 (1224)
|+|.+|||||||||+||||+++||+|||||||||+||+++|+.|+++|+++.+++|+|+||||++++++||+|++|++|+
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 529 VIESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 529 i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
|+|+|+|+||+++ ++.|+++++.|..
T Consensus 561 i~e~G~~~eL~~~----~~~y~~l~~~q~~ 586 (588)
T PRK11174 561 IVQQGDYAELSQA----GGLFATLLAHRQE 586 (588)
T ss_pred EeecCCHHHHHhc----chHHHHHHHHhhc
Confidence 9999999999987 8899999987653
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-84 Score=818.16 Aligned_cols=562 Identities=25% Similarity=0.321 Sum_probs=499.0
Q ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRM-SAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 639 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
++++++. .++.++.+...++++++..++....|+++..+++....... ......+++.++++.++..++.+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 34555566666667777777777788888888876653211 1122334555666677788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.++..++|.+++++++++|++||+ +.++|++++|+. |++.+++.+...+...+......++.+++++.++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 678999999997 799999998887777777777777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+.+++.+...+..++..++..+..++..+.+.|+++|+++||+++.|+++.++|++..++..+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
...+...+..++..+..++++|+|++++..|.+|.|.++++..+......|+..+...+.++..+..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 958 EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
+.+... . .+.+..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 437 e~~~~~---~--~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 437 EVDEAK---T--DPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred ccccCc---C--CCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 432111 0 112234689999999999743 4579999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCC
Q 047171 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117 (1224)
Q Consensus 1038 ~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~L 1117 (1224)
++||+|+++++++++|++|+||||||++|+|||||||.++++ ++|+++++|++.++++++|.++|+||||.+||+|.+|
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 999999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
||||||||+||||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||+++++.||+|+||++|+|+|+|+
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGT 667 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999886 689999999999999999999999999999999
Q ss_pred hhHHhhcCCCchhHHHHHHh
Q 047171 1198 QSSLLSMGNGGAYYSLIKMQ 1217 (1224)
Q Consensus 1198 ~~eLl~~~~~g~y~~l~~~q 1217 (1224)
|+||+++ +|.|++|++.|
T Consensus 668 ~~~Ll~~--~~~y~~l~~~q 685 (686)
T TIGR03797 668 YDELMAR--EGLFAQLARRQ 685 (686)
T ss_pred HHHHHhC--CcHHHHHHHhc
Confidence 9999986 89999999866
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-84 Score=803.18 Aligned_cols=541 Identities=35% Similarity=0.544 Sum_probs=485.8
Q ss_pred cchHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHH--------HHHHH---HHHHHHHH
Q 047171 2 GTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIE--------AVDKV---PEKGMCWT 70 (1224)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~~~~~---~~~~~~~~ 70 (1224)
..+++++++.+ .+ .+++++++.++..++....|++++.++|.+... ...... .+... ++..++..
T Consensus 2 ~~~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (567)
T COG1132 2 SLLRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-LGELLELLLLLLLLALLGGVLRALQSYLGS 77 (567)
T ss_pred hhHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766 34 556777777777788888889999999987621 111110 00000 45566777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047171 71 RTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150 (1224)
Q Consensus 71 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1224)
+.+.++..++|.++|++++++|+++|++ . ++|++++|+++|++.++..+.+....+...++++++.+++++..+|.
T Consensus 78 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~---~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (567)
T COG1132 78 RLGQKIVADLRRDLFEKLLRLPLSFFDK---A-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR 153 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhCc---C-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7889999999999999999999999998 4 89999999999999999999998666666788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 151 LALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230 (1224)
Q Consensus 151 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 230 (1224)
+++++++..|++.++..++.++.++..++.++..+++++.+.|.++|+++||+|+.++.+.++|.+..++..+...+...
T Consensus 154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (567)
T COG1132 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047171 231 TKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVP 309 (1224)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 309 (1224)
..+...+.. .+..+...+++++|++++..+.+++|.+++++.+......|+..+...+..++++..+++|++++++.+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 313 (567)
T COG1132 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 888887776 7778888889999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCcccccccccccccEEEEeEEEECCC-C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPT-R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
++.+.+. ......++|+|+||+|+|++ . ++++++||||||||||||++++|+|+|+|++|+|++||
T Consensus 314 ~~~~~~~---~~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 314 EVEDPPD---PLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred cccCCCC---CCCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 6443321 12334578999999999984 2 36779999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++|++|+|||+||++||+|||.+|+|++++||+++||+.+++||||+++|+||||.+||+|.+|||||
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ 470 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||||||||+++||||||||||||+||++||+.|++++.++.++||+|+||||++++++||+|+||++|+|+|.|+|+||
T Consensus 471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~~~~ 557 (1224)
+++ +|.|+++|+.|.
T Consensus 551 l~~----~g~y~~l~~~~~ 565 (567)
T COG1132 551 LAK----GGLYARLYQAQG 565 (567)
T ss_pred HHc----CCHHHHHHHHhh
Confidence 998 899999998775
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-83 Score=817.07 Aligned_cols=564 Identities=23% Similarity=0.324 Sum_probs=501.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+...++++++..++..+.|+++..+++....... ......+++.++++.++..++.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777777777777777788888889999998887653221 1112233444555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
..+.+.++..++|.+++++++++|+.||+ +.++|++++|++ |.+.+.+.+.......+..++.+++.++++++++|.
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 678999999998 899999988887777777777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++.+|+.+++.+...+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|.+......+...+...
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
.......+..++..+..++++|+|++++..|.+|+|.++++..+......|+..+...+.++..+..+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 958 EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
+.+...... ..++..|.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 457 e~~~~~~~~---~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 457 EFINKKKRT---ELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred ccccccccc---CCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 532211100 11234578999999999973 3579999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccC-CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1038 ~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~-~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
++||+|+++++++++|++|+||||||+||+|||||||.++ +++++|+++++|++.++++++|.++|+||||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999998 578899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
|||||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHH
Q 047171 1197 TQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~ 1215 (1224)
+|+||+++ +|.|++||+
T Consensus 691 ~~~~L~~~--~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR--NGFYASLIH 707 (708)
T ss_pred CHHHHHhc--CCcHHHHhh
Confidence 99999986 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-83 Score=790.68 Aligned_cols=566 Identities=23% Similarity=0.326 Sum_probs=491.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 640 LRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDS-KLKSETRLYCLIFLGLAFLTLIANLIQHYNF 718 (1224)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 718 (1224)
++++++.++.++.+++++++.++..++....+++++.+++........ ........+...+++++++..++.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777788888887777778888888888755322110 0000111123344556677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 719 AIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRV 798 (1224)
Q Consensus 719 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 798 (1224)
...+.++..++|.++|++++++|+.+|+ +.++|++++|+++|++.++.++...+..++..++.++++++++++++|.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 799 AIVMIAVQPLNIGC-FYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 799 ~lv~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
++++++++|+..++ .+...+..++..++.++..++..+.+.|.+.|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877766543 45556666777778888889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMS-TGKNIADAGSMTSDIAKGSSAIRTIFTILDRK 956 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 956 (1224)
..+....+..++..+..++++++|++++ .|.++.|.+++++.+... ...++..+...+..+.++..+.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888888889999884 788999998887665433 44577778888999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
++.+..+. . ...+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 322 ~~~~~~~~--~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 322 PEVTFPTT--S--TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCcc--c--CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 54321111 0 111234679999999999743 346999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
|++||+|+++++.+++|++|+||||||++|++||+|||.+++++.+|++++++++.+++++++.+ |+||||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
||||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|++|++|+++|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHH
Q 047171 1197 TQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~~ 1216 (1224)
+|+||+++ +|.|++||+.
T Consensus 556 ~~~~l~~~--~g~y~~l~~~ 573 (574)
T PRK11160 556 THQELLAQ--QGRYYQLKQR 573 (574)
T ss_pred CHHHHHhc--CcHHHHHHhh
Confidence 99999987 8999999863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-83 Score=813.54 Aligned_cols=566 Identities=25% Similarity=0.332 Sum_probs=500.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.++.+++..++.++.+...++++++..++..+.|++...+++........ .....+.+.++++.++..++.+++.+.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666777777777888888888765532211 112234445556667778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.++..++|.+++++++++|++||+ +.++|++++|+++| +.+++++...+...+..++.+++.+++++.++|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 67899999999988 6799998888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++.+|+.+++.+...+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888877888888888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
...+...+..++..+..++++++|++++..|.+|.|.++++..+......|+..+...+.++..+..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCC-C-CCCC-CCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC
Q 047171 958 EIDPEDPKA-S-EDIE-EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034 (1224)
Q Consensus 958 ~~~~~~~~~-~-~~~~-~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1034 (1224)
+........ . ...+ ++..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 532211000 0 0011 2235789999999999853 4579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCC
Q 047171 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114 (1224)
Q Consensus 1035 G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G 1114 (1224)
|+|.+||+|+++++.+++|++|+||||||++|+|||||||.+++++++|+++++|++.++++++|.++|+||||.+||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive 1194 (1224)
.+|||||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||+++++.||+|+||++|+|+|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchhHHHH
Q 047171 1195 QGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1195 ~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
.|+|+||+++ +|.|++|+
T Consensus 692 ~G~~~~Ll~~--~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV--GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc--CCcHHHHh
Confidence 9999999986 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-83 Score=847.66 Aligned_cols=543 Identities=29% Similarity=0.406 Sum_probs=461.8
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-hH------HHHHHHH---H---HHHHHHHHHH
Q 047171 5 GGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD-IS------ISIEAVD---K---VPEKGMCWTR 71 (1224)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~~---~---~~~~~~~~~~ 71 (1224)
.+++++.+++++ .++++++++++.+++.|++|+++++++|.+.... .. .++..+. . .+++.++..+
T Consensus 814 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~ 892 (1466)
T PTZ00265 814 RIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNV 892 (1466)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655544 3677888889999999999999999999764321 10 0110110 0 1677888899
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.++++..++|.++|++++++|++|||+ +.+ ++|++++|+++|++.+++++...+..++..+++++++++++++++|.+
T Consensus 893 ~~~~~~~~lR~~lf~~ll~~~~~~fd~-~~~-~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l 970 (1466)
T PTZ00265 893 IGEKVEKTMKRRLFENILYQEISFFDQ-DKH-APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIV 970 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999984 113 899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLG-AQ-----------------GKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKR 213 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~ 213 (1224)
++++++++|+ +...+.++.+... ++ .++..++.+..++|.++||++||+|+.|+.+.++
T Consensus 971 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~ 1047 (1466)
T PTZ00265 971 AAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNL 1047 (1466)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHH
Confidence 8776544333 3344444333211 11 2344677899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 214 FSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFIS 292 (1224)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1224)
|.+..++..+...+.....++..++. .+.+++.++++|+|++++..|.+++|+++++++++.+...++..+...+..++
T Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~ 1127 (1466)
T PTZ00265 1048 IEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSE 1127 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888777 67777788899999999999999999999988776666667788888899999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcccccc---cccccccEEEEeEEEECCCCC-------------CCCEEEEEcCCCCcH
Q 047171 293 QATTAATRIFEMIDRVPVINSEDEIGKT---LAYLRGEIEFKDVDFSYPTRP-------------DTPTIGLVGSSGSGK 356 (1224)
Q Consensus 293 ~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~-------------~~~~~~ivG~sGsGK 356 (1224)
++.++++|++++++.+++++..+..+.. .+...|.|+|+||+|+||+++ +++++||||||||||
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGK 1207 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGK 1207 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCH
Confidence 9999999999999987654321111111 123457899999999997432 456999999999999
Q ss_pred HHHHHHHhcCCCC------------------------------------------------------CCcEEEECCEecC
Q 047171 357 STVISLLERFYDP------------------------------------------------------VKGNILLDGHKIK 382 (1224)
Q Consensus 357 STl~~ll~~~~~~------------------------------------------------------~~G~i~~~g~~~~ 382 (1224)
|||++||+|+|+| ++|+|++||+|++
T Consensus 1208 STl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~ 1287 (1466)
T PTZ00265 1208 STVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDIC 1287 (1466)
T ss_pred HHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHH
Confidence 9999999999999 6999999999999
Q ss_pred CCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 383 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
+++.+++|++||||+|||+||++||+|||+||+|+++++++++||+.+++|+||.+||+||||.|||+|.+|||||||||
T Consensus 1288 ~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1288 DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred hCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeC----ceEE-eecCh
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQS----GRVI-ESGSH 535 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~----G~i~-~~g~~ 535 (1224)
||||||+++|+||||||||||||+++|+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |+|+|
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999999999999999999874 69999999999999999999999999 9955 89999
Q ss_pred HHHHhhccCCCchHHHHHHHH
Q 047171 536 DVLMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 536 ~~l~~~~~~~~~~y~~~~~~~ 556 (1224)
+||+++. +|.|+++++.|
T Consensus 1448 ~eLl~~~---~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1448 EELLSVQ---DGVYKKYVKLA 1465 (1466)
T ss_pred HHHHhcC---CChHHHHHhhc
Confidence 9999731 79999998765
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-82 Score=787.80 Aligned_cols=568 Identities=30% Similarity=0.474 Sum_probs=497.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNF 718 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 718 (1224)
++.++++.++.++.+++.++..++..++....++++..+++........ .....+.+.++++.++..++.++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 89 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCI 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555566677777777655432111 1111223334456677788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 719 AIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRV 798 (1224)
Q Consensus 719 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 798 (1224)
.+.+.++...+|.++++++++.|.++|+ +...|++++|+++|++.+...+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 90 SWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHH
Q 047171 799 AIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWF 878 (1224)
Q Consensus 799 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1224)
++++++++|+.+++.+...+..++..++.++..++....+.|.++|+++||+|+.++.+.++|++..+...+...+....
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888777777778878888888889999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047171 879 SGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSE 958 (1224)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 958 (1224)
......+..++..+..++++++|++++..|.+++|++++++.+......|+..+...+..+..+..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888888888888888889999999999999999999888888888899999999999999999999999999876544
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEE
Q 047171 959 IDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038 (1224)
Q Consensus 959 ~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1038 (1224)
.+... . ..++..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 328 ~~~~~-~----~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 328 KDEGK-R----VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CCCCC-c----CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 22111 0 112234579999999999753 45799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCC
Q 047171 1039 VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117 (1224)
Q Consensus 1039 idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~L 1117 (1224)
+||+|+++++.+++|++|+||||||++|++||||||.+++++ ++|++++++++.+++++++.++|+||||.+||+|.+|
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 999999999999999999999999999999999999998654 7999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
||||||||+||||++++|+|||||||||+||++||+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCCCchhHHHHHHhhc
Q 047171 1198 QSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1198 ~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|++|+++ ++.|++|++.|.+
T Consensus 562 ~~~l~~~--~~~y~~l~~~~~~ 581 (582)
T PRK11176 562 HAELLAQ--NGVYAQLHKMQFG 581 (582)
T ss_pred HHHHHhC--CChHHHHHHHHhc
Confidence 9999987 7999999987754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-82 Score=801.31 Aligned_cols=536 Identities=36% Similarity=0.509 Sum_probs=475.7
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH----H----H---HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV----D----K---VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~----~----~---~~~~~~~~~~ 71 (1224)
+++++++.++.+ ..+++++++.++.+++....|+++++++|.+... +...+...+ . . .+++.+++.+
T Consensus 149 ~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (711)
T TIGR00958 149 LFRLLGLSGRDW-PWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227 (711)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887654 3556777777888888888899999999987532 222221110 0 0 0456677788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|.++|++++++|.+||++ . ++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|++
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~~---~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFDE---N-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcC---C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999998 5 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+...... .+..+..++++++|++++.+|.+++|.+++++.|......|+..+...+..++++.++.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66655544 55556667788899999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCCC-------------CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTRP-------------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~-------------~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 377 (1224)
.+... ...+.+..+.|+|+||+|+||+++ +|+++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 43221 112223457899999999998532 567999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH
Q 047171 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457 (1224)
Q Consensus 378 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 457 (1224)
|+|+++++.+++|++|+||+|||++|++||+|||++|.+++++++++++++.++++++++++|+|+||.+||+|.+||||
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHH
Q 047171 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 458 q~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||||||||||++++|+|||||||||+||+++|+.+++ ....+++|+|+||||+++++.||+|+||++|+|+|+|+|+|
T Consensus 622 QkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 9999999999999999999999999999999999998 33457899999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHH
Q 047171 538 LMQMNNGEGGAYSKM 552 (1224)
Q Consensus 538 l~~~~~~~~~~y~~~ 552 (1224)
|+++ ++.|+++
T Consensus 700 L~~~----~~~y~~l 710 (711)
T TIGR00958 700 LMED----QGCYKHL 710 (711)
T ss_pred HHhC----CCchHhc
Confidence 9987 7788765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-82 Score=800.93 Aligned_cols=553 Identities=24% Similarity=0.359 Sum_probs=491.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAI 720 (1224)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 720 (1224)
+++++.++.++.+...++++++..++....|+++..+++........ .....+.++++++.++..++.+++.++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666777777777778888888888765432111 112223344455566678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 721 MGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAI 800 (1224)
Q Consensus 721 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 800 (1224)
.+.++..++|.+++++++++|+.| + +.++|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 289 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVW 289 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999997 5 56899999999 8999999998888777777777777778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 801 VMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 801 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
+.++.+|+.+++.+...+..++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+......
T Consensus 290 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 290 VPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
....+..++..++.++++++|++++..|.+|+|.++++..+......|+..+...+.++..+..+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
.... .. ..++..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+|
T Consensus 450 ~~~~-~~--~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 450 EGTR-FL--HRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred CCCC-CC--CCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 2111 00 112235689999999999743 4579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1041 G~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
|+|+++++++++|++|+||||||++|+|||+|||.+++++++++++++|++.++++++|.++|+||||.+||+|.+||||
T Consensus 526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred CEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhH
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|+|+|+|
T Consensus 606 QrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred Hhhc
Q 047171 1201 LLSM 1204 (1224)
Q Consensus 1201 Ll~~ 1204 (1224)
|+++
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 9975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=783.31 Aligned_cols=567 Identities=25% Similarity=0.342 Sum_probs=484.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+++.+++.++..++....|++++.+++.......... .....++++++++.++..++.++..+.
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLL 88 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777788888888889999988886543211111 111112334555556677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.+...++|.++++++++.|.+||+ +.++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 89 FNRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6789999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+.++......+..+...++..+..++...++.|.++|+++||+|+.++.+.+++.+..+...+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777777677777777777777788889999999999999999999999999999988888777766665
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047171 878 FSGIG-LFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRK 956 (1224)
Q Consensus 878 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 956 (1224)
..+.. ..+..++..+...+++++++. +..|.++++.++++..+......|+..+...+..+..+..+.+|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55433 333334333333333333333 5789999999999999998999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
++.... . ..+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 326 ~~~~~~--~----~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 326 RQQYGN--D----DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred CccCCC--C----ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 432111 0 11123467999999999974 356999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
|.+||.|+++++++.+|++|+||||||++|+|||||||.+++ +++|++++++++.+++++++.++|+||||.+||+|.+
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~ 476 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNN 476 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 999999999999999999999999999999999999999997 6899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
|||||||||+||||++++|+|||||||||+||++|++.|.+.|++..++||+|+||||+++++.||+|++|++|+++|.|
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHHhhc
Q 047171 1197 TQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
||+||+++ ++.|++|++.|..
T Consensus 557 ~~~~L~~~--~~~y~~l~~~~~~ 577 (592)
T PRK10790 557 THQQLLAA--QGRYWQMYQLQLA 577 (592)
T ss_pred CHHHHHhC--CCHHHHHHHHHhh
Confidence 99999986 7999999998754
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-85 Score=716.08 Aligned_cols=503 Identities=28% Similarity=0.409 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 707 TLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASL 786 (1224)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~ 786 (1224)
+.+++-+++|++..+.+...+++-.++|+|+..+++.|.- ...+|+++.-+.+..+.+. ++...+..+...++-+..
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 4667777888888899999999999999999999999998 4568998888877777666 555555555555555555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHh
Q 047171 787 AYTLS-LLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETM 865 (1224)
Q Consensus 787 ~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~ 865 (1224)
+++.. ..++|+.+++++++..+.+...........+.++++..+..+......+++-+..|||-|++|++..++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 54443 34688888887777666655444333344455666666777778888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 866 KGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSA 945 (1224)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 945 (1224)
..+++..++...--.+.......+..++.+..-.+.++++-.+..+.|+++.+..+++...+|+..+...+..+++...-
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99998877766555555555555555555555555667777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHH
Q 047171 946 IRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGL 1025 (1224)
Q Consensus 946 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~l 1025 (1224)
++++++++++++|+.+.+ .. ++....+|.|+|+||+|.|+ |++|||+||||+++||+++|+|||||+||||++++
T Consensus 509 mEnmfdllkee~eVvd~P-~a--~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRl 583 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLP-GA--PPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRL 583 (790)
T ss_pred HHHHHHHhhcCchhhcCC-CC--CCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHH
Confidence 999999998877654321 11 12233578999999999996 56789999999999999999999999999999999
Q ss_pred HhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccc
Q 047171 1026 IERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDG 1105 (1224)
Q Consensus 1026 L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~g 1105 (1224)
|+||||.++|+|.|||+||+++..++||++||+||||..||++||.+||.|++|.+++||+.+|++.|++||-|.++|+|
T Consensus 584 LfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPeg 663 (790)
T KOG0056|consen 584 LFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEG 663 (790)
T ss_pred HHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEE
Q 047171 1106 YDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV 1185 (1224)
Q Consensus 1106 ldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~ 1185 (1224)
|+|.|||+|..||||||||+||||+++++|.|++|||||||||..||+.||.+|.++++++|.|+|||||+|+.+||.|+
T Consensus 664 Y~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~IL 743 (790)
T KOG0056|consen 664 YNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLIL 743 (790)
T ss_pred hhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhcCCCchhHHHHHHhh
Q 047171 1186 VIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1186 vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
|+++|+|+|.|+|+||+++ .+|.|++||+.|+
T Consensus 744 vi~~G~IvErG~HeeLl~r-dgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 744 VISNGRIVERGRHEELLKR-DGGAYADMWQAQQ 775 (790)
T ss_pred EEeCCeEeecCcHHHHHhc-cCCcHHHHHHHHH
Confidence 9999999999999999997 5899999997654
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=776.48 Aligned_cols=541 Identities=23% Similarity=0.324 Sum_probs=472.8
Q ss_pred CcchHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-CCC-----hHHHHHH--H-H----HH---HH
Q 047171 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELG-TSD-----ISISIEA--V-D----KV---PE 64 (1224)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~-----~~~~~~~--~-~----~~---~~ 64 (1224)
|+.++++++|.+++++ .++++++++++..++....|++++.+||... ... ....+.. + . .. ++
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (574)
T PRK11160 1 MRALLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYG 79 (574)
T ss_pred CchhHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4446678888877654 4567777777777777888899999999643 221 1111000 0 0 00 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047171 65 KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVA 144 (1224)
Q Consensus 65 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1224)
..++.++.+.++..++|.++|+|++++|.++|++ . ++|++++|+++|++.+++++.+.++.++.++++++++++++
T Consensus 80 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~---~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l 155 (574)
T PRK11160 80 ERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR---Y-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGL 155 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc---C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999999999998 5 99999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHH
Q 047171 145 FLLSWRLALAALPFSLLFIV-PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223 (1224)
Q Consensus 145 ~~~~~~l~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~ 223 (1224)
+++||++++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+
T Consensus 156 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (574)
T PRK11160 156 SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 99999999998888887655 45677888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 224 LGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILG-GVGIMSALPNLSFISQATTAATRI 301 (1224)
Q Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~ri 301 (1224)
...+..+..+...++. ++..++.++++++|+++ .+|.+++|.+++++.+.... ..|+..+...+..++++.++++|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri 314 (574)
T PRK11160 236 AQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRI 314 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888777766 66666777788999988 47899999999987776443 457777777888999999999999
Q ss_pred HHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 302 FEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
.++++.+++.+.+.. .......+.|+|+||+|+|++. ++++++|||||||||||||+++|+|+|+|
T Consensus 315 ~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p 392 (574)
T PRK11160 315 NEITEQKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 392 (574)
T ss_pred HHHHhCCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 999987765332211 1112234679999999999752 25679999999999999999999999999
Q ss_pred CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccC
Q 047171 370 VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449 (1224)
Q Consensus 370 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 449 (1224)
++|+|++||+|+++++.+++|++|+||+|||++|++||+|||++++|++++++++++++.+++++++++ |+||||.+||
T Consensus 393 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge 471 (574)
T PRK11160 393 QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGE 471 (574)
T ss_pred CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcC
Confidence 999999999999999999999999999999999999999999999998999999999999999999999 9999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceE
Q 047171 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
+|.+|||||||||+||||++++|+|||||||||+||+++|+.+++.+.+..+++|+|+||||+++++.||+|++|++|++
T Consensus 472 ~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i 551 (574)
T PRK11160 472 GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQI 551 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EeecChHHHHhhccCCCchHHHHHH
Q 047171 530 IESGSHDVLMQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 530 ~~~g~~~~l~~~~~~~~~~y~~~~~ 554 (1224)
++.|+|+||+++ +|.|+++|+
T Consensus 552 ~~~g~~~~l~~~----~g~y~~l~~ 572 (574)
T PRK11160 552 IEQGTHQELLAQ----QGRYYQLKQ 572 (574)
T ss_pred EEeCCHHHHHhc----CcHHHHHHh
Confidence 999999999998 899999886
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-81 Score=791.37 Aligned_cols=537 Identities=27% Similarity=0.340 Sum_probs=474.6
Q ss_pred hHHHHhh-ccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHHH--------H---HHHHHHHHH
Q 047171 4 KGGLFRY-ADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAVD--------K---VPEKGMCWT 70 (1224)
Q Consensus 4 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~--------~---~~~~~~~~~ 70 (1224)
+++++++ .++++ ..++..++++++..++....|++++.++|.+... +...++..+. . .+++.++..
T Consensus 123 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (686)
T TIGR03797 123 LRDLLRFALRGAR-RDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVL 201 (686)
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665 34443 3445666677777777777888999999987533 2222211100 0 055677778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047171 71 RTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150 (1224)
Q Consensus 71 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1224)
+.+.++..++|.++|+|++++|++||++ . ++|++++|++ |++.+++++...+...+.++..+++.++++++++|.
T Consensus 202 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~---~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 202 RLETRMDASLQAAVWDRLLRLPVSFFRQ---Y-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCC---C-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998 5 9999999997 899999999998888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 151 LALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230 (1224)
Q Consensus 151 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 230 (1224)
+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047171 231 TKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVP 309 (1224)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 309 (1224)
...+...+. ++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 887776666 6666777888999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 047171 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377 (1224)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 377 (1224)
+.+... .......+.|+|+||+|+|++. ++|+++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 437 e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 513 (686)
T TIGR03797 437 EVDEAK---TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513 (686)
T ss_pred ccccCc---CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 432211 1122335689999999999632 2577999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH
Q 047171 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457 (1224)
Q Consensus 378 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 457 (1224)
|+|+++++.+++|++||||+|||++|++||+|||++|+| +++++++++++.++++++++++|+||||.+||+|.+||||
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 999999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHH
Q 047171 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 458 q~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~ 537 (1224)
|||||+||||++++|+|||||||||+||+++|+.+.+.+++. ++|+|+||||+++++.||+|+||++|+|++.|+|+|
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHHHH
Q 047171 538 LMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 538 l~~~~~~~~~~y~~~~~~~ 556 (1224)
|+++ ++.|+++++.|
T Consensus 671 Ll~~----~~~y~~l~~~q 685 (686)
T TIGR03797 671 LMAR----EGLFAQLARRQ 685 (686)
T ss_pred HHhC----CcHHHHHHHhc
Confidence 9987 88999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-81 Score=788.93 Aligned_cols=567 Identities=25% Similarity=0.382 Sum_probs=501.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNF 718 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 718 (1224)
++++++..++.++.+...++++++..++..+.|+++..+++....... ......+++.++++.++..++.+++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666666677777788888888886653211 11223344555666777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 719 AIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRV 798 (1224)
Q Consensus 719 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 798 (1224)
...+.++..++|.+++++++++|++||+ +.++|++++|+ +|++.+++++...+...+..++..++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 77899999999 79999999988877777767776666788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHH
Q 047171 799 AIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWF 878 (1224)
Q Consensus 799 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1224)
++++++++|+.+++.+...+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777777777777788888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047171 879 SGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSE 958 (1224)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 958 (1224)
......+..++..+..++++|+|++++..|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEE
Q 047171 959 IDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038 (1224)
Q Consensus 959 ~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1038 (1224)
...... . ..+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 441 ~~~~~~--~--~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 441 PRSAGL--A--ALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred ccCCCC--C--CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 322110 0 112234689999999999743 35699999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCC
Q 047171 1039 VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118 (1224)
Q Consensus 1039 idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1118 (1224)
+||+|+++++.+++|++++||||||++|++||+|||.++++++++++++++++.+++++++.++|+||||.+|++|.+||
T Consensus 516 idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred ECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||||||+||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHHHHhh
Q 047171 1199 SSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1199 ~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+||+++ +|.|++|++.|.
T Consensus 676 ~~l~~~--~~~y~~l~~~~~ 693 (694)
T TIGR01846 676 EELLAL--QGLYARLWQQQS 693 (694)
T ss_pred HHHHHc--CChHHHHHHhhc
Confidence 999986 799999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-81 Score=703.11 Aligned_cols=505 Identities=24% Similarity=0.356 Sum_probs=444.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 047171 701 LGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQV 780 (1224)
Q Consensus 701 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~ 780 (1224)
=++++...+..++.......+..++...+|.++|+++...+..-.. .-.+|+++||+..|++.+++.+-..+.+++..
T Consensus 65 R~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a 142 (573)
T COG4987 65 RGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVA 142 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHH
Confidence 3567778888888888889999999999999999999988777666 55699999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHH
Q 047171 781 FFSASLAYTLSLLVTWRVAIVMIAVQ-PLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILD 859 (1224)
Q Consensus 781 ~~~~~~~~~~~~~~~~~l~lv~l~~~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~ 859 (1224)
++.+.+..+...+++|.+++.+...+ .+.+++.+...++.++..++.+...+...+++.|.+.|....+.||+++.+.+
T Consensus 143 ~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~ 222 (573)
T COG4987 143 LVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT 222 (573)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHH
Confidence 88877777777777887776554443 44455566777777888888888999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 047171 860 LFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAG-SMTSD 938 (1224)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 938 (1224)
.+.+..+.+.+...+...+.++..++..++..+..+..+.+.+-....|..+......+.+.++....++..+. ..+.+
T Consensus 223 ~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 223 ALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999999999999999999999999998888887744444444455666664444444454455555555555 66788
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCC
Q 047171 939 IAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSG 1018 (1224)
Q Consensus 939 ~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsG 1018 (1224)
..+...+++|+.++.+.+++...+.++ .+.+. ..++++||+|+||++ ++++|+|+||++++||||||+||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~----~~~~~-~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsG 376 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQ----TATTG-QALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSG 376 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCccc----cCCcc-ceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCC
Confidence 999999999999999887765443111 11111 279999999999865 567999999999999999999999999
Q ss_pred hHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHH
Q 047171 1019 KSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEF 1098 (1224)
Q Consensus 1019 KSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~ 1098 (1224)
|||++++|.|.|+|++|+|..+|.+++.++.+.+|+.|++++|.+++|++|+|+||.+++|++||||+|+++++++++++
T Consensus 377 KSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l 456 (573)
T COG4987 377 KSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456 (573)
T ss_pred HHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1099 ISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1099 I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
+++.|+||+|++||+|.+|||||||||+|||+||+|++++||||||.+||++||+.|.+.|.+..+|||+|+||||+..+
T Consensus 457 ~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~l 536 (573)
T COG4987 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL 536 (573)
T ss_pred HHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1179 QKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1179 ~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
++||||+||++|+++|+|+|++|+++ +|.|++|++
T Consensus 537 e~~drIivl~~Gkiie~G~~~~Ll~~--~g~~~~l~q 571 (573)
T COG4987 537 ERMDRIIVLDNGKIIEEGTHAELLAN--NGRYKRLYQ 571 (573)
T ss_pred hhcCEEEEEECCeeeecCCHHhhhcc--ccHHHHHhc
Confidence 99999999999999999999999996 899999985
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-81 Score=792.81 Aligned_cols=539 Identities=26% Similarity=0.334 Sum_probs=475.3
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-hHHHHHH----HHH-------HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD-ISISIEA----VDK-------VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~----~~~-------~~~~~~~~~~ 71 (1224)
+++++++.+++++ .++..++++++..++....|++++.++|.+.... ...+... +.. .+++.++..+
T Consensus 144 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 144 LLKFIPLITRQKK-LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766544 3455666666777777778899999999875432 2111110 000 0556677888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|.++|+|++++|++||++ . ++|++++|++ |++.+++++...+...+.+++++++.++++++++|++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~---~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFST---R-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL 297 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC---C-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999998 5 9999999998 9999999999888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+...+..+...+..+.
T Consensus 298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 377 (708)
T TIGR01193 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA 377 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+....+. ++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77666555 55566677888999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 379 (1224)
.+... .....+...+.|+|+||+|+|++. ++|+++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 458 ~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 458 FINKK-KRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred ccccc-cccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 33221 101122345789999999999742 256799999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 380 KIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 380 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
|+++++.+++|++||||+|||+||++||+|||.+| .|++++++++++|+.+++++++.++|+||||.+||+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999999 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
||||+||||++++|+|||||||||+||+++|+.+.+.|.+. +++|+|+||||+++++.||+|++|++|++++.|+|+||
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~ 554 (1224)
+++ ++.|+++++
T Consensus 696 ~~~----~~~y~~l~~ 707 (708)
T TIGR01193 696 LDR----NGFYASLIH 707 (708)
T ss_pred Hhc----CCcHHHHhh
Confidence 987 788988874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-81 Score=706.04 Aligned_cols=550 Identities=27% Similarity=0.406 Sum_probs=463.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 659 GSAGSGAIYPSYAYCLGSVVSAYFIKDD-SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKI 737 (1224)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 737 (1224)
+.+.+.......|.++...++..-..+. ..........+..|.++.+.+.+++.++.+.+.++.+++.+..-.++|++.
T Consensus 38 ~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~ 117 (591)
T KOG0057|consen 38 LLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHL 117 (591)
T ss_pred HHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455566677777776665421111 111222334566788889999999999999999999999999999999999
Q ss_pred HcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 738 FTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYT-LSLLVTWRVAIVMIAVQPLNIGCFYSR 816 (1224)
Q Consensus 738 l~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~lv~l~~~pl~~~~~~~~ 816 (1224)
+.++.+||. +..+|++.+.+.+....+...+...+..++..++.+..... +..-++...+++.+..+.....+.+..
T Consensus 118 ~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~ 195 (591)
T KOG0057|consen 118 MSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVV 195 (591)
T ss_pred HhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEee
Confidence 999999999 56799999999999999988888877777777665555443 333345555555555555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 817 SVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITL 896 (1224)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (1224)
.......+++..++.+...+.+.|++.+..+||.||.|++..++|...+..+.+...+.....++..+....+.....+.
T Consensus 196 t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~ 275 (591)
T KOG0057|consen 196 TRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTF 275 (591)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555567777888888999999999999999999999999999999999999988888777777776666666666666
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcc
Q 047171 897 TFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKG 976 (1224)
Q Consensus 897 ~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g 976 (1224)
+.+.+..-+..+.++.+++............|+..+...+.++.++..-++.++...+....+... . .+....++
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~----~-~~i~~~~~ 350 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA----A-LPIELFGG 350 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc----c-CCcccCCC
Confidence 666777767888999999998888888888999999999999999888888877665432221111 0 01223456
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+|+||+|.|+ |++++|+++||+|++||||||||+|||||||++++|+||++ ++|+|+|||+|+++++++.+|+.|
T Consensus 351 ~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 799999999997 45679999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
||||||..||++||.+||.||++.+++||+.++|+.+++||.|.++|+||+|.|||+|..||||||||++||||++++|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
|+++|||||+||.+||+.+.+.+.....+||+|+|+||++++++||+|++|++|++.|+|||+||++. .+.|+++|..
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~--s~~~~~~w~~ 585 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP--SELYADLWTT 585 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh--hhHHHHHhcc
Confidence 99999999999999999999999998899999999999999999999999999999999999999995 8999999988
Q ss_pred hhcc
Q 047171 1217 QASR 1220 (1224)
Q Consensus 1217 q~~~ 1220 (1224)
|...
T Consensus 586 ~~~~ 589 (591)
T KOG0057|consen 586 QTSS 589 (591)
T ss_pred cccc
Confidence 7654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-80 Score=768.94 Aligned_cols=565 Identities=32% Similarity=0.501 Sum_probs=510.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAI 720 (1224)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 720 (1224)
.++++.++.++.+++++++.++.+++.+..++++..+++..+.... ......+..+++++.++..++.++..+....
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777788888888888888888888888875543211 1122233445667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 721 MGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAI 800 (1224)
Q Consensus 721 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 800 (1224)
.+.++...+|..+++++++.|.++|+ +.+.|++.+|+++|++.++..+...+..++..++.+++.++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998 6779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 801 VMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 801 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
+++++.|+.+++.+...+..+...++..+..++..+.+.|.++|+++||+++.++.+.+++++..+...+...+.....+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888899999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
....+..++..+..++++++|++++..|.+++|.++++..++.....|+..+...+..+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999998655432
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
... . ...+..+.|+++||+|+|+++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++|
T Consensus 319 ~~~--~---~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 319 TGT--R---AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred CCC--C---CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 111 0 111234679999999999754 4579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1041 G~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
|+|+++++.+++|++++||||+|++|+|||||||.++++ +.++++++++++.+++++++.++|+||||.+|++|.+|||
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSg 472 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCH
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
|||||||||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHhh
Q 047171 1200 SLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1200 eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+|+++ ++.|++++..+.
T Consensus 553 ~l~~~--~~~~~~~~~~~~ 569 (571)
T TIGR02203 553 ELLAR--NGLYAQLHNMQF 569 (571)
T ss_pred HHHHc--CCHHHHHHHHhh
Confidence 99986 789999988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-83 Score=702.71 Aligned_cols=531 Identities=28% Similarity=0.383 Sum_probs=444.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChHH--H-HH-HHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 047171 20 LFGTVGSIGDGMMTPLTMYILSMVINELGTSDISI--S-IE-AVDKV------------PEKGMCWTRTAERQASRIRME 83 (1224)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~--~-~~-~~~~~------------~~~~~~~~~~~~~~~~~lR~~ 83 (1224)
+.+.++..+.-+.....|.+.++++|.+...+... + +. .+..+ -++.++|..+.+-..+++-.+
T Consensus 218 ~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~ 297 (790)
T KOG0056|consen 218 VFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETE 297 (790)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHH
Confidence 34444444555566667788899999876432111 1 11 11111 345667777888888999999
Q ss_pred HHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHH
Q 047171 84 YLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL-VAFLLSWRLALAALPFSLLF 162 (1224)
Q Consensus 84 ~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~l~~~~~~ 162 (1224)
+|+|+.++++.|+-+ + ++|+++.-++...+.+. ++...+.++...+.-+.++++ +...+||+.+|+++++..++
T Consensus 298 lfrHlh~LSlrwHL~---r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY 372 (790)
T KOG0056|consen 298 LFRHLHNLSLRWHLN---R-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLY 372 (790)
T ss_pred HHHHHHhhceeeeec---c-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 999999999999998 5 99999888887777666 444444444444443333333 33457999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 047171 163 IVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GM 241 (1224)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 241 (1224)
..++..+...-.+..+++..+..+.-+...+++-+..|||-||+|+++.++|.+...++.+...|....-.+....- .+
T Consensus 373 ~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~I 452 (790)
T KOG0056|consen 373 CYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGI 452 (790)
T ss_pred hheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77766665555566677777777777888999999999999999999999999999999988877655444443333 44
Q ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccc
Q 047171 242 TYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTL 321 (1224)
Q Consensus 242 ~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 321 (1224)
..++.+..-.+.+|++..+.+|+|+++.|..|++.+..|+..++..+..+|+...-.++++++++++|++.+.+ +..+.
T Consensus 453 i~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl 531 (790)
T KOG0056|consen 453 IGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPL 531 (790)
T ss_pred hhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCc
Confidence 44444444555667788899999999999999999999999999999999999999999999999988876543 33444
Q ss_pred ccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh
Q 047171 322 AYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390 (1224)
Q Consensus 322 ~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 390 (1224)
...+|.|+|+||+|+|+++ ++|+++|+|||||+||||++++|.||||.++|+|.|||+||+.....++|
T Consensus 532 ~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred cccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 5567999999999999754 35779999999999999999999999999999999999999999999999
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
++||+||||..|||+||..||.||+|.+++||+.+|++.+++||-|..+|+||+|.|||+|-.|||||||||||||++++
T Consensus 612 s~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred HhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHH
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYS 550 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~ 550 (1224)
+|.|++|||+|||||..||+.||.+|.++..|||.|+|+||++++-+||.|+|+++|+|+|.|+|+||+++. +|.|+
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rd---gG~Ya 768 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRD---GGAYA 768 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhcc---CCcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999884 89999
Q ss_pred HHHHHHHHh
Q 047171 551 KMVQLQQSA 559 (1224)
Q Consensus 551 ~~~~~~~~~ 559 (1224)
+||+.|+..
T Consensus 769 ~MWq~qqa~ 777 (790)
T KOG0056|consen 769 DMWQAQQAM 777 (790)
T ss_pred HHHHHHHhc
Confidence 999877653
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-80 Score=788.10 Aligned_cols=538 Identities=25% Similarity=0.342 Sum_probs=472.8
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH----H----H---HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV----D----K---VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~----~----~---~~~~~~~~~~ 71 (1224)
+++++++.+++++ .++..++++++..++....|++++.++|.+... +...+...+ . . .+++.++...
T Consensus 142 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 142 LRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665543 334555556666666667778999999986533 211111100 0 0 0556777788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|.++|+|++++|+++|++ . ++|++++|+++| +.+++++...+..++.+++++++.++++++++|.+
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~---~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQ---R-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL 295 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcC---C-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 5 999999999988 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||++++|+.+.++|.+...+..+...+..+.
T Consensus 296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T TIGR03796 296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL 375 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.++...+. ++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77776665 66667778889999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCcc---c-cccc-ccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 047171 311 INSEDE---I-GKTL-AYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373 (1224)
Q Consensus 311 ~~~~~~---~-~~~~-~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 373 (1224)
.+.... . .... +...+.|+++||+|+|++. ++|+++|||||||||||||+++|+|+|+|++|+
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred cccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 322110 0 0111 2335789999999999742 357799999999999999999999999999999
Q ss_pred EEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCC
Q 047171 374 ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQ 453 (1224)
Q Consensus 374 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 453 (1224)
|++||+|+++++.+++|++||||+|||++|++||+|||+++.|++++++++++++.+++++++.++|+||||.+||+|.+
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeec
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g 533 (1224)
|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++ .++|+|+||||+++++.||+|++|++|+|++.|
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999976 589999999999999999999999999999999
Q ss_pred ChHHHHhhccCCCchHHHHH
Q 047171 534 SHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 534 ~~~~l~~~~~~~~~~y~~~~ 553 (1224)
+|+||+++ ++.|++++
T Consensus 694 ~~~~Ll~~----~~~y~~l~ 709 (710)
T TIGR03796 694 THEELWAV----GGAYARLI 709 (710)
T ss_pred CHHHHHHc----CCcHHHHh
Confidence 99999987 78898876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-80 Score=782.32 Aligned_cols=530 Identities=24% Similarity=0.333 Sum_probs=469.9
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH-----HH------HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV-----DK------VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~-----~~------~~~~~~~~~~ 71 (1224)
+++++++.+++++ .+...++++++..++....|++++.++|.+... +...+...+ .. .+++.++..+
T Consensus 135 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665543 345566666777777778889999999986532 222111110 00 0566777888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|.++|+|++++|++| ++ . ++|++++|+ +|++.+++++...+...+.+++++++.++++++++|.+
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~---~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 287 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RP---A-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPL 287 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CC---C-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999998 55 4 999999999 79999999999988888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus 288 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR03375 288 VWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFL 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+....+. .+..++.++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 447 (694)
T TIGR03375 368 SNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVE 447 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88777666 66667777888999999999999999999999999999999999999999999999999999999987664
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+... .....+...+.|+|+||+|+|++. ++|+++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 448 ~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 448 RPEGT-RFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCCC-CCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 32211 111122345689999999999742 25779999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++|+||+|||++|++||+|||++++|++++++++++++.+++++++.++|+||||.+||+|.+|||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
||||+||||++++|+|||||||||+||+++|+.+++.+.+..+++|+|+||||+++++.||+|++|++|+++|+|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Hhh
Q 047171 539 MQM 541 (1224)
Q Consensus 539 ~~~ 541 (1224)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-79 Score=760.66 Aligned_cols=566 Identities=26% Similarity=0.399 Sum_probs=491.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+.+.+++.++..++....++++..+++..... .....+.++++++.++..+..++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777778888888888888888888765431 111122333344444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
..+...++..+++.++++++++.|..+|+ +...|++++|+++|++.+...+...+..++..++..++.+++++.++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777778999999999999999 6789999999999999999888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+...+.....+..+...++..+..++..+.+.|.++|+++||+|+.++.+.+++.+..+...+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777777777777777788888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
.......+.+++..+..++++++|++++.+|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88777788888888888889999999999999999999999999888899999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 958 EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
+.+.. +... ...+..+.|+++||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 318 ~~~~~-~~~~--~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 318 DVRDP-PGAI--DLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred ccCCC-CCCC--CcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 32111 1100 111223579999999999742 469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCC
Q 047171 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117 (1224)
Q Consensus 1038 ~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~L 1117 (1224)
.+||+|+++++.+++|++|+||||||++|+|||||||.+++++.+|++++++++.+++++++.++|+|+||.+|++|.+|
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
|||||||||||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.++.||+|++|++|+++|+|+
T Consensus 473 SgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhHHhhcCCCchhHHHHHHhh
Q 047171 1198 QSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1198 ~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
|++|+++ ++.|++|+..+.
T Consensus 553 ~~~l~~~--~~~y~~l~~~~~ 571 (588)
T PRK13657 553 FDELVAR--GGRFAALLRAQG 571 (588)
T ss_pred HHHHHHC--CChHHHHHHHhh
Confidence 9999986 799999998653
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=753.04 Aligned_cols=565 Identities=24% Similarity=0.373 Sum_probs=493.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNF 718 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 718 (1224)
+++++++.++.++.++++++++++..++....|++++.+++.....+. ...+.++++++.++..+..++..+..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888888888888888999999999999987643211 11122222333444455555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 719 AIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRV 798 (1224)
Q Consensus 719 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 798 (1224)
.....++..++|.++|++++++|++||+ ++.+|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777788999999999999999 67799999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHH
Q 047171 799 AIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWF 878 (1224)
Q Consensus 799 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1224)
++++++++|+.+++.....+..++..++..+..++..+.+.|.++|+++||+|+.++.+.+++.+..+...+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777777777777778888999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047171 879 SGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSE 958 (1224)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 958 (1224)
.+....+..++..+..++++++|++++.+|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777778888888889999999999999999999998888888899999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEE
Q 047171 959 IDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038 (1224)
Q Consensus 959 ~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1038 (1224)
...... .. ..++..+.|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.
T Consensus 319 ~~~~~~-~~--~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 319 REEPAD-AP--ELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccCCcc-CC--CCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 221111 00 111234579999999999742 4589999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCC
Q 047171 1039 VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118 (1224)
Q Consensus 1039 idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1118 (1224)
+||+|+++++.+.+|++++||||||++|++|++|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHHHHhh
Q 047171 1199 SSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1199 ~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+||+++ +|.|+++|+.|.
T Consensus 554 ~~l~~~--~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQK--DGRFYKLLRRSG 571 (585)
T ss_pred HHHHHC--CChHHHHHHhCc
Confidence 999986 899999998875
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-79 Score=763.68 Aligned_cols=542 Identities=30% Similarity=0.433 Sum_probs=475.6
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChH-HHHH----HHHHH-------HHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS-ISIE----AVDKV-------PEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~----~~~~~-------~~~~~~~~~ 71 (1224)
+++++++.+++++. +++.+++.++..++....|++++.++|.....+.. .+.. .+... ++..++..+
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISW 91 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777665443 44555556666666667778889999876533211 1110 00000 455567778
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|.++|+++.++|.++|++ . ++|++++|+++|++.+++.+.+.+..++.+++++++.++++++++|.+
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~---~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDK---Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC---C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998 5 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
..+..... ++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 77776665 56666777788999999999999999999998888888899999999999999999999999999986544
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+... ...++..+.|+++||+|+|++. ++++++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 328 ~~~~~---~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 328 KDEGK---RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCCCC---cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 22111 1122234579999999999753 25679999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG-ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 457 (1224)
+|+++++.+++|++|+||||||++|++||+|||++|+++ .++++++++++.++++++++++|+|+||.+||+|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 999999999999999999999999999999999999764 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHH
Q 047171 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 458 q~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~ 537 (1224)
|||||+||||++++|+|||||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+|+|.|+|++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHHHHH
Q 047171 538 LMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 538 l~~~~~~~~~~y~~~~~~~~ 557 (1224)
|+++ ++.|+++++.|.
T Consensus 565 l~~~----~~~y~~l~~~~~ 580 (582)
T PRK11176 565 LLAQ----NGVYAQLHKMQF 580 (582)
T ss_pred HHhC----CChHHHHHHHHh
Confidence 9998 789999998653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-79 Score=754.93 Aligned_cols=525 Identities=22% Similarity=0.280 Sum_probs=452.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 642 LLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIM 721 (1224)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 721 (1224)
++++.++.++.+++.+++.++..++....|++++.+++....... ......+...++++.++..++.++..++....
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666667777777777777888888888876542111 00000111122234566777888888889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 722 GEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIV 801 (1224)
Q Consensus 722 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv 801 (1224)
+.++..++|.+++++++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.++++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 802 MIAVQPLNIGCF-YSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 802 ~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
+++.+|+..++. +...+..+...++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766554 3334444555566677788899999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
....+..++..+..++++++|++++..|.++.+.+.++..+......++..+...+..+.++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 88888888888888889999999999999999999999888888889999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
..+.... ...++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 319 ~~~~~~~-~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 319 EGVVPAA-GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCC-cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 1111100 0112234679999999999743 369999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1041 G~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
|+|++++ .+++|++|+||||||+||+|||||||++|+++++||++++|++.++++|||.++|+||||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCc
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRL 1175 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 1175 (1224)
||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-79 Score=699.58 Aligned_cols=528 Identities=24% Similarity=0.315 Sum_probs=460.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-hHHHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 22 GTVGSIGDGMMTPLTMYILSMVINELGTSD-ISISIEAV----DKV-------PEKGMCWTRTAERQASRIRMEYLKSVL 89 (1224)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~lR~~~~~~l~ 89 (1224)
..+++.+.+++...+.+++..+++.+.... ...+...+ ..+ +.+.....+.+.++..++|..+++|+.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555566666666543322 11111111 111 344555667788899999999999999
Q ss_pred cCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047171 90 RQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVF 169 (1224)
Q Consensus 90 ~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 169 (1224)
++++.+-++ . ++|+..+.+++.++.++.+++..+|.++...+.++..++.+|++||.-+++.++..|++.+....+
T Consensus 85 ~~gp~~~~~---~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 85 KLGPAFIAQ---K-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred hCChhhhcC---C-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 4 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 047171 170 GKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAF 248 (1224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (1224)
+++.++..+++.+.+.++++.+.+.++|+.|+|.|+..+...+++.+..++.++..++.-+..-...... ++.+++.++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998777665555556 778888877
Q ss_pred HHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccccc
Q 047171 249 QSWVGSVLVTE-RGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGE 327 (1224)
Q Consensus 249 ~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 327 (1224)
+..+.+..... |.++....+.++...--.+.|+..++..++.-+.+.++.+.++.+++.+++..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 77666666667 89998888888888888899999999999999999999999999998776533322110111112334
Q ss_pred EEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
++++|++|.||+. ++++.+||||+||||||||+++|+|+++|++|+|.+||+++++++.+.+|++++||
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 6666999999865 24669999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 047171 397 NQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILL 476 (1224)
Q Consensus 397 ~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ili 476 (1224)
+|+|++|++||+|||++++|+++++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++|||++++++++|
T Consensus 401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHH
Q 047171 477 LDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 477 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~ 556 (1224)
||||||+||.|||+.|.+.|.++.+++|+|+||||++.+.+||+|+|||+|+++|+|+|++|.++ +|.|++++..|
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~----~~~y~~l~~~q 555 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK----QGLYANLLKQQ 555 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc----CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 89999999887
Q ss_pred HH
Q 047171 557 QS 558 (1224)
Q Consensus 557 ~~ 558 (1224)
+.
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-78 Score=756.16 Aligned_cols=569 Identities=32% Similarity=0.513 Sum_probs=498.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 640 LRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFA 719 (1224)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 719 (1224)
+.++++.++.++.+.+.+++.++.+++....|+++..+++..+.... ......++.+++++.++..+..+++.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVT 83 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666677777777888888888888888876443211 112223344455556667777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 720 IMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVA 799 (1224)
Q Consensus 720 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 799 (1224)
..+.++...+|..+++++++.|.++|+ ...+|++++|+++|++.+++++...+..++..++.+++.+++++.++|.++
T Consensus 84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 84 WLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999998 567999999999999999999998888888889889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 047171 800 IVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFS 879 (1224)
Q Consensus 800 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1224)
+++++.+|+.+.+.+...+..++..++..+...+..+.+.|.++|+++||+++.++.+.+++.+..+...+...+.....
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777778888888888888888899999999999999999999999999999999998888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 047171 880 GIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEI 959 (1224)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 959 (1224)
.....+..++..+..++++++|++++.+|.++++.++++..+......|+..+...+.++..+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 66666666666677778888999999999999999999999888899999999999999999999999999999865542
Q ss_pred CCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE
Q 047171 960 DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039 (1224)
Q Consensus 960 ~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1039 (1224)
+....... .+.+..+.|+++||+|+||+++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++
T Consensus 322 ~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 322 KAPAHPKT--LPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred CCCCCCcc--CCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 21110000 1112345799999999998643467999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1040 DERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1040 dG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
||+|+++++.+++|++++||||||++|+|||||||.+++++.+|++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg 479 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|+
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHh
Q 047171 1200 SLLSMGNGGAYYSLIKMQ 1217 (1224)
Q Consensus 1200 eLl~~~~~g~y~~l~~~q 1217 (1224)
+|+++ ++.|++|++.|
T Consensus 560 ~l~~~--~~~~~~l~~~~ 575 (576)
T TIGR02204 560 ELIAK--GGLYARLARLQ 575 (576)
T ss_pred HHHHc--CChHHHHHhhc
Confidence 99986 89999999776
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-79 Score=752.59 Aligned_cols=544 Identities=24% Similarity=0.334 Sum_probs=477.3
Q ss_pred HhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 047171 664 GAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIG 743 (1224)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ 743 (1224)
.++....|++++.+++........ ......|+++++++.++..++.++..++....+.++..++|.+++++++++|++
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 344455677777777755322111 112233455555566667777888888888899999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 744 WFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLS-LLVTWRVAIVMIAVQPLNIGCFYSRSVLMKS 822 (1224)
Q Consensus 744 ~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~ 822 (1224)
||+ ++++|++++|+++|++.++..+...+..++..++..++.++++ +.++|.+++++++++|+.+++.+...+..++
T Consensus 86 ~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 86 FYL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 6789999999999999999888777777777766666555555 5899999999999999888887777777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 823 MSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAG 902 (1224)
Q Consensus 823 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1224)
..++.++..++..+.+.|.+.|+++||+|+.|+.+.++|.+..++..+...+..+..+....+......+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888999999999999999999999999999999999999988888888887777777777777888889999
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEE
Q 047171 903 RIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKN 982 (1224)
Q Consensus 903 ~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~ 982 (1224)
+++.+|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.+++..... . ..++..+.|+++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~--~~~~~~~~I~~~~ 318 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---E--PVPEGRGELDVNI 318 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---C--CCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999998654322111 0 1112346799999
Q ss_pred EEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecC
Q 047171 983 VFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQE 1062 (1224)
Q Consensus 983 vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd 1062 (1224)
|+|+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||+
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999743 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 047171 1063 PTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142 (1224)
Q Consensus 1063 p~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDE 1142 (1224)
|++|++|++|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+||||||
T Consensus 398 ~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE 477 (569)
T PRK10789 398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477 (569)
T ss_pred CeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1143 ATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1143 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|+|+|++|+++ +|.|++|++.|..
T Consensus 478 pts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~y~~l~~~~~~ 552 (569)
T PRK10789 478 ALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ--SGWYRDMYRYQQL 552 (569)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc--CChHHHHHHHhhh
Confidence 99999999999999999998889999999999999999999999999999999999999986 7999999987654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-78 Score=765.92 Aligned_cols=541 Identities=29% Similarity=0.407 Sum_probs=478.0
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH-----H---H---HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV-----D---K---VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~-----~---~---~~~~~~~~~~ 71 (1224)
+.+++++.+++++ .+...++++++..++....|++++.++|.+... +...+...+ . . .+++.++...
T Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655543 345556666666667777788999999987532 222221110 0 0 0567777888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|.++|+|++++|++||++ . ++|++++|+ +|++.+++++...+..++.++.++++.++++++++|.+
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~---~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFES---R-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCC---C-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 5 999999999 69999999998888888888887777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+...... .+..++.++++|+|++++.+|.+|+|.++++..+......|+..+...+..++++..+++|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 87776666 66667778889999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+.. .....+...+.|+++||+|+|++. ++|+++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 441 ~~~~--~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 441 PRSA--GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred ccCC--CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 3221 111122345789999999999642 25679999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++|+||+|+|++|++||+|||.+++|++++++++++|+.+++++++.++|+|+||.+|++|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|+||
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~~~ 556 (1224)
++. ++.|+++++.|
T Consensus 679 ~~~----~~~y~~l~~~~ 692 (694)
T TIGR01846 679 LAL----QGLYARLWQQQ 692 (694)
T ss_pred HHc----CChHHHHHHhh
Confidence 987 89999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-78 Score=752.51 Aligned_cols=540 Identities=25% Similarity=0.360 Sum_probs=461.2
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC-CChH--HHHH----HHH----HH---HHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGT-SDIS--ISIE----AVD----KV---PEKGMCW 69 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~--~~~~----~~~----~~---~~~~~~~ 69 (1224)
++++++|.+++++ .+++.+++.++..++.+..|+++++++|.+.. .+.. .... .+. .. ++..+..
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554433 44566777777778888888999999997643 2211 1110 010 00 4556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 047171 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSW 149 (1224)
Q Consensus 70 ~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1224)
...+.++..++|.++|+++++.|.++|++ . ++|++++|+++|++.+++.+.+.+..++.++..+++.++++++++|
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~---~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDT---Q-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC---C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999998 5 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 047171 150 RLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQG 229 (1224)
Q Consensus 150 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 229 (1224)
.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998889888888888888888888888899999999999999999999999999999999999888888777766
Q ss_pred HHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047171 230 LTKGLL-LGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDR 307 (1224)
Q Consensus 230 ~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~ 307 (1224)
+..+.. .++. ++..+...+++++++. +..|.+++|.++++..+......|+..+...+..++++..+++|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 665543 2222 2222222223333344 578999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 047171 308 VPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376 (1224)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 376 (1224)
+++.... ...+...++|+|+||+|+|++. ++|+++||||+||||||||+++|+|+|+|++|+|.+
T Consensus 325 ~~~~~~~----~~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 325 PRQQYGN----DDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred CCccCCC----CccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 5432111 1112234679999999999742 256799999999999999999999999999999999
Q ss_pred CCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCCh
Q 047171 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456 (1224)
Q Consensus 377 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 456 (1224)
||+|+++++.+++|++|+||||||++|++||+|||++|+ ++++++++++++.++++++++++|+|+||.+||+|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999998 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChH
Q 047171 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHD 536 (1224)
Q Consensus 457 Gq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~ 536 (1224)
||||||+|||||+++|+|||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHhhccCCCchHHHHHHHHHH
Q 047171 537 VLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 537 ~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
||+++ ++.|+++++.|..
T Consensus 560 ~L~~~----~~~y~~l~~~~~~ 577 (592)
T PRK10790 560 QLLAA----QGRYWQMYQLQLA 577 (592)
T ss_pred HHHhC----CCHHHHHHHHHhh
Confidence 99988 8999999987743
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=742.92 Aligned_cols=543 Identities=27% Similarity=0.362 Sum_probs=472.7
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChH-H-HHHHHHH---HHHHHHHHHHH----HH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS-I-SIEAVDK---VPEKGMCWTRT----AE 74 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~----~~ 74 (1224)
++++++|.+++++ .++++++++++..++.+..|+++++++|.+...+.. . +...+.. .++..++..+. +.
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888877654 456777888888888888999999999986543211 1 1111111 13334444444 44
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047171 75 RQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALA 154 (1224)
Q Consensus 75 ~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 154 (1224)
++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+.+.+..++..++++++.++++++++|.++++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~---~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQ---R-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCC---C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556669999999999999998 5 999999999999999999999888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 155 ALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL 234 (1224)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1224)
+++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..++
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (585)
T TIGR01192 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWAL 241 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888887777776
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 047171 235 LLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINS 313 (1224)
Q Consensus 235 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 313 (1224)
..++. .+..+..++++++|++++.+|.+++|.++++..++.....|+..+...+..++++..+++|+.++++.+++.++
T Consensus 242 ~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 321 (585)
T TIGR01192 242 ASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 66655 55666677788999999999999999999999999999999999999999999999999999999987554322
Q ss_pred CcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC
Q 047171 314 EDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382 (1224)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 382 (1224)
.. .....+...+.|+++||+|+|++. ++|+++||+||||||||||+++|+|+|+|++|+|.+||++++
T Consensus 322 ~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 400 (585)
T TIGR01192 322 PA-DAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400 (585)
T ss_pred Cc-cCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhh
Confidence 11 111112234579999999999752 256799999999999999999999999999999999999999
Q ss_pred CCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 383 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
+++.+++|++++||+|+|++|++|++|||.++.|++++++++++++.+++++++.++|+|++|.+|++|.+|||||||||
T Consensus 401 ~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred hCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhc
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
+|||||+++|++||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|+|++++
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 559 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK- 559 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-
Confidence 9999999999999999999999999999999999988889999999999999999999999999999999999999987
Q ss_pred cCCCchHHHHHHHH
Q 047171 543 NGEGGAYSKMVQLQ 556 (1224)
Q Consensus 543 ~~~~~~y~~~~~~~ 556 (1224)
++.|+++++.+
T Consensus 560 ---~~~y~~l~~~~ 570 (585)
T TIGR01192 560 ---DGRFYKLLRRS 570 (585)
T ss_pred ---CChHHHHHHhC
Confidence 88999998765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=744.05 Aligned_cols=541 Identities=31% Similarity=0.434 Sum_probs=483.1
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-hHHHHHHH----HH----H---HHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD-ISISIEAV----DK----V---PEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~----~~----~---~~~~~~~~~ 71 (1224)
+++++++.++++ ..++++++++++.+++.+..|++++.++|...... ...+.... .. . ++..++..+
T Consensus 2 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 2 FRRLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666554 35677788888888888889999999999654322 11111100 00 0 566777888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|..+++++.+.|.++|++ . ++|++++|+++|++.+++++.+.+..++.+++.+++.++++++++|.+
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~~---~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l 156 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFDR---Q-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQL 156 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCC---C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999998 4 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++..|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+++.|+.+.++|++..++..+...+..+.
T Consensus 157 ~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (571)
T TIGR02203 157 TLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA 236 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+....+. .+..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (571)
T TIGR02203 237 GSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPE 316 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88777666 66667777888999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+... ....+..++|+++||+|+|++. +++++++|+|+||||||||+++|+|+|+|++|+|++||
T Consensus 317 ~~~~~---~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 317 KDTGT---RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCCC---CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 32211 1112234679999999999752 25669999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 457 (1224)
+|+++++.+++|++|+||||+|++|++||+|||.++++ +.++++++++++.+++++++.++|+|+||.+||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999986 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHH
Q 047171 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 458 q~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~ 537 (1224)
|||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|++++.|+|++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHHHH
Q 047171 538 LMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 538 l~~~~~~~~~~y~~~~~~~ 556 (1224)
+++. ++.|++++..+
T Consensus 554 l~~~----~~~~~~~~~~~ 568 (571)
T TIGR02203 554 LLAR----NGLYAQLHNMQ 568 (571)
T ss_pred HHHc----CCHHHHHHHHh
Confidence 9987 77898887654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-77 Score=741.99 Aligned_cols=544 Identities=29% Similarity=0.402 Sum_probs=468.1
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh-HHHH-HHHHH-H--HHHHHHH----HHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDI-SISI-EAVDK-V--PEKGMCW----TRTAE 74 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~-~~~~~-~--~~~~~~~----~~~~~ 74 (1224)
+++++++.++++ ..+++.++++++..++.+..|++++.++|.+..... ..+. ..+.. . ++..+.. .+...
T Consensus 7 ~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK13657 7 YARVLQYLGAEK-RLGILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAH 85 (588)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766553 345566677777777778888999999998654321 1111 00100 0 2222223 33444
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047171 75 RQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALA 154 (1224)
Q Consensus 75 ~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 154 (1224)
++..++|.++|+|++++|..+|++ . ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|.++++
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~---~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 161 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQ---R-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLV 161 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCc---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556669999999999999998 5 999999999999999999888888888888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 155 ALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGL 234 (1224)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1224)
+++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||.|+.++.+.++|.+..++..+...+.....+.
T Consensus 162 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK13657 162 LVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWAL 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999999999999999999999888887777776
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 047171 235 LLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINS 313 (1224)
Q Consensus 235 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 313 (1224)
...+. ++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.++..+++|+.++++.+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 321 (588)
T PRK13657 242 ASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 66555 55666677788999999999999999999999999999999999999999999999999999999986554222
Q ss_pred CcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC
Q 047171 314 EDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382 (1224)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 382 (1224)
.. .....+...+.|+++||+|+|++. ++++++||||+||||||||+++|+|+|+|++|+|.+||+|++
T Consensus 322 ~~-~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~ 400 (588)
T PRK13657 322 PP-GAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400 (588)
T ss_pred CC-CCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhh
Confidence 11 111122234579999999999753 256799999999999999999999999999999999999999
Q ss_pred CCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 383 KLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 383 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
+++.+++|++|+||||+|++|++||+|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+|||||||||
T Consensus 401 ~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 401 TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred hCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhc
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
+||||++++|+|||||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|++|+++
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~- 559 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR- 559 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-
Confidence 9999999999999999999999999999999999988789999999999999999999999999999999999999987
Q ss_pred cCCCchHHHHHHHHH
Q 047171 543 NGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 543 ~~~~~~y~~~~~~~~ 557 (1224)
++.|+++++.+.
T Consensus 560 ---~~~y~~l~~~~~ 571 (588)
T PRK13657 560 ---GGRFAALLRAQG 571 (588)
T ss_pred ---CChHHHHHHHhh
Confidence 789999988654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=739.24 Aligned_cols=502 Identities=22% Similarity=0.258 Sum_probs=435.0
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChH-HHH-HH--H--HHH------HHHHHHHHHH
Q 047171 5 GGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDIS-ISI-EA--V--DKV------PEKGMCWTRT 72 (1224)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~-~~--~--~~~------~~~~~~~~~~ 72 (1224)
+++++|.+++++ .+++++++.++.+++....|+++++++|.....+.. .+. .. + ... ++..++..+.
T Consensus 2 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (529)
T TIGR02868 2 LRILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDA 80 (529)
T ss_pred hhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776654 455667777777777778889999999976432211 110 00 0 000 5566777888
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047171 73 AERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLA 152 (1224)
Q Consensus 73 ~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (1224)
+.++..++|.++|+|++++|.+||++ . ++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|.++
T Consensus 81 ~~~~~~~lr~~~~~~ll~~~~~~~~~---~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 156 (529)
T TIGR02868 81 ALRSLGRLRVRVYDRLARLALAGRRR---F-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA 156 (529)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccc---C-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999998 5 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 153 LAALPFSLLFIVPGIVFG-KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 153 l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
+++++.+|++.++..++. +..++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+..+.
T Consensus 157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02868 157 LVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARA 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888766654444 4446667778888999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+...++. ++..+..++++++|++++.+|.+++|.++++..+......|+..+...+..++++.++.+|+.++++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (529)
T TIGR02868 237 TGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGP 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88777666 66667777788999999999999999999999999999999999998999999999999999999987654
Q ss_pred CCCCccc-ccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEI-GKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+..... ........++|+|+||+|+|++. ++|+++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 317 RPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred cCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 3221100 01111234579999999999753 25779999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|++++ .+++|++|+||||||+||++||+|||++|+|++++++++++++.+++++|+.++|+||||.+||+|.+|||||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCc
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l 512 (1224)
|||||||||++++|+|||||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-80 Score=670.77 Aligned_cols=491 Identities=31% Similarity=0.457 Sum_probs=432.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 047171 716 YNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAY-TLSLLV 794 (1224)
Q Consensus 716 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 794 (1224)
..+..+++.+...+--+.|.|+.++++.|.- +..+|.+...+......++..+...+..++..++-+.... ++...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4566778888888899999999999999987 4456776666666666666666666666666665444444 344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHH
Q 047171 795 TWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874 (1224)
Q Consensus 795 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 874 (1224)
+|+.+++.++++.+.+++........-...++...+.+..+....+++-+..|+|.|+.|+.+..+|...++.+.++..+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 89999988888887777766555555566778888889999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047171 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILD 954 (1224)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 954 (1224)
.....++.......+......+....+...+..|.+|.|+++..-.++.....|+..+...+.++.++....++++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 77766666666677777777777778888889999999999998888888899999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCC-CCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC
Q 047171 955 RKSEIDPEDPKASEDIEE-PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033 (1224)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~-~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1033 (1224)
.+.+..... ..+ +.+ -..|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+||||+.++|+|||+++
T Consensus 242 ~~~~v~d~p-da~--~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~ 316 (497)
T COG5265 242 VEAEVSDAP-DAP--PLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN 316 (497)
T ss_pred cchhhccCC-CCc--cccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc
Confidence 776543321 111 223 3457899999999996 4578999999999999999999999999999999999999999
Q ss_pred CceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCC
Q 047171 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113 (1224)
Q Consensus 1034 ~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~ 1113 (1224)
+|.|.|||+|++++..+++|+.||+||||..||++|+..||.||+|.++++|+++|++.+++++||+++|+||||.|||+
T Consensus 317 sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vger 396 (497)
T COG5265 317 SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396 (497)
T ss_pred CceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 047171 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVV 1193 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Iv 1193 (1224)
|-.||||||||+||||++|++|+||+||||||+||.+||++||.+|++..+|+|+++|||||+|+.+||.|+||++|+|+
T Consensus 397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhhcCCCchhHHHHH
Q 047171 1194 EQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1194 e~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
|.|||+||+++ +|.|++||.
T Consensus 477 erg~h~~ll~~--~g~ya~mw~ 496 (497)
T COG5265 477 ERGTHEELLAA--GGLYAEMWR 496 (497)
T ss_pred ecCcHHHHHHc--CChHHHHhc
Confidence 99999999997 899999995
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=734.18 Aligned_cols=518 Identities=27% Similarity=0.384 Sum_probs=455.3
Q ss_pred HhHHHHHHHHHHHHHhhhcCC--ChHHHHHHH----HH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhh
Q 047171 30 GMMTPLTMYILSMVINELGTS--DISISIEAV----DK----V---PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFF 96 (1224)
Q Consensus 30 ~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~----~~----~---~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f 96 (1224)
.++..+.|++++.++|.+... +...+...+ .. . ++..++....+.++..++|.++|+|++++|.++|
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~ 87 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFY 87 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344445667899999976432 111111100 00 0 4455667778899999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 97 DNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVA-FLLSWRLALAALPFSLLFIVPGIVFGKVLKD 175 (1224)
Q Consensus 97 ~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~ 175 (1224)
++ . ++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++++|+++++..++.++.++
T Consensus 88 ~~---~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 88 LR---H-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred cC---C-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 5 99999999999999999888888888888776666666655 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 047171 176 LGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGS 254 (1224)
Q Consensus 176 ~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 254 (1224)
..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+...+.. .+..++.++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888888777766655 555566677888999
Q ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEE
Q 047171 255 VLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVD 334 (1224)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 334 (1224)
+++.+|.+|+|.++++..+......|+..+...+..++++.++.+|+.++++.+++.+... ...+...+.|+++||+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999998765432211 1122234679999999
Q ss_pred EECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCC
Q 047171 335 FSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL 402 (1224)
Q Consensus 335 f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 402 (1224)
|+|++. ++|++++|+||||||||||+++|+|+|+|++|+|.+||+++++++..++|++|+||+|+|++
T Consensus 321 ~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred EECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 999742 25669999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 403 FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 403 f~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
|++|++|||+++.|+.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 483 ALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++++|+|++++++ ++.|+++++.|..
T Consensus 481 ~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~----~~~y~~l~~~~~~ 552 (569)
T PRK10789 481 AVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ----SGWYRDMYRYQQL 552 (569)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc----CChHHHHHHHhhh
Confidence 99999999999999988889999999999999999999999999999999999999987 7899999987653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=729.05 Aligned_cols=527 Identities=25% Similarity=0.342 Sum_probs=462.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 651 KRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVR 730 (1224)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 730 (1224)
+.+.++++++++.+++.+..|++++.+++........ ......+.++++++.++..++.++..+.....+.++..++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888888899999988866422111 12233455566677778888999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 731 EKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNI 810 (1224)
Q Consensus 731 ~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~ 810 (1224)
.++++++++.|..+|+ +.++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+.+
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999998 67899999999999999999999888888888888888888999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 811 GCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLT 890 (1224)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1224)
++.+...+..+...++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888999999999999999999999999999999999988888887777777777777766
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC
Q 047171 891 TASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDI 970 (1224)
Q Consensus 891 ~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~ 970 (1224)
.+..++++.++++.+..|.++++.++++..+......|+..+...+..+.++..+.+|+.++++.+++... . .. .
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~--~ 313 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--AP--V 313 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cC--C
Confidence 66666666666667778999999999888888888889999999999999999999999999975432111 1 00 1
Q ss_pred CCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH
Q 047171 971 EEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 971 ~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~ 1050 (1224)
+.+..+.|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 11123579999999999854 34799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
++|++++||||||++|++||||||.++.++.+|++++++++.+++++++.++|+||||.+||+|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|+||
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=672.34 Aligned_cols=542 Identities=28% Similarity=0.390 Sum_probs=447.4
Q ss_pred hHHHHhhccchh----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc--CCChH---HHHHHHHHH-----------H
Q 047171 4 KGGLFRYADGKD----KLLLLFGTVGSIGDGMMTPLTMYILSMVINELG--TSDIS---ISIEAVDKV-----------P 63 (1224)
Q Consensus 4 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~---~~~~~~~~~-----------~ 63 (1224)
.+.+..|..++. +..++.++.+.+.+.......|.+++.++|.+. ...+. .....+..+ .
T Consensus 13 ~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~e 92 (591)
T KOG0057|consen 13 LRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNE 92 (591)
T ss_pred HHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555544332 223344444445556777778889999999863 11110 000011111 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH-H
Q 047171 64 EKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSI-L 142 (1224)
Q Consensus 64 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~ 142 (1224)
++...+.++.+++..+.-.++|.|++.+++++|.+ . .+|++.+.+..-...|..++...+..++..++-+.... .
T Consensus 93 l~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~---~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~ 168 (591)
T KOG0057|consen 93 LRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS---R-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGI 168 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC---C-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999999999999999999999998 5 99999999999999999999888887777766544433 3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNM 222 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~ 222 (1224)
+..-..+..+++.+..+..+...+.....+-.+..++..++.+.....+.|.+.|..+||+||.|++|.++|+....++.
T Consensus 169 l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~ 248 (591)
T KOG0057|consen 169 LYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYE 248 (591)
T ss_pred HHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33335666667766666666666666666667778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 223 ELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRI 301 (1224)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 301 (1224)
+...+.....++....- .+.....+.+.+.|..-+.++.+|.|+++......+++..|+..+...+..+.++..-++.+
T Consensus 249 ~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~ 328 (591)
T KOG0057|consen 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTL 328 (591)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 98888766666554433 44444555566677777888999999999988888999999999998888888888777776
Q ss_pred HHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 302 FEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
+...+....+.+ ...+....++.|+|+||+|+|++. ++|++|||||+|||||||++++|.||++ +
T Consensus 329 ~~l~~~~~~i~~---~~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~ 404 (591)
T KOG0057|consen 329 FILLEVDEDIQE---AALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y 404 (591)
T ss_pred Hhhhhhhhhhhh---ccCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence 655443222211 112333446789999999999754 3677999999999999999999999999 9
Q ss_pred CcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCC
Q 047171 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450 (1224)
Q Consensus 371 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 450 (1224)
+|+|+|||+|+++++.+++|+.|||||||..||++||.+||.||+|.+++||+.++|+.+++||.+.++|+||+|.+||+
T Consensus 405 sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 405 SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEE
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVI 530 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~ 530 (1224)
|..||||||||||||||++|||||++||||||+||.+||+.+.+.+.+...|||+|+|+||++++++||+|+++++|++.
T Consensus 485 G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564 (591)
T ss_pred ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred eecChHHHHhhccCCCchHHHHHHHHH
Q 047171 531 ESGSHDVLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 531 ~~g~~~~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
|.|+|+||++. .+.|+++|..|.
T Consensus 565 e~gth~ell~~----s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 565 EYGTHSELLAP----SELYADLWTTQT 587 (591)
T ss_pred EeccHHHHhhh----hhHHHHHhcccc
Confidence 99999999996 889999998654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=730.23 Aligned_cols=544 Identities=35% Similarity=0.512 Sum_probs=474.7
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-CCChHHHHHHH----H----H---HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELG-TSDISISIEAV----D----K---VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~~~----~----~---~~~~~~~~~~ 71 (1224)
++.+++|.+++++ .+.+.+++.++.+++....|++++.++|... ..+...+...+ . . .++..++..+
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777765543 4456667777778888888899999999744 22221111100 0 0 0556677788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.+.++..++|..++++++++|.++|++ . ++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.+
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~---~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDK---N-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcc---C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 899999999999999999999999998 4 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+....
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (576)
T TIGR02204 161 TSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999999999999999999999999999999888887777776
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
........ ++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 320 (576)
T TIGR02204 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 66655554 45556667778899999999999999999999999999999999999999999999999999999986554
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 377 (1224)
.+..........+..+.|+++||+|+|++. ++|++++|+|+||||||||+++|+|+|+|++|+|++|
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 221110001111223579999999999742 2566999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH
Q 047171 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457 (1224)
Q Consensus 378 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 457 (1224)
|.|+++++.+++|++|+||||+|++|++||+|||.+|+|+.++++++++++.++++++++++|+|+||.+||+|.+||||
T Consensus 401 g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 401 GVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred CEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHH
Q 047171 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 458 q~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||||++||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhccCCCchHHHHHHHH
Q 047171 538 LMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 538 l~~~~~~~~~~y~~~~~~~ 556 (1224)
++++ ++.|+++++.|
T Consensus 561 l~~~----~~~~~~l~~~~ 575 (576)
T TIGR02204 561 LIAK----GGLYARLARLQ 575 (576)
T ss_pred HHHc----CChHHHHHhhc
Confidence 9987 78999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-75 Score=716.05 Aligned_cols=536 Identities=23% Similarity=0.320 Sum_probs=463.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 651 KRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVR 730 (1224)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 730 (1224)
+.++..+++.++..++....|+++..+++....... ......+.++++++.++..++.+++.++....+.++..++|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 6 STFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777788888888886542211 11223345556666677788889999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 731 EKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIAD-RMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLN 809 (1224)
Q Consensus 731 ~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~ 809 (1224)
.+++++++++|+.. .+...+++++|++.+++.+.. .+..++..++.++. ++++++++|.+++++++..|+.
T Consensus 83 ~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999842 245688899999999988877 45555555555444 4567889999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047171 810 IGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFL 889 (1224)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1224)
+++.+...+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+....+..++
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666777777788888899999999999999999999999999999999999888888888888878888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCC
Q 047171 890 TTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASED 969 (1224)
Q Consensus 890 ~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~ 969 (1224)
..+..++++++|++++..|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.+++..+. .
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~--- 308 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---M--- 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---C---
Confidence 8888888899999999999999999999999999899999999999999999999999999999765442211 0
Q ss_pred CCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 970 IEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 970 ~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
..++..+.|+++||+|+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.
T Consensus 309 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 309 PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 111234579999999999743 3579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+.+|++++||||||++|++|++|||.++.+++++++++++++.++++++++++|+|+||.+|++|.+|||||||||+|||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9999999999999999999999999999999875 68999999999999999999999999999999999999763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-75 Score=653.32 Aligned_cols=527 Identities=23% Similarity=0.326 Sum_probs=436.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh-HHH---HH-----HHHHH-----HHHHHHHHHHHHHHHHHHH
Q 047171 16 KLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDI-SIS---IE-----AVDKV-----PEKGMCWTRTAERQASRIR 81 (1224)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~---~~-----~~~~~-----~~~~~~~~~~~~~~~~~lR 81 (1224)
+..+.++++++++..+....+..+-|++|..-.-... ..+ .. .+... |.-.+..+....++..++|
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lR 94 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALR 94 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455667777666665555555566777765211111 111 10 00000 6667778888999999999
Q ss_pred HHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHH
Q 047171 82 MEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALP-FSL 160 (1224)
Q Consensus 82 ~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~-~~~ 160 (1224)
.++|+++...+..-..+ .++||+++|+..|++.+++.+-..+...+..+..+.+..+.+-++||.+++.... .+.
T Consensus 95 v~~f~kl~p~sp~~~~r----~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~ 170 (573)
T COG4987 95 VRLFEKLEPLSPALLLR----YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL 170 (573)
T ss_pred HHHHHhhccCChHHHHh----cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998 4999999999999999999999999999999888888888888899998865544 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 047171 161 LFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM- 239 (1224)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (1224)
+++++...+.++-++..++..+..+...+.+.|.+.|....+.||+++.+.+.+........+...|...+.++...+.
T Consensus 171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~ 250 (573)
T COG4987 171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL 250 (573)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888889999999999999999999999999999999999999999998888888888888877666
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 047171 240 GMTYGAWA-FQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSAL-PNLSFISQATTAATRIFEMIDRVPVINSEDEI 317 (1224)
Q Consensus 240 ~~~~~~~~-~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 317 (1224)
++..+..+ .++|.++ .+-.|..+......+++.++....++..+. ..+....+...|++|+.++++.+|+...+++
T Consensus 251 l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~- 328 (573)
T COG4987 251 LIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE- 328 (573)
T ss_pred HHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc-
Confidence 44333333 4455543 344455553333333333333334444444 5568899999999999999998887554311
Q ss_pred ccccccccccEEEEeEEEECCCCC------------CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC
Q 047171 318 GKTLAYLRGEIEFKDVDFSYPTRP------------DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385 (1224)
Q Consensus 318 ~~~~~~~~~~i~~~~v~f~y~~~~------------~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 385 (1224)
..+.. ...++++||||+||+.+ +|+++||+|+|||||||++++|.|.|+|++|+|.++|.++..++
T Consensus 329 -~~~~~-~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 329 -QTATT-GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD 406 (573)
T ss_pred -ccCCc-cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC
Confidence 11111 12799999999998653 56799999999999999999999999999999999999999999
Q ss_pred HHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHH
Q 047171 386 LKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 386 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
.+.+|+.|++++|.++||++|+|||+++++|++++|++++++++++++++++..|+||+|.+||.|..||||||||+|||
T Consensus 407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA 486 (573)
T COG4987 407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA 486 (573)
T ss_pred hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCC
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGE 545 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~ 545 (1224)
|+|++|+|++||||||.+||++||+.+.+.+.+..+|||+|+||||+..++.+|||+||++|+++|+|+|++|+++
T Consensus 487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~---- 562 (573)
T COG4987 487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN---- 562 (573)
T ss_pred HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CchHHHHHH
Q 047171 546 GGAYSKMVQ 554 (1224)
Q Consensus 546 ~~~y~~~~~ 554 (1224)
+|.|+++++
T Consensus 563 ~g~~~~l~q 571 (573)
T COG4987 563 NGRYKRLYQ 571 (573)
T ss_pred ccHHHHHhc
Confidence 899998875
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-77 Score=647.65 Aligned_cols=479 Identities=31% Similarity=0.434 Sum_probs=422.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHH
Q 047171 67 MCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFI-GSILVAF 145 (1224)
Q Consensus 67 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ 145 (1224)
.++...++.....+--+.|.|+.++++.|+-+ + .+|.+...+....+.|+..+...+...+..++-+. .++++..
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~---r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE---R-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh---c-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 45677788888888899999999999999998 5 88888777777777777777666666666655443 3445566
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 047171 146 LLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELG 225 (1224)
Q Consensus 146 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~ 225 (1224)
.++|+.++++++.+.++.++.......-....++..++.+++++...+++-+..+||.|+.|+.+..+|++.++.+.+..
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 68999999999888888777666555555566778888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 226 IKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEM 304 (1224)
Q Consensus 226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 304 (1224)
.|.....+++...- .+.......+...+...+..|.+|.|+++....++++.+.|+..++..+..+.+++.-.++++++
T Consensus 160 ~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 160 IKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 88665555544333 44455556666778888899999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCcccccccc-cccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 305 IDRVPVINSEDEIGKTLA-YLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 305 l~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
++.+.++.+.+ +.++.. ...|.|.|+||+|.|.++ +.++++|+|||||+||||++++|.||||+++|
T Consensus 240 l~~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 240 LDVEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred hccchhhccCC-CCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 99877655432 222222 345789999999999653 35679999999999999999999999999999
Q ss_pred EEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCC
Q 047171 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGV 452 (1224)
Q Consensus 373 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 452 (1224)
.|.+||+|+++...+++|+.||+||||..||++|+..||.||+|+++++|+..+++.+++|+||+.+|+||+|.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEee
Q 047171 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIES 532 (1224)
Q Consensus 453 ~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~ 532 (1224)
.|||||||||||||+++++|+||+|||+|||||.+||+.||.+|++..+|+|+++|+|||+|+-+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHhhccCCCchHHHHHH
Q 047171 533 GSHDVLMQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 533 g~~~~l~~~~~~~~~~y~~~~~ 554 (1224)
|+|+||++. +|.|++||.
T Consensus 479 g~h~~ll~~----~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA----GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc----CChHHHHhc
Confidence 999999998 999999985
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-74 Score=711.06 Aligned_cols=499 Identities=24% Similarity=0.300 Sum_probs=438.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-CC-ChHHHHHHH----H----H---HHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 19 LLFGTVGSIGDGMMTPLTMYILSMVINELG-TS-DISISIEAV----D----K---VPEKGMCWTRTAERQASRIRMEYL 85 (1224)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~-~~~~~~~~~----~----~---~~~~~~~~~~~~~~~~~~lR~~~~ 85 (1224)
++++++++++.+++.+..|+++++++|.+. .. +...+...+ . . .++..++..+.+.++..++|.++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 84 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLL 84 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888999999999873 32 212111110 0 0 056677788899999999999999
Q ss_pred HHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 86 KSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVP 165 (1224)
Q Consensus 86 ~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~ 165 (1224)
+|++++|..+|++ . ++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|.+++++++.+|+..++
T Consensus 85 ~~l~~~~~~~~~~---~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~ 160 (529)
T TIGR02857 85 AAVAALGPGWLQG---R-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIF 160 (529)
T ss_pred HHHHhCCchhhcc---C-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999998 5 99999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 047171 166 GIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYG 244 (1224)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 244 (1224)
..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+. ++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02857 161 MILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATL 240 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999889999999999999999999999999999999999999999999999888888777766655555 44444
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc
Q 047171 245 AWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYL 324 (1224)
Q Consensus 245 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 324 (1224)
..+++++++++.+.+|.+|+|.++++..+......|+..+...+..++++..+++|+.++++.+++..+.. ... ...
T Consensus 241 ~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~--~~~-~~~ 317 (529)
T TIGR02857 241 SVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA--PVT-AAP 317 (529)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc--CCC-CCC
Confidence 55555566777777999999999999999999999999999999999999999999999998543221111 111 112
Q ss_pred cccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcc
Q 047171 325 RGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
.+.|+++||+|+|++. ++|+++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 3579999999999753 2567999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+||+|+|++|++||+|||.++.+++++++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEE
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVL 524 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl 524 (1224)
+|+|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-74 Score=768.80 Aligned_cols=481 Identities=23% Similarity=0.300 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 63 PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL 142 (1224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (1224)
++..++..+.+.+...++|.++++++++.|++||++ . ++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 1023 ~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~---~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li 1098 (1522)
T TIGR00957 1023 FGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER---T-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALI 1098 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778899999999999999999999999998 5 999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNM 222 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~ 222 (1224)
++++.+|.+++++++++++++++..++.+..+...+...+..+.+.+.+.|+++|+++||+|++|+.+.+++.+..+...
T Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1099 VILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999998877777767777777777777777777778888899999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 223 ELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVT-ERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATR 300 (1224)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r 300 (1224)
+..........+..... .+. .++++++|++.+. .|.+++|.+.+++.|+.....|+..+...+..++++.+|++|
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eR 1255 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVER 1255 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655544444444333 222 2233444555554 578999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCcccccccc--cccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 301 IFEMIDRVPVINSEDEIGKTLA--YLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 301 i~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+.++++.+++.+...+...+++ +.+|+|+|+||+|+|+++ ++|+++||||+||||||||+++|.|+
T Consensus 1256 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999987655321111111111 345889999999999753 25679999999999999999999999
Q ss_pred CCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccccc
Q 047171 367 YDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK 446 (1224)
Q Consensus 367 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 446 (1224)
|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +++++++++|++.+++++++.++|+||||.
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999998332 589999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 447 VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 447 ~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ceEEeecChHHHHhhccCCCchHHHHHHH
Q 047171 527 GRVIESGSHDVLMQMNNGEGGAYSKMVQL 555 (1224)
Q Consensus 527 G~i~~~g~~~~l~~~~~~~~~~y~~~~~~ 555 (1224)
|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1495 G~IvE~G~~~eLl~~----~~~f~~l~~~ 1519 (1522)
T TIGR00957 1495 GEVAEFGAPSNLLQQ----RGIFYSMAKD 1519 (1522)
T ss_pred CEEEEECCHHHHHhC----CCHHHHHHHH
Confidence 999999999999987 7899999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-73 Score=698.73 Aligned_cols=509 Identities=23% Similarity=0.296 Sum_probs=438.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC-CChHHHHHHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 18 LLLFGTVGSIGDGMMTPLTMYILSMVINELGT-SDISISIEAV----DK-------VPEKGMCWTRTAERQASRIRMEYL 85 (1224)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~lR~~~~ 85 (1224)
.+++.++++++..++....|+++++++|.+.. .+...+...+ .. .++..++..+.+.++..++|.++|
T Consensus 7 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 86 (544)
T TIGR01842 7 TFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIF 86 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777788899999997642 2222221110 00 055677788889999999999999
Q ss_pred HHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 047171 86 KSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAE-KIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIV 164 (1224)
Q Consensus 86 ~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~ 164 (1224)
+|++++|+.. .+...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|++++
T Consensus 87 ~~ll~~~~~~---------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 87 AASFSATLRR---------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHhcCcccC---------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999832 235678899999999998877 4455555555444 4567899999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 047171 165 PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTY 243 (1224)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 243 (1224)
+..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....+. .+..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 878888888888899999999999999999999999999999999999999999999888888877777766655 5555
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccc
Q 047171 244 GAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAY 323 (1224)
Q Consensus 244 ~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 323 (1224)
+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..++++..+.+|+.++++.+++.++. ...+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCC
Confidence 66677888999999999999999999999999999999999999999999999999999999865543211 11122
Q ss_pred ccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc
Q 047171 324 LRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391 (1224)
Q Consensus 324 ~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 391 (1224)
..+.|+++||+|+|++. ++|+++|||||||||||||+++|+|+|+|++|+|.+||+++++++.+++|+
T Consensus 313 ~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 34679999999999642 256799999999999999999999999999999999999999999999999
Q ss_pred ccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccC
Q 047171 392 QMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRD 471 (1224)
Q Consensus 392 ~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~ 471 (1224)
+++||+|+|++|++|++|||+++.+++++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHh
Q 047171 472 PKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 472 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
|++||||||||+||+++++.+.+.+.+.. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999998875 6899999999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=753.60 Aligned_cols=484 Identities=24% Similarity=0.306 Sum_probs=385.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 63 PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL 142 (1224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (1224)
+++.++..+.+.+...++|.+++++++++|++|||+ + ++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~---~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT---N-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc---C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788899999999999999999999999998 5 999999999999999999999999999999999999888
Q ss_pred HHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLF-IVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKN 221 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~ 221 (1224)
++++++|.. ++.+++++++ +.+..++.+..++..+......+.+.+.+.|+++|+++||+|++++.+.+++.+..+..
T Consensus 1047 ~i~~~~~~~-~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~ 1125 (1622)
T PLN03130 1047 LIGIVSTIS-LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN 1125 (1622)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 888888743 3333333332 22333444555666666667778899999999999999999999887666655554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 222 MELGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTERG-EK-----GGLVFVAGICTILGGVGIMSALPNLSFISQAT 295 (1224)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1224)
.+..........+..... ..+..+++++.|.+.+..+. .. .+.+-.++.|+.....++..+...+..++++.
T Consensus 1126 ~~~~~~~~~~~~wl~~~l--~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130 1126 IRFTLVNMSSNRWLAIRL--ETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222111111111111 11112222223333344332 11 12222233344455556666666777889999
Q ss_pred HHHHHHHHHhccCCCCCCCccccccc--ccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHH
Q 047171 296 TAATRIFEMIDRVPVINSEDEIGKTL--AYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVIS 361 (1224)
Q Consensus 296 ~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ 361 (1224)
+|.+|+.++++.+++.+...+...++ .+.+|.|+|+||+|+|++. ++|+++||||+||||||||++
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~ 1283 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLN 1283 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998766532211111111 1345789999999999642 256799999999999999999
Q ss_pred HHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccc
Q 047171 362 LLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND 441 (1224)
Q Consensus 362 ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~ 441 (1224)
+|.|+|+|++|+|+|||+|+++++.+++|++|++|||||.||+|||||||.+++ +++++++++|++.+++++++.++|+
T Consensus 1284 lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~ 1362 (1622)
T PLN03130 1284 ALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSL 1362 (1622)
T ss_pred HHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999987 4789999999999999999999999
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEE
Q 047171 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521 (1224)
Q Consensus 442 g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i 521 (1224)
||||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|
T Consensus 1363 GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrI 1442 (1622)
T PLN03130 1363 GLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 1442 (1622)
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEeCceEEeecChHHHHhhccCCCchHHHHHHHHH
Q 047171 522 GVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 522 ~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
+||++|+|+|.|+|+||++++ ++.|+++++.+.
T Consensus 1443 lVLd~G~IvE~Gt~~eLl~~~---~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1443 LVLDAGRVVEFDTPENLLSNE---GSAFSKMVQSTG 1475 (1622)
T ss_pred EEEECCEEEEeCCHHHHHhCC---CCHHHHHHHHcC
Confidence 999999999999999999862 589999987654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=661.24 Aligned_cols=467 Identities=27% Similarity=0.443 Sum_probs=354.0
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CcEEEECCEecCCCCHHHHh----cccEEecCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPV----KGNILLDGHKIKKLQLKWLR----SQMGLVNQE 399 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~ 399 (1224)
..++||||.- .+|+++||||+|||||||+++.|.|+.++. +|+|.++|.|+..++.+..| +.|+||||+
T Consensus 23 ~~v~~vsf~v---~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~ 99 (539)
T COG1123 23 PAVRDVSFEV---EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQD 99 (539)
T ss_pred eeeecceEEe---cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecC
Confidence 3567777765 357899999999999999999999999987 89999999999988876553 479999999
Q ss_pred CC-CCcc--cHHHHHh----cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccc--cCCCCCCChHHHHHHHHHHHhcc
Q 047171 400 PI-LFST--SIKENIL----IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV--GQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 400 ~~-lf~~--ti~~ni~----~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~--~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|+ .+|. ||.+-|. ...+ .+.++. ...+.+.++.. |+.... ...+++||||||||+.||+||+.
T Consensus 100 p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea-----~~~a~elL~~V--gl~~~~~~~~yPheLSGG~rQRv~iAmALa~ 171 (539)
T COG1123 100 PMTSLNPVMTIGDQIREALRLHGK-GSRAEA-----RKRAVELLEQV--GLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171 (539)
T ss_pred chhhcCchhhHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHHc--CCCChhhhccCCcccCchHHHHHHHHHHHhC
Confidence 95 4543 5555543 2221 111111 11223444433 332222 56899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCc
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 547 (1224)
+|++||+||||++||+.++..|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.|+.++++++. ..
T Consensus 172 ~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p---~h 248 (539)
T COG1123 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNP---QH 248 (539)
T ss_pred CCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhcc---CC
Confidence 999999999999999999999999999875 68999999999999987 9999999999999999999998752 11
Q ss_pred hHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCc
Q 047171 548 AYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDK 627 (1224)
Q Consensus 548 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1224)
.|.+-.-.
T Consensus 249 pYT~~Ll~------------------------------------------------------------------------ 256 (539)
T COG1123 249 PYTRGLLA------------------------------------------------------------------------ 256 (539)
T ss_pred cccHHHHh------------------------------------------------------------------------
Confidence 11100000
Q ss_pred cCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHH
Q 047171 628 NFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLT 707 (1224)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 707 (1224)
..
T Consensus 257 ----------------------------------------------------a~-------------------------- 258 (539)
T COG1123 257 ----------------------------------------------------AV-------------------------- 258 (539)
T ss_pred ----------------------------------------------------hC--------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 708 LIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLA 787 (1224)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~ 787 (1224)
| ..+...
T Consensus 259 ---------------------------------p--~~~~~~-------------------------------------- 265 (539)
T COG1123 259 ---------------------------------P--RLGDEK-------------------------------------- 265 (539)
T ss_pred ---------------------------------C--Cccccc--------------------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhh
Q 047171 788 YTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKG 867 (1224)
Q Consensus 788 ~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~ 867 (1224)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 868 PKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIR 947 (1224)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 947 (1224)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCC--------CCccceeceeEEEeCCcEEEEEcCCCCCh
Q 047171 948 TIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSR--------PDQMIFKGLTLKIEAGKTVALVGQSGSGK 1019 (1224)
Q Consensus 948 ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIVG~SGsGK 1019 (1224)
....... .+.+....++++|++.+|..+ ....+++||||++++||++||||+|||||
T Consensus 266 ----------~~~~~~~-----~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGK 330 (539)
T COG1123 266 ----------IIRLPRR-----GPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGK 330 (539)
T ss_pred ----------ccccccc-----cccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCH
Confidence 0000000 000011258899999999742 12468999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCceEEECCcc--CCCCCHHHHhcceEEEecCCCC--C-cccHHHHHccCCC---CCC----HHHHH
Q 047171 1020 STIIGLIERFYDPQSGSVMVDERN--IKSYNLRKLRSCIALVSQEPTL--F-AGTIRQNIVYGKE---VAT----EAEIR 1087 (1224)
Q Consensus 1020 STL~~lL~rl~~p~~G~I~idG~d--i~~~~~~~lR~~i~~V~Qdp~L--F-~gTIreNl~~~~~---~~~----deei~ 1087 (1224)
|||.++|+|+.+|++|+|.++|.| .+.-+...+|+++-+|+|||+- - ..||+++|.-... ... .+.+.
T Consensus 331 STlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~ 410 (539)
T COG1123 331 STLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVA 410 (539)
T ss_pred HHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHH
Confidence 999999999999999999999977 3333355688999999999973 2 4799999963211 111 12233
Q ss_pred HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--C
Q 047171 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--G 1165 (1224)
Q Consensus 1088 ~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~ 1165 (1224)
+.++.+++.. .........||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|.++.+ |
T Consensus 411 ~ll~~VgL~~----------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g 480 (539)
T COG1123 411 ELLELVGLPP----------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480 (539)
T ss_pred HHHHHcCCCH----------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 3344444331 134566778999999999999999999999999999999999999999999988764 7
Q ss_pred CeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHh
Q 047171 1166 RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217 (1224)
Q Consensus 1166 ~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q 1217 (1224)
.|.|+|||+++.++. ||||+||++|+|+|.|+.+++.+. +...|.+.....
T Consensus 481 ~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~-p~h~Ytr~L~~a 532 (539)
T COG1123 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN-PQHPYTRKLLAA 532 (539)
T ss_pred CEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcC-CCChHHHHHHHh
Confidence 899999999999988 999999999999999999999887 577787765443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=745.03 Aligned_cols=485 Identities=21% Similarity=0.286 Sum_probs=408.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047171 65 KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVA 144 (1224)
Q Consensus 65 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1224)
..++....+.+...++|.++|+++++.|+.|||+ + ++|++++|+++|++.+++.+...+..++..++.+++.++++
T Consensus 1018 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~---~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~ 1093 (1560)
T PTZ00243 1018 RFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT---T-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVT 1093 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC---C-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666778899999999999999999998 5 99999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 047171 145 FLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224 (1224)
Q Consensus 145 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~ 224 (1224)
++.+|.+.++++.++.++..+..++.+..+...+......+.+.+.+.|.++|+++||+|++|+.+.++|.+..+...+.
T Consensus 1094 ~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~ 1173 (1560)
T PTZ00243 1094 SASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSC 1173 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99998554443333333444455566667777777778889999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 225 GIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVL--VTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRI 301 (1224)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 301 (1224)
..+......+..... ++..+..+++.+++... ...+.+++|.+..++.+......|+..+...+..++++..|++|+
T Consensus 1174 ~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi 1253 (1560)
T PTZ00243 1174 SYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERL 1253 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776555555544443 33333333333334333 234457889888888888888899999999999999999999999
Q ss_pred HHHhccCCCCCCC--------------------------ccccc---ccccccccEEEEeEEEECCCC------------
Q 047171 302 FEMIDRVPVINSE--------------------------DEIGK---TLAYLRGEIEFKDVDFSYPTR------------ 340 (1224)
Q Consensus 302 ~~~l~~~~~~~~~--------------------------~~~~~---~~~~~~~~i~~~~v~f~y~~~------------ 340 (1224)
+++++..|+.+.. +.... +.....|.|+|+||+|+|++.
T Consensus 1254 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I 1333 (1560)
T PTZ00243 1254 LYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRI 1333 (1560)
T ss_pred HHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEE
Confidence 9999744321100 00000 011135789999999999643
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
++|+++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||.||+|||||||..+. ++++
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sd 1412 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASS 1412 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCH
Confidence 256799999999999999999999999999999999999999999999999999999999999999999998754 6889
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRD-PKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~-~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+++++|++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||++|++.|++.|++.
T Consensus 1413 eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1413 AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999996 8999999999999999999999999998
Q ss_pred cCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHH
Q 047171 500 SQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 500 ~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
.+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++. ++.|+++++.+.
T Consensus 1493 ~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~---~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1493 FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR---QSIFHSMVEALG 1547 (1560)
T ss_pred CCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCC---CCHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999752 689999987653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-71 Score=682.13 Aligned_cols=536 Identities=17% Similarity=0.183 Sum_probs=441.5
Q ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSA-IEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHY 716 (1224)
Q Consensus 638 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 716 (1224)
.+++++++.+ +.++.++++++++++.++.....+++++.+++..... .. .....++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL------GQ--GSLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------cc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777 7778888888888887877777777777665421100 00 1122244456666788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 717 NFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTW 796 (1224)
Q Consensus 717 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1224)
+....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.++.++.. +..++..++.+++.++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999 678999999999999999998864 77777888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHH--HHHHHHHHHhhhHHHHHHH
Q 047171 797 RVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQD--RILDLFRETMKGPKKESIK 874 (1224)
Q Consensus 797 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~--~~~~~~~~~~~~~~~~~~~ 874 (1224)
.+++++++.+|+.+++.+...++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988888877777666666666677777788889999999999999999999954 5577888888877777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047171 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILD 954 (1224)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 954 (1224)
..........+..++..+...+.++++++. |.++.+.++++..+......|+..+...+..+.++..+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555554444444555444444455555443 78999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCC--CCCCCCC---CCCCCcccEEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 955 RKSEIDPE--DPKASED---IEEPTKGFIELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 955 ~~~~~~~~--~~~~~~~---~~~~~~g~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
.+++.++. .+..... .+....+.|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 42221110 0100000 0111246799999999997532 236999999999999999999999999999999999
Q ss_pred cccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccc
Q 047171 1028 RFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYD 1107 (1224)
Q Consensus 1028 rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gld 1107 (1224)
|+|+|++|+|.+||+|+++++.+++|+++++|+|||++|++|+++|+ .++.++++++++++.+++++++..+|+|||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999996 356789999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEccCchhhhhcCEEE
Q 047171 1108 TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE-KM-MVGRTCVVVAHRLSTIQKADNIV 1185 (1224)
Q Consensus 1108 t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~-~~-~~~~TvI~IaHrl~ti~~aD~I~ 1185 (1224)
|. .+|||||||||+||||++++|+|||||||||+||++|++.+++.+. +. .+++|+|+||||+++++.||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 95 6899999999999999999999999999999999999999998764 33 36899999999999999999999
Q ss_pred EEeCCEEEEe
Q 047171 1186 VIKNGKVVEQ 1195 (1224)
Q Consensus 1186 vl~~G~Ive~ 1195 (1224)
||++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-71 Score=742.16 Aligned_cols=484 Identities=23% Similarity=0.289 Sum_probs=389.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 63 PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL 142 (1224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (1224)
+++.++..+.+.+...++|.++++++++.|++||++ + ++|++++|+++|++.+++.+...+..++..++.++++++
T Consensus 968 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~---~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1043 (1495)
T PLN03232 968 FTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT---N-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc---C-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788999999999999999999999999998 5 999999999999999999999999999999888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLFIV-PGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKN 221 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~ 221 (1224)
++++++|... +.++++++++. +..++.+..+...+......+...+.+.|.++|+++||+|++++.+.+++.+..+..
T Consensus 1044 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~ 1122 (1495)
T PLN03232 1044 LIGTVSTISL-WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHH
Confidence 8887776433 33333333222 223333445556666778888999999999999999999999987777666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 222 MELGIKQGLTKGLLLGSMGMTYGAWAFQSWVGSVLVTE-RGEK-----GGLVFVAGICTILGGVGIMSALPNLSFISQAT 295 (1224)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1224)
.+..........+... .+..++.+++++.|.+.+.. +.+. .+.+..++.|+.....|+..+...+..++.+.
T Consensus 1123 ~~~~~~~~~~~~wl~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1123 IRFTLANTSSNRWLTI--RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322212111111 11111222222333333332 3221 12222345566666778888888899999999
Q ss_pred HHHHHHHHHhccCCCCCCCccccccc--ccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHH
Q 047171 296 TAATRIFEMIDRVPVINSEDEIGKTL--AYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVIS 361 (1224)
Q Consensus 296 ~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ 361 (1224)
+|.+|+.++++.+++.+...+...++ .+..|+|+|+||+|+|++. ++|+++||||+||||||||++
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~ 1280 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998766533211111111 1345789999999999532 257799999999999999999
Q ss_pred HHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccc
Q 047171 362 LLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND 441 (1224)
Q Consensus 362 ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~ 441 (1224)
+|.|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.+++ ++++++++++++.++++++++++|+
T Consensus 1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~ 1359 (1495)
T PLN03232 1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPF 1359 (1495)
T ss_pred HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999999999986 5899999999999999999999999
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEE
Q 047171 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLI 521 (1224)
Q Consensus 442 g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i 521 (1224)
|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|
T Consensus 1360 GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrI 1439 (1495)
T PLN03232 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKI 1439 (1495)
T ss_pred CCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCceEEeecChHHHHhhccCCCchHHHHHHHHH
Q 047171 522 GVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 522 ~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
+||++|+|+|.|+|+||++++ ++.|+++++.+.
T Consensus 1440 lVL~~G~ivE~Gt~~eLl~~~---~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1440 LVLSSGQVLEYDSPQELLSRD---TSAFFRMVHSTG 1472 (1495)
T ss_pred EEEECCEEEEECCHHHHHhCC---CCHHHHHHHHhC
Confidence 999999999999999999872 358999987654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-70 Score=672.43 Aligned_cols=513 Identities=17% Similarity=0.151 Sum_probs=427.1
Q ss_pred chHHHHhhcc-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHHH----HHH---HHHHHHHHHHHHH
Q 047171 3 TKGGLFRYAD-GKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEA----VDK---VPEKGMCWTRTAE 74 (1224)
Q Consensus 3 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~ 74 (1224)
.+++++++++ +++ ..++++++++++.++.....|++++.++|.........+... +.. .++..++.+..+.
T Consensus 4 ~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (555)
T TIGR01194 4 AIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGM 82 (555)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888 664 456677777777788778888888988875321111111111 111 1667788889999
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047171 75 RQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALA 154 (1224)
Q Consensus 75 ~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 154 (1224)
++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++.. ++.++.++++++++++++++++|.++++
T Consensus 83 ~~~~~lR~~l~~~l~~~~~~~~~~---~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li 157 (555)
T TIGR01194 83 HIIANLRIALCEKILGAPIEEIDR---R-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAI 157 (555)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHh---c-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998 5 9999999999999999999865 7788888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 155 ALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEH--QTLKRFSLALRKNMELGIKQGLTK 232 (1224)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1224)
+++++|+.+++..++.++.++...+.++..++.++.+.|.+.|++++|+|+.++ .+.++|.+..++..+...+..+..
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T TIGR01194 158 TISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888889999999999999999999999999999954 567889988888888777666555
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-
Q 047171 233 GLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV- 310 (1224)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~- 310 (1224)
....++. .+..+...+.+++|++. |.+++|.+++++.+......|+..+...+..++++.++++|+.++++.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~ 314 (555)
T TIGR01194 238 IAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEP 314 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5444433 33334444455566543 789999999999999999999999999999999999999999999863211
Q ss_pred -CC-C-Cccccc---ccccccccEEEEeEEEECCCC---------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 311 -IN-S-EDEIGK---TLAYLRGEIEFKDVDFSYPTR---------------PDTPTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 311 -~~-~-~~~~~~---~~~~~~~~i~~~~v~f~y~~~---------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
.. + ++.... +.....+.|+++||+|+|++. ++|+++|||||||||||||+++|+|+|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 315 EPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred cccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 11 0 100000 111224679999999999742 24569999999999999999999999999
Q ss_pred CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccC
Q 047171 370 VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449 (1224)
Q Consensus 370 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 449 (1224)
++|+|.+||+|+++++.+++|++++||+||+++|++|+++|+ .+++++++++++++.+++++++..+|+||||.
T Consensus 395 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 395 QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 999999999999999999999999999999999999999995 45678899999999999999999999999994
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-HH-cCCCeEEEEeCCcchhhccCEEEEEeCc
Q 047171 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD-QA-SQGRTMIIIAHRLSTIRKADLIGVLQSG 527 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~i~H~l~~~~~ad~i~vl~~G 527 (1224)
.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.||+|++|++|
T Consensus 469 --~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 469 --TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999988764 33 4689999999999999999999999999
Q ss_pred eEEee
Q 047171 528 RVIES 532 (1224)
Q Consensus 528 ~i~~~ 532 (1224)
+++|.
T Consensus 547 ~i~~~ 551 (555)
T TIGR01194 547 CIVKD 551 (555)
T ss_pred EEEEe
Confidence 99874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=676.76 Aligned_cols=451 Identities=22% Similarity=0.388 Sum_probs=346.0
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEecCCCCHHH-HhcccE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKW-LRSQMG 394 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~~i~ 394 (1224)
|+++||+++|++. .++++++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.+|
T Consensus 6 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA 85 (506)
T ss_pred EEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence 5666666666432 25679999999999999999999999996 8999999999998776543 467899
Q ss_pred EecCCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 395 LVNQEPILFST-SIKENILIGKPG-----ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 395 ~v~Q~~~lf~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
||+|++.+|.. |++||+.++... .+.++.. ..+.++++.+ |++........+||||||||++|||||
T Consensus 86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 99999988865 999999987421 1122211 1234556666 565566778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCC
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEG 546 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~ 546 (1224)
+.+|++||||||||+||+.+...+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~----- 233 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED----- 233 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-----
Confidence 99999999999999999999999999998864 58899999999999876 999999999999887654332100
Q ss_pred chHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccC
Q 047171 547 GAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQND 626 (1224)
Q Consensus 547 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1224)
+..
T Consensus 234 ----~~~------------------------------------------------------------------------- 236 (506)
T PRK13549 234 ----DII------------------------------------------------------------------------- 236 (506)
T ss_pred ----HHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred ccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 047171 627 KNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFL 706 (1224)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 706 (1224)
..+
T Consensus 237 ----------------------------------------------------~~~------------------------- 239 (506)
T PRK13549 237 ----------------------------------------------------TMM------------------------- 239 (506)
T ss_pred ----------------------------------------------------HHh-------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 707 TLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASL 786 (1224)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~ 786 (1224)
+.. .
T Consensus 240 --------------------------------------~~~-~------------------------------------- 243 (506)
T PRK13549 240 --------------------------------------VGR-E------------------------------------- 243 (506)
T ss_pred --------------------------------------hCc-C-------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhh
Q 047171 787 AYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMK 866 (1224)
Q Consensus 787 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 866 (1224)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 867 GPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAI 946 (1224)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 946 (1224)
..
T Consensus 244 -------------------------------------------~~----------------------------------- 245 (506)
T PRK13549 244 -------------------------------------------LT----------------------------------- 245 (506)
T ss_pred -------------------------------------------cc-----------------------------------
Confidence 00
Q ss_pred HHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHH
Q 047171 947 RTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI 1026 (1224)
Q Consensus 947 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL 1026 (1224)
.. .+.. .. .+....|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|
T Consensus 246 ----~~--~~~~-~~----------~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i 308 (506)
T PRK13549 246 ----AL--YPRE-PH----------TIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCL 308 (506)
T ss_pred ----cc--cccc-cc----------CCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHH
Confidence 00 0000 00 0011248999999999532234699999999999999999999999999999999
Q ss_pred hcccC-CCCceEEECCccCCCCCH-HHHhcceEEEecCC---CCC-cccHHHHHccCCC-C------CCHHHHHHHHHHH
Q 047171 1027 ERFYD-PQSGSVMVDERNIKSYNL-RKLRSCIALVSQEP---TLF-AGTIRQNIVYGKE-V------ATEAEIRKAAVLA 1093 (1224)
Q Consensus 1027 ~rl~~-p~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp---~LF-~gTIreNl~~~~~-~------~~deei~~al~~a 1093 (1224)
+|+++ |++|+|.++|.++...+. +.+|++++||||+| .+| ..|+.||+.++.. . .+.++. ..
T Consensus 309 ~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~ 383 (506)
T PRK13549 309 FGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LK 383 (506)
T ss_pred hCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HH
Confidence 99998 599999999998865543 44678899999996 355 4699999986421 0 111111 12
Q ss_pred hHHHHHHhccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEE
Q 047171 1094 NAHEFISSTEDGYDT-YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVV 1171 (1224)
Q Consensus 1094 ~l~~~I~~lp~gldt-~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~I 1171 (1224)
.+.+.+..+ |++. .......+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|||+|
T Consensus 384 ~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~ 461 (506)
T PRK13549 384 TILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI 461 (506)
T ss_pred HHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 233444444 3432 2345567899999999999999999999999999999999999999999998865 58899999
Q ss_pred ccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1172 AHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1172 aHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
||+++.+.. ||++++|++|+++..|+++++.
T Consensus 462 sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 462 SSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 999999866 9999999999999999988763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=683.49 Aligned_cols=488 Identities=25% Similarity=0.399 Sum_probs=352.5
Q ss_pred cEEEEeEEEECCCC--------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC----------
Q 047171 327 EIEFKDVDFSYPTR--------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK---------- 382 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~--------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~---------- 382 (1224)
-|+++|++++|+.. ++++++||||+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 36666666666420 256799999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cccEEecCCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhcccccc---ccccC
Q 047171 383 KLQLK---WLR-SQMGLVNQEP--ILFS-TSIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYE---TKVGQ 449 (1224)
Q Consensus 383 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~ 449 (1224)
+.+.. .+| +.||||+|+| .+++ .||.|||.++.. ..+.++.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 22322 233 4799999998 5776 499999987521 12222211 1233455555 442 34677
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeC
Q 047171 450 FGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQS 526 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~ 526 (1224)
...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.++++. + |+|+|+|||+++.+.. ||+|++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 889999999999999999999999999999999999999999999998874 3 8999999999999876 999999999
Q ss_pred ceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047171 527 GRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSP 606 (1224)
Q Consensus 527 G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1224)
|++++.|+++++.... ...|.+-.. .. . + .. . .
T Consensus 245 G~i~~~g~~~~~~~~~---~~~~~~~l~----~~--------~-~----~~------~-------~-------------- 277 (623)
T PRK10261 245 GEAVETGSVEQIFHAP---QHPYTRALL----AA--------V-P----QL------G-------A-------------- 277 (623)
T ss_pred CeecccCCHHHhhcCC---CChhhhhhh----hc--------c-C----cc------c-------c--------------
Confidence 9999999988875431 011110000 00 0 0 00 0 0
Q ss_pred CccccccCcccccccccccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc
Q 047171 607 TFSISMTGSFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDD 686 (1224)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1224)
+.+ . .
T Consensus 278 -----~~~------------~---~------------------------------------------------------- 282 (623)
T PRK10261 278 -----MKG------------L---D------------------------------------------------------- 282 (623)
T ss_pred -----ccc------------c---c-------------------------------------------------------
Confidence 000 0 0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHH
Q 047171 687 SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLV 766 (1224)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i 766 (1224)
.+ .-+....
T Consensus 283 -----------------------------------------------------~~-~~~~~~~----------------- 291 (623)
T PRK10261 283 -----------------------------------------------------YP-RRFPLIS----------------- 291 (623)
T ss_pred -----------------------------------------------------CC-ccccccc-----------------
Confidence 00 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHH
Q 047171 767 RSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHR 846 (1224)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 846 (1224)
T Consensus 292 -------------------------------------------------------------------------------- 291 (623)
T PRK10261 292 -------------------------------------------------------------------------------- 291 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Q 047171 847 TITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTG 926 (1224)
Q Consensus 847 tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~ 926 (1224)
T Consensus 292 -------------------------------------------------------------------------------- 291 (623)
T PRK10261 292 -------------------------------------------------------------------------------- 291 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCC--------Ccccee
Q 047171 927 KNIADAGSMTSDIAKGSSAIRTIFTILDRKS-EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRP--------DQMIFK 997 (1224)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~-~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~--------~~~vL~ 997 (1224)
...+. ......... . ......|+++||++.|+.+. ..++|+
T Consensus 292 --------------------------~~~~~~~~~~~~~~~---~-~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~ 341 (623)
T PRK10261 292 --------------------------LEHPAKQEPPIEQDT---V-VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVE 341 (623)
T ss_pred --------------------------cccccccCccccccc---c-cCCCceEEEeeeEEEEcCCCccccccCCceEEEe
Confidence 00000 000000000 0 00112599999999996321 236899
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH---HHhcceEEEecCCC--CCc-ccHH
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---KLRSCIALVSQEPT--LFA-GTIR 1071 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~~i~~V~Qdp~--LF~-gTIr 1071 (1224)
|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+|++|+||||+|. ++. .|+.
T Consensus 342 ~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~ 421 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVG 421 (623)
T ss_pred eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999877643 46789999999983 664 6999
Q ss_pred HHHccCC---CCCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccC
Q 047171 1072 QNIVYGK---EVATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT 1144 (1224)
Q Consensus 1072 eNl~~~~---~~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaT 1144 (1224)
+|+.++. ...+. +++.+.++..++. +........+||||||||++|||||+.+|+||||||||
T Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~----------~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPt 491 (623)
T PRK10261 422 DSIMEPLRVHGLLPGKAAAARVAWLLERVGLL----------PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491 (623)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC----------HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9997531 11112 2233333333331 11233445679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHH-HHH
Q 047171 1145 SALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS-LIK 1215 (1224)
Q Consensus 1145 SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~-l~~ 1215 (1224)
|+||+.+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++... +...|.+ ++.
T Consensus 492 s~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~-p~~~~~~~l~~ 565 (623)
T PRK10261 492 SALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN-PQHPYTRKLMA 565 (623)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC-CCCHHHHHHHh
Confidence 99999999999999988753 7899999999999876 999999999999999999999875 3455544 443
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=603.37 Aligned_cols=530 Identities=23% Similarity=0.275 Sum_probs=452.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 659 GSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIF 738 (1224)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 738 (1224)
++.+..++....+.++-++.|...... .........++.+++.++..++.+++.+...+.+.++..++...+|...+
T Consensus 31 fS~~INiL~L~~~lyMLQVyDRVL~S~---s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~ 107 (580)
T COG4618 31 FSAVINLLALTGPLYMLQVYDRVLPSR---SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASF 107 (580)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 333444555556666777766554321 11223334445566677788899999999999999999999999999998
Q ss_pred cCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 739 TFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSV 818 (1224)
Q Consensus 739 ~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~ 818 (1224)
+.+..-- ..|+= ..--+|.+.++.++...-...+...--..+.+.++|.+.++++++.++...+++.+.++...
T Consensus 108 ~~~l~~~-----~~g~~-~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~ 181 (580)
T COG4618 108 SAPLLRR-----GSGDG-LQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNER 181 (580)
T ss_pred hhHHhhc-----CCCcc-ccchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665422 12211 12347899999998774444444444444556677788888888888888888777787777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 819 LMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTF 898 (1224)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1224)
..++..++..+...+.+++..-+..+.++|++.|......++|.+....+.....+.+-..+....++-.+-.+....++
T Consensus 182 ~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iL 261 (580)
T COG4618 182 ATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVL 261 (580)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888999999999999999999999999999999999988888888888888888888888999999
Q ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccE
Q 047171 899 WYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFI 978 (1224)
Q Consensus 899 ~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I 978 (1224)
..|++++..|++|+|.+++....+-....|+...+..|.++..+..+.+|+.+++...++..+.- +.+..+|.+
T Consensus 262 g~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m------~LP~P~g~L 335 (580)
T COG4618 262 GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM------PLPAPQGAL 335 (580)
T ss_pred hcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC------CCCCCCcee
Confidence 99999999999999999999888888899999999999999999999999999998765433211 122346899
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
.++++++.=|.. ++|+|+|+||+++|||-+|||||||||||||.++|.|.++|.+|.|.+||-|+++++.+.+=++|||
T Consensus 336 ~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY 414 (580)
T COG4618 336 SVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY 414 (580)
T ss_pred eEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence 999999975543 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 047171 1059 VSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138 (1224)
Q Consensus 1059 V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~IL 1138 (1224)
.|||..||+|||+|||+-+.++.+++.|.+|++.++.||.|.++|+||||.||++|..|||||||||+||||++.+|.++
T Consensus 415 LPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 415 LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred CcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 99999999999999999777888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1139 LLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1139 lLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+||||-|+||.+.|+.+.++|.+.. +|+|+|+||||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999998876 69999999999999999999999999999999999999875
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-70 Score=670.85 Aligned_cols=440 Identities=27% Similarity=0.459 Sum_probs=334.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCCCCHHH---Hh-cccEEecCCCC--CCc-ccHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKLQLKW---LR-SQMGLVNQEPI--LFS-TSIKE 409 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~---~r-~~i~~v~Q~~~--lf~-~ti~~ 409 (1224)
+++++||+||||||||||+++|+|+++| ++|+|.++|+++...+... .| ++||||+|++. +++ .|+.+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~ 113 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEK 113 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHH
Confidence 5679999999999999999999999987 7999999999998776432 33 57999999985 444 48999
Q ss_pred HHhcCC---CCCCHHHHHHHHHHhcHHHHHHhccccccc---cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 410 NILIGK---PGASMETVVKAAQAANVHDFIMKLNDGYET---KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 410 ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
|+.++. ...+.++. ...+++.++.+ |++. .......+||||||||++|||||+.+|++||||||||+
T Consensus 114 ~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~ 186 (529)
T PRK15134 114 QLYEVLSLHRGMRREAA-----RGEILNCLDRV--GIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTA 186 (529)
T ss_pred HHHHHHHHhcCCCHHHH-----HHHHHHHHHHC--CCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 986421 11122221 11233445555 4432 34667889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhh
Q 047171 484 LDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAM 560 (1224)
Q Consensus 484 lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~ 560 (1224)
||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++.... ...+.
T Consensus 187 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~---~~~~~---------- 253 (529)
T PRK15134 187 LDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAP---THPYT---------- 253 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCC---CCHHH----------
Confidence 99999999999998864 37999999999999876 9999999999999988877654210 00000
Q ss_pred hhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCCCCCchHHH
Q 047171 561 RNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSPSSLL 640 (1224)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1224)
T Consensus 254 -------------------------------------------------------------------------------- 253 (529)
T PRK15134 254 -------------------------------------------------------------------------------- 253 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAI 720 (1224)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 720 (1224)
..+
T Consensus 254 --------------------------------------~~~--------------------------------------- 256 (529)
T PRK15134 254 --------------------------------------QKL--------------------------------------- 256 (529)
T ss_pred --------------------------------------HHH---------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 721 MGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAI 800 (1224)
Q Consensus 721 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 800 (1224)
+. .+ .
T Consensus 257 -------------~~----~~-------~--------------------------------------------------- 261 (529)
T PRK15134 257 -------------LN----SE-------P--------------------------------------------------- 261 (529)
T ss_pred -------------HH----hC-------c---------------------------------------------------
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 801 VMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 801 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
...+. .
T Consensus 262 -------------------------------------------------------------------------~~~~~-~ 267 (529)
T PRK15134 262 -------------------------------------------------------------------------SGDPV-P 267 (529)
T ss_pred -------------------------------------------------------------------------ccccc-c
Confidence 00000 0
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCC--------CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSR--------PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
. .. . ....|+++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|++ |
T Consensus 268 ~-~~-----~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~ 337 (529)
T PRK15134 268 L-PE-----P---ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N 337 (529)
T ss_pred c-CC-----C---CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C
Confidence 0 00 0 01148999999999621 1246999999999999999999999999999999999998 4
Q ss_pred CCceEEECCccCCCCCHHH---HhcceEEEecCC--CCCc-ccHHHHHccCCC----CCCHHHHHHHHHHHhHHHHHHhc
Q 047171 1033 QSGSVMVDERNIKSYNLRK---LRSCIALVSQEP--TLFA-GTIRQNIVYGKE----VATEAEIRKAAVLANAHEFISST 1102 (1224)
Q Consensus 1033 ~~G~I~idG~di~~~~~~~---lR~~i~~V~Qdp--~LF~-gTIreNl~~~~~----~~~deei~~al~~a~l~~~I~~l 1102 (1224)
++|+|.+||.++...+... +|++++||||++ .+|. .|++||+.++.. ..+..+.. ..+.+++..+
T Consensus 338 ~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 412 (529)
T PRK15134 338 SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV 412 (529)
T ss_pred CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc
Confidence 8999999999987766543 578899999998 3665 599999986421 11111111 1122233332
Q ss_pred ccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh
Q 047171 1103 EDGYD-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ 1179 (1224)
Q Consensus 1103 p~gld-t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~ 1179 (1224)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.
T Consensus 413 --~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~ 490 (529)
T PRK15134 413 --GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVR 490 (529)
T ss_pred --CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 332 123455678999999999999999999999999999999999999999999998753 789999999999987
Q ss_pred h-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1180 K-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1180 ~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
. ||+|++|++|+|++.|++++++..
T Consensus 491 ~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 491 ALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred HhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 6 999999999999999999999865
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-70 Score=665.10 Aligned_cols=434 Identities=20% Similarity=0.364 Sum_probs=333.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-cHHHHHhcCCCCC-
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-SIKENILIGKPGA- 418 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~- 418 (1224)
+++++||+||||||||||+++|+|+++|++|+|.++|+++...+... .+++|+||+|++.++.. |++||+.++....
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 57799999999999999999999999999999999999998877654 34679999999988865 9999998764210
Q ss_pred --------CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 047171 419 --------SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490 (1224)
Q Consensus 419 --------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~ 490 (1224)
+.++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+..
T Consensus 110 ~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~ 182 (510)
T PRK09700 110 KVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182 (510)
T ss_pred ccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 111111 2234556665 5655567778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCC
Q 047171 491 IVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGS 568 (1224)
Q Consensus 491 ~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 568 (1224)
.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++... +..+ .
T Consensus 183 ~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~---------~~~~---------~---- 240 (510)
T PRK09700 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND---------DIVR---------L---- 240 (510)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH---------HHHH---------H----
Confidence 9999998864 58999999999999976 999999999999887765543210 0000 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCCCCCchHHHHHHHHhhH
Q 047171 569 YNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAI 648 (1224)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1224)
T Consensus 241 -------------------------------------------------------------------------------- 240 (510)
T PRK09700 241 -------------------------------------------------------------------------------- 240 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 649 EWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQR 728 (1224)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1224)
.
T Consensus 241 --------------------------------~----------------------------------------------- 241 (510)
T PRK09700 241 --------------------------------M----------------------------------------------- 241 (510)
T ss_pred --------------------------------h-----------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 729 VREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPL 808 (1224)
Q Consensus 729 lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl 808 (1224)
+. ..
T Consensus 242 ----------------~~--~~---------------------------------------------------------- 245 (510)
T PRK09700 242 ----------------VG--RE---------------------------------------------------------- 245 (510)
T ss_pred ----------------cC--CC----------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 047171 809 NIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQF 888 (1224)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1224)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCC
Q 047171 889 LTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASE 968 (1224)
Q Consensus 889 ~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~ 968 (1224)
.. . ......+ ....
T Consensus 246 ---------------------~~-----------------------------------~---~~~~~~~--~~~~----- 259 (510)
T PRK09700 246 ---------------------LQ-----------------------------------N---RFNAMKE--NVSN----- 259 (510)
T ss_pred ---------------------cc-----------------------------------c---ccccccc--cccc-----
Confidence 00 0 0000000 0000
Q ss_pred CCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC
Q 047171 969 DIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN 1048 (1224)
Q Consensus 969 ~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~ 1048 (1224)
. .....|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 260 -~--~~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 260 -L--AHETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331 (510)
T ss_pred -C--CCCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC
Confidence 0 0112599999998762 2899999999999999999999999999999999999999999999999887654
Q ss_pred H-HHHhcceEEEecCC---CCCc-ccHHHHHccCCCC-----------CCHHHHHHHHHHHhHHHHHHhcccccc-cccC
Q 047171 1049 L-RKLRSCIALVSQEP---TLFA-GTIRQNIVYGKEV-----------ATEAEIRKAAVLANAHEFISSTEDGYD-TYCG 1111 (1224)
Q Consensus 1049 ~-~~lR~~i~~V~Qdp---~LF~-gTIreNl~~~~~~-----------~~deei~~al~~a~l~~~I~~lp~gld-t~vg 1111 (1224)
. ..+|++++||||++ .+|. .|++||+.++... .+..+. ...+.+.++.+ |+. ....
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~ 404 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVN 404 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCcc
Confidence 4 45678999999984 4665 5999999875310 011111 11223334333 332 2234
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeC
Q 047171 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKN 1189 (1224)
Q Consensus 1112 e~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~ 1189 (1224)
.....||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 4556799999999999999999999999999999999999999999998864 57899999999998865 999999999
Q ss_pred CEEEEecChhH
Q 047171 1190 GKVVEQGTQSS 1200 (1224)
Q Consensus 1190 G~Ive~Gt~~e 1200 (1224)
|++++.++..+
T Consensus 485 G~i~~~~~~~~ 495 (510)
T PRK09700 485 GRLTQILTNRD 495 (510)
T ss_pred CEEEEEecCcc
Confidence 99999887633
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=662.29 Aligned_cols=438 Identities=21% Similarity=0.365 Sum_probs=336.0
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-cH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-ti 407 (1224)
++|+||+. .+++++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++||+|++.++.. |+
T Consensus 20 l~~is~~i---~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 20 LSGAALNV---YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred eeeeeEEE---cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 44444443 256799999999999999999999999999999999999987665443 45689999999988865 99
Q ss_pred HHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 408 KENILIGKPG------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 408 ~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
+||+.++... .+.++.. ..+.+.++.+ |+.........+||||||||++|||||+.+|++|||||||
T Consensus 97 ~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 169 (501)
T PRK10762 97 AENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169 (501)
T ss_pred HHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999986421 1111111 1234556665 5555566778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHh
Q 047171 482 SALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSA 559 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~ 559 (1224)
++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++... .+.
T Consensus 170 ~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---------~~~------ 234 (501)
T PRK10762 170 DALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED---------SLI------ 234 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH---------HHH------
Confidence 9999999999999998763 57899999999999876 999999999999886643322100 000
Q ss_pred hhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCCCCCchHH
Q 047171 560 MRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSPSSL 639 (1224)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1224)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T PRK10762 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 640 LRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFA 719 (1224)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 719 (1224)
..+
T Consensus 235 ---------------------------------------~~~-------------------------------------- 237 (501)
T PRK10762 235 ---------------------------------------EMM-------------------------------------- 237 (501)
T ss_pred ---------------------------------------HHh--------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 720 IMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVA 799 (1224)
Q Consensus 720 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 799 (1224)
+.. .
T Consensus 238 -------------------------~~~-~-------------------------------------------------- 241 (501)
T PRK10762 238 -------------------------VGR-K-------------------------------------------------- 241 (501)
T ss_pred -------------------------cCC-C--------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 047171 800 IVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFS 879 (1224)
Q Consensus 800 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1224)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 047171 880 GIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEI 959 (1224)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 959 (1224)
. ....+..
T Consensus 242 ---------------------------------------------------------------------~---~~~~~~~ 249 (501)
T PRK10762 242 ---------------------------------------------------------------------L---EDQYPRL 249 (501)
T ss_pred ---------------------------------------------------------------------c---ccccccc
Confidence 0 0000000
Q ss_pred CCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE
Q 047171 960 DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039 (1224)
Q Consensus 960 ~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1039 (1224)
.. ++....|+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+
T Consensus 250 ~~----------~~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~ 311 (501)
T PRK10762 250 DK----------APGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred cc----------CCCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 00 00012589999974 2699999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCH-HHHhcceEEEecCC---CCC-cccHHHHHccCCC-C-------CCHHHHHHHHHHHhHHHHHHhccccc
Q 047171 1040 DERNIKSYNL-RKLRSCIALVSQEP---TLF-AGTIRQNIVYGKE-V-------ATEAEIRKAAVLANAHEFISSTEDGY 1106 (1224)
Q Consensus 1040 dG~di~~~~~-~~lR~~i~~V~Qdp---~LF-~gTIreNl~~~~~-~-------~~deei~~al~~a~l~~~I~~lp~gl 1106 (1224)
+|.++...+. +.+|++++||||+| .+| ..|++||+.++.. . .+.++. ...+.+++..+ |+
T Consensus 312 ~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l 384 (501)
T PRK10762 312 DGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NI 384 (501)
T ss_pred CCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CC
Confidence 9999877665 34678899999997 344 4799999986421 0 111111 11233444433 34
Q ss_pred c-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCE
Q 047171 1107 D-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADN 1183 (1224)
Q Consensus 1107 d-t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~ 1183 (1224)
. .........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+
T Consensus 385 ~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 385 KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred CCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 2 23455667899999999999999999999999999999999999999999999875 57899999999999866 999
Q ss_pred EEEEeCCEEEEecChhHHh
Q 047171 1184 IVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1184 I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|++|++|++++.|+.+++.
T Consensus 465 v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 465 ILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEEEECCEEEEEeccccCC
Confidence 9999999999999887763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-70 Score=667.24 Aligned_cols=220 Identities=25% Similarity=0.431 Sum_probs=176.3
Q ss_pred cEEEEEEEEECCC--CCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC-Ccc---CCCCC--
Q 047171 977 FIELKNVFFSYPS--RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD-ERN---IKSYN-- 1048 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~--~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id-G~d---i~~~~-- 1048 (1224)
.|+++|++++|++ +.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 123469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEecCCCCCc-ccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhccccccc-----ccCCCCCCCChH
Q 047171 1049 -LRKLRSCIALVSQEPTLFA-GTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDT-----YCGERGVQLSGG 1120 (1224)
Q Consensus 1049 -~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt-----~vge~G~~LSGG 1120 (1224)
...+|++++||||++.+|. .|++||+.++.. ....++.. ..+.+++..+ |++. .......+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2346788999999998886 599999975311 11111111 1122233322 2321 234455679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988752 7899999999999876 99999999999999999
Q ss_pred hhHHhh
Q 047171 1198 QSSLLS 1203 (1224)
Q Consensus 1198 ~~eLl~ 1203 (1224)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=582.33 Aligned_cols=454 Identities=30% Similarity=0.485 Sum_probs=349.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCCCCHHHHhc----ccEEecCC
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKLQLKWLRS----QMGLVNQE 399 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~~r~----~i~~v~Q~ 399 (1224)
.++++||.- ..|+++||||+||||||-..+.++|+++- -+|+|.++|.|+-..+...+|+ +|++++||
T Consensus 25 aVk~isf~i---~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 25 AVKGISFDI---EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred eeccceeee---cCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 456777764 35789999999999999999999999874 4799999999999998888774 89999999
Q ss_pred CC--CCcc-cH----HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 400 PI--LFST-SI----KENILIGKPGASMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 400 ~~--lf~~-ti----~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|. |-+- || .|-|.+.+. .+ .++..+.+.+.++.. |+ -...+...+++|||||||||.||.||+.
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg-~~-----~~~Ar~r~lelL~~VgI~~-p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRG-LS-----RAAARARALELLELVGIPE-PEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhc-cc-----HHHHHHHHHHHHHHcCCCc-hhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 95 2221 44 444444321 11 111222223333332 21 1235677899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCc
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 547 (1224)
+|++||-||||.|||...+..|.+.|+++. .|..+++|||+|..+++ ||||+||.+|+++|+|+.+++.+.+ ..
T Consensus 175 ~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~P---qH 251 (534)
T COG4172 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAP---QH 251 (534)
T ss_pred CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCC---CC
Confidence 999999999999999999999999998864 48999999999999987 9999999999999999988887652 12
Q ss_pred hHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCc
Q 047171 548 AYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDK 627 (1224)
Q Consensus 548 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1224)
.|.+..-.
T Consensus 252 pYTr~Ll~------------------------------------------------------------------------ 259 (534)
T COG4172 252 PYTRKLLA------------------------------------------------------------------------ 259 (534)
T ss_pred hHHHHHHh------------------------------------------------------------------------
Confidence 22211100
Q ss_pred cCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHH
Q 047171 628 NFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLT 707 (1224)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 707 (1224)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 708 LIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLA 787 (1224)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~ 787 (1224)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhh
Q 047171 788 YTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKG 867 (1224)
Q Consensus 788 ~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~ 867 (1224)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 868 PKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIR 947 (1224)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 947 (1224)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCC--------CccceeceeEEEeCCcEEEEEcCCCCCh
Q 047171 948 TIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRP--------DQMIFKGLTLKIEAGKTVALVGQSGSGK 1019 (1224)
Q Consensus 948 ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIVG~SGsGK 1019 (1224)
.+|.-.+ . + .+....-.++.+||...||-++ ...+++++||+.++||++||||+|||||
T Consensus 260 -------aeP~g~~---~-p--~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGK 326 (534)
T COG4172 260 -------AEPSGDP---P-P--LPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326 (534)
T ss_pred -------cCCCCCC---C-C--CCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCc
Confidence 0000000 0 0 0001112456666666665221 1247899999999999999999999999
Q ss_pred HHHHHHHhcccCCCCceEEECCccCCCCCHHH---HhcceEEEecCCC--CC-cccHHHHHccC----CCCCC----HHH
Q 047171 1020 STIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LRSCIALVSQEPT--LF-AGTIRQNIVYG----KEVAT----EAE 1085 (1224)
Q Consensus 1020 STL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR~~i~~V~Qdp~--LF-~gTIreNl~~~----~~~~~----dee 1085 (1224)
||+-.+|+|+.++. |+|..+|.++..++.+. +|+++-+|+|||+ |- ..||.+-|.-| .|..+ ++.
T Consensus 327 sTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~r 405 (534)
T COG4172 327 STLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQR 405 (534)
T ss_pred chHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHH
Confidence 99999999999865 99999999999998777 7899999999997 22 35777766544 23333 455
Q ss_pred HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--
Q 047171 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-- 1163 (1224)
Q Consensus 1086 i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-- 1163 (1224)
+.+|++.++++.-. ...-+..+|||||||||||||++-+|++++||||||+||-.-...|.+.|+++-
T Consensus 406 v~~aL~EVGLDp~~----------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 406 VIEALEEVGLDPAT----------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred HHHHHHHcCCChhH----------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 77777777765432 124456799999999999999999999999999999999999999999998775
Q ss_pred CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHH
Q 047171 1164 VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1164 ~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
.+-+-++|+|+|..++. ||+|+||.+|+|||+|..++++++ +...|.+
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~-P~~~YT~ 524 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN-PQHEYTR 524 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcC-CCcHHHH
Confidence 36799999999999987 999999999999999999999998 5666654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-69 Score=657.64 Aligned_cols=446 Identities=22% Similarity=0.380 Sum_probs=334.3
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST 405 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~ 405 (1224)
.++||+|+.+ ++++++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.||||+|++.+|..
T Consensus 16 il~~isl~i~---~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 16 ALDGIDLEVR---PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eecceEEEEe---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 3555555543 5679999999999999999999999987 7999999999998776544 46689999999988865
Q ss_pred -cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhccccccccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 406 -SIKENILIGKPG------ASMETVVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 406 -ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
|++||+.++... ...++.. ..+++.++.+ |++... .....+||||||||++|||||+.+|++|||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999886421 1112211 2234556665 444332 345788999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHH
Q 047171 478 DEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~ 555 (1224)
||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-------------- 231 (500)
T TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED-------------- 231 (500)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH--------------
Confidence 99999999999999999998763 58899999999999976 999999999999865422110000
Q ss_pred HHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCCCCC
Q 047171 556 QQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHS 635 (1224)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1224)
T Consensus 232 -------------------------------------------------------------------------------- 231 (500)
T TIGR02633 232 -------------------------------------------------------------------------------- 231 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 636 PSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQH 715 (1224)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 715 (1224)
.. +..+
T Consensus 232 -----~~-----------------------------------~~~~---------------------------------- 237 (500)
T TIGR02633 232 -----DI-----------------------------------ITMM---------------------------------- 237 (500)
T ss_pred -----HH-----------------------------------HHHH----------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 716 YNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVT 795 (1224)
Q Consensus 716 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1224)
+.. .
T Consensus 238 -----------------------------~~~-~---------------------------------------------- 241 (500)
T TIGR02633 238 -----------------------------VGR-E---------------------------------------------- 241 (500)
T ss_pred -----------------------------hCc-c----------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHH
Q 047171 796 WRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQ 875 (1224)
Q Consensus 796 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 875 (1224)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047171 876 SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDR 955 (1224)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 955 (1224)
.. .. .
T Consensus 242 ----------------------------------~~---------------------------------------~~--~ 246 (500)
T TIGR02633 242 ----------------------------------IT---------------------------------------SL--Y 246 (500)
T ss_pred ----------------------------------cc---------------------------------------cc--c
Confidence 00 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CC
Q 047171 956 KSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QS 1034 (1224)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~ 1034 (1224)
+.. . .+ ..+..|+++|++++|+..++.++|+|+||+|++||++||+||||||||||+++|+|+++| ++
T Consensus 247 ~~~--~-~~--------~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~ 315 (500)
T TIGR02633 247 PHE--P-HE--------IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE 315 (500)
T ss_pred ccc--c-cC--------CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC
Confidence 000 0 00 011258999999999532234599999999999999999999999999999999999995 89
Q ss_pred ceEEECCccCCCCCH-HHHhcceEEEecCC---CCCc-ccHHHHHccCCC--C-----CCHHHHHHHHHHHhHHHHHHhc
Q 047171 1035 GSVMVDERNIKSYNL-RKLRSCIALVSQEP---TLFA-GTIRQNIVYGKE--V-----ATEAEIRKAAVLANAHEFISST 1102 (1224)
Q Consensus 1035 G~I~idG~di~~~~~-~~lR~~i~~V~Qdp---~LF~-gTIreNl~~~~~--~-----~~deei~~al~~a~l~~~I~~l 1102 (1224)
|+|.++|.++...+. ..+|++++||||++ .+|. .|+++|+.++.. . ...++. ...+.++++.+
T Consensus 316 G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~ 390 (500)
T TIGR02633 316 GNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL 390 (500)
T ss_pred eEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc
Confidence 999999999865443 56788999999996 3555 699999987521 0 011111 11223334333
Q ss_pred cccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh
Q 047171 1103 EDGYDT-YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK 1180 (1224)
Q Consensus 1103 p~gldt-~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~ 1180 (1224)
|+.. ........||||||||++||||++++|++|||||||++||+.+.+.+++.|+++. ++.|+|+|||+++.+..
T Consensus 391 --~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~ 468 (500)
T TIGR02633 391 --KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLG 468 (500)
T ss_pred --CccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 2321 2334456799999999999999999999999999999999999999999998865 57899999999999876
Q ss_pred -cCEEEEEeCCEEEEecChhHH
Q 047171 1181 -ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1181 -aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||+|++|++|+++..++.+++
T Consensus 469 ~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 469 LSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred hCCEEEEEECCEEEEEEccccC
Confidence 999999999999987765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=657.24 Aligned_cols=445 Identities=23% Similarity=0.375 Sum_probs=336.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 396 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|++||||
T Consensus 5 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred EEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4555555555421 3567999999999999999999999999999999999999875543 4567889999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 397 NQEPILFST-SIKENILIGKPG-----ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
+|++.+|+. |++||+.++... ...++.. ..+.++++.+ |++........+||||||||++|||||+.
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence 999988875 999999986421 1122211 2234566666 55545567788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCch
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGA 548 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 548 (1224)
+|++|||||||++||+.+.+.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.++..+-..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-------- 229 (501)
T PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD-------- 229 (501)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC--------
Confidence 999999999999999999999999998764 58999999999999876 99999999999976431100000
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCcc
Q 047171 549 YSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKN 628 (1224)
Q Consensus 549 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1224)
. +
T Consensus 230 -------------------------------------------------------------------------~----~- 231 (501)
T PRK11288 230 -------------------------------------------------------------------------R----D- 231 (501)
T ss_pred -------------------------------------------------------------------------H----H-
Confidence 0 0
Q ss_pred CCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHH
Q 047171 629 FHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTL 708 (1224)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 708 (1224)
.+ ..
T Consensus 232 ------------~~-----------------------------------~~----------------------------- 235 (501)
T PRK11288 232 ------------QL-----------------------------------VQ----------------------------- 235 (501)
T ss_pred ------------HH-----------------------------------HH-----------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 709 IANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAY 788 (1224)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 788 (1224)
.+ ... .
T Consensus 236 ---------------------------~~-------~~~-~--------------------------------------- 241 (501)
T PRK11288 236 ---------------------------AM-------VGR-E--------------------------------------- 241 (501)
T ss_pred ---------------------------Hh-------cCC-C---------------------------------------
Confidence 00 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhH
Q 047171 789 TLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGP 868 (1224)
Q Consensus 789 ~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 868 (1224)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 869 KKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRT 948 (1224)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 948 (1224)
..
T Consensus 242 -----------------------------------------~~------------------------------------- 243 (501)
T PRK11288 242 -----------------------------------------IG------------------------------------- 243 (501)
T ss_pred -----------------------------------------cc-------------------------------------
Confidence 00
Q ss_pred HHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 949 IFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 949 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
.. ... .+.. +.+..++++|+++. .+++|+||+|++||++||+||||||||||+++|+|
T Consensus 244 --~~--~~~--~~~~---------~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 244 --DI--YGY--RPRP---------LGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred --cc--ccc--cccC---------CCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 00 000 0000 01125899999742 38999999999999999999999999999999999
Q ss_pred ccCCCCceEEECCccCCCCCH-HHHhcceEEEecCCC---CC-cccHHHHHccCCCCC--------CHHHHHHHHHHHhH
Q 047171 1029 FYDPQSGSVMVDERNIKSYNL-RKLRSCIALVSQEPT---LF-AGTIRQNIVYGKEVA--------TEAEIRKAAVLANA 1095 (1224)
Q Consensus 1029 l~~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp~---LF-~gTIreNl~~~~~~~--------~deei~~al~~a~l 1095 (1224)
+++|++|+|.+||.++...+. +.+|++++|+||+|. +| ..|+.||+.++.... ...+-. ..+
T Consensus 302 ~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 376 (501)
T PRK11288 302 ATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENA 376 (501)
T ss_pred CCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHH
Confidence 999999999999998865443 456789999999973 55 479999998652110 111111 112
Q ss_pred HHHHHhcccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcc
Q 047171 1096 HEFISSTEDGYD-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAH 1173 (1224)
Q Consensus 1096 ~~~I~~lp~gld-t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaH 1173 (1224)
.+++..+ |++ ........+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|+|||
T Consensus 377 ~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH 454 (501)
T PRK11288 377 DRFIRSL--NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454 (501)
T ss_pred HHHHHhc--CcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3334333 332 22344556899999999999999999999999999999999999999999998875 4789999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1174 RLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1174 rl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+++.+.. ||++++|++|++++.|+++|..
T Consensus 455 d~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 455 DLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999866 9999999999999999988764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-66 Score=677.75 Aligned_cols=216 Identities=19% Similarity=0.304 Sum_probs=184.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++|++++|+++ +.++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.+..|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 469999999999632 3569999999999999999999999999999999999999999999999999865 46678899
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
|||+||++.++. .|++|||.+... ..+.++ +.+.++..++.+ ........||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-----------~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-----------YADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHH
Confidence 999999998886 699999976321 122333 233344444433 33344567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+.+|+||||||||++||+.+.+.+++.|++.. +|+|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999999864 58999999999999976 999999999999999999999765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=653.24 Aligned_cols=455 Identities=21% Similarity=0.378 Sum_probs=346.3
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh-cccEE
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR-SQMGL 395 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~i~~ 395 (1224)
-|+++|++++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++...+....+ ..+||
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 37788888888643 35679999999999999999999999999999999999999877765554 57999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 396 VNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|+|++.++.. |++||+.++.... .+.. ..+.+.++.+ |++........+||||||||++|||||+.+|++
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999988875 9999999875321 1111 1233455555 555556777889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~ 552 (1224)
|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++... .....+
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~~~~~~ 236 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-----DIIQAI 236 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH-----HHHHHH
Confidence 99999999999999999999998764 58999999999999876 999999999999998887775432 000000
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCC
Q 047171 553 VQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDN 632 (1224)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1224)
.. . . .. . . . .
T Consensus 237 --------~~-~-----~------------~~----------~--~-------------~--------------~----- 246 (510)
T PRK15439 237 --------TP-A-----A------------RE----------K--S-------------L--------------S----- 246 (510)
T ss_pred --------hC-c-----c------------cc----------c--c-------------c--------------c-----
Confidence 00 0 0 00 0 0 0 0
Q ss_pred CCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047171 633 SHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANL 712 (1224)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 712 (1224)
..
T Consensus 247 -----------------------------------------------------~~------------------------- 248 (510)
T PRK15439 247 -----------------------------------------------------AS------------------------- 248 (510)
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 713 IQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSL 792 (1224)
Q Consensus 713 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1224)
+ .
T Consensus 249 ---------------------------------~--~------------------------------------------- 250 (510)
T PRK15439 249 ---------------------------------Q--K------------------------------------------- 250 (510)
T ss_pred ---------------------------------c--c-------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHH
Q 047171 793 LVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872 (1224)
Q Consensus 793 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 872 (1224)
T Consensus 251 -------------------------------------------------------------------------------- 250 (510)
T PRK15439 251 -------------------------------------------------------------------------------- 250 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTI 952 (1224)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 952 (1224)
. .
T Consensus 251 ----------------------------------------------------------------------------~-~- 252 (510)
T PRK15439 251 ----------------------------------------------------------------------------L-W- 252 (510)
T ss_pred ----------------------------------------------------------------------------c-c-
Confidence 0 0
Q ss_pred HccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 953 LDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
...+.. .. .. ++.+..|+++|++. .+|+|+||+|++||++||+||||||||||+++|.|+.+|
T Consensus 253 ~~~~~~-~~-~~-------~~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 253 LELPGN-RR-QQ-------AAGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred cccccc-cc-cc-------CCCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 000000 00 00 00112489999983 159999999999999999999999999999999999999
Q ss_pred CCceEEECCccCCCCCHHH-HhcceEEEecCC---CCCc-ccHHHHHccCC----CC-CCHHHHHHHHHHHhHHHHHHhc
Q 047171 1033 QSGSVMVDERNIKSYNLRK-LRSCIALVSQEP---TLFA-GTIRQNIVYGK----EV-ATEAEIRKAAVLANAHEFISST 1102 (1224)
Q Consensus 1033 ~~G~I~idG~di~~~~~~~-lR~~i~~V~Qdp---~LF~-gTIreNl~~~~----~~-~~deei~~al~~a~l~~~I~~l 1102 (1224)
++|+|.++|.++...+... +|++++||||++ .+|. .|+.+|+.... +. ....+.+ ..+.+++..+
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 390 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL 390 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc
Confidence 9999999999998776654 467899999996 3665 59999985320 10 0111111 1223444443
Q ss_pred ccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh
Q 047171 1103 EDGYD-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK 1180 (1224)
Q Consensus 1103 p~gld-t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~ 1180 (1224)
|++ .........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..
T Consensus 391 --~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~ 468 (510)
T PRK15439 391 --NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQ 468 (510)
T ss_pred --CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 343 23455567899999999999999999999999999999999999999999998875 47899999999999976
Q ss_pred -cCEEEEEeCCEEEEecChhHHhh
Q 047171 1181 -ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1181 -aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
||+|++|++|+++..|+++++..
T Consensus 469 ~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 469 MADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred hCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999988754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=697.46 Aligned_cols=481 Identities=20% Similarity=0.239 Sum_probs=399.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 63 PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL 142 (1224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (1224)
+++.+++.+.+.+...++|.++++++++.|+.||++ . ++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 943 ~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~---~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271 943 FFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT---M-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC---C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778889999999999999999999999998 4 999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNM 222 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~ 222 (1224)
++++++|.+++++++++++++++..++.+..+...+......+.+.+.+.|.++|+.+||+|++++.+.++|.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999998776555554455555556666667777777788889999999999999999999999999999999888655
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 223 ELGIKQGLTKGLLLGSM-GMTYGA--WAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAAT 299 (1224)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 299 (1224)
+..........+..... .+..+. .+++++++.. ..+.|.+..++.|+.....++..+...+..+..+..|.+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333332222 111111 1112222222 234455555556666667778888888889999999999
Q ss_pred HHHHHhccCCCCCCCcccc--------------ccc--ccccccEEEEeEEEECCCC------------CCCCEEEEEcC
Q 047171 300 RIFEMIDRVPVINSEDEIG--------------KTL--AYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGS 351 (1224)
Q Consensus 300 ri~~~l~~~~~~~~~~~~~--------------~~~--~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~ 351 (1224)
|+.++++.+++.....+.. ..+ .+..|.|+|+||+|+|++. ++|+++||||+
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGr 1253 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGR 1253 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECC
Confidence 9999998765532111000 000 1235789999999999742 25679999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhc
Q 047171 352 SGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAAN 431 (1224)
Q Consensus 352 sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~ 431 (1224)
||||||||+++|+|+|+ ++|+|++||+|+++++.+.+|++|+||||||+||+|||||||.... ..++++++++++.++
T Consensus 1254 SGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~ 1331 (1490)
T TIGR01271 1254 TGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVG 1331 (1490)
T ss_pred CCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCC
Confidence 99999999999999997 7999999999999999999999999999999999999999997653 478999999999999
Q ss_pred HHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Q 047171 432 VHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHR 511 (1224)
Q Consensus 432 ~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~ 511 (1224)
+++++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||
T Consensus 1332 L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHR 1411 (1490)
T TIGR01271 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411 (1490)
T ss_pred CHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 512 LSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 512 l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
++++.+||+|+||++|+|+|.|+|++|++. ++.|+++++.+..
T Consensus 1412 l~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~----~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNE----TSLFKQAMSAADR 1454 (1490)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHHcC----CcHHHHHHHHhCh
Confidence 999999999999999999999999999975 7899999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=649.10 Aligned_cols=442 Identities=21% Similarity=0.338 Sum_probs=339.4
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEecCCCCCCc-c
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFS-T 405 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~-~ 405 (1224)
.-++||+|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+++.++||+|++.++. .
T Consensus 12 ~il~~vs~~i~---~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 12 KALDNVNLKVR---PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EeeeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 46889999874 567999999999999999999999999999999999999876654 445778999999998775 4
Q ss_pred cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 047171 406 SIKENILIGKPG-----ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480 (1224)
Q Consensus 406 ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ 480 (1224)
|++||+.++... .+.++.. ..+++.++.+ |++........+||||||||++|||||+.+|++||||||
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred CHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999986421 1112111 2234556666 666666778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 481 TSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
|++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++... +..+
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~---------~~~~---- 228 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD---------KIIA---- 228 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH---------HHHH----
Confidence 99999999999999998864 58999999999999875 999999999999987754432100 0000
Q ss_pred hhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCCCCCchH
Q 047171 559 AMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSPSS 638 (1224)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1224)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNF 718 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 718 (1224)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 719 AIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRV 798 (1224)
Q Consensus 719 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 798 (1224)
.+ +.. .
T Consensus 229 -----------------~~-------~~~-~------------------------------------------------- 234 (491)
T PRK10982 229 -----------------MM-------VGR-S------------------------------------------------- 234 (491)
T ss_pred -----------------HH-------hCC-C-------------------------------------------------
Confidence 00 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHH
Q 047171 799 AIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWF 878 (1224)
Q Consensus 799 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1224)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 047171 879 SGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSE 958 (1224)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 958 (1224)
. . . ..++.
T Consensus 235 -------------------------------~------------------------------------~---~--~~~~~ 242 (491)
T PRK10982 235 -------------------------------L------------------------------------T---Q--RFPDK 242 (491)
T ss_pred -------------------------------c------------------------------------c---c--ccccc
Confidence 0 0 0 00000
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEE
Q 047171 959 IDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038 (1224)
Q Consensus 959 ~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1038 (1224)
. .+ +.+..|+++|++++| .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.
T Consensus 243 --~-~~--------~~~~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 306 (491)
T PRK10982 243 --E-NK--------PGEVILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT 306 (491)
T ss_pred --c-CC--------CCCcEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence 0 00 011258999999875 2489999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHH-HHhcceEEEecCCC---CCc-ccHHHH-----HccCCCC---CCHHHHHHHHHHHhHHHHHHhcccc
Q 047171 1039 VDERNIKSYNLR-KLRSCIALVSQEPT---LFA-GTIRQN-----IVYGKEV---ATEAEIRKAAVLANAHEFISSTEDG 1105 (1224)
Q Consensus 1039 idG~di~~~~~~-~lR~~i~~V~Qdp~---LF~-gTIreN-----l~~~~~~---~~deei~~al~~a~l~~~I~~lp~g 1105 (1224)
+||.++...+.. .+|+.++|+||++. +|. .|+.+| +.+.... .+..+.. ..+.+++..+ |
T Consensus 307 ~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~ 379 (491)
T PRK10982 307 LHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--R 379 (491)
T ss_pred ECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--C
Confidence 999999876654 45788999999963 555 577766 3321111 1111211 1223344443 2
Q ss_pred cc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cC
Q 047171 1106 YD-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-AD 1182 (1224)
Q Consensus 1106 ld-t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD 1182 (1224)
+. -.......+||||||||++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||
T Consensus 380 l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d 459 (491)
T PRK10982 380 VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITD 459 (491)
T ss_pred ccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCC
Confidence 31 12345566899999999999999999999999999999999999999999998865 58999999999999866 99
Q ss_pred EEEEEeCCEEEEecChhHH
Q 047171 1183 NIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1183 ~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++++|++|+++..++.+++
T Consensus 460 ~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 460 RILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred EEEEEECCEEEEEEccccC
Confidence 9999999999988876543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=635.12 Aligned_cols=524 Identities=19% Similarity=0.231 Sum_probs=400.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 647 AIEWKRTLLGCLGSAGSGAIYPSY-AYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHL 725 (1224)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 725 (1224)
++.++.++++++++++..++.... +++...+++.... . .. ....++++.++..++.++..+.....+.++
T Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~----~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (547)
T PRK10522 9 RQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT----S---LL--VLPEFLGLLLLLMAVTLGSQLALTTLGHHF 79 (547)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----c---ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443 4444555543211 0 00 111122233334556778888899999999
Q ss_pred HHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 726 VQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAV 805 (1224)
Q Consensus 726 ~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~ 805 (1224)
..++|.+++++++++|++||+ ++++|++++|+++|++.+...+. .+..++..++.+++.++++++++|.+++++++.
T Consensus 80 ~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 80 VYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999 67899999999999999998765 467778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccH---HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 047171 806 QPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQ---DRILDLFRETMKGPKKESIKQSWFSGIG 882 (1224)
Q Consensus 806 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1224)
+|+.+++.+...+..++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..+...+...+........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 99888777777777777777778888899999999999999995 4443 4667888888877776666655554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 047171 883 LFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPE 962 (1224)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 962 (1224)
..+...+..+..++.++++... ..+ +.+.+..+..+......|+..+...+.++..+..+.+|+.++.+.+++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 236 VNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3333333333333333333322 112 2333333333333455789999999999999999999999987544321111
Q ss_pred CCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc
Q 047171 963 DPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER 1042 (1224)
Q Consensus 963 ~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1042 (1224)
++ .+.+..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+
T Consensus 313 ~~-----~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 313 RP-----QAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred cc-----cccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 10 11112357999999999974 346999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1043 NIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1043 di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
|+++++.+++|++++||||||++|++|+++| + +..++++++++++.+++.+++. .|+|. .+|.+||||||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKGQK 455 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHHHH
Confidence 9999999999999999999999999999999 3 4567888888887777666553 23332 14789999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEe-cChh
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ-GTQS 1199 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~-Gt~~ 1199 (1224)
||++||||++++|+|||||||||+||+++++.+.+.+.+.. .++|+|+||||+++++.||+|++|++|+++|. |++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCch
Confidence 99999999999999999999999999999999999997654 48999999999999999999999999999987 5665
Q ss_pred HHhh
Q 047171 1200 SLLS 1203 (1224)
Q Consensus 1200 eLl~ 1203 (1224)
+-..
T Consensus 536 ~~~~ 539 (547)
T PRK10522 536 DAAS 539 (547)
T ss_pred hhhh
Confidence 5443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=639.85 Aligned_cols=441 Identities=21% Similarity=0.301 Sum_probs=330.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++|++++|++. .++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 5667777777532 256799999999999999999999999999999999998887777667777899999
Q ss_pred CCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 398 QEPIL--F-------STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 398 Q~~~l--f-------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
|++.+ + ..|++||+.++.. ..++ +++.++.+ |++........+||||||||++|||||
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVK--DPAR---------CEQLAQQF--GITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccchh--HHHH---------HHHHHHHc--CCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 98743 2 3588888765310 1112 23344444 555556777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCC
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEG 546 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~ 546 (1224)
+.+|++|||||||++||+++.+.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~---- 226 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA---- 226 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch----
Confidence 99999999999999999999999999998864 47899999999999876 9999999999999988777654310
Q ss_pred chHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccC
Q 047171 547 GAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQND 626 (1224)
Q Consensus 547 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1224)
...++... . .
T Consensus 227 -~~~~~~~~----------------------------~-------------~---------------------------- 236 (490)
T PRK10938 227 -LVAQLAHS----------------------------E-------------Q---------------------------- 236 (490)
T ss_pred -hhhhhhhh----------------------------h-------------c----------------------------
Confidence 00000000 0 0
Q ss_pred ccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHH
Q 047171 627 KNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFL 706 (1224)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 706 (1224)
T Consensus 237 -------------------------------------------------------------------------------- 236 (490)
T PRK10938 237 -------------------------------------------------------------------------------- 236 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 707 TLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASL 786 (1224)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~ 786 (1224)
+ ... ..
T Consensus 237 -----------------------------------~--~~~-~~------------------------------------ 242 (490)
T PRK10938 237 -----------------------------------L--EGV-QL------------------------------------ 242 (490)
T ss_pred -----------------------------------c--Ccc-cc------------------------------------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhh
Q 047171 787 AYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMK 866 (1224)
Q Consensus 787 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 866 (1224)
T Consensus 243 -------------------------------------------------------------------------------- 242 (490)
T PRK10938 243 -------------------------------------------------------------------------------- 242 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 867 GPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAI 946 (1224)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 946 (1224)
T Consensus 243 -------------------------------------------------------------------------------- 242 (490)
T PRK10938 243 -------------------------------------------------------------------------------- 242 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHH
Q 047171 947 RTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI 1026 (1224)
Q Consensus 947 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL 1026 (1224)
....+...... . ......|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|
T Consensus 243 -------~~~~~~~~~~~-----~-~~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l 306 (490)
T PRK10938 243 -------PEPDEPSARHA-----L-PANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306 (490)
T ss_pred -------Ccccccccccc-----c-CCCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 00000000000 0 001125999999999963 3589999999999999999999999999999999
Q ss_pred hcccCC-CCceEEECCccCCC-CCHHHHhcceEEEecCCCCCc---ccHHHHHccCCC-------CCCH---HHHHHHHH
Q 047171 1027 ERFYDP-QSGSVMVDERNIKS-YNLRKLRSCIALVSQEPTLFA---GTIRQNIVYGKE-------VATE---AEIRKAAV 1091 (1224)
Q Consensus 1027 ~rl~~p-~~G~I~idG~di~~-~~~~~lR~~i~~V~Qdp~LF~---gTIreNl~~~~~-------~~~d---eei~~al~ 1091 (1224)
+|+.+| ++|+|.++|.++.. .+...+|++++|+||++.++. .|+++++.++.. .... +++.++++
T Consensus 307 ~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 386 (490)
T PRK10938 307 TGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLD 386 (490)
T ss_pred cCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHH
Confidence 998875 69999999987632 233457889999999987642 467777653210 0111 22333333
Q ss_pred HHhHHHHHHhccccccc-ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeE
Q 047171 1092 LANAHEFISSTEDGYDT-YCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-G-RTC 1168 (1224)
Q Consensus 1092 ~a~l~~~I~~lp~gldt-~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~Tv 1168 (1224)
.. |++. .......+||||||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ + .|+
T Consensus 387 ~~-----------~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tv 455 (490)
T PRK10938 387 IL-----------GIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQL 455 (490)
T ss_pred Hc-----------CCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 33 3332 33445567999999999999999999999999999999999999999999998753 4 469
Q ss_pred EEEccCchhhhh--cCEEEEEeCCEEEEec
Q 047171 1169 VVVAHRLSTIQK--ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1169 I~IaHrl~ti~~--aD~I~vl~~G~Ive~G 1196 (1224)
|+|||+++.+.. ||++++|++|+|++.-
T Consensus 456 iivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 456 LFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred EEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999964 8999999999998754
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=648.10 Aligned_cols=483 Identities=23% Similarity=0.332 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 63 PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL 142 (1224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (1224)
+++.+.+...+.+...++...+++++++-|++|||. +++|+|+||+++|++.+++.+...+..++..++.+++.++
T Consensus 876 ~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt----TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 876 LLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT----TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC----CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 556777888899999999999999999999999998 4999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNM 222 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~ 222 (1224)
++.+..|++.++++.+..++..+..++.+-.+...+-.....+-..+++.|+++|+-|||+|+.|+.+.+++.+..+.+.
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999999888888888888888888888888888888888899999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 223 ELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRI 301 (1224)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 301 (1224)
+...-..-...++.--. .+..+.+..+..+. .+...+..++|.+-..+.|.+.....+..+......+.....|.|||
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv 1110 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERV 1110 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 66544332222222222 22222211111111 11122226678877778899988888888888899999999999999
Q ss_pred HHHhccCCCCCCCccc--ccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 302 FEMIDRVPVINSEDEI--GKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 302 ~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.|+.+.+++.+...+. +++.-+.+|+|+|+|++.+|.+. +++++|||||++|||||||+++|.|+.
T Consensus 1111 ~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~ 1190 (1381)
T KOG0054|consen 1111 LEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV 1190 (1381)
T ss_pred HHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc
Confidence 9999876651111111 12223457999999999999643 256799999999999999999999999
Q ss_pred CCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccc
Q 047171 368 DPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV 447 (1224)
Q Consensus 368 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 447 (1224)
+|.+|+|.|||.||.++.+++||++++++||||.||+||+|.|+-=- .+.+|+++|+|++.|++.++++++|.|+|+.|
T Consensus 1191 e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1191 EPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV 1269 (1381)
T ss_pred CccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCcee
Confidence 99999999999999999999999999999999999999999998421 25789999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCc
Q 047171 448 GQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527 (1224)
Q Consensus 448 ~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G 527 (1224)
.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++.-+++|||.||||++|+.++|||+|||+|
T Consensus 1270 ~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1270 SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAG 1349 (1381)
T ss_pred cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecChHHHHhhccCCCchHHHHHH
Q 047171 528 RVIESGSHDVLMQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 528 ~i~~~g~~~~l~~~~~~~~~~y~~~~~ 554 (1224)
+|+|.|++++|++++ ++.|+++..
T Consensus 1350 ~v~EfdsP~~Ll~~~---~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1350 RVVEFDSPAELLSDK---DSLFSSLLK 1373 (1381)
T ss_pred eEeecCChHHHHhCC---cchHHHHHH
Confidence 999999999999874 566664443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=686.68 Aligned_cols=212 Identities=23% Similarity=0.411 Sum_probs=180.3
Q ss_pred cEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC---CCCceEEECCccCCCCCHHHH
Q 047171 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD---PQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~~~~l 1052 (1224)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|+|..+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 3569999999999999999999999999999999999997 68899999999884 257
Q ss_pred hcceEEEecCCC-CCcccHHHHHccCC----C-CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1053 RSCIALVSQEPT-LFAGTIRQNIVYGK----E-VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1053 R~~i~~V~Qdp~-LF~gTIreNl~~~~----~-~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
|++++||||++. ++..||||||.++. + ..++++ +.++++..++ .+..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 899999999875 55689999998742 1 223333 3344444433 34578999998889999999
Q ss_pred HHHHHHHHHccCCC-EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh--hhcCEEEEEeCC-EEEEecC
Q 047171 1123 QRIALARAVLKNPM-ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTI--QKADNIVVIKNG-KVVEQGT 1197 (1224)
Q Consensus 1123 QRlaLARAll~~p~-ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti--~~aD~I~vl~~G-~Ive~Gt 1197 (1224)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++. +|+|+|+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 689999999999973 569999999997 9999998
Q ss_pred hh
Q 047171 1198 QS 1199 (1224)
Q Consensus 1198 ~~ 1199 (1224)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=571.62 Aligned_cols=509 Identities=23% Similarity=0.297 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHH-H---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 20 LFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEA-V---DKV-------PEKGMCWTRTAERQASRIRMEYLKS 87 (1224)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~-~---~~~-------~~~~~~~~~~~~~~~~~lR~~~~~~ 87 (1224)
+...+++.+..++....|+++=++-|.+.+. +...+... + ..+ +++.....+.+.++...+...+|..
T Consensus 26 ~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a 105 (580)
T COG4618 26 IGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAA 105 (580)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344555555666777778888888987643 22222211 1 111 5667777889999999999999999
Q ss_pred HHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047171 88 VLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAE-KIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPG 166 (1224)
Q Consensus 88 l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 166 (1224)
..+.+..-- ..|+=. ..-+|.++++.|++. ....++...++.+ .+.++|.+++++.++.++...+++.+.
T Consensus 106 ~~~~~l~~~-------~~g~~~-Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~la 176 (580)
T COG4618 106 SFSAPLLRR-------GSGDGL-QPLRDLDQVRQFLTGTGLTAFFDAPWMPL-YLAVIFLFHPWLGLIALAGAIILVVLA 176 (580)
T ss_pred HHhhHHhhc-------CCCccc-cchhhHHHHHHHHcCCCcchhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876665422 222222 234699999999987 4455555556555 566788899999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 047171 167 IVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGA 245 (1224)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 245 (1224)
++-.+..++-.++..+...+.+..++-...|..+|++.|..+...++|.+.+.++.....+.+-..+.+.... .+=...
T Consensus 177 ~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~l 256 (580)
T COG4618 177 LLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMAL 256 (580)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999999999999999999999999999999888888877777777 666677
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccc
Q 047171 246 WAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLR 325 (1224)
Q Consensus 246 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 325 (1224)
...++..|+|++++|++|+|.+++....+.....|+-.....+..+..++.|.+|+.++|...|...+ .-+.+..+
T Consensus 257 Qs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~ 332 (580)
T COG4618 257 QSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQ 332 (580)
T ss_pred HHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCC
Confidence 77889999999999999999999988888888899999999999999999999999999987665322 13345556
Q ss_pred ccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
|.+.++++++.=|+. ++|+.+|||||||||||||.++|.|.++|++|.|++||-|++.++.+.+-++|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 778888888765533 24568999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
||.|||..||+|||+|||+=-.++++.+.+.+|++.+++||.|.++|+||||.+|+.|..|||||||||+||||||.||.
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 99999999999999999985556788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+++||||-|+||.+.|..+.++|...+ +|.|+|+||||.+.+..+|+|+||++|++...|+.+|.+++
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999998865 68999999999999999999999999999999999999876
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-66 Score=632.99 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=171.5
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------AN 383 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eE
Confidence 36999999999963 35999999999999999999999999999999999999999999999983 57
Q ss_pred eEEEecCCC--CC-cccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEPT--LF-AGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp~--LF-~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++|+||++. ++ ..|+++|+.+.. ....++++.+.++..++. .........+||||||||++||||+
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHH
Confidence 999999984 44 369999997532 222344555555554431 1122345567999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV-EQGTQSSLLSM 1204 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv-e~Gt~~eLl~~ 1204 (1224)
+++|+||||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999886 4699999999999876 9999999999998 88999998864
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=619.88 Aligned_cols=503 Identities=19% Similarity=0.189 Sum_probs=386.4
Q ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhhhcCCChHHHHH----HHH---HHHHHHHHHHHHHHHHHHH
Q 047171 8 FRYADGKDKLLLLFGTVGSIGDGMMTPL-TMYILSMVINELGTSDISISIE----AVD---KVPEKGMCWTRTAERQASR 79 (1224)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~ 79 (1224)
++|.+++++ .++++++++++.+++... .|++.+.++|.... +...+.. .+. ..++..++..+.+.++..+
T Consensus 5 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (547)
T PRK10522 5 RLVWRQYRW-PFISVMALSLASAALGIGLIAFINQRLIETADT-SLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYR 82 (547)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555544 345555666666655554 35677888886532 1111110 011 1156777788899999999
Q ss_pred HHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047171 80 IRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFS 159 (1224)
Q Consensus 80 lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 159 (1224)
+|.++|+|++++|+++|++ . ++|++++|+++|++.++.++. .++.++.+++.++++++++++++|.+++++++++
T Consensus 83 lR~~l~~~ll~~~~~~~~~---~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 83 LRSEFIKRILDTHVERIEQ---L-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHhCCHHHHhc---c-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999998 5 999999999999999998776 4778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 160 LLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGE---HQTLKRFSLALRKNMELGIKQGLTKGLLL 236 (1224)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1224)
|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 9998888899999999999999999999999999999999996 4443 45678888888877776666555444333
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 047171 237 GSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSED 315 (1224)
Q Consensus 237 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 315 (1224)
... .+..+...+.+++++... .+ +.+.+..+.++......|+..+...+..++++..+.+|+.++++.+++.+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~ 313 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSLG-WA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPR 313 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 322 222222222333333221 12 33333334444444567999999999999999999999999986543211111
Q ss_pred ccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC
Q 047171 316 EIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL 384 (1224)
Q Consensus 316 ~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~ 384 (1224)
....+ ..+.|+++||+|+|++. ++|+++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 314 --~~~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 390 (547)
T PRK10522 314 --PQAFP-DWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE 390 (547)
T ss_pred --ccccC-cCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC
Confidence 11111 13579999999999753 35779999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccC---CCCCCChHHHHH
Q 047171 385 QLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ---FGVQLSGGQKQR 461 (1224)
Q Consensus 385 ~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~---~g~~LSgGq~qr 461 (1224)
+.+++|++|+||+|||++|++|++|| + ++.+++++.++++..++.+ ++..++ +|.+||||||||
T Consensus 391 ~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~G~~LSgGq~qR 457 (547)
T PRK10522 391 QPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAH---------KLELEDGRISNLKLSKGQKKR 457 (547)
T ss_pred CHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCch---------hhhccccCCCCCCCCHHHHHH
Confidence 99999999999999999999999999 3 3455555555555444433 333333 388999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEee-cChHH
Q 047171 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIES-GSHDV 537 (1224)
Q Consensus 462 iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~-g~~~~ 537 (1224)
++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++.+
T Consensus 458 l~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 458 LALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 999999999999999999999999999999999987543 48999999999999999999999999999986 44443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=620.87 Aligned_cols=202 Identities=26% Similarity=0.384 Sum_probs=165.3
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++ ++ +
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 35999999999963 3599999999999999999999999999999999999999999999954 21 5
Q ss_pred eEEEecCC-CCCc-ccHHHHHccCCCCC----CHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEP-TLFA-GTIRQNIVYGKEVA----TEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp-~LF~-gTIreNl~~~~~~~----~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGGQrQRlaLA 1128 (1224)
++|+||++ .++. .|++||+.++.... .+.+..++++.. |+.. ........||||||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF-----------NFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhC-----------CCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999997 5554 59999998753211 122222222222 2321 12344567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-CEEE-EecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKN-GKVV-EQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~-G~Iv-e~Gt~~eLl~~ 1204 (1224)
||++.+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999999886 3 499999999999876 999999986 8887 47888888764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-64 Score=617.98 Aligned_cols=200 Identities=27% Similarity=0.431 Sum_probs=163.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+++ ++ +|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999963 3599999999999999999999999999999999999999999999954 21 59
Q ss_pred EEEecCCC-CCc-ccHHHHHccCCCC--CC--HHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPT-LFA-GTIRQNIVYGKEV--AT--EAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~-LF~-gTIreNl~~~~~~--~~--deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+|+||++. ++. .|++||+.++... .. +.+..+ .+..+ |++. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA---------YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999973 554 6999999876321 11 112222 22222 3322 234455679999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-CEEE-EecChhHHhh
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKN-GKVV-EQGTQSSLLS 1203 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~-G~Iv-e~Gt~~eLl~ 1203 (1224)
|++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|++++..+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999999873 499999999999876 999999997 6876 4588877654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-62 Score=606.44 Aligned_cols=531 Identities=16% Similarity=0.154 Sum_probs=438.9
Q ss_pred HHHHHHHhhHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWK-----RTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLI 713 (1224)
Q Consensus 639 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 713 (1224)
+++++++..+.|+ .+++.+++.++...+....|++.+.+++.....+..........++++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455665555544 56677777777788888899999999987764332222222334555566667777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 714 QHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLL 793 (1224)
Q Consensus 714 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1224)
..++......++..++|++.+++....++.+||. .+|++.+|+++|++.+.+.+...+..++..++.+++.++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999988999999983 5799999999999999999999999999999998888877775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHH
Q 047171 794 -VTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872 (1224)
Q Consensus 794 -~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 872 (1224)
.+|.+++++++.+|+..++.....+...+...+.++..+.......|.++|+++|++|+.|+.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCcCHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHH
Q 047171 873 IKQSWFSGIGLFSSQFLTTA--SITLTFWYAGRIMN-Q----GLVSPKQLFQAFF-L---LMSTGKNIADAGSMTSDIAK 941 (1224)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-~----g~~t~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 941 (1224)
.+...+......+..++... ..++.++.|...+. . |.+|.+.+++.+. + +.....|+..+.....++.+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888777643 23333333343332 2 6788888766333 2 34557788999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCC------CCCC-CC-------------CCCCCCCcccEEEEEEEEECCCCCCccceeceeE
Q 047171 942 GSSAIRTIFTILDRKSEIDP------EDPK-AS-------------EDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTL 1001 (1224)
Q Consensus 942 ~~~a~~ri~~~~~~~~~~~~------~~~~-~~-------------~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl 1001 (1224)
+..+.+|+.++++.+++... ..+. .. ........+.|+++||+|+|++ +.++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 99999999999976443210 0000 00 0000112356999999999973 3469999999
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC---
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK--- 1078 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~--- 1078 (1224)
+|++||++||+||||||||||+++|+|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 57899999999999999999999864
Q ss_pred ----CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHH
Q 047171 1079 ----EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154 (1224)
Q Consensus 1079 ----~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~ 1154 (1224)
+..++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34578899999999999999987 999999986 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 047171 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKN 1189 (1224)
Q Consensus 1155 I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~ 1189 (1224)
+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=607.94 Aligned_cols=504 Identities=14% Similarity=0.093 Sum_probs=415.4
Q ss_pred chHHHHhhccchhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChHHHHH----HHHH-----H------H
Q 047171 3 TKGGLFRYADGKDK----LLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIE----AVDK-----V------P 63 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~----~~~~-----~------~ 63 (1224)
.++++++|++|+++ ..+++.+++.++.+++....|++.+.++|.+...+...+.. .+.. + |
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888887754 24566777777788888889999999999876543322211 0000 0 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047171 64 EKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILV 143 (1224)
Q Consensus 64 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (1224)
+..++......++..++|.+++++....+..+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.+++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-----~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~ 232 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-----RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFK 232 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-----CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777888888888888888888888884 6799999999999999999999999999999999988887
Q ss_pred HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHH
Q 047171 144 AFL-LSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNM 222 (1224)
Q Consensus 144 ~~~-~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~ 222 (1224)
++. ++|.+++++++.+|+.+++..++.+++.+..++.++..++.++...|.++|+++||+|+.|+.+.++|++..++..
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 876 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHH-h----cCccHHHHHH-HHHH---HHHHHHHHHHHHHHHHH
Q 047171 223 ELGIKQGLTKGLLLGSM-GMTYG--AWAFQSWVGSVLVT-E----RGEKGGLVFV-AGIC---TILGGVGIMSALPNLSF 290 (1224)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~g~~~~~-~----~~~~~g~~~~-~~~~---~~~~~~~~~~~~~~~~~ 290 (1224)
+...+..+..+...++. ++... ..++.++.|...+. . |.+|.|.+++ |+.+ +.....|+..+...+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~ 392 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRD 392 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877776 44332 22333334443332 2 6789888776 4444 44557899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCC--------c-ccc-------------cccccccccEEEEeEEEECCCC--------
Q 047171 291 ISQATTAATRIFEMIDRVPVINSE--------D-EIG-------------KTLAYLRGEIEFKDVDFSYPTR-------- 340 (1224)
Q Consensus 291 ~~~~~~s~~ri~~~l~~~~~~~~~--------~-~~~-------------~~~~~~~~~i~~~~v~f~y~~~-------- 340 (1224)
++++.++.+|++++++.+++.+.. . ..+ .......+.|+++||+|+|++.
T Consensus 393 i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~is 472 (659)
T TIGR00954 393 MTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecce
Confidence 999999999999999764432100 0 000 0011123569999999999632
Q ss_pred ---CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCC--
Q 047171 341 ---PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK-- 415 (1224)
Q Consensus 341 ---~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~-- 415 (1224)
+++++++|+||||||||||+++|+|+++|++|+|.+++ |++++||+|+|++|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 25679999999999999999999999999999999874 56899999999999999999999974
Q ss_pred -----CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 047171 416 -----PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490 (1224)
Q Consensus 416 -----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~ 490 (1224)
++.+++++.++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34567889999999999999888 999999876 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 491 IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 491 ~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
.+.+.+++. |+|+|+||||+++++.||+|++|+.
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999998764 8999999999999999999999973
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=613.44 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=164.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999742 269
Q ss_pred EEEecCC--CCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEP--TLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++ .++. .|+.+++....+...++++.+.++..++.. .........||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 488888742222222334444444433211 12233445799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecChhHHh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV-EQGTQSSLL 1202 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv-e~Gt~~eLl 1202 (1224)
+|++|||||||++||+.+...+.+.|+++ +.|||+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999887 4599999999999976 9999999999997 689998874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=634.69 Aligned_cols=213 Identities=23% Similarity=0.371 Sum_probs=176.4
Q ss_pred cEEEEEEEEECCCC----------CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccC
Q 047171 977 FIELKNVFFSYPSR----------PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNI 1044 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~----------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di 1044 (1224)
.+.|+||++..+.. ....+|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999997532 123699999999999999999999999999999999999763 689999999876
Q ss_pred CCCCHHHHhcceEEEecCCCCCc-ccHHHHHccCC----C-CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCC
Q 047171 1045 KSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGK----E-VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERG 1114 (1224)
Q Consensus 1045 ~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~----~-~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G 1114 (1224)
+ ...+|+.+|||+|++.++. .|++|||.++. + ..++++ +.+.++..++.+ -.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence 4 3457788999999987775 69999998742 1 223332 344555544433 3477787554
Q ss_pred -CCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh-h-hhcCEEEEEeC-
Q 047171 1115 -VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLST-I-QKADNIVVIKN- 1189 (1224)
Q Consensus 1115 -~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t-i-~~aD~I~vl~~- 1189 (1224)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 57999999999984 4 56999999996
Q ss_pred CEEEEecChh
Q 047171 1190 GKVVEQGTQS 1199 (1224)
Q Consensus 1190 G~Ive~Gt~~ 1199 (1224)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999863
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=596.34 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=163.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5999999999963 45999999999999999999999999999999999999999999999 5432 59
Q ss_pred EEEecCC-CCCc-ccHHHHHccCCCCC--C--HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1057 ALVSQEP-TLFA-GTIRQNIVYGKEVA--T--EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1057 ~~V~Qdp-~LF~-gTIreNl~~~~~~~--~--deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
+|++|++ .++. .|+.||+.++.+.. + +.++.+.++..++. ++..+ .....||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~----~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAM----TPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHh----ChhhhCCHHHHHHHHHHHH
Confidence 9999986 3554 59999998753221 1 22222222222210 11123 3445799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-CCEEEE-ecChhHHhh
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK-NGKVVE-QGTQSSLLS 1203 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~-~G~Ive-~Gt~~eLl~ 1203 (1224)
++.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|+ +|++.+ .|+|++-+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999876 5699999999999876 99999998 899987 577777643
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=597.49 Aligned_cols=200 Identities=30% Similarity=0.406 Sum_probs=164.0
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++||+++|++ ..++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 36999999999963 23589999999999999999999999999999999999999999999976 246
Q ss_pred eEEEecCCCCCcccHHHHHcc--C--CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEPTLFAGTIRQNIVY--G--KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~--~--~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
|+|+||++. ...++.+|... . .+..+++++.++++..++.+. ........||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHH
Confidence 999999973 23345555321 1 123456666666666555321 12234568999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecChhHH
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV-EQGTQSSL 1201 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv-e~Gt~~eL 1201 (1224)
+.+|++|||||||++||+.+...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999775 3599999999999976 9999999999998 67887765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=588.90 Aligned_cols=192 Identities=22% Similarity=0.311 Sum_probs=161.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|.|+.+|++|+|.++ + ++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 5899999999953 25999999999999999999999999999999999999999999986 1 59
Q ss_pred EEEecCCCC-CcccHHHHHccCCCCCC-HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYGKEVAT-EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~~~~~~-deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+|+||++.+ ++.|++||+.++..... +..+.++++..++.+ .......+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~-----------~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER-----------LLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH-----------HHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999875 46799999987532222 223344444444432 23344567999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|+ |++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999998753 7899999999999876 99999996 48877776
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=547.08 Aligned_cols=446 Identities=24% Similarity=0.406 Sum_probs=341.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 396 (1224)
++++|++++|++. .++++.||+|+||||||||+|.|+|.|+|++|+|.+||++..-.++ +.....|+.|
T Consensus 9 l~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 7788888888753 2577999999999999999999999999999999999999986665 5567789999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 397 NQEPILFST-SIKENILIGKPGAS-METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
+||..|++. ||.|||.+|+.... .--+.+..-...+.+.+.++ |.+........+||+||||.|+||||+..+++|
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl 166 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL--GLDIDPDTLVGDLSIAQRQMVEIARALSFDARV 166 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc--CCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999976 99999999975322 11111222222233456655 332225666678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecCh-HHHHhhccCCCchHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSH-DVLMQMNNGEGGAYSK 551 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~-~~l~~~~~~~~~~y~~ 551 (1224)
+|||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||+||+.+..++. .++-.
T Consensus 167 lIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~----------- 235 (500)
T COG1129 167 LILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE----------- 235 (500)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-----------
Confidence 99999999999988778888888765 79999999999999977 999999999999874321 00000
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCC
Q 047171 552 MVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHD 631 (1224)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1224)
+ +
T Consensus 236 ----------------------------------------------------------------------~----~---- 237 (500)
T COG1129 236 ----------------------------------------------------------------------D----E---- 237 (500)
T ss_pred ----------------------------------------------------------------------H----H----
Confidence 0 0
Q ss_pred CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 047171 632 NSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIAN 711 (1224)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 711 (1224)
++...
T Consensus 238 ---------------------------------------------lv~~M------------------------------ 242 (500)
T COG1129 238 ---------------------------------------------LVRLM------------------------------ 242 (500)
T ss_pred ---------------------------------------------HHHHh------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 712 LIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLS 791 (1224)
Q Consensus 712 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1224)
+|+
T Consensus 243 ----------------------------------------vGr------------------------------------- 245 (500)
T COG1129 243 ----------------------------------------VGR------------------------------------- 245 (500)
T ss_pred ----------------------------------------hCc-------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHH
Q 047171 792 LLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKE 871 (1224)
Q Consensus 792 ~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~ 871 (1224)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 872 SIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFT 951 (1224)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 951 (1224)
+
T Consensus 246 -------------------------------------------------------------------------------~ 246 (500)
T COG1129 246 -------------------------------------------------------------------------------E 246 (500)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 952 ILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+-+..+. .. .. .+....++++|++.. ..++|+||++++||.+||.|--|||+|-++++|+|..+
T Consensus 247 ~~~~~~~-~~--~~------~~~~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~ 310 (500)
T COG1129 247 LEDLFPE-PP--EE------GIGEPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310 (500)
T ss_pred hhhhccc-cc--cc------CCCCcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc
Confidence 0000000 00 00 001124778887642 15799999999999999999999999999999999988
Q ss_pred CCCceEEECCccCCCCCHH-HHhcceEEEecCCC----CCcccHHHHHccCC-CCCCHH-HHHHHHHHHhHHHHHHhccc
Q 047171 1032 PQSGSVMVDERNIKSYNLR-KLRSCIALVSQEPT----LFAGTIRQNIVYGK-EVATEA-EIRKAAVLANAHEFISSTED 1104 (1224)
Q Consensus 1032 p~~G~I~idG~di~~~~~~-~lR~~i~~V~Qdp~----LF~gTIreNl~~~~-~~~~de-ei~~al~~a~l~~~I~~lp~ 1104 (1224)
+.+|+|.+||.++.--++. ..+..|+|||-|-. +...+|++|+.+.. ...... -+....+.....+++.+|.-
T Consensus 311 ~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I 390 (500)
T COG1129 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI 390 (500)
T ss_pred CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc
Confidence 9999999999988777755 58899999999874 44679999998762 111100 23444455556677776532
Q ss_pred ---ccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-
Q 047171 1105 ---GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ- 1179 (1224)
Q Consensus 1105 ---gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~- 1179 (1224)
+.+.+ ..+||||++|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|+++|+||..+.++.
T Consensus 391 k~~s~~~~----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~ 466 (500)
T COG1129 391 KTPSPEQP----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLG 466 (500)
T ss_pred ccCCccch----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHh
Confidence 23333 35799999999999999999999999999999999999999999999876 6899999999999986
Q ss_pred hcCEEEEEeCCEEEEe
Q 047171 1180 KADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1180 ~aD~I~vl~~G~Ive~ 1195 (1224)
.||||+||.+|+|+..
T Consensus 467 ~~DRIlVm~~Gri~~e 482 (500)
T COG1129 467 LSDRILVMREGRIVGE 482 (500)
T ss_pred hCCEEEEEECCEEEEE
Confidence 5999999999999864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=555.63 Aligned_cols=204 Identities=31% Similarity=0.428 Sum_probs=172.8
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
+..++++|+++.|++. +++++++||.|++|++||||||||+|||||+++|.|...|.+|+|.+.-. +
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 3469999999999643 57999999999999999999999999999999999999999999998543 3
Q ss_pred ceEEEecCC-CCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1055 CIALVSQEP-TLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1055 ~i~~V~Qdp-~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++||.+|+. .++ +.|+-|++.-..+...+.+++..|...++..- -..++| ..||||||-|+.||+.++
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v----~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPV----GVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCch----hhcCHhHHHHHHHHHHhc
Confidence 499999998 444 35899999876655556777777665544221 123344 469999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe-cChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ-GTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~-Gt~~eLl~~ 1204 (1224)
.+|.+|||||||.+||.+|...+.++|.+. ..|||+|||+.+.+.. |++|+++++ ++.++ |+|++-++.
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999999876 5699999999999988 999999998 88777 888887654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-58 Score=514.71 Aligned_cols=451 Identities=25% Similarity=0.452 Sum_probs=345.6
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC-CHHHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL-QLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v 396 (1224)
++++++++.||+. .++++-||.|+||+|||||++.|.|+|+|++|+|++||++++-- +.+.+|..||+|
T Consensus 5 l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMV 84 (501)
T COG3845 5 LEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMV 84 (501)
T ss_pred EEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEE
Confidence 5666666666531 35779999999999999999999999999999999999999855 457788999999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 397 NQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
.|++.|++. ||.|||.+|.+......+........+.+..+++ |++-...++...||-||||||.|-+|||++|++|
T Consensus 85 hQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iL 162 (501)
T COG3845 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRGARLL 162 (501)
T ss_pred eeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcCCCEE
Confidence 999999977 9999999998642111111222223344555555 6666777888899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 476 LLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
|||||||-|-|...+.+.+.++.+. .|+|+|+|||++.++.. |||+-||++|+++..-++ .
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~--------------- 225 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V--------------- 225 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C---------------
Confidence 9999999999988888888888764 69999999999999987 999999999998652110 0
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccccccCccCCCCC
Q 047171 554 QLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNS 633 (1224)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1224)
. + .+ .+
T Consensus 226 ----------------~-------------~---------~t------------------------------~~------ 231 (501)
T COG3845 226 ----------------A-------------E---------TT------------------------------EE------ 231 (501)
T ss_pred ----------------C-------------C---------CC------------------------------HH------
Confidence 0 0 00 00
Q ss_pred CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047171 634 HSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLI 713 (1224)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 713 (1224)
. ++.++
T Consensus 232 -------e--------------------------------la~lM----------------------------------- 237 (501)
T COG3845 232 -------E--------------------------------LAELM----------------------------------- 237 (501)
T ss_pred -------H--------------------------------HHHHh-----------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 714 QHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLL 793 (1224)
Q Consensus 714 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1224)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHH
Q 047171 794 VTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESI 873 (1224)
Q Consensus 794 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 873 (1224)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 874 KQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTIL 953 (1224)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~ 953 (1224)
....+.
T Consensus 238 --------------------------------vG~~v~------------------------------------------ 243 (501)
T COG3845 238 --------------------------------VGREVV------------------------------------------ 243 (501)
T ss_pred --------------------------------cCCccc------------------------------------------
Confidence 000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC
Q 047171 954 DRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033 (1224)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1033 (1224)
.+. + .. +..|....++++|++..=+ + +.+.+++|||+|++||.+||.|-.|-|-+.|+.+|.|+.+|.
T Consensus 244 -~~~---~-~~-----~~~pg~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~ 311 (501)
T COG3845 244 -LRV---V-KP-----PSTPGEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA 311 (501)
T ss_pred -ccc---c-cC-----CCCCCCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC
Confidence 000 0 00 1112233689999998532 2 345799999999999999999999999999999999999999
Q ss_pred CceEEECCccC-CCCCHHHHh-cceEEEecCCC----CCcccHHHHHccCCCC---------CCHHHHHHHHHHHhHHHH
Q 047171 1034 SGSVMVDERNI-KSYNLRKLR-SCIALVSQEPT----LFAGTIRQNIVYGKEV---------ATEAEIRKAAVLANAHEF 1098 (1224)
Q Consensus 1034 ~G~I~idG~di-~~~~~~~lR-~~i~~V~Qdp~----LF~gTIreNl~~~~~~---------~~deei~~al~~a~l~~~ 1098 (1224)
+|+|.++|.|+ ...++..+| ..++|||.|.+ ..+.|+.||+.++... .+..++.+.+ .+.
T Consensus 312 ~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~l 386 (501)
T COG3845 312 SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----REL 386 (501)
T ss_pred CceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHH
Confidence 99999999997 666777764 56999999985 6678999999876422 1223343322 233
Q ss_pred HHhc---ccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccC
Q 047171 1099 ISST---EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHR 1174 (1224)
Q Consensus 1099 I~~l---p~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHr 1174 (1224)
++.+ +.+.+++ ..+||||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-+
T Consensus 387 i~~fdVr~~~~~~~----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d 462 (501)
T COG3845 387 IEEFDVRAPSPDAP----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462 (501)
T ss_pred HHHcCccCCCCCcc----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh
Confidence 3322 2233333 35799999999999999999999999999999999999999999998776 68999999999
Q ss_pred chhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1175 LSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1175 l~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|+.+.. ||||.||.+|+|+....+++
T Consensus 463 LDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 463 LDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHhhheeeeeeCCceeccccccc
Confidence 999866 99999999999998776665
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-53 Score=469.42 Aligned_cols=237 Identities=27% Similarity=0.428 Sum_probs=223.5
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|.|+|+|++++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++||||+|.+|++|+++|+++.. ..++++++++++.+++.+++..+|++|++.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998653 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
+||||||||++||+.+++.+++.|++...++|+|+||||++++..||||++|++|++++.|+|++|++. ++.|++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~ 235 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE--KSHFKQAIS 235 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC--cHHHHHHHh
Confidence 999999999999999999999999988889999999999999999999999999999999999999986 688999986
Q ss_pred Hh
Q 047171 1216 MQ 1217 (1224)
Q Consensus 1216 ~q 1217 (1224)
..
T Consensus 236 ~~ 237 (275)
T cd03289 236 PS 237 (275)
T ss_pred hc
Confidence 54
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=405.86 Aligned_cols=223 Identities=31% Similarity=0.519 Sum_probs=190.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC-CCCCHHHHhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI-KSYNLRKLRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di-~~~~~~~lR~~ 1055 (1224)
-|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.++.+|++|+|.+||.++ ...+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 44699999999999999999999999999999999999999999999999766 33378899999
Q ss_pred eEEEecCCCCCc-ccHHHHHccCC---CCCCHHHH----HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGK---EVATEAEI----RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~---~~~~deei----~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+|+|+|...||. .|+.||+.++- ...+.+|- .+.++++++.|-... .+.+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHH
Confidence 999999999996 79999999862 12233322 334455555554444 446799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMG 1205 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~ 1205 (1224)
||||.-+|+++|+|||||||||+.-..+.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|+|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999887 57899999999999988 9999999999999999999999874
Q ss_pred CCchhHHH
Q 047171 1206 NGGAYYSL 1213 (1224)
Q Consensus 1206 ~~g~y~~l 1213 (1224)
.+..-+++
T Consensus 228 ~~~R~~~F 235 (240)
T COG1126 228 KSERTRQF 235 (240)
T ss_pred CCHHHHHH
Confidence 33333333
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=450.83 Aligned_cols=225 Identities=29% Similarity=0.448 Sum_probs=199.5
Q ss_pred CCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCC-
Q 047171 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIK- 1045 (1224)
Q Consensus 972 ~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~- 1045 (1224)
|+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 5566789999999999642 3569999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhcceEEEecCCCCCcccHHHHHccCCC--CCCHHHHHH-----HHHHHhHHHHHHhcccccccccCCCCCCC
Q 047171 1046 -SYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VATEAEIRK-----AAVLANAHEFISSTEDGYDTYCGERGVQL 1117 (1224)
Q Consensus 1046 -~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~~deei~~-----al~~a~l~~~I~~lp~gldt~vge~G~~L 1117 (1224)
..++..+|++++||||+|++|++|++|||+++.. ..++++.++ +++.++ ++.++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 4566789999999999999999999999997632 234454433 334433 3456678899999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999999889999999999999988 9999999999999999
Q ss_pred ChhHHhhc
Q 047171 1197 TQSSLLSM 1204 (1224)
Q Consensus 1197 t~~eLl~~ 1204 (1224)
+++++...
T Consensus 307 ~~~~l~~~ 314 (329)
T PRK14257 307 ETKTIFIH 314 (329)
T ss_pred CHHHHhcC
Confidence 99999876
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=420.20 Aligned_cols=228 Identities=35% Similarity=0.534 Sum_probs=193.5
Q ss_pred EEEEEEEEECCCC--CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---HHHH
Q 047171 978 IELKNVFFSYPSR--PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKL 1052 (1224)
Q Consensus 978 I~~~~vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~l 1052 (1224)
|+++||++.|+.. +...+|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999852 1246899999999999999999999999999999999999999999999998887776 5557
Q ss_pred hcceEEEecCCCCCc-ccHHHHHccCCC--CCCHHHHH----HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1053 RSCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIR----KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~----~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
|++||+|+|++.|++ .|+.+|+.|... ..+.+++. +.++.+++ ...-+..+.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL-----------~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGL-----------SDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCC-----------hhhhccCchhcCcchhhHH
Confidence 899999999999997 899999998743 23444443 33444444 3344455678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||..+|+|||.|||||||||+|.+.|.+.|++.- -|-|+++|||.++.+++ |||+.||++|+|+|+|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998754 37899999999999988 9999999999999999999999
Q ss_pred hcCCCchhHHHHHH
Q 047171 1203 SMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1203 ~~~~~g~y~~l~~~ 1216 (1224)
.+++...=.+++..
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 87434444455443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=390.86 Aligned_cols=218 Identities=30% Similarity=0.480 Sum_probs=199.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC-----ceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS-----GSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--~~~ 1049 (1224)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||++++|.|+.+... |+|.+||.||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 4569999999999999999999999999999999999999875 999999999966 579
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC------CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE------VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~------~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
-.+|+++|+|+|.|.-|..||.||+.||-. ..-||-++++++.|.+||-+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 999999999999999999999999999832 1124568899999999998753 344678889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
||||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.+.-..+ +|+...+..|+++|.|..+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999988999999999998765 9999999999999999999998
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 76
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-48 Score=389.16 Aligned_cols=207 Identities=35% Similarity=0.554 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC-CCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK-KLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~i~~v 396 (1224)
|+++||+++|++. .++++++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|+++|+|
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCee
Confidence 7888999998743 357799999999999999999999999999999999998874 33788899999999
Q ss_pred cCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 397 NQEPILFST-SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
+|+..||+. |+.||+.++.- ..+.++..+. +.+.++++ |+.......+.+|||||||||||||||..+|
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 999999976 99999998742 2233333222 23566666 7777788899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+++++|||||||||+....+.+.+.++ ..|.|.|+|||.+.+++. ||||+.||+|+|+++|+++++..+
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999886 468999999999999988 999999999999999999999876
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=423.05 Aligned_cols=194 Identities=30% Similarity=0.395 Sum_probs=161.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|.++||+|.|++.+ .+++++||-|.++++||+|||||+|||||++++.|...|+.|.|.-.-. -++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 699999999997543 6899999999999999999999999999999999999999999865432 224
Q ss_pred EEEecCC---CCCcccHHHHHccCCCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 ALVSQEP---TLFAGTIRQNIVYGKEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~~V~Qdp---~LF~gTIreNl~~~~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++..|.- .-++.|.-|++..--++ -..+++...+...|+...... .++ .+||+|||.||++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~------~p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQV------VPM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccc------cch----hhcccccchhHHHHHHHh
Confidence 4444543 35677888888754443 456778888888877644332 233 479999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~ 1195 (1224)
++|.||||||||++||.++-..+.++|.++ ..+||+|||+...|.+ +++|.+.+||.+...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 999999999999999999999999999987 5699999999999988 999999999988653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=414.46 Aligned_cols=235 Identities=44% Similarity=0.730 Sum_probs=217.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|+||++.+|+.|++|||.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987554456677778888889999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++++. .+.|..++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc--cChHHHHHh
Confidence 9999999999999999999999998778999999999999988999999999999999999999886 678887764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=391.46 Aligned_cols=223 Identities=32% Similarity=0.481 Sum_probs=191.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.++++++..+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHHccCC--CCCCHHHH----HHHHHHHhHH--HHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGK--EVATEAEI----RKAAVLANAH--EFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~--~~~~deei----~~al~~a~l~--~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
||-|..-||. .||.|||.+-- ...+.+++ .+.++++++. +|. ..-+..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~-----------~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA-----------DRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh-----------hcCchhcCcchhhHHHHH
Confidence 9999999996 79999998641 13344444 3444444442 233 344568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLSMG 1205 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl~~~ 1205 (1224)
|||..+|+|||+|||.+|||+-++..+|+-+.+.-+ ++|+|+|||++++.- -+|||+||++|+|+.+|+|+++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999877643 899999999999865 59999999999999999999999984
Q ss_pred CCchhHHHH
Q 047171 1206 NGGAYYSLI 1214 (1224)
Q Consensus 1206 ~~g~y~~l~ 1214 (1224)
.+.+-.+++
T Consensus 228 an~FV~~f~ 236 (309)
T COG1125 228 ANDFVEDFF 236 (309)
T ss_pred cHHHHHHHh
Confidence 443333443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=414.56 Aligned_cols=241 Identities=32% Similarity=0.513 Sum_probs=222.4
Q ss_pred CcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHh
Q 047171 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 974 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1053 (1224)
..|.|+++|++++|+.. +.++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999642 24699999999999999999999999999999999999999999999999999998888999
Q ss_pred cceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++++|++|+|.+|++|++||+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653 234667888888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
+|++|||||||++||+++++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++++. .++.|+.+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 252 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ-EDGVFASL 252 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cchHHHHH
Confidence 99999999999999999999999999987778999999999999988999999999999999999999876 46788888
Q ss_pred HHHh
Q 047171 1214 IKMQ 1217 (1224)
Q Consensus 1214 ~~~q 1217 (1224)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=401.92 Aligned_cols=235 Identities=52% Similarity=0.803 Sum_probs=217.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 245899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|+||++.+|++|++||+.++....+++++..+++.+++.+.+..+|.|+++.+...+.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655567778888888899999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
|||||||++||+++.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|..++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~--~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc--ccHHHHHHhc
Confidence 9999999999999999999999988778899999999999988999999999999999999999875 6777776653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=406.50 Aligned_cols=225 Identities=26% Similarity=0.422 Sum_probs=205.8
Q ss_pred ccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
|.|+++||+|+|++ . +++++++|+|+||||||||+++|+|+++ ++|+|++||.++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 45888888888852 1 2567999999999999999999999998 799999999999999999999999
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+||||+|.+|++|+++|+....+ .++++++++++.+++++++.++|.|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999964322 46788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
||||||||++||+++.+.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|++++|++. .+.|++++
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~----~~~~~~~~ 234 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE----KSHFKQAI 234 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC----cHHHHHHH
Confidence 99999999999999999999999987778999999999999989999999999999999999999986 66777776
Q ss_pred HHH
Q 047171 554 QLQ 556 (1224)
Q Consensus 554 ~~~ 556 (1224)
...
T Consensus 235 ~~~ 237 (275)
T cd03289 235 SPS 237 (275)
T ss_pred hhc
Confidence 544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=401.06 Aligned_cols=232 Identities=56% Similarity=0.882 Sum_probs=213.3
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+++ +.++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|+||++.+|+.|++||+.++....+.+++.+.++..++.+++..+|.|+++..+..+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566677777888889999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHH
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+.|+.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~ 232 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAK 232 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc--Ccchhh
Confidence 9999999999999999999999998888999999999999988999999999999999999999875 455544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=401.48 Aligned_cols=235 Identities=64% Similarity=0.954 Sum_probs=214.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++..+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533356999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|+||++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987555556677777788889999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHH
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++... .+.+++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ--KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc--ChhHHHHh
Confidence 9999999999999999999999987778999999999999988999999999999999999999864 55555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=379.57 Aligned_cols=208 Identities=33% Similarity=0.581 Sum_probs=179.2
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+|+|||+.|.+. ++++.++++|||||||||++|+|.|+++|++|+|++||+++++++...||++||||-
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 5777777777643 356799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc--ccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 398 QEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE--TKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|..-||+. ||.|||++-.. ..+.+++.+ .+++.+..+ |++ ....+.+++|||||+|||.+||||+.+|
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999976 99999987422 234444332 234455544 454 2467788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
+|+++|||++||||.+...+|+.+.++.+ ++|+|+|||++++.-+ ||||.+|++|+|+..++++++++++
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999987643 8999999999998755 9999999999999999999999874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=398.36 Aligned_cols=227 Identities=49% Similarity=0.807 Sum_probs=211.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++|++++|++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 36899999999963 2359999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++|+||++.+|++|++||+.++.+...++++.++++..++.+++..+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555667788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+.++++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999988764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=396.27 Aligned_cols=220 Identities=38% Similarity=0.596 Sum_probs=206.6
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999742 3469999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++|+||+|.+|++|++|||.+... .+.+++.++++..++.+++..+|.|+++..++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987643 4677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999999886
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=389.91 Aligned_cols=203 Identities=34% Similarity=0.587 Sum_probs=172.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---HhcccEEecCCCCCCc-
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQMGLVNQEPILFS- 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r~~i~~v~Q~~~lf~- 404 (1224)
-++|||+.- ++|++.||||+||+|||||++++.++-.|++|+|.+||+|+..++... +|++||+++|++.|++
T Consensus 21 al~~vsL~I---~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 21 ALDDVSLEI---PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeccceEEE---cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence 445555544 356799999999999999999999999999999999999998887544 5789999999999997
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 405 TSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 405 ~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
.||++||+|...- .+.+++. ....+.++-+ |+....+..+.+|||||||||+|||||+.+|+||+.|||||
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~-----~RV~elLelV--gL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIK-----QRVAELLELV--GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHH-----HHHHHHHHHc--CChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence 6999999997542 2233322 2223344444 67777888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 483 ALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||+|.+.|.+.|++.. -|-|+++|||.++.++. |||+.||++|+++|+|+-.++..+
T Consensus 171 ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred cCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 999999999999998753 48999999999999998 999999999999999999999876
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=390.46 Aligned_cols=214 Identities=34% Similarity=0.534 Sum_probs=192.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++|+|+ ++++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999996 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC-CCCcccHHHHHccCCCC----------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEP-TLFAGTIRQNIVYGKEV----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp-~LF~gTIreNl~~~~~~----------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
|||||++ .-|.-||+|=+.+|+.. .+++.+.+|++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 46678999999988521 123357888999988887543 2346999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
.|||||.++|+||+||||||+||....-.+++.++++. +|+|+|+|.|++... +.||++++|++|+++.+|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999886 379999999999875 569999999999999999999988
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=367.48 Aligned_cols=208 Identities=33% Similarity=0.544 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----cEEEECCEecCC--CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVK-----GNILLDGHKIKK--LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~~~~--~~~~~~ 389 (1224)
.++++|+++.|++. ++..++|++|||||||||+++.+.|..+..+ |+|.++|+||.+ ++...+
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 58899999999753 3445899999999999999999999999865 999999999975 579999
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCC-----C-CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKP-----G-ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~-----~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qria 463 (1224)
|++||+|+|.|.-|+.||+||++||.. + .-++.++++++.+.+++-+.. .+.+.+..|||||+||+|
T Consensus 87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQRLC 159 (253)
T ss_pred HHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHHHH
Confidence 999999999999999999999999943 1 113457788888888876542 356788899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||.-+|+|||||||||||||.+...|.+.+.+++++-|+|+|||.+....+ +|+..++-+|+++|.|+.+++..+
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 999999999999999999999999999999999999999999999999999866 999999999999999999998875
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=415.02 Aligned_cols=227 Identities=31% Similarity=0.477 Sum_probs=191.5
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++|+||||++.+|. .|++||+.++.. ..+. +++.++++.+++.++. ...+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 89999999999995 799999987532 2233 2344555555554433 3445689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999966 99999999999999999999987
Q ss_pred cCCCchhHHHHH
Q 047171 1204 MGNGGAYYSLIK 1215 (1224)
Q Consensus 1204 ~~~~g~y~~l~~ 1215 (1224)
.+....+..+..
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 532334444443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=374.18 Aligned_cols=227 Identities=30% Similarity=0.461 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC-HHHHhc
Q 047171 977 FIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN-LRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-~~~lR~ 1054 (1224)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4899999999974321 24999999999999999999999999999999999999999999999997765433 346788
Q ss_pred ceEEEecCCC--CC-cccHHHHHccCC----CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPT--LF-AGTIRQNIVYGK----EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~--LF-~gTIreNl~~~~----~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
.+.+|+|||. |= .-||++-|.=+. -.....+++++++.+++.+-. ....+..||||||||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHHH
Confidence 9999999996 22 247776664221 112345678888888775432 224556799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC--eEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR--TCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~--TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||.-+|++||||||||+||....+.|++.+.++.+++ |.|+|||+++.+.+ ||||+||++|+++|.++-.++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999999887654 99999999999988 999999999999999999999876
Q ss_pred CCCchhHHHH
Q 047171 1205 GNGGAYYSLI 1214 (1224)
Q Consensus 1205 ~~~g~y~~l~ 1214 (1224)
+...|.+..
T Consensus 233 -~~h~ytr~L 241 (252)
T COG1124 233 -PSHPYTREL 241 (252)
T ss_pred -CccHHHHHH
Confidence 455665443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=368.76 Aligned_cols=224 Identities=32% Similarity=0.538 Sum_probs=192.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
.|++++|+++|. ++.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.++|.|+.+++.++ +|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 699999999996 456999999999999999999999999999999999999999999999999999998654 69
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC---CCCHHHHHHH----HHHHhHHHHHHhcccccccc-cCCCCCCCChHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE---VATEAEIRKA----AVLANAHEFISSTEDGYDTY-CGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~---~~~deei~~a----l~~a~l~~~I~~lp~gldt~-vge~G~~LSGGQrQR 1124 (1224)
+++|+++|+..||+ -||+||+.|... ..+++++++. ++.+ ||... ....++.||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V-----------GL~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV-----------GLRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc-----------CCChhhhhhCchhhcchHHHH
Confidence 99999999999997 599999998643 3345555442 2333 33333 223456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
+|||||+.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+..||++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999887753 7899999999999977 899999999999999999999
Q ss_pred hhcCCCchhHHHHH
Q 047171 1202 LSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1202 l~~~~~g~y~~l~~ 1215 (1224)
.+. .+-+.+++++
T Consensus 234 ~~s-d~P~v~qf~~ 246 (263)
T COG1127 234 LAS-DDPWVRQFFN 246 (263)
T ss_pred HhC-CCHHHHHHhc
Confidence 986 3555555554
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=407.78 Aligned_cols=221 Identities=28% Similarity=0.510 Sum_probs=188.0
Q ss_pred ccEEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC------
Q 047171 976 GFIELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY------ 1047 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~------ 1047 (1224)
..|+++|++|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3699999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCC
Q 047171 1048 ----------NLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGE 1112 (1224)
Q Consensus 1048 ----------~~~~lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gld-t~vge 1112 (1224)
+...+|++++||+|+| .+|+.|++|||.++.. ..+.++..+ .+.+++..+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3567899999999998 6999999999988631 233433322 123444444 554 45677
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCC
Q 047171 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ-KADNIVVIKNG 1190 (1224)
Q Consensus 1113 ~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~aD~I~vl~~G 1190 (1224)
.+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998764 5889999999999875 59999999999
Q ss_pred EEEEecChhHHhh
Q 047171 1191 KVVEQGTQSSLLS 1203 (1224)
Q Consensus 1191 ~Ive~Gt~~eLl~ 1203 (1224)
++++.|+|+++..
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999998754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=400.53 Aligned_cols=213 Identities=35% Similarity=0.564 Sum_probs=191.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++. .+|+|+||+|+.||.++|+|||||||||++++|+|+.+|++|+|.|||.+++++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2899999999999999999999999999999999999999999999999999999886 899
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCCC------CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEVA------TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~~------~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
++|+|+..||. .||+|||.|+.... .++++.++++..++.+.+.+.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999997 69999999985421 2456778888877777766554 579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMG 1205 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~ 1205 (1224)
||+++|+++|||||.|+||+.....+..-|+++.+ +.|+|.|||+...+.. +|||+||++|+|.+.|+|.|+..++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999988887543 6899999999988766 9999999999999999999999873
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=388.56 Aligned_cols=220 Identities=43% Similarity=0.725 Sum_probs=202.6
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|.|+++|++++|+.+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++|+||++.+|..|++||+.++....+++++.+.++..++.+.+...|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998865444566788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999887668999999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=391.07 Aligned_cols=475 Identities=16% Similarity=0.161 Sum_probs=363.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCC---CCHHHHHHHHHhhHHHHHHHHHH
Q 047171 696 YCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDE---NTSAAICARLANEAHLVRSFIAD 772 (1224)
Q Consensus 696 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~---~~~g~l~~rls~d~~~i~~~~~~ 772 (1224)
.+.+|.+++.+..+....+.|+......++-.-+-+.+.++-+...-.|+.... +.+-..-.|+..|+..+-+...+
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 355677777778888888888888888888888888888888877644433211 11123457899999888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047171 773 RMSLLIQVFFSASLAYTLSL---------------LVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQL 837 (1224)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1224)
....++.++.+++...++.. -+.-.+.+++++.+++...+.+..++...+.+-+..+..+.....
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 66666666655544443333 122233344455555555555666777777777777777888888
Q ss_pred HHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Q 047171 838 ASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQ 917 (1224)
Q Consensus 838 ~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~ 917 (1224)
+.-.-++...|-.|+-|+...++.++..........+..........+......++.++-+..++-....|.++.|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 88888899999999999888777776666655554444444444455555555555555556666778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CCCCCCCCCCC-CCC--CCCcccEEEEEEEEECCCCCC
Q 047171 918 AFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS--EIDPEDPKASE-DIE--EPTKGFIELKNVFFSYPSRPD 992 (1224)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~--~~~~~~~~~~~-~~~--~~~~g~I~~~~vsf~Y~~~~~ 992 (1224)
+-..+..+...++.+...++.+..-.+...|+.++.+.-. +.+++.+.... ... ...+..|+|+|++..-|+.
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 9999999999999999999999999999999998874322 11111111100 000 0014679999999998753
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
.+.++++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|..-.. ..+-|+||.|++-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHH
Confidence 46899999999999999999999999999999999999999999876521 3489999999999999999
Q ss_pred HHccCCCC--CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHH
Q 047171 1073 NIVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150 (1224)
Q Consensus 1073 Nl~~~~~~--~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~ 1150 (1224)
-|+|.+.. .+|+++.+++.+|++.+++.++.+- ..-..-||+||||||++||.++++|++++|||||||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998653 8999999999999999999987532 2245679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 047171 1151 SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIK 1188 (1224)
Q Consensus 1151 te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~ 1188 (1224)
+|..+.+.+++.+.+.|+|.|+||.......++.+-+.
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999998888877766654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=395.78 Aligned_cols=211 Identities=27% Similarity=0.327 Sum_probs=169.3
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..+++.+|+|.|+..+ .+.+.+++++++.-.++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 3699999999997442 2789999999999999999999999999999999999999999998877 478
Q ss_pred eEEEecCCCC-CcccHHH--HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCC-CCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEPTL-FAGTIRQ--NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG-VQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp~L-F~gTIre--Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G-~~LSGGQrQRlaLARAl 1131 (1224)
|+|-.|..+= ++-.+-. -+.-..|..+++|+++.|...|+.. ++.-.+ ..||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g-----------~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSG-----------ELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCc-----------hhhhccccccCCcchhHHHHHHHh
Confidence 9999998753 2332221 1111124458999999887765544 333333 56999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchh
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAY 1210 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y 1210 (1224)
..+|.+|+|||||.+||.++-..+-++|+.+ +.-||+|||+.+.+.. |+.++|.++|+|.-. +. .-..|
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i-------eg-~~~~y 567 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI-------EG-GIDKY 567 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee-------ec-cHHHH
Confidence 9999999999999999999999999999876 4579999999999988 999999999999752 10 01247
Q ss_pred HHHHHHhhc
Q 047171 1211 YSLIKMQAS 1219 (1224)
Q Consensus 1211 ~~l~~~q~~ 1219 (1224)
.++...+..
T Consensus 568 Kkl~~~e~~ 576 (582)
T KOG0062|consen 568 KKLLGAELR 576 (582)
T ss_pred HHHHHHHHh
Confidence 777666543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=350.12 Aligned_cols=209 Identities=34% Similarity=0.509 Sum_probs=188.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|.+++|.|+|..- + =.++++|++||+|||+||||||||||++++.||..|.+|+|.|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~---~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL---P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc---e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5678999999643 1 368999999999999999999999999999999999999999999999876664 57899
Q ss_pred EEecCCCCCc-ccHHHHHccCCC------CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE------VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~------~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
+++||..||. -||.+|+.+|.. ....+.+..++..+++.+|..++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999997 699999999853 1234678999999999999999884 599999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|+|+.+||+||||.|+||+.-++.+...+..++ ++.|+++|||.++.++. +|+++++++|||.++|.-+++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998876 46799999999999876 999999999999999999999874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=382.98 Aligned_cols=215 Identities=37% Similarity=0.622 Sum_probs=193.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC-CCCHHHHhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK-SYNLRKLRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~~~~~~lR~~ 1055 (1224)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999855 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1056 IALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1056 i~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+|+|+|+| .+|..||.|.+.||.. ..+.++ +.++++.+++.++. .....+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 99999999 7999999999999843 334444 55666677666553 24456899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999987 999999999999999999999875
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=360.09 Aligned_cols=473 Identities=21% Similarity=0.285 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHH
Q 047171 696 YCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMS 775 (1224)
Q Consensus 696 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~ 775 (1224)
+...++++.++..+.+.+.......++++...++|.++.++++..|+..++ +-..++++.++++|+..+. +....++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 444556666667777777888888999999999999999999999999999 5679999999999999998 5566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhcc--
Q 047171 776 LLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSS-- 853 (1224)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~-- 853 (1224)
.+.++....+++.+...+.++.+.+++++.+.+.+...++...+..+..+..++..+++..+.+..++|.+..+...-
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 899999999999999999999998888888887777777777777777778888889999999999999999876643
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 047171 854 QDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAG 933 (1224)
Q Consensus 854 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~ 933 (1224)
+..+.+.|...-+...+...+...+.....-..+.+....+.+.+|....... -+.....+..+.+.+...|+.++.
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHH
Confidence 22223333322222222111111111122233344444555555665543322 222223334445566678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEc
Q 047171 934 SMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVG 1013 (1224)
Q Consensus 934 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG 1013 (1224)
..++.+..+.+|.+++.++-..++..+-..+. +.|.-..|+++||.|+|++. .--+..||++|++||.|=|+|
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~q-----~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG 356 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRPQ-----AFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIG 356 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCCC-----cCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEEC
Confidence 99999999999999999986643322211111 11223469999999999743 235789999999999999999
Q ss_pred CCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHH
Q 047171 1014 QSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLA 1093 (1224)
Q Consensus 1014 ~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a 1093 (1224)
.|||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++- ++..++.+.+..-++.-
T Consensus 357 ~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~LqrL 431 (546)
T COG4615 357 GNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986541 11225666665544433
Q ss_pred hHHHHHHhcccccccccCCC---CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeE
Q 047171 1094 NAHEFISSTEDGYDTYCGER---GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTC 1168 (1224)
Q Consensus 1094 ~l~~~I~~lp~gldt~vge~---G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~Tv 1168 (1224)
.+.. .|.+.++ ...||-|||.|+|+--|++.+.||++|||=-+.-||.=++...+.+--.. .|||+
T Consensus 432 el~~---------ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 432 ELAH---------KTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHhh---------hhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 3322 2233222 24799999999999999999999999999999999999999888775443 59999
Q ss_pred EEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1169 VVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1169 I~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+.|||+-.....|||++.|++|+++|.
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999985
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=423.76 Aligned_cols=197 Identities=24% Similarity=0.412 Sum_probs=165.9
Q ss_pred CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccCCCCCHHHHhcceEEEecCC-CCCcc
Q 047171 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNIKSYNLRKLRSCIALVSQEP-TLFAG 1068 (1224)
Q Consensus 992 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp-~LF~g 1068 (1224)
.+..|+|||=-++||..+|++|+||||||||++.|.|=-.- .+|+|+|||.+..+ +..++.+|||.|++ |+-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 35689999999999999999999999999999999985432 37999999998765 78999999999987 56567
Q ss_pred cHHHHHccCC-----CCCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC-CEE
Q 047171 1069 TIRQNIVYGK-----EVATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP-MIL 1138 (1224)
Q Consensus 1069 TIreNl~~~~-----~~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p-~IL 1138 (1224)
||||-|.|.. ++.+++| ++++.+..++.++ =|..||..|..||..||.||.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998752 2344443 3445555554443 356799999999999999999999999999 899
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEe-CCEEEEecCh
Q 047171 1139 LLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLST--IQKADNIVVIK-NGKVVEQGTQ 1198 (1224)
Q Consensus 1139 lLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t--i~~aD~I~vl~-~G~Ive~Gt~ 1198 (1224)
+||||||+||+++...|.+.++++. .|+|+++.=|.++. .+..|+++.|+ .|+.+-.|+.
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 9999999999999999999999876 69999999999985 46799999996 5889988864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=348.53 Aligned_cols=201 Identities=33% Similarity=0.538 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCC--------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCC
Q 047171 328 IEFKDVDFSYPTR--------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE 399 (1224)
Q Consensus 328 i~~~~v~f~y~~~--------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 399 (1224)
|.+++|.|+|... +.++++||+||||||||||+++|+||..|.+|+|+|+|+|....++.+ +-+++++||
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhhhhc
Confidence 4677888888643 467899999999999999999999999999999999999998776653 569999999
Q ss_pred CCCCcc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 400 PILFST-SIKENILIGKP-G-----ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 400 ~~lf~~-ti~~ni~~g~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
..||.. ||++||.+|.. . ...+.+..++...++.++.+++|. +||||||||+||||+|+++-
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHhccC
Confidence 999976 99999999963 2 224678888899999999888874 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+||||+|+|||.-...+...+.++. ++.|++||||.++.++. +|+++++++|||.++|+.+++...
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999888888887653 57899999999999976 999999999999999999998865
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=375.57 Aligned_cols=210 Identities=30% Similarity=0.517 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++|+|.++ +||+||||+|++|+.+||+||||||||||+++++|+.+|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999632 59999999999999999999999999999999999999999999999998766433 5789
Q ss_pred EEEecCC---CCCcccHHHHHccCCCC----------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1057 ALVSQEP---TLFAGTIRQNIVYGKEV----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1057 ~~V~Qdp---~LF~gTIreNl~~~~~~----------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
|||||.. +=|.-||+|=+.+|+.. .+.+++.+|++.+++.++. |-++|+ |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHH
Confidence 9999965 46788999999887421 1348899999999999875 345554 9999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
|+.|||||+++|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. ||+|+.|. +++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 8999999999999866 99999885 788899999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 863
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=363.59 Aligned_cols=213 Identities=33% Similarity=0.537 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---HHHHh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~lR 1053 (1224)
.|+++||+.+||+ ++.+|+||||+|++||.|||+||||||||||++.|.|+.+|++|+|.++|.++.... ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 467999999999999999999999999999999999999999999999999998887 66789
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC-----------CCCHH---HHHHHHHHHhHHHHHHhcccccccccCCCCCCCC
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE-----------VATEA---EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~-----------~~~de---ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1118 (1224)
++||+|+|.+.|-. .|+-+|+..|+- -.+.+ ...+|++.+++.++.. .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999875 699999987742 12333 3455666666665532 4556899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~ 1195 (1224)
|||+||++|||||.++|+|+|-|||+|+|||.+.+.|++.|++.. .|.|+|+.-|.++..+. ||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998765 57899999999999876 999999999999999
Q ss_pred cChhHHh
Q 047171 1196 GTQSSLL 1202 (1224)
Q Consensus 1196 Gt~~eLl 1202 (1224)
|++.||-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=371.85 Aligned_cols=197 Identities=33% Similarity=0.523 Sum_probs=172.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.+++++|+.+|+. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 5799999999999999999999999999999999999999999999999987543 3569
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCCC------CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEVA------TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~~------~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||+|++.||. -||+||+.++.... ..+.+.+.++.+++.+|-...| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 79999999885421 1345667777777777655544 579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEE
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKV 1192 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~I 1192 (1224)
||+.+|+|||||||.+|||+.|...+|+-+.+.. .++||++|||+.++.-. +|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998765 36899999999998765 999999999 555
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=386.61 Aligned_cols=219 Identities=49% Similarity=0.828 Sum_probs=199.1
Q ss_pred CcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHh
Q 047171 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 974 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1053 (1224)
..+.|+++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753234699999999999999999999999999999999999999999999999999888878888
Q ss_pred cceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++++|+||++.+|++|++||+.++....+.+++++..+...+.+++..+|.|+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654444555666666677889999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
+|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=390.20 Aligned_cols=213 Identities=32% Similarity=0.526 Sum_probs=182.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH---HHHhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL---RKLRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~---~~lR~ 1054 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 469999999999999999999999999999999999999999999999999987764 56889
Q ss_pred ceEEEecCCCCCcc-cHHHHHccCCC---CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1055 CIALVSQEPTLFAG-TIRQNIVYGKE---VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~g-TIreNl~~~~~---~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
+++||||++.+|.. |++||+.++.. ..+.++ +.++++..++ .........+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-----------RGAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHH
Confidence 99999999999985 99999987521 123332 3333333333 33333445679999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999876
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=357.74 Aligned_cols=444 Identities=21% Similarity=0.240 Sum_probs=336.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047171 63 PEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSIL 142 (1224)
Q Consensus 63 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 142 (1224)
.+........++++.+++|.++.++++.-|+.-+++ .+++.++.++++|+..|. +-...++.+.++.+.++++.+
T Consensus 66 ~is~lg~t~~gq~~I~klr~~~~~kil~tplerier----~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~a 140 (546)
T COG4615 66 LISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER----LGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAA 140 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----hcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHH
Confidence 344556678899999999999999999999999998 489999999999999998 555667889999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH--HHHHHHHHHHH
Q 047171 143 VAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQ--TLKRFSLALRK 220 (1224)
Q Consensus 143 ~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~--~~~~~~~~~~~ 220 (1224)
++.++|+++.+++++++.+.++...+...+..+.....++..+++.+..+..++|-+..+......+ ..+.|....++
T Consensus 141 YLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~ 220 (546)
T COG4615 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQE 220 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHH
Confidence 9999999999999999999888888888999999999999999999999999999999887643222 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 221 NMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAAT 299 (1224)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 299 (1224)
+++...+..........+. .+.+..+.+++|...... --+.....++.+.++++..|+.+....++.+.+|.+|++
T Consensus 221 ~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~ 297 (546)
T COG4615 221 YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFN 297 (546)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 3331111111100111111 223333334444432221 112223344555566677899999999999999999999
Q ss_pred HHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 300 RIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 300 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
||.++-..|+. .+.. .+...++. ..|+++||.|+|++. ..|+.|-|+|.|||||||++++|+|+|.
T Consensus 298 kiakle~~~~~-a~~~-~~q~~p~~-~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~ 374 (546)
T COG4615 298 KIAKLELAPYK-ADFP-RPQAFPDW-KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374 (546)
T ss_pred HHHHhhcCCcc-ccCC-CCCcCCcc-cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 99987543332 2111 11222222 369999999999754 2466999999999999999999999999
Q ss_pred CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhccccccccc
Q 047171 369 PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG-ASMETVVKAAQAANVHDFIMKLNDGYETKV 447 (1224)
Q Consensus 369 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 447 (1224)
|++|+|++||.++..-++++.|+-++-|+-|.|||+.++ |.+. ++.+.+..-.+.-.+ .-.|.+
T Consensus 375 PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel---------~~ktsl 439 (546)
T COG4615 375 PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLEL---------AHKTSL 439 (546)
T ss_pred CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHH---------hhhhcc
Confidence 999999999999999999999999999999999998754 3333 555544433322222 222222
Q ss_pred cCC---CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCCcchhhccCEEE
Q 047171 448 GQF---GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAHRLSTIRKADLIG 522 (1224)
Q Consensus 448 ~~~---g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~i~H~l~~~~~ad~i~ 522 (1224)
..+ ...||-|||.|+|+--|++-+.||++|||=-+-=||.=++.+.+.+... .+|||++.|||+-.....|||++
T Consensus 440 ~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 440 NDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred cCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHH
Confidence 221 3579999999999999999999999999999999999998887766543 36999999999999999999999
Q ss_pred EEeCceEEee
Q 047171 523 VLQSGRVIES 532 (1224)
Q Consensus 523 vl~~G~i~~~ 532 (1224)
.|++|+++|.
T Consensus 520 ~~~~G~~~e~ 529 (546)
T COG4615 520 EMRNGQLSEL 529 (546)
T ss_pred HHhcCceeec
Confidence 9999999874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=388.92 Aligned_cols=212 Identities=34% Similarity=0.580 Sum_probs=181.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc-----CCCCceEEECCccCCCCC--HH
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY-----DPQSGSVMVDERNIKSYN--LR 1050 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-----~p~~G~I~idG~di~~~~--~~ 1050 (1224)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 35999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCCC---CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEV---AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
.+|++++|+||++.+|..|++||+.++... .. ++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999875321 11 2334555555554433322110 4689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
|++||||++++|++|||||||++||+++.+.+.+.|++..+.+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988655899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=351.22 Aligned_cols=208 Identities=27% Similarity=0.467 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR~ 1054 (1224)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||++++|++...|++|+|.++|.|+..+.-++ ||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999854 67999999999999999999999999999999999999999999999999998887555 899
Q ss_pred ceEEEecCCCCC-cccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLF-AGTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF-~gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+||+|+||..|. +-|+.||+.+... ... .+++.++++.+++.+-...+|. +|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999876 4699999998642 112 3567788899998888887774 699999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||++.+|++||-||||-+||+++...|++.+++.- .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998864 58999999999999988 567999999999876543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=376.34 Aligned_cols=206 Identities=38% Similarity=0.621 Sum_probs=184.2
Q ss_pred CCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH
Q 047171 973 PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 973 ~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1052 (1224)
|..+.|+++|++++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+
T Consensus 2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 344679999999999642 2469999999999999999999999999999999999999999999999999988888889
Q ss_pred hcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
|++++||||+|.+|++|++||+.+... .+++++.++++ +.+....|||||+||++||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987642 34444444332 24567789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~ 1198 (1224)
++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999988778999999999999988999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=366.87 Aligned_cols=207 Identities=34% Similarity=0.502 Sum_probs=172.4
Q ss_pred EEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---H-
Q 047171 978 IELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---L- 1052 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---l- 1052 (1224)
++++||+..|..... ..+|+++||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 46899999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcceEEEecCCCCCc-ccHHHHHccCC--CCCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1053 RSCIALVSQEPTLFA-GTIRQNIVYGK--EVAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~-gTIreNl~~~~--~~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
|++||||+|+..|++ .|++||+.+.. .... ++...+.++..++.+... ...+.+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 667999999999875 69999998531 1111 223333333334433221 144568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive 1194 (1224)
||||||+.+|+|++.||||.+||.+|.+.|.+.+.+.. .|+|+|+|||+......|||++.|.||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999885 3789999999999999999999999999543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=387.17 Aligned_cols=218 Identities=29% Similarity=0.465 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC---CCCceEEECCccCCCCCHHHHh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD---PQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~~~~lR 1053 (1224)
.|+++|+++.|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cceEEEecCCCCCcccHHHHHccCCC--C------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 SCIALVSQEPTLFAGTIRQNIVYGKE--V------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~gTIreNl~~~~~--~------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++|+||+|.+|..|++||+.++.. . ..++++.++++..++.+++. ....+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHH
Confidence 99999999999999999999987521 0 11223455555555544332 234556778999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998865 999999999999999999999864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=393.71 Aligned_cols=217 Identities=30% Similarity=0.533 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+.....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642224599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEP--TLFAGTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+||+|+| .++..|++|||.++.. ..+. +.+.++++..++.++.. ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 3667899999987632 1232 34555566656554433 34468999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999988999999999999999999998764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=394.82 Aligned_cols=217 Identities=32% Similarity=0.531 Sum_probs=193.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 699999999996 45799999999999999999999999999999999999999999999999999998876 5899
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC---CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE---VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~---~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
++|+|+..||. .||+|||.||.. ...+ +.+.++++.+++.++-.+.| .+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 799999999964 1222 36778888888877655444 57999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGTQSSLLSMG 1205 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~aD~I~vl~~G~Ive~Gt~~eLl~~~ 1205 (1224)
|||..+|++||||||-|+||.+-...++.-+++.. .|.|.|+|||+-++. ..+|||+||++|+|...|||+|+...
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~- 227 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER- 227 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC-
Confidence 99999999999999999999999999999888764 388999999999875 55999999999999999999999987
Q ss_pred CCchh
Q 047171 1206 NGGAY 1210 (1224)
Q Consensus 1206 ~~g~y 1210 (1224)
+...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 44444
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=396.81 Aligned_cols=210 Identities=30% Similarity=0.488 Sum_probs=181.8
Q ss_pred cccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CC
Q 047171 325 RGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQ 385 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 385 (1224)
.+.|+++|++|+|++. ++|+++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4679999999999632 2567999999999999999999999997 579999999999973 45
Q ss_pred HHHHhcccEEecCCCCCCcccHHHHHhcCCC--CCCHHHH-----HHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 386 LKWLRSQMGLVNQEPILFSTSIKENILIGKP--GASMETV-----VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 386 ~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~~~~~~-----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
...+|+.++||||+|++|++|++|||.|+.. ..++++. .++++.++ ++.++++.++++|.+|||||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCHHH
Confidence 5678999999999999999999999998742 1233333 22333332 34456788999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||||+||||++++|+|||||||||+||+++...+++.|+++.+++|+|+|||+++++.. ||+|+||++|+|++.|++++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988888999999999999987 99999999999999999999
Q ss_pred HHhh
Q 047171 538 LMQM 541 (1224)
Q Consensus 538 l~~~ 541 (1224)
+...
T Consensus 311 l~~~ 314 (329)
T PRK14257 311 IFIH 314 (329)
T ss_pred HhcC
Confidence 9865
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=399.79 Aligned_cols=213 Identities=27% Similarity=0.461 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|+. +.++|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.++++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 34699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.++.. ..+. +++.++++..++.++..+ ...+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999996 699999998743 1222 345566666666555443 34579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999988754 7899999999998765 999999999999999999999876
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=392.03 Aligned_cols=217 Identities=32% Similarity=0.567 Sum_probs=184.2
Q ss_pred EEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC--HHHHh
Q 047171 978 IELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN--LRKLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--~~~lR 1053 (1224)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 SCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 ~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++||||+| .+|+.|++|||.++.. ..+.++ +.++++.+++. +.+.......+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5788999999987532 233333 33333333331 01334556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|+++++|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999985 49999999999999999999986
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=398.93 Aligned_cols=212 Identities=30% Similarity=0.510 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.++ .++++
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 458999999999999999999999999999999999999999999999999987665 36889
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++. ......||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999998742 1222 3445555555554433 3445689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||+++|++||||||||+||+.+.+.+++.|+++.+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+++++...
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998764 7899999999999855 999999999999999999999876
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=382.90 Aligned_cols=222 Identities=26% Similarity=0.483 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcce
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~i 1056 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 459999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEecCCCCCcc-cHHHHHccCCCCCCHHHH-------HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEI-------RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~~~~deei-------~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+|+||++.+|.+ |++||+.++........+ ........+.+.+..+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999986 999999875321100000 0000111233444443 565556677788999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998875 68899999999999866 999999999999999999998753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=399.53 Aligned_cols=211 Identities=33% Similarity=0.481 Sum_probs=180.8
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH----hcceEEEecCCCCCc-
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL----RSCIALVSQEPTLFA- 1067 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Qdp~LF~- 1067 (1224)
.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++++||||++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 889999999999997
Q ss_pred ccHHHHHccCCCC--CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 047171 1068 GTIRQNIVYGKEV--AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141 (1224)
Q Consensus 1068 gTIreNl~~~~~~--~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLD 1141 (1224)
.||+|||.++... .+ ++++.++++.+++.++ ....+.+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999876321 12 2344555555555443 44555689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHHHH
Q 047171 1142 EATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1142 EaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+..+.++..++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 9999999999999999998874 37999999999998754 9999999999999999999998763233333443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=399.18 Aligned_cols=231 Identities=35% Similarity=0.527 Sum_probs=188.8
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 356999999999999999999999999999999999999999999999999998877654 57
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
++|+||||++.+|. .|++||+.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999886 799999987532 123322211 112222222 33333445567899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNG 1207 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~ 1207 (1224)
|+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++....+
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998753 7899999999999876 999999999999999999999865222
Q ss_pred chhHHHHH
Q 047171 1208 GAYYSLIK 1215 (1224)
Q Consensus 1208 g~y~~l~~ 1215 (1224)
.....++.
T Consensus 235 ~~~~~~~~ 242 (343)
T PRK11153 235 PLTREFIQ 242 (343)
T ss_pred HHHHHHHh
Confidence 33344443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=384.48 Aligned_cols=218 Identities=29% Similarity=0.481 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999998853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC---CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|+.|++|||.++... .+ ++.+.++++.+++.+.+ ++.+++ .+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788999999999999999999999875311 11 23445555555543322 233444 5568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
.+.
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=380.37 Aligned_cols=224 Identities=33% Similarity=0.560 Sum_probs=189.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCCCCCcccHHHHHccCCCCC--CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGKEVA--TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~~~~--~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+|+||++.+|+.|++||+.++.... .++++.+.++..++. +........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLN----------KEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCC----------HHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999998753211 123333333333331 0123455678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhH
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~ 1211 (1224)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++++++.. +...|.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~ 228 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN-PQNEVT 228 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC-CCcHHH
Confidence 99999999999999999999999999875 37999999999999876 999999999999999999999864 233454
Q ss_pred HHH
Q 047171 1212 SLI 1214 (1224)
Q Consensus 1212 ~l~ 1214 (1224)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=388.35 Aligned_cols=212 Identities=32% Similarity=0.552 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEP--TLFAGTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+||||+| .+|..|++||+.++.. ..+ ++++.++++..++.++..+ ....||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 6888999999987632 122 2345555666665544333 3347999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
|||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998875 47899999999999854 999999999999999998765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=384.93 Aligned_cols=218 Identities=28% Similarity=0.474 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1049 (1224)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 359999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--CC-----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA-----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~-----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|..|++||+.++.. .. .++++.++++..++.+.+. ........+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678899999999999999999999987521 11 1234555555555543322 234456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 865
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=378.55 Aligned_cols=218 Identities=50% Similarity=0.830 Sum_probs=197.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|++|++++|+.|+.
T Consensus 17 ~l~~isl~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 17 ILDNISLRIK---PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ceeceEEEEc---CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 4666666653 5679999999999999999999999999999999999999888888888899999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
||+.++.+....+++.+.++..++++++..+|.|+++..+.++.+||||||||++||||++.+|++|||||||++||+.+
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 99998765445566777777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 489 ~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
...+.+.|.++.+|+|+|++||+++.+..||+|++|++|++++.|+++++++. .+.|..++
T Consensus 174 ~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~----~~~~~~~~ 234 (237)
T cd03252 174 EHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE----NGLYAYLY 234 (237)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc----cChHHHHH
Confidence 99999999988778999999999999988999999999999999999999876 56776655
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=382.74 Aligned_cols=217 Identities=30% Similarity=0.490 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-----CceEEECCccCCCC--CHH
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-----SGSVMVDERNIKSY--NLR 1050 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~~--~~~ 1050 (1224)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCC--C-CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKE--V-ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~-~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
.+|++++|+||++.+|..|++||+.++.. . .+. +++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 67899999999999999999999986421 1 122 23444555555432221 2334556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 9999999999999999999998
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 64
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=383.11 Aligned_cols=220 Identities=29% Similarity=0.490 Sum_probs=188.5
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--C
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--Y 1047 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~ 1047 (1224)
.+.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 357999999999963 369999999999999999999999999999999999986 479999999999853 4
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHccCCC---CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1048 NLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE---VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1048 ~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~---~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
+...+|++++|+||++.+|+.|++||+.++.. ..+. ++++++++..++.+.+ .....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 56678999999999999999999999987532 1222 3445555555543222 23345667789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChh
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 047171 1200 SLLSM 1204 (1224)
Q Consensus 1200 eLl~~ 1204 (1224)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99864
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=398.11 Aligned_cols=217 Identities=29% Similarity=0.455 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999877664 6789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCC--CCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEV--ATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~--~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||+|++.+|. .|++|||.|+... .+.+ .+.++++.. |++......+.+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l-----------~L~~~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----------GLPGSERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCCchhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 7999999987421 2222 233333333 3444445666789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++... +
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~-p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH-P 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999988754 7899999999999755 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 4333
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=388.41 Aligned_cols=220 Identities=32% Similarity=0.555 Sum_probs=186.6
Q ss_pred EEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHHH
Q 047171 978 IELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~~ 1051 (1224)
|+++||+++|++.+ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 24699999999999999999999999999999999999999999999999998653 3467
Q ss_pred HhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChHHHHHHH
Q 047171 1052 LRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1052 lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGGQrQRla 1126 (1224)
+|++|+||||+| .+|..|++|||.++.. ..+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 5888999999987632 2233333321 22333333 6653 345677899999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 4799999999999985 499999999999999999999876
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=379.16 Aligned_cols=211 Identities=32% Similarity=0.492 Sum_probs=180.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEecCCCCCc-ccHHHHHccCCCCC------CH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKEVA------TE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~~~------~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
||||+|.+|. .|++||+.++.... +. +++.++++..+ ++........+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-----------LDWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 9999999886 69999998753211 11 12333333333 333344455689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 99999999999999999999976
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=399.74 Aligned_cols=214 Identities=28% Similarity=0.512 Sum_probs=190.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+++
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 489999999996 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHccCCCC----------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYGKEV----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~~~~----------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+||||++.+ |+.|++||+.+++.. .+++.++++++.+++.++.. ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999987 678999999876421 12345667777777655432 33457999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|+|+++|+++.+.. ||||++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999876 57899999999999955 99999999999999999999876
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 3
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=381.52 Aligned_cols=212 Identities=34% Similarity=0.548 Sum_probs=181.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---HHHHhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~lR~ 1054 (1224)
++++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 146999999999999999999999999999999999999999999999999998776 456889
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCCC-----------CC---HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKEV-----------AT---EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~~-----------~~---deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
.++|+||++.+|. .|++||+.++... .+ ++++.++++.. |++......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCH
Confidence 9999999998886 6999999864311 11 12233333333 343344556778999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|||||++||||++++|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 37899999999999984 9999999999999999
Q ss_pred ChhHHh
Q 047171 1197 TQSSLL 1202 (1224)
Q Consensus 1197 t~~eLl 1202 (1224)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=378.80 Aligned_cols=219 Identities=31% Similarity=0.464 Sum_probs=194.7
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
.+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 4579999999852 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+++|+||++.+|++|++||+.++.. ..+.++.++++..++.+.+..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 99 ~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 99 RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3999999999999999999987632 234456677777888899999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1135 PMILLLDEATSALDSASENLVQEAL-EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|++|||||||++||+++...+.+.+ +.+.+++|+|+|||+++.+..||+|++|++|++++.|+++++... ...|.+.
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--~~~~~~~ 255 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL--RPDFSSK 255 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc--chHHHHH
Confidence 9999999999999999999888754 555568999999999999988999999999999999999999864 3455544
Q ss_pred H
Q 047171 1214 I 1214 (1224)
Q Consensus 1214 ~ 1214 (1224)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=375.28 Aligned_cols=217 Identities=29% Similarity=0.454 Sum_probs=180.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcce
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~i 1056 (1224)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 369999999999999999999999999999999999999999999999999988777654 6789
Q ss_pred EEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
+|+||++.+|.+ |++||+.++.......+..+. +.+.+..++ +++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 999999876432211111111 111222211 1233344556689999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 57899999999999866 99999999999999999988753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=387.63 Aligned_cols=216 Identities=26% Similarity=0.493 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCC--ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC----CCHHH
Q 047171 978 IELKNVFFSYPSRPD--QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS----YNLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----~~~~~ 1051 (1224)
|+++||+|+|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999973211 359999999999999999999999999999999999999999999999999853 34567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHccCCCC--CCHHHH----HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1052 LRSCIALVSQEP--TLFAGTIRQNIVYGKEV--ATEAEI----RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1052 lR~~i~~V~Qdp--~LF~gTIreNl~~~~~~--~~deei----~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
+|++++||+|+| .+|..|+.||+.++... .+.+++ .++++..++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 899999999998 78999999999876321 233332 2333333321 11234566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998865 4789999999999885 4999999999999999999998
Q ss_pred hh
Q 047171 1202 LS 1203 (1224)
Q Consensus 1202 l~ 1203 (1224)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 75
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=375.54 Aligned_cols=211 Identities=25% Similarity=0.445 Sum_probs=179.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||++.|++. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999642 24699999999999999999999999999999999999999999999999998764 366788999
Q ss_pred EEecCCCCC-cccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLF-AGTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF-~gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+| ..|++||+.++.. ..+. +++.++++..++.+ .......+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-----------KANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhChhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999986421 1122 22333344333322 2233445799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988778999999999999865 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=376.20 Aligned_cols=203 Identities=28% Similarity=0.451 Sum_probs=172.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH---HHhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---KLRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~ 1054 (1224)
|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999998776543 4788
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCC--CC----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKE--VA----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~--~~----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+++|+||+|.+|. .|++||+.++.. .. .++++.++++..++.++.. ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 9999999999886 599999986421 11 2334555666555544432 3345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 47899999999999876 999999999975
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=386.12 Aligned_cols=216 Identities=29% Similarity=0.535 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+.. .+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCC--CCCcccHHHHHccCCCC--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEP--TLFAGTIRQNIVYGKEV--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~gTIreNl~~~~~~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+|+||+| .+++.|++|||.++... .+. +++.++++..++.+++. .....||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 46778999999875321 232 33455555555555443 33457999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999988999999999999999999988753
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=385.04 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=182.4
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH----hc
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL----RS 1054 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l----R~ 1054 (1224)
.++|+++.|. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4667777775 3468999999999999999999999999999999999999999999999999987765543 46
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+++|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.+++ .....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHH
Confidence 8999999999885 699999986421 111 23344555555554443 33345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||++++|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 37899999999999865 999999999999999999999875
Q ss_pred CCCchhHH
Q 047171 1205 GNGGAYYS 1212 (1224)
Q Consensus 1205 ~~~g~y~~ 1212 (1224)
+...|.+
T Consensus 252 -~~~~~~~ 258 (269)
T cd03294 252 -PANDYVR 258 (269)
T ss_pred -cCcHHHH
Confidence 3444443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=385.43 Aligned_cols=220 Identities=32% Similarity=0.533 Sum_probs=182.9
Q ss_pred EEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC----CCHHH
Q 047171 978 IELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS----YNLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----~~~~~ 1051 (1224)
|+++|++++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1469999999999999999999999999999999999999999999999999853 34567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHHHHHHH
Q 047171 1052 LRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1052 lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQrQRla 1126 (1224)
+|++++||||+| .+|+.|++|||.++.. ..+.++.++.+ .+.+..+ |++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKA-----REMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999998 6888999999987632 22333332211 1222222 332 1234556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999999875
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 3
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=384.17 Aligned_cols=217 Identities=30% Similarity=0.534 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999887888889999
Q ss_pred EEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+|+||+| .++..|+.|||.++.. ..++++ +.++++.+++.++. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 4778899999986522 223333 34445555554432 234567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999988999999999999999999998764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=378.29 Aligned_cols=218 Identities=34% Similarity=0.573 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 45999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhccccccc--ccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDT--YCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt--~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
|+||+|.+|. .|++||+.++.. ..+.++.. ..+.+.+..+ |+.. .....+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 699999986521 11211111 1122333333 3332 345566789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998753 7999999999998765 999999999999999999999764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=382.48 Aligned_cols=220 Identities=27% Similarity=0.447 Sum_probs=188.3
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--C
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--Y 1047 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~ 1047 (1224)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHccCCC--CC--C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1048 NLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA--T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1048 ~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~--~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
+...+|++++|+||+|.+|..|++||+.++.. .. + ++++.++++..++.+++. ......+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 56678999999999999998999999986421 10 1 233455555555543321 233456678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|+++++|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999865 999999999999999999
Q ss_pred hHHhhc
Q 047171 1199 SSLLSM 1204 (1224)
Q Consensus 1199 ~eLl~~ 1204 (1224)
++++..
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 999864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=379.68 Aligned_cols=212 Identities=33% Similarity=0.520 Sum_probs=180.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH---HHHhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL---RKLRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~---~~lR~ 1054 (1224)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999961 3469999999999999999999999999999999999999999999999999887654 34788
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCCC-----------CC---HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKEV-----------AT---EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~~-----------~~---deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
+++|+||++.+|. .|++||+.++... .. ++++.++++.. |++........+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-----------GLADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCH
Confidence 9999999998886 6999999865311 01 12233333333 333344556678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999865 9999999999999999
Q ss_pred ChhHHh
Q 047171 1197 TQSSLL 1202 (1224)
Q Consensus 1197 t~~eLl 1202 (1224)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=395.09 Aligned_cols=212 Identities=33% Similarity=0.535 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||+|++.+|. .|++|||.|+.. ..+. +++.++++..++.++..+. ..+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRK-----------PHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 599999998642 1222 3455556666665554443 4579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||+++|++||||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999998764 7899999999998755 999999999999999999999886
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=394.57 Aligned_cols=212 Identities=31% Similarity=0.460 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999963 459999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCC------CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEV------ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~------~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+||+|++.+|. .|++||+.++... .+. +++.++++..++.++ ......+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 99999999997 5999999986321 122 234444444444333 3344568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999999766 9999999999999999999998
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
.+
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 76
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=380.49 Aligned_cols=219 Identities=30% Similarity=0.465 Sum_probs=187.0
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCC--CCC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIK--SYN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~--~~~ 1048 (1224)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++. ..+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 459999999999999999999999999999999999987 58999999999886 356
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCCC--CC---HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV--AT---EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~--~~---deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
...+|++++|+||++.+|..|++||+.++... .. ++++.++++..++.+ +++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 67789999999999999989999999876321 11 233445555554432 2223344566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-----------CE
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKN-----------GK 1191 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~-----------G~ 1191 (1224)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778899999999999865 999999996 67
Q ss_pred EEEecChhHHhhc
Q 047171 1192 VVEQGTQSSLLSM 1204 (1224)
Q Consensus 1192 Ive~Gt~~eLl~~ 1204 (1224)
++|.|++++++..
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=381.08 Aligned_cols=218 Identities=30% Similarity=0.419 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCC--CCCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIK--SYNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~~~~ 1049 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999987 4556
Q ss_pred HHHhcceEEEecCCCCCcc-cHHHHHccCCC--C--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1050 RKLRSCIALVSQEPTLFAG-TIRQNIVYGKE--V--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~~--~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
..+|++++|+||++.+|.. |++||+.++.. . .+. +++.++++..++.+.+ .........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHH
Confidence 6788999999999999975 99999986421 1 112 2344444444443222 12234566789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChh
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999865 9999999999999999999
Q ss_pred HHhhc
Q 047171 1200 SLLSM 1204 (1224)
Q Consensus 1200 eLl~~ 1204 (1224)
+++..
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 99864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=375.16 Aligned_cols=216 Identities=28% Similarity=0.519 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998766544 46899
Q ss_pred EEecCCCC-CcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1058 LVSQEPTL-FAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1058 ~V~Qdp~L-F~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
|+||++.+ +..|++||+.++.. ..+.++..+ .+.+++..+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56899999986532 122222111 123344433 555556667778999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 47899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=384.97 Aligned_cols=215 Identities=27% Similarity=0.512 Sum_probs=184.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~ 1054 (1224)
.|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999962 346999999999999999999999999999999999999999999999999984 344667899
Q ss_pred ceEEEecCC--CCCcccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1055 CIALVSQEP--TLFAGTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1055 ~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
+++|+||+| .+|+.|++||+.++.. ..+.+ .+.++++..++.+ .......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 999999998 5788999999987532 12322 2344444444433 334556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 789999999999987 499999999999999999999876
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 3
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=376.27 Aligned_cols=216 Identities=33% Similarity=0.507 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH---HHh
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---KLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1053 (1224)
|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999876654 357
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++++|+||++.+|. .|++||+.++.. ..+ .+++.++++..+ ++........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG-----------LEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 89999999999997 699999986421 112 123334444433 333344455689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999866 99999999999999999999875
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=373.37 Aligned_cols=203 Identities=35% Similarity=0.572 Sum_probs=172.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999987654 3578899
Q ss_pred EEecCCCCCc-ccHHHHHccCCCC--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKEV--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||+|.+|. .|++||+.++... .+. +++.++++..++ +........+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL-----------EGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999998886 6999999865321 122 223344444333 333444456899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|+++|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999998866 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=382.45 Aligned_cols=218 Identities=28% Similarity=0.447 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 469999999999999999999999999999999999865 689999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCCC---C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA---T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~---~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|++|++||+.++.... . ++.+.++++..++.+. +.......+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-------VKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-------hHHHHhcCcccCCHHHH
Confidence 56789999999999999999999998652111 1 1223444444333211 11233456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 865
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=366.35 Aligned_cols=200 Identities=38% Similarity=0.558 Sum_probs=181.4
Q ss_pred EEEEEEEEECCCCCC--ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPD--QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 5
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++|+||+|.+|++|++||+.++.. .++++.+++++.+++.+++..+|.|+++.+.+.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3566777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 047171 1136 MILLLDEATSALDSASENLVQE-ALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGK 1191 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~-~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~ 1191 (1224)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 566554 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=394.41 Aligned_cols=213 Identities=30% Similarity=0.478 Sum_probs=184.1
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC--ceEEECCccCCCCCHHHHh
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS--GSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~~~~~~lR 1053 (1224)
|.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++.+.++ .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999963 359999999999999999999999999999999999999999 999999999987665 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1054 SCIALVSQEPTLFAG-TIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~g-TIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++++||+|++.+|.. |++|||.|+.. ..+.+ ++.++++..++. ........+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~~~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-----------DAAAHLPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----------chhhCChhhCCHHHHHHHH
Confidence 789999999999964 99999997632 12332 233444444443 3344455689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV---GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|||||+++|++||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988754 6899999999999765 9999999999999999999998
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 228 ~~ 229 (362)
T TIGR03258 228 DA 229 (362)
T ss_pred hC
Confidence 76
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=378.25 Aligned_cols=218 Identities=28% Similarity=0.427 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCCCCHHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~~~~~ 1051 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcceEEEecCCCCC-cccHHHHHccCCCC----CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1052 LRSCIALVSQEPTLF-AGTIRQNIVYGKEV----AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~----~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
+|++++|+||+|.+| +.|++||+.++... .. ++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 999999999999755 68999999865310 11 234455555555433221 123344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 865
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=384.64 Aligned_cols=217 Identities=28% Similarity=0.501 Sum_probs=182.4
Q ss_pred cEEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC--------
Q 047171 977 FIELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS-------- 1046 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------- 1046 (1224)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997432 1359999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHH----HHHHHHHhHHHHHHhc
Q 047171 1047 ----------------YNLRKLRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEI----RKAAVLANAHEFISST 1102 (1224)
Q Consensus 1047 ----------------~~~~~lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei----~~al~~a~l~~~I~~l 1102 (1224)
.+...+|++++||||+| .+|..|++|||.++.. ..+.+++ .++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~--------- 152 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV--------- 152 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc---------
Confidence 13467889999999986 6888999999987632 2333333 3333333
Q ss_pred ccccc-cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh
Q 047171 1103 EDGYD-TYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK 1180 (1224)
Q Consensus 1103 p~gld-t~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~ 1180 (1224)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+..
T Consensus 153 --gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 153 --GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred --CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 332 23445667899999999999999999999999999999999999999999998875 48999999999998755
Q ss_pred -cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1181 -ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1181 -aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||++|++|++++.|+++++.+.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=349.44 Aligned_cols=208 Identities=33% Similarity=0.549 Sum_probs=176.4
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH---HHhccc
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK---WLRSQM 393 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~i 393 (1224)
-|++++|+|+|+++ ++++.++|+||||||||||+++|.|+..|++|+|.++|+|+.+++.+ .+|+++
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 48888999888753 46789999999999999999999999999999999999999988754 468999
Q ss_pred EEecCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHh
Q 047171 394 GLVNQEPILFST-SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal 468 (1224)
|+++|.-.||+. ||+||+.|... ..+++++.+.+. . -++.. |+... ....+++||||++.|+|||||+
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~-~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL-M----KLELV--GLRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHH-H----HHHhc--CCChhhhhhCchhhcchHHHHHHHHHHH
Confidence 999999999977 99999998532 233444433221 1 12222 55555 3446789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
..||+|+++|||||+|||.+...+.+.|+++++ |.|+|+|||+++++.. ||+|+++.||+|+..|+.+|+.+.
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999998887653 8899999999999987 999999999999999999999886
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.22 Aligned_cols=217 Identities=31% Similarity=0.491 Sum_probs=182.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---------
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN--------- 1048 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--------- 1048 (1224)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 46999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcceEEEecCCCCCc-ccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1049 ----LRKLRSCIALVSQEPTLFA-GTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1049 ----~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
...+|++++|++|++.+|. .|++||+.++.. ....++..+ .+.+.+..+ |++........+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2467899999999999885 799999987421 112222111 122333332 3444445566789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
||||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 7899999999999865 99999999999999999
Q ss_pred hhHHhhc
Q 047171 1198 QSSLLSM 1204 (1224)
Q Consensus 1198 ~~eLl~~ 1204 (1224)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9999865
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=374.95 Aligned_cols=216 Identities=26% Similarity=0.469 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcce
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~i 1056 (1224)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 459999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEecCCCCCcc-cHHHHHccCCCC--CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~~--~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++.+|.+ |++||+.++.+. ...++.. ..+.+.+..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875321 1222211 1223344433 55555566777899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999988765 99999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=380.03 Aligned_cols=203 Identities=33% Similarity=0.500 Sum_probs=175.6
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. .++++++|+|||||||||+|++|+|+.+|++|+|.|||.++++++++. ++||+|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamV 80 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMV 80 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEE
Confidence 47888888888753 356799999999999999999999999999999999999999998876 689999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc
Q 047171 397 NQEPILFST-SIKENILIGKPGA--S----METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI 469 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~ 469 (1224)
+|+..||+. ||+|||+||.... . ++++.++++..++ +..+..++.+|||||||||||||||+
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-----------~~lL~r~P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-----------EHLLNRKPLQLSGGQRQRVALARALV 149 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-----------hhHHhcCcccCChhhHHHHHHHHHHh
Confidence 999999976 9999999986532 2 3445555555544 44556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
++|++++||||+|+||+.....+...|+++. -+.|+|.|||+..++.. ||||.||++|+|.+.|++.|+..++
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 9999999999999999999888888887754 37899999999998876 9999999999999999999998764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=370.70 Aligned_cols=207 Identities=24% Similarity=0.446 Sum_probs=175.5
Q ss_pred EEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 978 IELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
|+++||+++|+++.. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 456788999
Q ss_pred EEEecCCCCCcc-cHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+|+||+|.+|.. |++||+.+... ..+. +++.++++..+ ++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-----------MEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 1122 23334444443 333444566789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999998865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=378.35 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC--C---CCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--P---QSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--~~~ 1049 (1224)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999997 3 58999999998863 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC---CCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---ATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|..|++||+.++... .++++ +.++++..++.+++ .......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 6788999999999999999999999875321 12222 33334444443322 1233456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+++++|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
+.+
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 865
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=395.24 Aligned_cols=212 Identities=29% Similarity=0.474 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999963 459999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++||+.++.. ..+. +++.++++..++.+ .......+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-----------~~~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999997632 1222 23444444444433 333445689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988753 7899999999998865 999999999999999999999875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=379.10 Aligned_cols=219 Identities=28% Similarity=0.440 Sum_probs=187.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 1048 (1224)
..|+++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 3699999999995 3469999999999999999999999999999999999997 579999999999864 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCCC---CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
...+|+.++||||++.+|..|++||+.++... .+ ++++.++++..++.+++ +...+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHH
Confidence 66789999999999999999999999875221 12 23344445555543332 234556778899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|||++||||++++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999999
Q ss_pred Hhhc
Q 047171 1201 LLSM 1204 (1224)
Q Consensus 1201 Ll~~ 1204 (1224)
+...
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=366.26 Aligned_cols=203 Identities=33% Similarity=0.546 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
++++|++|+|+++ +++++++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++||||
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 5677777777643 367799999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCcccHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 398 QEPI-LFSTSIKENILIGKPG-------AS---METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 398 Q~~~-lf~~ti~~ni~~g~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
|++. -|.-||+|-+.+|+-. .+ .+.+.++.+..++.++ ..+...+||||||||+.|||
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHHHHHH
Confidence 9974 5666999999999632 12 2245566666655554 45556889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchh-hccCEEEEEeCceEEeecChHHHHhh
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTI-RKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~-~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||+++|+||+||||||+||...+-.+.+.++++. +|+|+|+|.|+++.. +.||++++|++|+++.+|+++|.+..
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 9999999999999999999999999999998865 489999999999887 55999999999999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=378.71 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCCC--CH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSY--NL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 6999999999963 4599999999999999999999999999999999999985 799999999988653 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
..+|+.++|+||++.+|+.|++||+.++.. ..+.+ ++.++++.+++.+.+ ..........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999986521 12222 234444444432211 12234556689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999866 9999999999999999999998
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 64
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=377.48 Aligned_cols=218 Identities=29% Similarity=0.464 Sum_probs=183.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC--C---CCceEEECCccCCCC--CH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--P---QSGSVMVDERNIKSY--NL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~~--~~ 1049 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 359999999999999999999999999999999999954 6 489999999998643 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC---CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE---VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~---~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++||||++.+|+.|++||+.++.. ...+ +++.++++..++.+.+ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 1111 2333444444433222 2334566778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
++.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 865
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=380.70 Aligned_cols=216 Identities=31% Similarity=0.566 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+|+||+| .++..|++|||.++.. ..+.++ +.++++..++ +........+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM-----------EDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHhhCCcccCCHHHHHHHHHH
Confidence 9999998 4567899999987532 123333 2333333343 3334455578999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999888999999999999999999988764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=385.77 Aligned_cols=225 Identities=26% Similarity=0.382 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCC----------CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 977 FIELKNVFFSYPSRP----------DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
.|+++|++++|+.+. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996421 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEEecCC--CCC-cccHHHHHccCC----CCCCHHHHH----HHHHHHhHHHHHHhcccccccccCC
Q 047171 1047 YNLRK---LRSCIALVSQEP--TLF-AGTIRQNIVYGK----EVATEAEIR----KAAVLANAHEFISSTEDGYDTYCGE 1112 (1224)
Q Consensus 1047 ~~~~~---lR~~i~~V~Qdp--~LF-~gTIreNl~~~~----~~~~deei~----~al~~a~l~~~I~~lp~gldt~vge 1112 (1224)
++.+. +|++++||+|+| .+| ..||.|||.++. +..+.++.. ++++.+++. + .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~------~----~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL------P----NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC------h----HHhcC
Confidence 87543 678999999999 477 479999997531 123444433 233333321 1 12345
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeC
Q 047171 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKN 1189 (1224)
Q Consensus 1113 ~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~ 1189 (1224)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5678999999999999999999999999999999999999999999998753 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhhcCCCchhHH
Q 047171 1190 GKVVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1190 G~Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
|+|+|.|++++++++ +...|.+
T Consensus 238 G~ive~g~~~~i~~~-~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHN-PLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcC-CCCHHHH
Confidence 999999999999876 3445654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=386.34 Aligned_cols=217 Identities=29% Similarity=0.492 Sum_probs=182.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+++
T Consensus 7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 699999999996 346999999999999999999999999999999999999999999999999997654 4578999
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
|||||++.+|. .|++||+.+... ..+..+..+.+ ..+.+.+ .++...++.+ .+||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~-~l~~~~~~~~----~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV--PPLLEFA-KLENKADAKV----GELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHc-CCchHhcCch----hhCCHHHHHHHHHHHHHhC
Confidence 99999999885 699999986422 12333222211 1112221 2333445555 4799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++|||||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999875 47899999999999976 999999999999999999999764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=368.33 Aligned_cols=203 Identities=25% Similarity=0.470 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|++ .++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 36999999999999 99999999999999999999999999999999999998766 77899999
Q ss_pred EEecCCCCCcc-cHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.++. + ....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------K----KKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------h----CchhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976321 112 23445555555554432 2 2345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988777999999999999865 9999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=374.42 Aligned_cols=218 Identities=33% Similarity=0.546 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC--------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN-------- 1048 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1048 (1224)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999963 35999999999999999999999999999999999999999999999999886542
Q ss_pred HHHHhcceEEEecCCCCCc-ccHHHHHccCC---CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1049 LRKLRSCIALVSQEPTLFA-GTIRQNIVYGK---EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~---~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
...+|++++||||++.+|. .|++||+.++. .....++..+. +.+.+..+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3567889999999999885 79999997641 11122222111 12333332 44444456677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 47899999999999866 9999999999999999999997
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 64
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.11 Aligned_cols=218 Identities=30% Similarity=0.496 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1049 (1224)
.|+++|++|+|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999998854 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC--C-CH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV--A-TE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~--~-~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++++.. .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5678899999999999999999999865321 1 11 2333444444432110 1123455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999999866 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=375.07 Aligned_cols=218 Identities=28% Similarity=0.485 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-----CceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-----SGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 45999999999999999999999999999999999999987 6999999998864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--C-CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--V-ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~-~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|+.++||||+|.+|+.|++||+.++.. . ... +.+.++++..++.+.+ .......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 678999999999999999999999987531 1 111 2233344444443332 2334567788999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988678999999999999877 899999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 765
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=381.92 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCC---CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC-HHHH
Q 047171 977 FIELKNVFFSYPSRP---DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN-LRKL 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-~~~l 1052 (1224)
-|+++|++++|++.. ++++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987654 4567
Q ss_pred hcceEEEecCCC--CCcccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1053 RSCIALVSQEPT--LFAGTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1053 R~~i~~V~Qdp~--LF~gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++..++.++.. ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 899999999984 677799999987631 112 234555555555554433 3446799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999999889999999999999999999987
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=368.12 Aligned_cols=199 Identities=29% Similarity=0.527 Sum_probs=171.2
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999631 469999999999999999999999999999999999999999999999998754 457789999
Q ss_pred EecCC--CCCcccHHHHHccCCCCC--CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1059 VSQEP--TLFAGTIRQNIVYGKEVA--TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1059 V~Qdp--~LF~gTIreNl~~~~~~~--~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+||+| .+|..|++||+.++.+.. .++++.++++..++.++.. .....||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998764322 2345666666666655433 33357999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999875 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=380.99 Aligned_cols=217 Identities=29% Similarity=0.529 Sum_probs=187.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC---ceEEECCccCCCCCHHHH
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS---GSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~idG~di~~~~~~~l 1052 (1224)
+.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2469999999999999999999999999999999999999987 899999999988777788
Q ss_pred hcceEEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1053 RSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1053 R~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
|++++||||+| .+++.|++|||.++.. ..+.++ +.++++..++.++ ......+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY-----------IDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHH
Confidence 99999999998 4678999999987532 223333 4455555555443 334456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999887
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=375.12 Aligned_cols=219 Identities=31% Similarity=0.491 Sum_probs=185.6
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1048 (1224)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3599999999999999999999999999999999999863 68999999999864 45
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCC--C-CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--V-AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~-~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
...+|++++|+||++.+|+.|++||+.++.. . .+ ++++.++++.+++.+.+ .......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHH
Confidence 5678999999999999999999999987521 1 11 23344444444443222 223345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998866 99999999999999999999
Q ss_pred Hhhc
Q 047171 1201 LLSM 1204 (1224)
Q Consensus 1201 Ll~~ 1204 (1224)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 9765
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=362.02 Aligned_cols=216 Identities=30% Similarity=0.471 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc---cCCCCCHHHHh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER---NIKSYNLRKLR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~~~~lR 1053 (1224)
.|+++|++..|+ ..++++||||+|+.||.+|+.||||||||||+++|.|+..|++|.|.+||. |.+++ +.-.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 378889999886 346899999999999999999999999999999999999999999999999 77663 3445
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC----CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE----VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~----~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
++||+|+|+..||. .||++||.||.+ ..+ ...+.+.++.+++..+-.. .+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 78999999999885 899999999962 112 2344555566665544333 356899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
+||||||...|++||||||.++||+.-...+++-|++.. -+.|+++|||+.+.+.. ||||+||++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999998865 37899999999998755 999999999999999999999
Q ss_pred hhcCCCch
Q 047171 1202 LSMGNGGA 1209 (1224)
Q Consensus 1202 l~~~~~g~ 1209 (1224)
... ++..
T Consensus 226 ~~~-P~s~ 232 (345)
T COG1118 226 YDH-PASR 232 (345)
T ss_pred hcC-CCcc
Confidence 876 3443
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=378.85 Aligned_cols=222 Identities=27% Similarity=0.463 Sum_probs=185.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCCCC--HH
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKSYN--LR 1050 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~~--~~ 1050 (1224)
-+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 47899999996 3469999999999999999999999999999999999986 46999999999886543 34
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCC--CC--C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA--T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~--~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
.+|++++|+||++.+|.+|++||+.++.. .. . ++++.++++..++.+.+ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 57899999999999999999999986521 11 1 22344445554443221 2234556778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hhcCCCchh
Q 047171 1202 LSMGNGGAY 1210 (1224)
Q Consensus 1202 l~~~~~g~y 1210 (1224)
.+. +...|
T Consensus 236 ~~~-~~~~~ 243 (251)
T PRK14244 236 FKN-PQSSK 243 (251)
T ss_pred hcC-CCChH
Confidence 875 34433
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=379.29 Aligned_cols=220 Identities=30% Similarity=0.479 Sum_probs=188.0
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--C
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--Y 1047 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~ 1047 (1224)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999963 3599999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHccCCC--CC-C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1048 NLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA-T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1048 ~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~-~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
+...+|++++|+||++.+|++|++||+.++.. .. . ++++.++++..++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999986521 11 1 123455555555433322 3445667889999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChh
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
||||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred HHhhc
Q 047171 1200 SLLSM 1204 (1224)
Q Consensus 1200 eLl~~ 1204 (1224)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=369.56 Aligned_cols=209 Identities=25% Similarity=0.430 Sum_probs=178.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999988653 356788999
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.++. .....+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999887 499999976421 111 23445555555554432 23345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 7899999999999876 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=394.14 Aligned_cols=211 Identities=34% Similarity=0.489 Sum_probs=177.1
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH----hcceEEEecCCCCCc-c
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL----RSCIALVSQEPTLFA-G 1068 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Qdp~LF~-g 1068 (1224)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876654 468999999999996 5
Q ss_pred cHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 047171 1069 TIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142 (1224)
Q Consensus 1069 TIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDE 1142 (1224)
|++||+.++.. ..+ ++++.++++..++.++ ......+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~-----------~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENY-----------AHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987531 112 2334445555554443 334446899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1143 ATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1143 aTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
|||+||+.+.+.+++.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+.+.+.+.++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 999999999999999998874 47899999999999865 99999999999999999999987632333344443
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=380.68 Aligned_cols=215 Identities=28% Similarity=0.501 Sum_probs=185.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999999887778889999
Q ss_pred EEEecCC--CCCcccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEP--TLFAGTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp--~LF~gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+||||+| .+|+.|++||+.++.. ..+.+ .+.++++..++.++. ......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHH
Confidence 9999998 4788999999986531 22332 344445555544433 334468999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||||++|++|++++.|++++++..
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988753 789999999999985 5999999999999999999999763
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=371.99 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=178.0
Q ss_pred cEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---H
Q 047171 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---L 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---l 1052 (1224)
.++++||+++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1053 R-SCIALVSQEPTLFAG-TIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1053 R-~~i~~V~Qdp~LF~g-TIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
| +.++|+||++.+|.. |++||+.++.. ..+. +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 689999999998875 99999986321 1122 2233333333 44444555667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999999999999999999998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=366.14 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=177.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999988764 56788999
Q ss_pred EEecCCCCC-cccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1058 LVSQEPTLF-AGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1058 ~V~Qdp~LF-~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
||||++.+| +.|++||+.++.. ..+++++.++++..++.+... .....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 5799999986531 224566777777776655432 33457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 47899999999999865 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=356.68 Aligned_cols=178 Identities=38% Similarity=0.681 Sum_probs=166.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+.+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999988766 667889999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=373.06 Aligned_cols=211 Identities=27% Similarity=0.473 Sum_probs=179.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcce
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~i 1056 (1224)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877655 47789
Q ss_pred EEEecCCCCCcc-cHHHHHccCCCCC--CHHH-HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKEVA--TEAE-IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~~~--~dee-i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+|+||++.+|.. |++||+.++.... .+++ ..++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999985 9999998753221 1111 122222211 2233344556689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++|++|||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998764 7899999999999986 999999999999999999997
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=376.44 Aligned_cols=226 Identities=28% Similarity=0.460 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCCC--CH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSY--NL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1049 (1224)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999988653 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC---CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE---VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~---~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||+|.+|..|++||+.++.. ... ++++.++++..++.+.+ +........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 111 22344455555543322 1234566778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999999
Q ss_pred hhcCCCchhHHH
Q 047171 1202 LSMGNGGAYYSL 1213 (1224)
Q Consensus 1202 l~~~~~g~y~~l 1213 (1224)
.+. +...|.+.
T Consensus 233 ~~~-~~~~~~~~ 243 (250)
T PRK14262 233 VER-PKNKLTEE 243 (250)
T ss_pred HhC-CCChHHHH
Confidence 764 23334443
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=371.60 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC--CHHHHhcc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY--NLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~--~~~~lR~~ 1055 (1224)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4599999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++|+||++.+|. .|++||+.++.. ..+.++.++ .+.+.+..+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 699999987521 112222211 122333333 455555566678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999999999999998764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=378.97 Aligned_cols=213 Identities=29% Similarity=0.478 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCC----------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEV----------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~----------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+|+||++.++. .|++||+.++... ..++++.++++..++.+++. ....+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHHHH
Confidence 99999987665 5999999875210 11234555666665544332 33357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+||||++.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999875 27899999999999865 9999999999999999999986
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=375.14 Aligned_cols=219 Identities=24% Similarity=0.436 Sum_probs=185.1
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC--C---CCceEEECCccCCCC--C
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--P---QSGSVMVDERNIKSY--N 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~~--~ 1048 (1224)
+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 57999999999963 459999999999999999999999999999999999986 4 589999999998643 4
Q ss_pred HHHHhcceEEEecCCCCCc-ccHHHHHccCCC--C-CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1049 LRKLRSCIALVSQEPTLFA-GTIRQNIVYGKE--V-ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~--~-~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
...+|++++|+||++.+|. .|++||+.++.. . .+. +++.++++..++.+++. ......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 5568899999999999987 699999986421 1 122 23444444544433221 2234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChh
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 047171 1200 SLLSM 1204 (1224)
Q Consensus 1200 eLl~~ 1204 (1224)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 99865
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=378.73 Aligned_cols=214 Identities=32% Similarity=0.536 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC-HHHHhcce
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN-LRKLRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-~~~lR~~i 1056 (1224)
|+++|++++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 245999999999999999999999999999999999999999999999999998765 46788899
Q ss_pred EEEecCCC--CCcccHHHHHccCCCC--CCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEPT--LFAGTIRQNIVYGKEV--ATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp~--LF~gTIreNl~~~~~~--~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+|+||+|. +++.|++|||.++... .+.+ ++.++++..+ ++......+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIG-----------LEKYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHHHhcCCcccCCHHHHHHHHHH
Confidence 99999985 5778999999876321 2222 2333333333 33334455678999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||++.+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998865 48899999999999988999999999999999999998653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=370.82 Aligned_cols=208 Identities=37% Similarity=0.517 Sum_probs=172.0
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH----H
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK----L 1052 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1052 (1224)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hcceEEEecCCCCCcc-cHHHHHccCCCC--CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~g-TIreNl~~~~~~--~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
|++++|+||++.+|.+ |++||+.++... .+.++.. ..+.+.+..+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 6789999999999976 999999875321 1111111 1122333332 4444445566789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
|++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998764 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=375.94 Aligned_cols=215 Identities=31% Similarity=0.506 Sum_probs=182.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC--------
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY-------- 1047 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~-------- 1047 (1224)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcceEEEecCCCCCc-ccHHHHHccCCC---CCCH----HHHHHHHHHHhHHHHHHhccccccccc-CCC
Q 047171 1048 -----NLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKE---VATE----AEIRKAAVLANAHEFISSTEDGYDTYC-GER 1113 (1224)
Q Consensus 1048 -----~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~---~~~d----eei~~al~~a~l~~~I~~lp~gldt~v-ge~ 1113 (1224)
....+|++++||||++.+|. .|++||+.++.. .... +++.++++.. |++... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV-----------GIDERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCChhhhhCC
Confidence 13567889999999999997 599999976420 1122 2233333333 333332 455
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 047171 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~ 1191 (1224)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 67899999999999999999999999999999999999999999999875 48999999999999986 99999999999
Q ss_pred EEEecChhHHhhc
Q 047171 1192 VVEQGTQSSLLSM 1204 (1224)
Q Consensus 1192 Ive~Gt~~eLl~~ 1204 (1224)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999999764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=376.03 Aligned_cols=218 Identities=30% Similarity=0.480 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc---cCC--CCceEEECCccCCCC--CH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF---YDP--QSGSVMVDERNIKSY--NL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl---~~p--~~G~I~idG~di~~~--~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 4599999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--CC-C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA-T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~-~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|..|++||+.++.. .. . +++++++++..++.+++ ++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 678899999999999999999999986421 11 1 12334444444433222 2334566778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 865
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=370.77 Aligned_cols=218 Identities=26% Similarity=0.423 Sum_probs=181.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
++|+||++.+|.+ |++||+.++....+.++..+.+ .+.+..++. ++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999984 9999998753222222222211 112222211 11122345568999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998875 48999999999998755 99999999999999999999975
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=371.96 Aligned_cols=228 Identities=35% Similarity=0.542 Sum_probs=204.7
Q ss_pred cccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh
Q 047171 323 YLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390 (1224)
Q Consensus 323 ~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 390 (1224)
...+.|+++|++++|++. .+++.++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...++
T Consensus 15 ~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 15 GLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred cCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 346789999999999752 25679999999999999999999999999999999999999988888889
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
+.|+||+|+|.+|++|++||+..... ...+++.++.+..++++++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999976432 23556777778888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHH
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYS 550 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~ 550 (1224)
+|++|||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. .+.|+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~---~~~~~ 250 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE---DGVFA 250 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc---chHHH
Confidence 999999999999999999999999998877789999999999999889999999999999999999998752 45566
Q ss_pred HHHH
Q 047171 551 KMVQ 554 (1224)
Q Consensus 551 ~~~~ 554 (1224)
+++.
T Consensus 251 ~~~~ 254 (257)
T cd03288 251 SLVR 254 (257)
T ss_pred HHHh
Confidence 6554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=373.36 Aligned_cols=222 Identities=23% Similarity=0.388 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998877665 4567
Q ss_pred eEEEecCCCCCcc-cHHHHHccCCCCCCH--HH---HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATE--AE---IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~~~~~d--ee---i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
++|+||++.+|.+ |++||+.++...... .. .........+.+++..+ |++........+||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999999999986 999999875321000 00 00000111223334333 4555556667789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|++++|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+++++|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998778999999999999976 99999999999999999999865
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=377.84 Aligned_cols=224 Identities=25% Similarity=0.440 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH---HHh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---KLR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1053 (1224)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4699999999999999999999999999999999999999999999999998876543 457
Q ss_pred cceEEEecCCCCCcc-cHHHHHccCCC---CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 SCIALVSQEPTLFAG-TIRQNIVYGKE---VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~g-TIreNl~~~~~---~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++|+||++.+|.+ |++||+.++.. ..+.+ .+.++++.. |++........+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV-----------GLRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 889999999999985 99999986421 11222 222233333 233333344568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999876 9999999999999999999998
Q ss_pred hcCCCchhHHHHH
Q 047171 1203 SMGNGGAYYSLIK 1215 (1224)
Q Consensus 1203 ~~~~~g~y~~l~~ 1215 (1224)
+. +...+..++.
T Consensus 233 ~~-~~~~~~~~~~ 244 (269)
T PRK11831 233 AN-PDPRVRQFLD 244 (269)
T ss_pred cC-CcHHHHHHHH
Confidence 64 3444555554
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=375.22 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCC--CCCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIK--SYNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~--~~~~ 1049 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5999999999963 369999999999999999999999999999999999986 37999999999885 3456
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC--C---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV--A---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~--~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
..+|++++|+||++.+|+.|++||+.++... . .++++.++++.+++.+++. ......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 1 1234455566666654442 22345667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEEE
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK---------NGKVVE 1194 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~---------~G~Ive 1194 (1224)
++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999866 99999998 899999
Q ss_pred ecChhHHhhc
Q 047171 1195 QGTQSSLLSM 1204 (1224)
Q Consensus 1195 ~Gt~~eLl~~ 1204 (1224)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999865
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=369.28 Aligned_cols=218 Identities=53% Similarity=0.851 Sum_probs=195.5
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|++|++.+|+.|++
T Consensus 16 ~l~~i~~~i~---~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 16 VLKDVSFTIP---AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 4555555543 5679999999999999999999999999999999999999888888888899999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
||+.++.+..+.+++.+.++..++.+.+..+|.|+++.++.++.+||||||||++|||||+.+|++|||||||++||+++
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999866556666777778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 489 ~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
...+.+.|.++.+|+|+|++||+++.+..||++++|++|++++.|+.+++... ...|++.+
T Consensus 173 ~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~----~~~~~~~~ 233 (236)
T cd03253 173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK----GGLYAEMW 233 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc----ccHHHHHH
Confidence 99999999887668999999999999988999999999999999999988764 44454443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=375.16 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1049 (1224)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 6999999999963 359999999999999999999999999999999999987 699999999998853 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--CCCHH-----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VATEA-----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~~de-----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||+|.+|..|++||+.++.. ..+++ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 12221 122222222221 1233344566778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 865
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=368.44 Aligned_cols=210 Identities=54% Similarity=0.884 Sum_probs=193.0
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
.++|++|+.+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|++|++.+|+.|++
T Consensus 17 ~l~~i~~~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (234)
T cd03251 17 VLRDISLDIP---AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93 (234)
T ss_pred ceeeeeEEEc---CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence 4677777764 5679999999999999999999999999999999999999888877888899999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
||+.++.+....+++.+.++..+++++++.+|.|+++..+.++.+||||||||++|||||+.+|+++||||||++||+.+
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 99999865555566777777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 489 ~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 174 ~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 174 ERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 99999999988789999999999999988999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=366.49 Aligned_cols=215 Identities=54% Similarity=0.878 Sum_probs=195.1
Q ss_pred cEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 327 EIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
+|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 46677777777531 2566999999999999999999999999999999999999988888888899999
Q ss_pred ecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 396 VNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 396 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
++|++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|++|
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999886655566777788888899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999988778999999999999988999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=376.14 Aligned_cols=220 Identities=30% Similarity=0.515 Sum_probs=188.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCCcc-cHHHHHccCCCC-------C---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKEV-------A---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~~-------~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
|+||++.+|.+ |+.||+.++... . .++++.++++..++.++ .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999998876 999999875210 0 12234444544444332 33455689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998875 47899999999999865 999999999999999999998652
Q ss_pred CCCchhHHHH
Q 047171 1205 GNGGAYYSLI 1214 (1224)
Q Consensus 1205 ~~~g~y~~l~ 1214 (1224)
..+.+.+
T Consensus 229 ---~~~~~~~ 235 (255)
T PRK11231 229 ---GLLRTVF 235 (255)
T ss_pred ---HHHHHHh
Confidence 3445554
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=376.39 Aligned_cols=229 Identities=31% Similarity=0.458 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCC------CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH
Q 047171 978 IELKNVFFSYPSR------PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~ 1051 (1224)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1356999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEecCCC--CC-cccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHH
Q 047171 1052 ---LRSCIALVSQEPT--LF-AGTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1052 ---lR~~i~~V~Qdp~--LF-~gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQ 1121 (1224)
+|+.++|+||+|. ++ ..|++||+.++.. ....++.. ..+.++++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 6788999999983 44 4799999964311 11111111 1122333332 343 23455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 7899999999999975 999999999999999999
Q ss_pred hHHhhcCCCchhHHHH
Q 047171 1199 SSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1199 ~eLl~~~~~g~y~~l~ 1214 (1224)
++++.. .+..+..+.
T Consensus 236 ~~~~~~-~~~~~~~~~ 250 (265)
T TIGR02769 236 AQLLSF-KHPAGRNLQ 250 (265)
T ss_pred HHHcCC-CCHHHHHHH
Confidence 999874 234444444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=375.09 Aligned_cols=218 Identities=28% Similarity=0.472 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCCCC-HH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSYN-LR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~~-~~ 1050 (1224)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999987663 45
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCC---CCCHHHHHHH----HHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKE---VATEAEIRKA----AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~---~~~deei~~a----l~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
.+|++++|+||+|.+|+.|+++|+.++.. ..++++..+. ++..++ +..+++.....+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999987531 1244443322 222222 222223455677889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999866 9999999999999999999998
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 75
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=368.10 Aligned_cols=209 Identities=29% Similarity=0.493 Sum_probs=172.6
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998877644 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1054 -SCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1054 -~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
++++|+||++.+|. .|++||+.++.. ..+.++..+ .+.+++..+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 68999999999885 699999986421 112111111 112233222 4444445556789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVV 1193 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Iv 1193 (1224)
|++++|+||||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=377.94 Aligned_cols=220 Identities=32% Similarity=0.525 Sum_probs=183.2
Q ss_pred EEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHHH
Q 047171 978 IELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~~ 1051 (1224)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHHHHHHH
Q 047171 1052 LRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1052 lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQrQRla 1126 (1224)
+|+.|+|+||+| .+|+.|++||+.++.. ..+.++..+.+ .+++..+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 889999999998 6888999999986521 12333332211 2222222 343 2234556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 47899999999999865 999999999999999999998653
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=368.24 Aligned_cols=205 Identities=34% Similarity=0.481 Sum_probs=172.6
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1469999999999999999999999999999999999999999999999998763 46789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.++ ......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99999999987 799999986521 111 2334444444444333 33444679999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEecCh
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIK--NGKVVEQGTQ 1198 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~--~G~Ive~Gt~ 1198 (1224)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 37899999999998765 99999999 7999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=384.55 Aligned_cols=226 Identities=27% Similarity=0.427 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCC-------CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 977 FIELKNVFFSYPSRP-------DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
.|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcceEEEecCCC--CCc-ccHHHHHccCC---CCCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1050 R---KLRSCIALVSQEPT--LFA-GTIRQNIVYGK---EVATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1050 ~---~lR~~i~~V~Qdp~--LF~-gTIreNl~~~~---~~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
. .+|++|+||||+|. |+. .|+.+|+.... ...+. +++.++++.+++. +..++ ....+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~~~~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR------PEHYD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCC------hHHhc----CCCcc
Confidence 4 56889999999994 554 58998886321 11122 2344444444442 12233 34567
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 9999999999999
Q ss_pred EecChhHHhhcCCCchhHHH
Q 047171 1194 EQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1194 e~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|.|+++++++. +...|.+.
T Consensus 235 e~g~~~~~~~~-p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNN-PRHPYTQA 253 (327)
T ss_pred EECCHHHHhcC-CCCHHHHH
Confidence 99999999986 34455543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=366.85 Aligned_cols=203 Identities=31% Similarity=0.527 Sum_probs=172.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998765543 57899
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|. .|++||+.++.. ..+.+ ++.++++..++. ........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999987521 11222 233334444443 33344556899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
++++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=389.58 Aligned_cols=213 Identities=32% Similarity=0.533 Sum_probs=182.8
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.++ .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 458999999999999999999999999999999999999999999999999987664 5789
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
++||+|++.+|. .|++|||.++.. ..+.. ++.++++..++.+ .......+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 999999999997 599999998742 12322 2334444444433 33345568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+++|++||||||||+||..+.+.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..+
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998887764 37899999999998755 999999999999999999999876
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=371.38 Aligned_cols=218 Identities=22% Similarity=0.424 Sum_probs=185.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 46999999999999999999999999999999999999999999999999998877644 5789
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++|+||++.+|. .|++||+.++.. ..+.++.+ ..+.+++..+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999887 599999987531 11222211 2233444444 455555666788999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998765 48899999999988765 999999999999999999998753
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=373.12 Aligned_cols=227 Identities=26% Similarity=0.427 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCCC--CH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSY--NL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999999763 489999999998776 45
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC--C-C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV--A-T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~--~-~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
...|+.++|+||++.+|+.|++||+.++... . + ++.+.++++..++.+ ++.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 6778899999999999999999999875321 1 1 123334444443322 223345667788999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999965 999999999999999999999
Q ss_pred hhcCCCchhHHHH
Q 047171 1202 LSMGNGGAYYSLI 1214 (1224)
Q Consensus 1202 l~~~~~g~y~~l~ 1214 (1224)
... +...+.+.+
T Consensus 236 ~~~-~~~~~~~~~ 247 (253)
T PRK14261 236 FEN-PHEELTENY 247 (253)
T ss_pred HhC-CCcHHHHHH
Confidence 765 233444443
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=377.59 Aligned_cols=221 Identities=29% Similarity=0.537 Sum_probs=182.8
Q ss_pred cEEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHH
Q 047171 977 FIELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~ 1050 (1224)
.|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChHHHHHH
Q 047171 1051 KLRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGGQrQRl 1125 (1224)
..|+.++|+||+| .+|..|++|||.++.. ..+.++..+. +.+++..+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6788999999998 5788899999986421 2233322211 12233322 4432 33455678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
+|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 47899999999999865 99999999999999999999875
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=374.48 Aligned_cols=219 Identities=30% Similarity=0.445 Sum_probs=186.5
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1048 (1224)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 4599999999999999999999999999999999999985 48999999998854 45
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCC---CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKE---VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~---~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
...+|++++|+||++.+|+.|++||+.++.. ..+ ++.+.++++.+++.+++. ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 5678899999999999999999999986421 111 123445555556544332 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-----CCEEEEe
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK-----NGKVVEQ 1195 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~-----~G~Ive~ 1195 (1224)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777999999999999876 99999998 5999999
Q ss_pred cChhHHhhc
Q 047171 1196 GTQSSLLSM 1204 (1224)
Q Consensus 1196 Gt~~eLl~~ 1204 (1224)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999999764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=374.55 Aligned_cols=222 Identities=28% Similarity=0.455 Sum_probs=189.3
Q ss_pred CCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCC--
Q 047171 973 PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIK-- 1045 (1224)
Q Consensus 973 ~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-- 1045 (1224)
+..+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CCCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 34567999999999963 3699999999999999999999999999999999999875 7999999998774
Q ss_pred --CCCHHHHhcceEEEecCCCCCcccHHHHHccCCC--C-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1046 --SYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--V-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1046 --~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
..+...+|+.++|+||++.+|.+|++||+.++.. . ..++++.++++.+++.+ ++.+..+.....
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCccc
Confidence 3345678899999999999999999999986521 1 11344555555555433 223344566778
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~ 1195 (1224)
||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988777899999999999965 999999999999999
Q ss_pred cChhHHhhc
Q 047171 1196 GTQSSLLSM 1204 (1224)
Q Consensus 1196 Gt~~eLl~~ 1204 (1224)
|+++++...
T Consensus 242 g~~~~~~~~ 250 (265)
T PRK14252 242 GATDTIFIK 250 (265)
T ss_pred CCHHHHHhC
Confidence 999999764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=371.18 Aligned_cols=204 Identities=31% Similarity=0.442 Sum_probs=176.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++ ..+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCce
Confidence 5999999999963 4699999999999999999999999999999999999999999999999865 3567899
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
+|++|++.+|+ .|++||+.++.....++++.++++..++.+ .......+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 699999987632222445555555555443 334455789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChh
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 37899999999999865 9999999999999998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=374.33 Aligned_cols=231 Identities=24% Similarity=0.392 Sum_probs=190.5
Q ss_pred cEEEEEEEEECCCC------CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH
Q 047171 977 FIELKNVFFSYPSR------PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~ 1050 (1224)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765666
Q ss_pred HHhcceEEEecCCC--CCc-ccHHHHHccCC---CCCC----HHHHHHHHHHHhHH-HHHHhcccccccccCCCCCCCCh
Q 047171 1051 KLRSCIALVSQEPT--LFA-GTIRQNIVYGK---EVAT----EAEIRKAAVLANAH-EFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~--LF~-gTIreNl~~~~---~~~~----deei~~al~~a~l~-~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
..+++++|+||+|. ++. -|+.+|+.+.. .... ++++.++++..++. +. . .....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH-------A----SYYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH-------H----hcCchhcCH
Confidence 66788999999985 444 48999986431 1111 23455555555552 22 1 223457999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|||||++||||++++|+||||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999987 9999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHHhh
Q 047171 1197 TQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+++++........+++++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhcc
Confidence 9999987634566777886553
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=372.05 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCCC--CH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKSY--NL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1049 (1224)
.|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 4599999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC--C-CH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV--A-TE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~--~-~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|+.|++||+.++... . +. +++.++++.+++.+.+ ..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 5678999999999999999999999865211 1 11 2344455555443222 2233456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999876 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=379.87 Aligned_cols=203 Identities=32% Similarity=0.516 Sum_probs=174.7
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. .++++++|+|||||||||++++|+||.+|++|+|.+||+++.+++++ ++.||+|
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~V 82 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMV 82 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccccee
Confidence 58888888888732 35779999999999999999999999999999999999999998876 5689999
Q ss_pred cCCCCCCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 397 NQEPILFST-SIKENILIGKP---GASME----TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+|+..||+. ||+|||.||.. ....+ ++.++.+..++.+ .-.+++++|||||||||||||||
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHHHHHh
Confidence 999999976 99999999975 11222 4455555554444 45567789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
..+|++||||||.||||.+-...++..++++. .|.|.|+|||+-++... +|||.||++|+|...|+++|+...+
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999998888887753 48999999999988755 9999999999999999999998764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=375.97 Aligned_cols=219 Identities=26% Similarity=0.466 Sum_probs=185.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 1048 (1224)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999963 469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCC--CC---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
...+|++++||||++.+|..|++||+.++.. .. .+++++++++..++...+. ......+.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 5678899999999999998999999986421 11 1334555555555432221 1234566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEE-EEeCCEEEEecChhHH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIV-VIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~-vl~~G~Ive~Gt~~eL 1201 (1224)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5699999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=379.35 Aligned_cols=222 Identities=29% Similarity=0.482 Sum_probs=181.9
Q ss_pred ccEEEEEEEEECCCCC--CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC----C-C
Q 047171 976 GFIELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS----Y-N 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----~-~ 1048 (1224)
+.|+++|++++|++++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997432 1359999999999999999999999999999999999999999999999998752 2 4
Q ss_pred HHHHhcceEEEecCC--CCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1049 LRKLRSCIALVSQEP--TLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
...+|++++|+||+| .+|..|++||+.++.. ..+.++..+.+. .+.+.+ .+|. ........+||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~---~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPE---DYVKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCCh---hHhcCChhhCCHHHHHH
Confidence 567889999999998 4778899999987532 123333222111 111211 1221 22345667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999998865 999999999999999999888
Q ss_pred hh
Q 047171 1202 LS 1203 (1224)
Q Consensus 1202 l~ 1203 (1224)
+.
T Consensus 239 ~~ 240 (289)
T PRK13645 239 FS 240 (289)
T ss_pred hc
Confidence 65
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=370.78 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1049 (1224)
.++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 459999999999999999999999999999999999874 389999999999865 346
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--C-CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--V-ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~-~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||+|.+|+.|++||+.++.. . .+. +++.++++.+++.+++.. .....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 678999999999999999999999986521 1 122 334555666666555432 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 765
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=366.01 Aligned_cols=201 Identities=29% Similarity=0.473 Sum_probs=172.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH---HHhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---KLRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~ 1054 (1224)
|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 34699999999999999999999999999999999999999999999999999877643 4788
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCC--CC----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKE--VA----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~--~~----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+++|+||+|.+|. .|++||+.++.. .. .+++++++++..++.++.. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 9999999999885 699999987421 11 1334555565555544332 2335799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~ 1191 (1224)
||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 48999999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=383.96 Aligned_cols=228 Identities=22% Similarity=0.364 Sum_probs=186.6
Q ss_pred cEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC---CceEEECCccCCCCCHHHH
Q 047171 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~~~~l 1052 (1224)
.++++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cceEEEecCC--CCCc-ccHHHHHccCC---CCCCHHHH----HHHHHHHhHHHHHHhcccccccccCCCCCCCC
Q 047171 1053 R----SCIALVSQEP--TLFA-GTIRQNIVYGK---EVATEAEI----RKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118 (1224)
Q Consensus 1053 R----~~i~~V~Qdp--~LF~-gTIreNl~~~~---~~~~deei----~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1118 (1224)
| ++|+||||+| .++. .|+.+|+.... ...+.++. .+.++.++ +|++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence 3 4899999999 3544 57777764221 11233332 22222222 34332 23567788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~ 1195 (1224)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988764 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCCchhHHH
Q 047171 1196 GTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1196 Gt~~eLl~~~~~g~y~~l 1213 (1224)
|+++++++. +...|.+.
T Consensus 244 g~~~~i~~~-p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQ-PSHPYSIG 260 (330)
T ss_pred CCHHHHHhC-CCCHHHHH
Confidence 999999986 45556553
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=363.04 Aligned_cols=210 Identities=30% Similarity=0.456 Sum_probs=186.6
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH----HHHhc
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL----RKLRS 1054 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~----~~lR~ 1054 (1224)
.+.|+.|+|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 469999999999999999999999999999999999999999999999998876542 34577
Q ss_pred ceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
.++|++|+|.+|+.|++||+.++.+ .++++.+++++..++.+++..+|.|+++..+....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998643 355667788888888888888999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 047171 1135 PMILLLDEATSALDSASENLVQE--ALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGK 1191 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~--~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~ 1191 (1224)
|++|||||||++||+.+.+.+.+ .++... .++|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 454443 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.22 Aligned_cols=212 Identities=30% Similarity=0.493 Sum_probs=183.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCC-CcccHHHHHccCCCCC------CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTL-FAGTIRQNIVYGKEVA------TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~L-F~gTIreNl~~~~~~~------~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+ +..|++||+.++.... .++.+.++++..++.+ ........||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998753211 1223444444444433 3334556899999999999999
Q ss_pred Hc------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1131 VL------KNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1131 ll------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
|+ .+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 47899999999999875 999999999999999999998
Q ss_pred hh
Q 047171 1202 LS 1203 (1224)
Q Consensus 1202 l~ 1203 (1224)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=383.11 Aligned_cols=228 Identities=22% Similarity=0.310 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC----CCceEEECCccCCCCCHHH
Q 047171 977 FIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP----QSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p----~~G~I~idG~di~~~~~~~ 1051 (1224)
.|+++|++++|+.+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++| ++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999974322 3599999999999999999999999999999999999984 8999999999999888776
Q ss_pred Hh----cceEEEecCCC--CCc-ccHHHHH----ccCCCCC---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCC
Q 047171 1052 LR----SCIALVSQEPT--LFA-GTIRQNI----VYGKEVA---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117 (1224)
Q Consensus 1052 lR----~~i~~V~Qdp~--LF~-gTIreNl----~~~~~~~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~L 1117 (1224)
+| ++|+||||+|. ++. .|+.+|+ ....... ..+++.++++.+++.+. .......+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 54 37999999995 332 3565554 3221111 12334555555554321 12234566789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
|||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 7899999999999854 99999999999999
Q ss_pred ecChhHHhhcCCCchhHHH
Q 047171 1195 QGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1195 ~Gt~~eLl~~~~~g~y~~l 1213 (1224)
.|+++++++. +...|.+.
T Consensus 235 ~g~~~~~~~~-p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRA-PRHPYTQA 252 (326)
T ss_pred ECCHHHHhhC-CCChHHHH
Confidence 9999999976 34556543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=364.65 Aligned_cols=201 Identities=37% Similarity=0.636 Sum_probs=170.9
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++|++++|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EecCC--CCCcccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1059 VSQEP--TLFAGTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1059 V~Qdp--~LF~gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
+||++ .+++.|++||+.++.. ..+.. ++.+.++..+ ++.........||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG-----------LEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999987522 11222 2333333333 3333445567899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~ 1191 (1224)
|+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998876 47899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=350.89 Aligned_cols=191 Identities=31% Similarity=0.481 Sum_probs=156.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
+++++|+++|++. .++++++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...+|||+
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vF 78 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVF 78 (248)
T ss_pred EEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEe
Confidence 4555555555431 36789999999999999999999999999999999999987432 34799999
Q ss_pred CCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.||+= ||+||+.+|.... +.+|- .+.+.+.++.. |+...-+..+.+||||||||+||||||+.+|+|
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~-----~~~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEA-----RERAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhH-----HHHHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 99999974 9999999987532 22211 11334555555 666666778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeC--ceEE
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQS--GRVI 530 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~--G~i~ 530 (1224)
|+||||++|||+.|...+++.+.++. .++|+++|||++++.-. +|||+||.+ |+|.
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999988753 47999999999999765 999999999 5553
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=373.98 Aligned_cols=216 Identities=31% Similarity=0.499 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCC--CCcccHHHHHccCCCC--CCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1057 ALVSQEPT--LFAGTIRQNIVYGKEV--ATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1057 ~~V~Qdp~--LF~gTIreNl~~~~~~--~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+|+||+|. ++..|+++|+.++... .+.+ ++.++++..++.+ .......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHHH
Confidence 99999994 4567899999875321 1222 2333444433322 23345568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999888999999999999999999998764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=350.91 Aligned_cols=193 Identities=36% Similarity=0.556 Sum_probs=157.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---H-hcccEEecCCCCCCc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---L-RSQMGLVNQEPILFS 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~-r~~i~~v~Q~~~lf~ 404 (1224)
.+++|+|..+ +++++||+||||||||||+++|.|+..|++|.|.++|+|+..++.+. + |++||||+|+..|++
T Consensus 20 ~L~~v~l~i~---~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 20 ALKDVNLEIE---AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred ecccceEEEc---CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 4556666653 57799999999999999999999999999999999999999887433 3 457999999999987
Q ss_pred c-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccccccc-CCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 047171 405 T-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVG-QFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480 (1224)
Q Consensus 405 ~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGq~qriaiARal~~~~~ililDE~ 480 (1224)
. |+.|||.+... .....+. ...+.+.++.+ |+..... .++.+|||||||||||||||+.+|+|++.|||
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~-----~~~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRR-----KRAAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHH-----HHHHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 6 99999985311 1111111 11122334444 5553444 67899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEe
Q 047171 481 TSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~ 531 (1224)
|++||.++.+.|.+.+.+.. .|+|+|+|||+......|||++.|.||++..
T Consensus 170 TgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred cccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999998873 4899999999999999999999999999543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=381.36 Aligned_cols=217 Identities=30% Similarity=0.478 Sum_probs=180.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999998653 35678999
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++.+|. .|++||+.+... ..+..+..+.++ .+.+.+ .+++.+++ ...+||||||||++|||||++
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~~-~l~~~~~~----~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEFA-RLESKADV----RVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHC-CChhHhcC----chhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 699999974321 123333322221 111211 22333344 445799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 47899999999999976 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=369.46 Aligned_cols=216 Identities=29% Similarity=0.495 Sum_probs=181.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC------CCCHHH
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK------SYNLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~------~~~~~~ 1051 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 35999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHccCC---CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1052 LRSCIALVSQEPTLFA-GTIRQNIVYGK---EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~-gTIreNl~~~~---~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+|++++|+||++.+|. .|++||+.++. ...+.++..+ .+.+++..+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 7899999999999987 49999997421 1112222111 123333333 45555555667899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++++|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999999875 47999999999999865 99999999999999999998764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=371.79 Aligned_cols=220 Identities=20% Similarity=0.432 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~ 1055 (1224)
.|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999996 3469999999999999999999999999999999999999999999999999988776654 556
Q ss_pred eEEEecCCCCCcc-cHHHHHccCCCCCC--------------HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGKEVAT--------------EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~~~~~--------------deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
++|+||+|.+|.. |++||+.++..... +.+..+. ...+.+++..+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999985 99999997531100 0000000 11223344443 5555666777899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999988753 7899999999999866 99999999999999999
Q ss_pred hhHHhh
Q 047171 1198 QSSLLS 1203 (1224)
Q Consensus 1198 ~~eLl~ 1203 (1224)
++++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 999865
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=386.49 Aligned_cols=208 Identities=28% Similarity=0.469 Sum_probs=175.0
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc----cCCCCCHHHHh----cceEEEecCCC
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER----NIKSYNLRKLR----SCIALVSQEPT 1064 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~----di~~~~~~~lR----~~i~~V~Qdp~ 1064 (1224)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+.+.+| ++++||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 67777665543 58999999999
Q ss_pred CCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1065 LFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1065 LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
+|+ .|++||+.++.. ..+. +.+.++++.+++.++ ......+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987632 1222 234445555554433 3344457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHH
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+ +.+.|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~-p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN-PANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC-cchHHHH
Confidence 999999999999999999999988753 7899999999999755 999999999999999999999875 3444443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=369.65 Aligned_cols=218 Identities=28% Similarity=0.451 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCC-CCCHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIK-SYNLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~~~~~ 1050 (1224)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999885 45667
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCC--CC-CH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA-TE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~-~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
.+|+.++|+||++.+|..|++||+.++.. .. .+ +++.++++.+++.+.+ .........+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 88999999999999999999999987532 11 11 2233344444443322 23344556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999987
Q ss_pred hc
Q 047171 1203 SM 1204 (1224)
Q Consensus 1203 ~~ 1204 (1224)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=375.39 Aligned_cols=213 Identities=28% Similarity=0.501 Sum_probs=180.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~~ 1055 (1224)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 45999999999999999999999999999999999999999999999999985 3345678899
Q ss_pred eEEEecCCC--CCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1056 IALVSQEPT--LFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1056 i~~V~Qdp~--LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
++||||+|. +|..|+.+|+.++.. ..+.++ +.++++..++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHH
Confidence 999999985 577899999986421 122222 3334444444332 233456899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999865 999999999999999999998764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=364.11 Aligned_cols=202 Identities=31% Similarity=0.479 Sum_probs=171.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH---HHHhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL---RKLRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~---~~lR~ 1054 (1224)
|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999632 359999999999999999999999999999999999999999999999999987654 34788
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
.++||||+|.+|. .|++||+.++.. ..+. +++.++++..++.+. ......+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 9999999999987 599999987521 1122 234444444444333 233445799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
|||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 57999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.99 Aligned_cols=218 Identities=29% Similarity=0.457 Sum_probs=183.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1049 (1224)
.++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999998853 456
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHccCCC---CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1050 RKLRSCIALVSQEPTLFA-GTIRQNIVYGKE---VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~---~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
..+|+.++|++|++.+|. .|++||+.++.. ..+. +.+.++++..++.+.+ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 678899999999999987 599999986421 1111 2334444444443222 223345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe------CCEEEE
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK------NGKVVE 1194 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~------~G~Ive 1194 (1224)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988777899999999999865 99999997 899999
Q ss_pred ecChhHHhhc
Q 047171 1195 QGTQSSLLSM 1204 (1224)
Q Consensus 1195 ~Gt~~eLl~~ 1204 (1224)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.24 Aligned_cols=216 Identities=23% Similarity=0.424 Sum_probs=184.8
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3469999999999999999999999999999999999999999999999999876 4567889999
Q ss_pred EEecCCCCCcc-cHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
|+||+|.+|.+ |++||+.+... ..+.++..+. +.+.+..+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999976421 1122222211 12233332 455555566678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999999876 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=365.66 Aligned_cols=209 Identities=26% Similarity=0.435 Sum_probs=179.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCCCCCcccHHHHHccCC---CCC-CHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHHHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGK---EVA-TEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~---~~~-~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+|+||++.+|+.|++||+.++. +.. .++++.+.++.. |+. +.......+||||||||++|||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHc-----------CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999998642 111 122233333333 332 334566778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEe-CCEEEEecChh
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIK-NGKVVEQGTQS 1199 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~-~G~Ive~Gt~~ 1199 (1224)
+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999875 3789999999999998899999995 66777899985
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.93 Aligned_cols=211 Identities=34% Similarity=0.486 Sum_probs=179.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999876553 478899
Q ss_pred EEecCCCCCcc-cHHHHHccCCCC--CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKEV--AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~~--~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||+|.+|.+ |++||+.++... .+ ++++.++++..++.+ .......+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-----------LGDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999875321 11 122333333333332 2334456899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++++|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 7899999999999866 999999999999999999999764
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=414.17 Aligned_cols=100 Identities=32% Similarity=0.525 Sum_probs=92.2
Q ss_pred cccc-ccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 047171 1105 GYDT-YCGERGVQLSGGQKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ 1179 (1224)
Q Consensus 1105 gldt-~vge~G~~LSGGQrQRlaLARAll~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~ 1179 (1224)
|++. ..+....+||||||||++|||+|+++| +++||||||++||+.+.+.+.+.|+++. +|+|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 467788899999999999999999999 9999999999999999999999999875 5889999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhc
Q 047171 1180 KADNIVVI------KNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1180 ~aD~I~vl------~~G~Ive~Gt~~eLl~~ 1204 (1224)
.||+|++| ++|+|++.|+++++.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 99999999 69999999999999876
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.82 Aligned_cols=219 Identities=29% Similarity=0.421 Sum_probs=183.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCCC--C
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKSY--N 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~--~ 1048 (1224)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 36899999999963 359999999999999999999999999999999999864 4999999999988643 3
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCC--CC-CH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA-TE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~-~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
...+|++++||||+|.+|..|++|||.++.. .. +. +++.++++..++.+.+ .......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHH
Confidence 3467899999999999998999999987531 11 11 2333444444432211 122345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999866 99999999999999999999
Q ss_pred Hhhc
Q 047171 1201 LLSM 1204 (1224)
Q Consensus 1201 Ll~~ 1204 (1224)
+...
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9865
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=367.39 Aligned_cols=211 Identities=33% Similarity=0.515 Sum_probs=181.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 479999999963 369999999999999999999999999999999999999999999999999887654 368899
Q ss_pred EEecCCCCCcc-cHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|.+ |++||+.++.. ..+ ++++.++++..++.++. .....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA-----------NRKPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999986421 111 23444455554544443 34446899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998763 7999999999999866 999999999999999999999764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.80 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 6999999999963 4599999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEecCCCCCc-ccHHHHHccCC-CC------C---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGK-EV------A---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~-~~------~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+|+||++.+|. .|++||+.++. +. . .++.++++++..++.++ ......+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHHH
Confidence 99999998875 69999998752 11 0 12234555555554433 3345678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998866 9999999999999999999986
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=364.29 Aligned_cols=198 Identities=30% Similarity=0.497 Sum_probs=167.2
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 45999999999999999999999999999999999999999999999998764 47889999
Q ss_pred EecCCCC---CcccHHHHHccCCCCC----------CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1059 VSQEPTL---FAGTIRQNIVYGKEVA----------TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1059 V~Qdp~L---F~gTIreNl~~~~~~~----------~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+||+|.+ |+.|++||+.++.... .++++.++++..++.++. .....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHH
Confidence 9999986 5689999998753210 123345555555544332 334567999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 67899999999999876 9999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=381.99 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=182.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 5688999
Q ss_pred EEEecCCCCC-cccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTLF-AGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~LF-~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++.+| ..|++||+.+... ..+.++..+.++ .+.+. ..+++..++.+ .+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP--SLLEF-ARLESKADARV----SDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhc
Confidence 9999999986 5799999985322 122222222211 11121 12344445444 4799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++|||||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 48999999999999976 999999999999999999999764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=370.70 Aligned_cols=219 Identities=31% Similarity=0.455 Sum_probs=187.0
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 1048 (1224)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3599999999999999999999999999999999999864 58999999999864 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCCC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
...+|++++|+||++.+|+.|+.|||.++... ..++++.++++.+++.+.+. ......+..|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHH
Confidence 45678999999999999989999999875311 11334455566666544332 2234556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEE
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK---------NGKVV 1193 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~---------~G~Iv 1193 (1224)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998778999999999999865 99999997 89999
Q ss_pred EecChhHHhhc
Q 047171 1194 EQGTQSSLLSM 1204 (1224)
Q Consensus 1194 e~Gt~~eLl~~ 1204 (1224)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=369.65 Aligned_cols=218 Identities=27% Similarity=0.404 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-----CCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-----QSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1049 (1224)
.+.+++++++|. +.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 488999999995 34699999999999999999999999999999999999986 79999999999864 344
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
..+|+.++|+||++.+|..|++|||.++... ...+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 5678899999999999999999999876321 122456666766665444322 2345677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe--------CCEEEEe
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK--------NGKVVEQ 1195 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~--------~G~Ive~ 1195 (1224)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778899999999998865 99999996 8999999
Q ss_pred cChhHHhhc
Q 047171 1196 GTQSSLLSM 1204 (1224)
Q Consensus 1196 Gt~~eLl~~ 1204 (1224)
|+++++++.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999865
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=365.63 Aligned_cols=212 Identities=33% Similarity=0.520 Sum_probs=174.6
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH---HHHh
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL---RKLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~---~~lR 1053 (1224)
|+++||+++|+++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1269999999999999999999999999999999999999999999999999987764 5788
Q ss_pred cceEEEecCC--CCC-cccHHHHHccCCC----CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHHHHHH
Q 047171 1054 SCIALVSQEP--TLF-AGTIRQNIVYGKE----VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 ~~i~~V~Qdp--~LF-~gTIreNl~~~~~----~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQrQRl 1125 (1224)
++++|+||+| .++ ..|++||+.++.. ...+++...+. .+.+..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5799999975421 11112111111 1233332 342 345566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
+||||++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 7899999999999874 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=370.84 Aligned_cols=212 Identities=28% Similarity=0.451 Sum_probs=182.8
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEecCCC-CCcccHHHHHccCCCC-------C---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1058 LVSQEPT-LFAGTIRQNIVYGKEV-------A---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1058 ~V~Qdp~-LF~gTIreNl~~~~~~-------~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
|+||++. .+..|++||+.++... . .++++.++++..++.+ ........||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHH
Confidence 9999985 4568999999875310 0 1123444444444432 333455689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
||||++.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 47899999999999955 99999999999999999998864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=348.61 Aligned_cols=172 Identities=41% Similarity=0.715 Sum_probs=162.3
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++. +.++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|++|+|.+|+.|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=370.39 Aligned_cols=219 Identities=30% Similarity=0.485 Sum_probs=185.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-----CceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-----SGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~ 1048 (1224)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35899999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCC--C-CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--V-ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~-~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
...+|+.++|+||++.+|..|++||+.++.. . .++ +.+.++++..++.+++. ...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 5678899999999999999999999986421 1 122 23445555555544332 23455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC-----CEEE
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN-----GKVV 1193 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~-----G~Iv 1193 (1224)
|||++||||++++|++|||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999854 48999999999999876 999999999 9999
Q ss_pred EecChhHHhhc
Q 047171 1194 EQGTQSSLLSM 1204 (1224)
Q Consensus 1194 e~Gt~~eLl~~ 1204 (1224)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=359.98 Aligned_cols=201 Identities=31% Similarity=0.482 Sum_probs=172.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999877654 467899
Q ss_pred EEecCCCCCcc-cHHHHHccCCC-C-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKE-V-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~-~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|.+ |++||+.++.. . .+++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHH
Confidence 99999999975 99999987532 1 123456666666666554433 334799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
++++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999966 9999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=364.03 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=175.2
Q ss_pred cEEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---H
Q 047171 977 FIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---L 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---l 1052 (1224)
.|+++|++++|++... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974211 35999999999999999999999999999999999999999999999999998877653 3
Q ss_pred -hcceEEEecCCCCCc-ccHHHHHccCC--CCCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1053 -RSCIALVSQEPTLFA-GTIRQNIVYGK--EVAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1053 -R~~i~~V~Qdp~LF~-gTIreNl~~~~--~~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
+++++|+||+|.+|. .|++||+.++. ...+ .+++.++++..++.++. ......||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRL-----------DHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHH
Confidence 368999999999887 49999997632 1111 23344555555544433 33345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988742 7899999999999988999999999999874
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=362.72 Aligned_cols=204 Identities=27% Similarity=0.451 Sum_probs=172.3
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hhc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LRS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR~ 1054 (1224)
|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 246999999999999999999999999999999999999999999999999998776543 788
Q ss_pred ceEEEecCCCC-CcccHHHHHccCC--CCCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTL-FAGTIRQNIVYGK--EVATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~L-F~gTIreNl~~~~--~~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
.++|+||+|.+ +..|++||+.++. ...++++ +.++++..++.+ .......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHHHHHHHH
Confidence 99999999987 4679999998752 1223333 333344433333 2334456899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
|||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999875 47899999999999976 99999999999853
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=342.76 Aligned_cols=212 Identities=36% Similarity=0.577 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC---HHHHhcc
Q 047171 327 EIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQ 392 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 392 (1224)
.|+++||+..||+. ++++++||+|+||||||||++.|.|+.+|++|+|.++|.++..++ ...+|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 37888888888643 467899999999999999999999999999999999999998887 4556789
Q ss_pred cEEecCCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 393 MGLVNQEPILFST-SIKENILIGKPGASM--ET---VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 393 i~~v~Q~~~lf~~-ti~~ni~~g~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
|||++|++.|.+. ||.+|++.|+-+... .- +....+...+.+-++++ |+....-.+..+|||||+|||+|||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHHHH
Confidence 9999999999876 999999988643210 00 00011222233445555 5555667788999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||+++|+|++-|||+|+|||.+.+.+++.|++. ..|.|+|+.-|.++.+++ ||||+-|++|+|+..|+.+|+-+
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999999999999999999999875 468999999999999976 99999999999999999999643
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=368.98 Aligned_cols=224 Identities=27% Similarity=0.431 Sum_probs=184.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-----CceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-----SGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~~ 1049 (1224)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999864 345
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHccCCC--CC-CHHHHHHH----HHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1050 RKLRSCIALVSQEPTLFA-GTIRQNIVYGKE--VA-TEAEIRKA----AVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~-~deei~~a----l~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
..+|+.++|+||++.+|. .|++||+.++.. .. .+++..+. ++..++.+. ++..++ ....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~----~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLK----TPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhc----CCcccCCHHH
Confidence 578899999999999988 599999986431 11 23333322 222222221 122233 3456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999886 99999999999999999999
Q ss_pred HhhcCCCchhH
Q 047171 1201 LLSMGNGGAYY 1211 (1224)
Q Consensus 1201 Ll~~~~~g~y~ 1211 (1224)
++.. +...|.
T Consensus 234 ~~~~-~~~~~~ 243 (252)
T PRK14272 234 LFTN-PRDERT 243 (252)
T ss_pred HHhC-cCcHHH
Confidence 9875 334343
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=362.87 Aligned_cols=209 Identities=32% Similarity=0.476 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|+. . ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999876654 367899
Q ss_pred EEecCCCCCcc-cHHHHHccCC-CC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGK-EV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~-~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|.+ |++||+.++. +. ..++++.++++..++.+++.+. ...||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL-----------PGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 11 1234566667766665554433 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999866 999999999999999999999864
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=363.15 Aligned_cols=211 Identities=67% Similarity=1.005 Sum_probs=191.6
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccH
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 407 (1224)
..++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+|+.|+
T Consensus 17 ~~l~~i~~~i~---~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 93 (238)
T cd03249 17 PILKGLSLTIP---PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTI 93 (238)
T ss_pred cceeceEEEec---CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhH
Confidence 35677777764 567999999999999999999999999999999999999987777777888999999999998999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 408 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
+||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++|||||||++||+.
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~ 173 (238)
T cd03249 94 AENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 99999876554556666677777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 488 SERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 488 ~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 174 ~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 174 SEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999887778999999999999988999999999999999999888764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=360.59 Aligned_cols=205 Identities=25% Similarity=0.500 Sum_probs=171.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
|+||++.+|. .|++||+.++.. ..+..+.. ..+.+++..+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999987 499999976421 11111111 1122333333 344444556678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 47899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=355.96 Aligned_cols=208 Identities=35% Similarity=0.582 Sum_probs=178.4
Q ss_pred cEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC-CCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK-KLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~i~ 394 (1224)
-++++|++|+|+++ ++++.++|+|+||||||||+++|.|+++|++|.|.++|.++. ..+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 37788888888754 246699999999999999999999999999999999999998 478899999999
Q ss_pred EecCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEP--ILFSTSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|+| .+|..||.|.++||..+ .+.+++.+..+ +.++.+ |+.....+...+||||||||+|||.+|+.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~-----~~l~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA-----EALELV--GLEELLDRPPFNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH-----HHHHHc--CchhhccCCccccCCcceeeHHhhHHHHc
Confidence 999999 79999999999999753 33444333222 222222 44444667789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999998763 5899999999999987 999999999999999999998765
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=367.47 Aligned_cols=227 Identities=26% Similarity=0.429 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC------ccCCCCCHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE------RNIKSYNLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG------~di~~~~~~ 1050 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999963 4689999999999999999999999999999999999999997666554 677777778
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHccCCC--CC-CHHHH----HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1051 KLRSCIALVSQEPTLFAG-TIRQNIVYGKE--VA-TEAEI----RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~g-TIreNl~~~~~--~~-~deei----~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
.+|++++|+||+|.+|.+ |++||+.++.. .. ++++. .++++..++.+++ .......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 889999999999999875 99999986532 11 22333 3333333332221 1223456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|++|||||||++||..++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999954 999999999999999999999
Q ss_pred hhcCCCchhHHHH
Q 047171 1202 LSMGNGGAYYSLI 1214 (1224)
Q Consensus 1202 l~~~~~g~y~~l~ 1214 (1224)
... +...|.+.+
T Consensus 240 ~~~-~~~~~~~~~ 251 (257)
T PRK14246 240 FTS-PKNELTEKY 251 (257)
T ss_pred HhC-CCcHHHHHH
Confidence 875 344455443
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=368.69 Aligned_cols=218 Identities=28% Similarity=0.451 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC--C---CCceEEECCccCCC--CCH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--P---QSGSVMVDERNIKS--YNL 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--~~~ 1049 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999975 4 58999999998864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCC--CC-C----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VA-T----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~--~~-~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
..+|++++|+||++.+|..|+++|+.++.. .. . ++++.++++.+++.+. +.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 1233334444443322 22234456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999999
Q ss_pred hhc
Q 047171 1202 LSM 1204 (1224)
Q Consensus 1202 l~~ 1204 (1224)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 865
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=371.83 Aligned_cols=214 Identities=30% Similarity=0.538 Sum_probs=180.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC--CCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS--YNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~~~~lR~~ 1055 (1224)
|+++||+++|+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2459999999999999999999999999999999999999999999999999852 334568899
Q ss_pred eEEEecCC--CCCcccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1056 IALVSQEP--TLFAGTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1056 i~~V~Qdp--~LF~gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
|+|+||+| .+|..|++||+.++.. ..+.+ ++.++++..++.+ .......+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-----------FENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 99999998 5788999999986521 12222 2333444443322 2233456799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999875 999999999999999999998763
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=375.87 Aligned_cols=219 Identities=30% Similarity=0.498 Sum_probs=186.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-----CCCceEEECCccCCC--CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-----PQSGSVMVDERNIKS--YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 1048 (1224)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 469999999999999999999999999999999999986 689999999999865 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCCC-------------------CCHHHHHHHHHHHhHHHHHHhcccccccc
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-------------------ATEAEIRKAAVLANAHEFISSTEDGYDTY 1109 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~-------------------~~deei~~al~~a~l~~~I~~lp~gldt~ 1109 (1224)
...+|++++|+||++.+|++|++||+.++... ..++++.++++..++ +.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 56788999999999999999999999875211 012233444444433 2234455
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEE-EEE
Q 047171 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNI-VVI 1187 (1224)
Q Consensus 1110 vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I-~vl 1187 (1224)
....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 66778899999999999999999999999999999999999999999999998777899999999999866 9997 567
Q ss_pred eCCEEEEecChhHHhhc
Q 047171 1188 KNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1188 ~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=358.40 Aligned_cols=207 Identities=40% Similarity=0.605 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 394 (1224)
.|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 46666666666421 246699999999999999999999999999999999999998888888899999
Q ss_pred EecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 395 LVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 395 ~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++|++.+|+.|++||+.+..+ ...+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+.+|++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999987643 456778888888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecC
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~ 534 (1224)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=367.65 Aligned_cols=226 Identities=25% Similarity=0.431 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc-----CCCCCHHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN-----IKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~~~~~~ 1051 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 369999999999999999999999999999999999999999999999998 77766554
Q ss_pred ----HhcceEEEecCCC--CC-cccHHHHHccCC---CCCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChH
Q 047171 1052 ----LRSCIALVSQEPT--LF-AGTIRQNIVYGK---EVATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGG 1120 (1224)
Q Consensus 1052 ----lR~~i~~V~Qdp~--LF-~gTIreNl~~~~---~~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGG 1120 (1224)
+|+.++||||++. ++ ..|+.+|+.+.. ...+..++.+ .+.+++..++ ++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHH
Confidence 3668999999984 33 358888886421 1111222221 2345555553 33 3566778899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hhHHhhcCCCchhHHH
Q 047171 1198 QSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1198 ~~eLl~~~~~g~y~~l 1213 (1224)
++++... +...|.+.
T Consensus 236 ~~~~~~~-~~~~~~~~ 250 (258)
T PRK11701 236 TDQVLDD-PQHPYTQL 250 (258)
T ss_pred HHHHhcC-CCCHHHHH
Confidence 9999865 23345443
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=383.26 Aligned_cols=210 Identities=30% Similarity=0.439 Sum_probs=181.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHHHHh
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLRKLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~~lR 1053 (1224)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 99999999999999999999999999999999999999999999988653 244578
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++++||||++.+|. .|++||+.++.....++++.++++..++.++ ......+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPL-----------LDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 6999999987543344556666666555443 33445689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998753 7899999999998866 999999999999999999999876
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=368.24 Aligned_cols=212 Identities=26% Similarity=0.441 Sum_probs=183.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC--------CceEEECCccCCCCCH
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ--------SGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--------~G~I~idG~di~~~~~ 1049 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 46999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEecCCC-CCcccHHHHHccCCC-C------CCH---HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCC
Q 047171 1050 RKLRSCIALVSQEPT-LFAGTIRQNIVYGKE-V------ATE---AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLS 1118 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~-LF~gTIreNl~~~~~-~------~~d---eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LS 1118 (1224)
..+|+.++|+||++. +|..|++||+.++.. . .+. +.++++++.. |+++..+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCC
Confidence 888889999999986 678999999987521 1 111 1233333333 45555666778899
Q ss_pred hHHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEE
Q 047171 1119 GGQKQRIALARAVL---------KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVV 1186 (1224)
Q Consensus 1119 GGQrQRlaLARAll---------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~v 1186 (1224)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 7899999999999865 999999
Q ss_pred EeCCEEEEecChhHHhh
Q 047171 1187 IKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1187 l~~G~Ive~Gt~~eLl~ 1203 (1224)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=360.89 Aligned_cols=205 Identities=34% Similarity=0.562 Sum_probs=171.3
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC--CCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS--YNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~~~~lR~~ 1055 (1224)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 459999999999999999999999999999999999999999999999998853 455678899
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++|+||+|.+|. .|++||+.++.. ..+.++..+. +.+.+..+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 699999987521 2222222111 12233332 444444555678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
+++|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47899999999999966 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=361.81 Aligned_cols=210 Identities=30% Similarity=0.532 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999962 27999999999999999999999999999999999999999999999999877654 378999
Q ss_pred EEecCCCCCc-ccHHHHHccCCCC--CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKEV--AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~~--~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|. .|++||+.++... .+ ++++.++++..++.+++ .....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLL-----------NRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHH-----------hcCcccCCHHHHHHHHHHHH
Confidence 9999999885 7999999865321 12 22344455555544433 33446799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++++|++|+|||||++||+.+.+.+.+.|+++.. ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998753 8999999999999876 999999999999999999999865
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=377.91 Aligned_cols=228 Identities=19% Similarity=0.299 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC----CCCceEEECCccCCCCCHHH
Q 047171 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD----PQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~~~~~~ 1051 (1224)
.|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999996432 2469999999999999999999999999999999999986 58999999999998888766
Q ss_pred Hh----cceEEEecCCCC--C-cccHHHHHccCCC---C----C-----CHHHHHHHHHHHhHHHHHHhcccccccccCC
Q 047171 1052 LR----SCIALVSQEPTL--F-AGTIRQNIVYGKE---V----A-----TEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112 (1224)
Q Consensus 1052 lR----~~i~~V~Qdp~L--F-~gTIreNl~~~~~---~----~-----~deei~~al~~a~l~~~I~~lp~gldt~vge 1112 (1224)
++ ++|+||||+|.. + ..||.+|+..... . . .++++.++++.+++.+.- .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 479999999963 3 3589999863210 0 0 123344555555553210 11234
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeC
Q 047171 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKN 1189 (1224)
Q Consensus 1113 ~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~ 1189 (1224)
...+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998763 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhhcCCCchhHHH
Q 047171 1190 GKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1190 G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|+|+|.|+++++++. +...|.+.
T Consensus 235 G~ive~g~~~~i~~~-p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTT-PHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhC-CCCHHHHH
Confidence 999999999999876 45567653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=362.04 Aligned_cols=215 Identities=25% Similarity=0.437 Sum_probs=171.8
Q ss_pred cEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC---CCCceEEECCccCCCCCHHHH
Q 047171 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD---PQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~~~~l 1052 (1224)
.+.|+||+|+|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHh
Confidence 367999999997532 3579999999999999999999999999999999999999 99999999999875 3567
Q ss_pred hcceEEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHH-HHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1053 RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHE-FISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~-~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|++++|+||++.+|.+ |++||+.++..........+.......++ .+..+ +++........+||||||||++||||
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHH
Confidence 8999999999999986 99999986421110000000111111111 12111 33333345567899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCc-hhh-hhcCEEEEEeCCEEEEec
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRL-STI-QKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti-~~aD~I~vl~~G~Ive~G 1196 (1224)
++++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|+++++|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 478999999998 455 559999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=365.64 Aligned_cols=227 Identities=26% Similarity=0.386 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC----CCceEEECCccCCCCCHHHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP----QSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p----~~G~I~idG~di~~~~~~~l 1052 (1224)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3599999999999999999999999999999999999999 999999999988632 223
Q ss_pred hcceEEEecCCC-CCc--ccHHHHHccC----CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1053 RSCIALVSQEPT-LFA--GTIRQNIVYG----KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1053 R~~i~~V~Qdp~-LF~--gTIreNl~~~----~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++.++||||++. .|. .|+.+|+... .....+++++++++..++.+. ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 568999999985 343 5888887532 112233455666655554321 1234566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999998
Q ss_pred hcCCCchhHHHHHHh
Q 047171 1203 SMGNGGAYYSLIKMQ 1217 (1224)
Q Consensus 1203 ~~~~~g~y~~l~~~q 1217 (1224)
+......+..++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 752223455566544
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=375.73 Aligned_cols=203 Identities=32% Similarity=0.569 Sum_probs=170.3
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---HhcccEEecCCCCCCc-
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQMGLVNQEPILFS- 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r~~i~~v~Q~~~lf~- 404 (1224)
.++||||..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++..++... .|++||||+|++.+|+
T Consensus 20 ~L~~vsl~i~---~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 20 ALNNVSLHVP---AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 4555555543 56799999999999999999999999999999999999998887654 5789999999999996
Q ss_pred ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 405 TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 405 ~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
.|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+.+|||||||||+|||||+.+|++||||||||
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts 169 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 699999998642 122222221 122344444 55555677888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 483 ALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 170 ~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 9999999999999988753 8999999999999976 999999999999999999999864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=341.32 Aligned_cols=190 Identities=34% Similarity=0.503 Sum_probs=155.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC-CHHHHhcccEEecCCCC--CCc-ccHHHHHhcCCC-
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL-QLKWLRSQMGLVNQEPI--LFS-TSIKENILIGKP- 416 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~--lf~-~ti~~ni~~g~~- 416 (1224)
+|+++||||+||||||||+++|+|+.+|++|+|.++|.++... .....++.|-+|+|||. |-+ .||++-|.=+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 5779999999999999999999999999999999999877554 34467889999999995 322 277766642211
Q ss_pred ---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 047171 417 ---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493 (1224)
Q Consensus 417 ---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~ 493 (1224)
+...+++.++++..++. ......++.+|||||||||||||||..+|++||||||||+||+..+..|.
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~----------~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLP----------PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred CCccHHHHHHHHHHHHcCCC----------HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 11223344444444332 13456778899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC--CeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 494 EALDQASQG--RTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 494 ~~l~~~~~~--~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.++++. -|.|+|||+++.+.+ ||||+||++|+++|.++.+++...
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999887754 599999999999988 999999999999999999998865
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=331.15 Aligned_cols=217 Identities=28% Similarity=0.472 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
+++++++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||.|+.+ ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999974 3448999999999999999999999999999999999999999999999999977 6788999999
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+++-+.-|+. .|.||||.|+.. +-++.++. ++.+.+.+-.. |.+-+|..+| +||-|+|||++|||||+++
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k--ari~~l~k~l~-l~~~~~rRv~----~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIK--ARIAELSKRLQ-LLEYLDRRVG----EFSTGMKQKVAIARALVHD 151 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHhC-hHHHHHHHHh----hhchhhHHHHHHHHHHhcC
Confidence 9997776774 799999998642 22233322 12222222211 1122344454 5999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|+|++||||||+||..+.+.+++-+.+... |++||+-||.++.++. ||+|+++++|+++..|+++++.++
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999998774 9999999999999985 999999999999999999999764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=326.12 Aligned_cols=196 Identities=31% Similarity=0.546 Sum_probs=164.9
Q ss_pred EEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC---HHHHhccc
Q 047171 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQM 393 (1224)
Q Consensus 328 i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~i 393 (1224)
|+|+||++.|++. ++++++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+. ...+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 6777777777643 356799999999999999999999999999999999999998775 45689999
Q ss_pred EEecCCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 394 GLVNQEPILFST-SIKENILIGKP--GAS----METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
|+|+||.-|... ||.||++|... ... .+++.++++.+++.+- ...-+.+||||||||+||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k-----------~~~lP~~LSGGEQQRvaIAR 150 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK-----------ARALPSQLSGGEQQRVAIAR 150 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh-----------hhcCccccCchHHHHHHHHH
Confidence 999999987755 99999998643 122 2345555555554444 44445789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecC
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~ 534 (1224)
|++.+|++||-||||.+|||++...|++.++++ +.|.||+|.||+.+.+.. --|++.+++|+++....
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999886 469999999999999987 66899999999987543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=354.74 Aligned_cols=202 Identities=34% Similarity=0.514 Sum_probs=173.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEecCCCCCc-ccHHHHHccCC-CC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGK-EV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~-~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
||||+|.+|. .|++||+.++. +. .+++++.++++..++.+...+ ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR-----------LPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhC-----------CcccCCHHHHHHHHHHHH
Confidence 9999999987 59999997642 11 123455566666666554433 334799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=365.86 Aligned_cols=230 Identities=30% Similarity=0.467 Sum_probs=189.0
Q ss_pred cEEEEEEEEECCCC------CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-
Q 047171 977 FIELKNVFFSYPSR------PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL- 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~- 1049 (1224)
.|+++||+++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999631 13569999999999999999999999999999999999999999999999999987765
Q ss_pred --HHHhcceEEEecCCC--CC-cccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChH
Q 047171 1050 --RKLRSCIALVSQEPT--LF-AGTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGG 1120 (1224)
Q Consensus 1050 --~~lR~~i~~V~Qdp~--LF-~gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGG 1120 (1224)
..+|+.++|+||++. ++ ..|+++|+.+... ..+.+ .....+.+.+..+ |+++ .....+..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 347889999999983 43 4799999864311 11111 1122334455443 5653 456677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
||||++|||||+.+|+||||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999998753 7899999999999975 99999999999999999
Q ss_pred hhHHhhcCCCchhHHHHH
Q 047171 1198 QSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1198 ~~eLl~~~~~g~y~~l~~ 1215 (1224)
++++... ++.|..-+.
T Consensus 236 ~~~~~~~--~~~~~~~~~ 251 (268)
T PRK10419 236 VGDKLTF--SSPAGRVLQ 251 (268)
T ss_pred hhhccCC--CCHHHHHHH
Confidence 9999864 555554443
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=364.07 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=175.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHH-hc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKL-RS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~l-R~ 1054 (1224)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 4699999999999999999999999999999999999 47999999999999988877665 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHccCCCC---------CCHHHHHHHHHHHhHHHHHHhcccccccc-cCCCCC-CCChHHH
Q 047171 1055 CIALVSQEPTLFAG-TIRQNIVYGKEV---------ATEAEIRKAAVLANAHEFISSTEDGYDTY-CGERGV-QLSGGQK 1122 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~g-TIreNl~~~~~~---------~~deei~~al~~a~l~~~I~~lp~gldt~-vge~G~-~LSGGQr 1122 (1224)
.++|+||+|.+|.+ |++||+.+.... .+.++..+ .+.+.+..+ |++.. ...... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999998875 899999753210 11111111 112222222 23211 222333 5999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecChh
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999875 47899999999999976 7999999999999999998
Q ss_pred HHhh
Q 047171 1200 SLLS 1203 (1224)
Q Consensus 1200 eLl~ 1203 (1224)
++-.
T Consensus 231 ~~~~ 234 (243)
T TIGR01978 231 LAKE 234 (243)
T ss_pred Hhcc
Confidence 6543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=375.15 Aligned_cols=200 Identities=24% Similarity=0.409 Sum_probs=171.3
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIR 1071 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TIr 1071 (1224)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 446678999999999999875 999
Q ss_pred HHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC
Q 047171 1072 QNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1072 eNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS 1145 (1224)
||+.+... ..+. +++.++++..++ +........+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFEL-----------GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986421 1122 223334444333 222334456799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1146 ALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1146 aLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999976 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=354.40 Aligned_cols=192 Identities=43% Similarity=0.698 Sum_probs=176.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.++|++|++.+|+.|+.||+.++.+....+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~ 108 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDE 108 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHH
Confidence 56799999999999999999999999999999999999998777777788999999999999889999999875544556
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQ 501 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~ 501 (1224)
++.+.++..++.+.+.+.|.|++|.+.+...+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++.+
T Consensus 109 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 188 (220)
T cd03245 109 RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188 (220)
T ss_pred HHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 77778888888899999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCeEEEEeCCcchhhccCEEEEEeCceEEeec
Q 047171 502 GRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533 (1224)
Q Consensus 502 ~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g 533 (1224)
++|+|++||+++.++.||+|++|++|++++.|
T Consensus 189 ~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 189 DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 68999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=335.40 Aligned_cols=220 Identities=29% Similarity=0.467 Sum_probs=189.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
-++++|++..|.. ..+|++|||++++||+++++||||+||||++++|+|+.+|.+|+|.++|.|++..+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999999999888 5889
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
|+||||...+|. .||.|||.+|.....+++-++ ...++..+-+| -+.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999996 699999998732212111111 11223333455 366667788899999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|++|+|||||.+|-|.--+.|.++|+++.+ +.||++|-++...... +||.+||++|+|+..|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 5599999999998755 999999999999999999999875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=375.97 Aligned_cols=205 Identities=31% Similarity=0.500 Sum_probs=176.8
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH----hcccEEecCCCCC
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQEPIL 402 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l 402 (1224)
...++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ |++|+||+|++++
T Consensus 6 ~~~l~~vs~~i~---~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIA---KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEc---CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 356899999975 578999999999999999999999999999999999999999988877 7899999999999
Q ss_pred Ccc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 403 FST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 403 f~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
|+. ||+|||.|+.+. .+.++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+||||||
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 975 999999987431 12222211 223344444 56666788889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 480 ATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+||+.+.+.+++.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|+++++++.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998764 38999999999998755 999999999999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=364.89 Aligned_cols=222 Identities=25% Similarity=0.416 Sum_probs=183.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC---CceEEECCccCCCC-----C
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSY-----N 1048 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~~-----~ 1048 (1224)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999988653 3
Q ss_pred HHHHhcceEEEecCCCCCc-ccHHHHHccCCCCC--------------CHHHHHHHHHHHhHHHHHHhcccccccccCCC
Q 047171 1049 LRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVA--------------TEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~--------------~deei~~al~~a~l~~~I~~lp~gldt~vge~ 1113 (1224)
...+|++++|+||++.+|. .|++||+.++.... .++++.++++..++. ......
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-----------HFAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-----------HHHhCC
Confidence 4567889999999999887 59999998653110 112233344443333 233445
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 047171 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G 1190 (1224)
..+||||||||++||||++.+|++|||||||++||.++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 66899999999999999999999999999999999999999999999876 37899999999998755 9999999999
Q ss_pred EEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1191 KVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1191 ~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
++++.|+++++ . .....+++..
T Consensus 230 ~i~~~g~~~~~-~---~~~~~~~~~~ 251 (262)
T PRK09984 230 HVFYDGSSQQF-D---NERFDHLYRS 251 (262)
T ss_pred EEEEeCCHHHh-c---cHHHHHHHhh
Confidence 99999999997 3 2345555543
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=370.52 Aligned_cols=208 Identities=27% Similarity=0.447 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCC---------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC-------
Q 047171 327 EIEFKDVDFSYPTR---------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL------- 384 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~---------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------- 384 (1224)
-|+++||+|+|++. ++++++||+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 48999999999631 24569999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcccEEecCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCC
Q 047171 385 ---------QLKWLRSQMGLVNQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQF 450 (1224)
Q Consensus 385 ---------~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~ 450 (1224)
+...+|++||||+|+| .+|+.||+|||.++.. ..+.++..+ .+.++++.+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCC
Confidence 3456889999999998 6899999999998742 223333221 234566666 664 467888
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhh-ccCEEEEEeCce
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIR-KADLIGVLQSGR 528 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~-~ad~i~vl~~G~ 528 (1224)
+.+||||||||++|||||+.+|+|||||||||+||+.+++.+.+.|.++ .+|+|+|+|||+++.+. .||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999876 35899999999999885 599999999999
Q ss_pred EEeecChHHHHhh
Q 047171 529 VIESGSHDVLMQM 541 (1224)
Q Consensus 529 i~~~g~~~~l~~~ 541 (1224)
+++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999998754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=350.52 Aligned_cols=206 Identities=31% Similarity=0.462 Sum_probs=162.3
Q ss_pred EeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEecCCCCCCc-ccHH
Q 047171 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFS-TSIK 408 (1224)
Q Consensus 331 ~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~-~ti~ 408 (1224)
+|+++..+ .++.+|+.||||||||||+++|+|+..|++|.|.+||..+.+.+. ..-.++||+|+|+..||. .||+
T Consensus 19 ~di~l~i~---~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa 95 (345)
T COG1118 19 DDISLDIK---SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVA 95 (345)
T ss_pred ccceeeec---CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHH
Confidence 35665543 577999999999999999999999999999999999994433332 333468999999999985 5999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
+||+||.+-. ...-.++.....+++.+..+ .++-.-...+.+|||||||||||||||..+|++|+||||+++||++.
T Consensus 96 ~NIAFGl~~~-~~~p~~~~~r~rv~elL~lv--qL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v 172 (345)
T COG1118 96 DNIAFGLKVR-KERPSEAEIRARVEELLRLV--QLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172 (345)
T ss_pred hhhhhccccc-ccCCChhhHHHHHHHHHHHh--cccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence 9999997311 00000111122222333322 23334456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 489 ERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 489 ~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
.+.+++.|++.. -|.|+++|||+.+++.. ||||+||++|+|...|+++|....+
T Consensus 173 r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 173 RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCC
Confidence 999999888754 38899999999999865 9999999999999999999998764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=367.58 Aligned_cols=214 Identities=30% Similarity=0.536 Sum_probs=186.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 34699999999999999999999999999999999999999999999999988764 77899999
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC---C---CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE---V---ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~---~---~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
|||||+|.++. -|++|||.+... . ..++.+.+.++..++.+. -......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-----------ANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh-----------hCcchhhcCHHHHHHHHHHH
Confidence 99999999776 599999987532 1 124566777776665441 12334579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV-G-RTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||+.+|++|||||||++||+.+...+++.|+++.+ + +||++.||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 699999999999988 999999999999999999998654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=345.83 Aligned_cols=200 Identities=30% Similarity=0.513 Sum_probs=169.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++|++|+|.++ +++++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+++.... +..||||
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEc
Confidence 47888888888743 3566999999999999999999999999999999999988765432 4579999
Q ss_pred cCCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHH
Q 047171 397 NQEP---ILFSTSIKENILIGKPGA----------SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 397 ~Q~~---~lf~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qria 463 (1224)
||.. |-|+-||+|=+.+|+... +.+++.++++.+++.++ ......+|||||+||+.
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-----------~~r~i~~LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-----------RDRQIGELSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-----------hCCcccccCcHHHHHHH
Confidence 9965 668999999999985321 23667777777776655 34556789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||+++|++|+|||||+++|+.++..+.+.|++++ +|+|+++|||+++.+.. +|+|+.| |++++..|+.++....
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~ 228 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence 9999999999999999999999999999999999876 49999999999999976 9999888 5578899999998763
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=361.62 Aligned_cols=202 Identities=27% Similarity=0.454 Sum_probs=170.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999988642 34699
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
|+||++.+|. .|++||+.++.. ..+. +++.++++..+ ++........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVG-----------LEGAEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999986521 1122 22333333333 3333345567899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEecCh
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIK--NGKVVEQGTQ 1198 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~--~G~Ive~Gt~ 1198 (1224)
|+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 38999999999999866 99999998 5999998764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=348.58 Aligned_cols=191 Identities=23% Similarity=0.352 Sum_probs=164.2
Q ss_pred cEEEEEEEEECCCC-CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC---CCCceEEECCccCCCCCHHHH
Q 047171 977 FIELKNVFFSYPSR-PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD---PQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~~~~l 1052 (1224)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 35679999999999999999999999999999999999999 89999999999988764 457
Q ss_pred hcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1053 RSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
|++++|+||++.+|. .|++|||.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 889999999998886 5999999865210 0 1234457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEc-cCchhhh-hcCEEEEEeCCEEEEec
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVA-HRLSTIQ-KADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~Ia-Hrl~ti~-~aD~I~vl~~G~Ive~G 1196 (1224)
+++|++|||||||++||+++++.+.+.|+++.+ ++|+|+++ |+++.+. .||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 46766665 5556664 59999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=376.58 Aligned_cols=207 Identities=29% Similarity=0.474 Sum_probs=176.4
Q ss_pred EEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHHhcceE
Q 047171 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKLRSCIA 1057 (1224)
Q Consensus 982 ~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~lR~~i~ 1057 (1224)
|++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 2 35 999999999999999999999999999999999999999999999986532 345788999
Q ss_pred EEecCCCCCc-ccHHHHHccCCCCCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKEVATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
||||++.+|. .|++||+.++....... .+.+.++.. |++........+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999997 59999999864322221 233333333 4444455666789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998753 7899999999999866 999999999999999999999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=356.07 Aligned_cols=203 Identities=33% Similarity=0.515 Sum_probs=169.9
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH---HHHhcccEEecCCCCCCcc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL---KWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~~i~~v~Q~~~lf~~ 405 (1224)
.++|+||... ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|+||+|++.+|+.
T Consensus 15 ~l~~vs~~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 15 VLKGVDLDVR---RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 4666776653 577999999999999999999999999999999999999987664 5678899999999999886
Q ss_pred -cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 406 -SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 406 -ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
|++||+.++.. ..+.++..+ .+.+.++.+ |+.........+||||||||++|||||+.+|++|||||||
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999988632 122222221 123344444 5555566777899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 482 SALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999998864 38999999999999876 999999999999999999988654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=353.94 Aligned_cols=435 Identities=17% Similarity=0.134 Sum_probs=326.4
Q ss_pred HHHHHHHHHHHHHH----HHHHHHcCChhhhhccCCCCCHHH------HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 047171 70 TRTAERQASRIRME----YLKSVLRQEVGFFDNQTSSSSTFQ------VVTNITSDAHSIQDAVAEKIPNCLAHLTSFIG 139 (1224)
Q Consensus 70 ~~~~~~~~~~lR~~----~~~~l~~~~~~~f~~~~~~~~~G~------l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~ 139 (1224)
.++.+++..+.|.- +.++-+.....|+.. ..|. .=.|+..|+..+-+...+....++.++++++.
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-----~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islis 181 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-----QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLIS 181 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-----hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455555555554 445545545333332 2222 23699999999998877777777887777766
Q ss_pred HHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 047171 140 SILVAFLLS---------------WRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSF 204 (1224)
Q Consensus 140 ~~~~~~~~~---------------~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~ 204 (1224)
..+++..++ ..+..++++.+++.-++..+++|.+.+..-+.++..++.-..+.-.-++...|-.|
T Consensus 182 F~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly 261 (604)
T COG4178 182 FTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALY 261 (604)
T ss_pred HHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 555554222 22334445555566666678889988888888888888888888899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Q 047171 205 VGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMS 283 (1224)
Q Consensus 205 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 283 (1224)
+.|+.|.++.++......+...+.......+..+. ....++.++-+..++-....|.++.|.+......+......++.
T Consensus 262 ~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslsw 341 (604)
T COG4178 262 RGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSW 341 (604)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777776665555444433333333 33334444444555666778999999999888777777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC------CCCCCcccc-cccccccccEEEEeEEEECCCC-----------CCCCE
Q 047171 284 ALPNLSFISQATTAATRIFEMIDRVP------VINSEDEIG-KTLAYLRGEIEFKDVDFSYPTR-----------PDTPT 345 (1224)
Q Consensus 284 ~~~~~~~~~~~~~s~~ri~~~l~~~~------~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~ 345 (1224)
+...+..+..-++...|+.++-+.-. +........ ......+..|+++|++..-|+. ++|+.
T Consensus 342 fi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~ 421 (604)
T COG4178 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGER 421 (604)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCE
Confidence 99999999999999999999864221 111110000 0001114679999999988753 35779
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCC--CCHHHH
Q 047171 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG--ASMETV 423 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~~~~~ 423 (1224)
+.|.||||||||||++.|+|++|--+|+|.+-.. ..+-|+||.|++-.||+||-|+|.+.. .+++++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 9999999999999999999999999999977521 258999999999999999999998754 789999
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR 503 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~ 503 (1224)
.+++.++++.++++++.+-. .=...||+|||||||+||.++++|++++|||+|||||+++|..+.+.+++...+.
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~ 565 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA 565 (604)
T ss_pred HHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCC
Confidence 99999999999999985321 1235799999999999999999999999999999999999999999999988999
Q ss_pred eEEEEeCCcchhhccCEEEEEe
Q 047171 504 TMIIIAHRLSTIRKADLIGVLQ 525 (1224)
Q Consensus 504 t~i~i~H~l~~~~~ad~i~vl~ 525 (1224)
|+|-|.||.......++.+-++
T Consensus 566 tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 566 TVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEEEeccchhhHHHHhhheeec
Confidence 9999999998887766655554
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=354.08 Aligned_cols=208 Identities=34% Similarity=0.471 Sum_probs=173.1
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH---HHh
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR---KLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1053 (1224)
++++|+++.|++.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 24699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+.++|+||+|.+|. .|+.||+.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 89999999999987 799999987532 122222221 112233332 3444444555689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
|++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998763 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=339.07 Aligned_cols=170 Identities=35% Similarity=0.633 Sum_probs=157.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999987765 67789999
Q ss_pred EEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
|+||++.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998886 9999984 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
+|||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+.. ||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 46899999999999875 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=340.42 Aligned_cols=172 Identities=45% Similarity=0.693 Sum_probs=159.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC--HHHHhcc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN--LRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--~~~lR~~ 1055 (1224)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999963 46999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
++|+||+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999886 5999999754 999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCE
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~ 1191 (1224)
|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998764 6899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=352.59 Aligned_cols=206 Identities=56% Similarity=0.870 Sum_probs=184.3
Q ss_pred ccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh
Q 047171 324 LRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR 390 (1224)
Q Consensus 324 ~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 390 (1224)
..+.++++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34678999999999642 24669999999999999999999999999999999999998877777788
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
+.++|++|++.+|+.|++||+.++.......++.+.+....++++++.+|.|+++.+++++.+||||||||++|||||+.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998765444455555556667889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceE
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
+|++|||||||++||+++...+.+.+.++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988778999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=358.20 Aligned_cols=226 Identities=25% Similarity=0.430 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc-----CCCCCHHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN-----IKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~~~~~~ 1051 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 76666543
Q ss_pred ----HhcceEEEecCCC--C-CcccHHHHHccCC---CCCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChH
Q 047171 1052 ----LRSCIALVSQEPT--L-FAGTIRQNIVYGK---EVATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGG 1120 (1224)
Q Consensus 1052 ----lR~~i~~V~Qdp~--L-F~gTIreNl~~~~---~~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGG 1120 (1224)
+++.++|++|+|. + +..|+.+|+.+.. ......+. ...+.+++..+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999985 2 3458888885321 00011111 12344555555 343 4566677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 37899999999999975 99999999999999999
Q ss_pred hhHHhhcCCCchhHHH
Q 047171 1198 QSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1198 ~~eLl~~~~~g~y~~l 1213 (1224)
++++... +...|.++
T Consensus 233 ~~~~~~~-~~~~~~~~ 247 (253)
T TIGR02323 233 TDQVLDD-PQHPYTQL 247 (253)
T ss_pred HHHHhcC-CCCHHHHH
Confidence 9999865 23445443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=411.28 Aligned_cols=212 Identities=24% Similarity=0.345 Sum_probs=153.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHH---------HHhcccCCCCc----e----EEE
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIG---------LIERFYDPQSG----S----VMV 1039 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~---------lL~rl~~p~~G----~----I~i 1039 (1224)
.++++|++. ..|+|+||+|++||.++|+|+||||||||++ .|.|...+..+ . |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478888752 2699999999999999999999999999999 55554322111 1 345
Q ss_pred CCccCCCCCH----------HHHh---------cc-----eEEEecC------------------C--------------
Q 047171 1040 DERNIKSYNL----------RKLR---------SC-----IALVSQE------------------P-------------- 1063 (1224)
Q Consensus 1040 dG~di~~~~~----------~~lR---------~~-----i~~V~Qd------------------p-------------- 1063 (1224)
|-.++..-+. +.+| ++ ..+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5444332111 1333 11 1122221 1
Q ss_pred ------CCCc-ccHHHHHccCCCCC-----CHHHHHHHHHHHhHHHHHHhcccccccc-cCCCCCCCChHHHHHHHHHHH
Q 047171 1064 ------TLFA-GTIRQNIVYGKEVA-----TEAEIRKAAVLANAHEFISSTEDGYDTY-CGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1064 ------~LF~-gTIreNl~~~~~~~-----~deei~~al~~a~l~~~I~~lp~gldt~-vge~G~~LSGGQrQRlaLARA 1130 (1224)
..+. .||.|||.++...+ +.+++.+.++ .+..+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1232 48899998763211 1233333321 12222 66654 678888999999999999999
Q ss_pred Hc---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEe------CCEEEEecChhH
Q 047171 1131 VL---KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIK------NGKVVEQGTQSS 1200 (1224)
Q Consensus 1131 ll---~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~------~G~Ive~Gt~~e 1200 (1224)
|+ ++|++|||||||++||+.+.+.+.+.|+++. +|.|+|+|+|+++.++.||+|++|. +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 5999999999999999999999999998875 5889999999999998899999996 799999999999
Q ss_pred Hhhc
Q 047171 1201 LLSM 1204 (1224)
Q Consensus 1201 Ll~~ 1204 (1224)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=372.30 Aligned_cols=191 Identities=27% Similarity=0.402 Sum_probs=162.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCC--C
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPG--A 418 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~--~ 418 (1224)
++++++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. +++||||+|++.+|+. ||+|||.|+... .
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~ 106 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHHHHHHhHHhhcCC
Confidence 5679999999999999999999999999999999999999887754 4689999999999964 999999997531 2
Q ss_pred CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 047171 419 SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ 498 (1224)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 498 (1224)
+.++..+ .+.+.++.+ |++......+.+|||||||||+|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 107 ~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 107 PKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred CHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2222211 123344444 555566777789999999999999999999999999999999999999999999987
Q ss_pred HcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 499 ASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 499 ~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 180 l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 180 LHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 643 8999999999998865 999999999999999999999875
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=370.31 Aligned_cols=206 Identities=30% Similarity=0.475 Sum_probs=171.0
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++||||
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v 83 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMV 83 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEE
Confidence 36666666666432 25679999999999999999999999999999999999999876643 5789999
Q ss_pred cCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+|++.+|+. ||+|||.|+.. ..+.++..+ .+++.++.+ |+.......+.+|||||||||||||||+.+|+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999975 99999999743 122222221 122334443 45555667788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|+++++.+.
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999988743 8999999999999865 999999999999999999999875
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=337.13 Aligned_cols=171 Identities=55% Similarity=0.910 Sum_probs=161.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++. ..++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999643 236899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|++|++.+|+.|+.||+ ||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGK 1191 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~ 1191 (1224)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=371.98 Aligned_cols=205 Identities=29% Similarity=0.455 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.||||+
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~ 82 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVF 82 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEe
Confidence 4555555555432 25679999999999999999999999999999999999999877654 57899999
Q ss_pred CCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFS-TSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+ .||+|||.|+... .+.++. ...+++.++.+ |++......+.+||||||||+||||||+.+|++
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~-----~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l 155 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEV-----AERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATSPGL 155 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999996 5999999997431 122222 12344556666 677777888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 156 LLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999988643 8999999999999865 999999999999999999999875
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=351.96 Aligned_cols=205 Identities=27% Similarity=0.408 Sum_probs=175.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999998875322 35799
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
|+||++.+|. .|++||+.++.. ..+++++.++++..++.+.. .....+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 699999976421 22455666666665554432 233457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 47899999999999865 99999999999999998865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=343.11 Aligned_cols=228 Identities=32% Similarity=0.516 Sum_probs=194.0
Q ss_pred cEEEEEEEEECCCCCCc---------------------cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 977 FIELKNVFFSYPSRPDQ---------------------MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~---------------------~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
.|+++||+.-|..++.. .-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888777533211 237899999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHh----cceEEEecCCCCCc-ccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhccc
Q 047171 1036 SVMVDERNIKSYNLRKLR----SCIALVSQEPTLFA-GTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTED 1104 (1224)
Q Consensus 1036 ~I~idG~di~~~~~~~lR----~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~ 1104 (1224)
+|++||.|+..++.++|| +++++|+|..-||. -||.||..||.. ..+ ++...++++.+++++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988764 67999999999886 799999999853 222 344567788888888766655
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhc
Q 047171 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTI-QKA 1181 (1224)
Q Consensus 1105 gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~a 1181 (1224)
.+||||+|||+.|||||..+|+|||+|||.|||||--...+|+-|.++-+ +||+++|||+|++. +--
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 46999999999999999999999999999999999999999998876642 78999999999986 559
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1182 DNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1182 D~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
|||..|++|+|+..|||+|.+.++.+.+-+++++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 9999999999999999999998854554445543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=348.54 Aligned_cols=204 Identities=30% Similarity=0.457 Sum_probs=169.2
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHHHHhc
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLRKLRS 1054 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~~lR~ 1054 (1224)
++ ||+++|++ ..+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999964 234 99999999 99999999999999999999999999999999999988643 2345788
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+++|+||++.+|. .|++||+.++......++. ...+.+++..+ |++........+||||||||++||||+++
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999986 6999999875322221111 11223344333 45555556778899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+++++|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998753 7899999999999865 9999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=354.58 Aligned_cols=207 Identities=30% Similarity=0.533 Sum_probs=172.5
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH-hcccEEecCCCCCCcc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~~v~Q~~~lf~~-t 406 (1224)
.++|++|... +++++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +..++||+|++.+|+. |
T Consensus 15 ~l~~vsl~i~---~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 15 ALDDVSFSVR---PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EecCceEEec---CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 4566666653 567999999999999999999999999999999999999988776554 5679999999999886 9
Q ss_pred HHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 407 IKENILIGKPGASMETV-------VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
++||+.++........+ ........+++.++.+ |++...+....+||||||||++|||||+.+|++|||||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 169 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999886431110000 0111122345667766 77777788899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 480 ATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||++||+.+.+.+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 170 PAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999998865 68999999999999976 99999999999999999998864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=342.40 Aligned_cols=183 Identities=31% Similarity=0.527 Sum_probs=162.5
Q ss_pred cEEEEEEEEECCCCC---CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc--CCCCceEEECCccCCCCCHHH
Q 047171 977 FIELKNVFFSYPSRP---DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY--DPQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~~~~ 1051 (1224)
.|+++||+|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 489999999997420 246999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1052 LRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
+|++++|+||++.+|. .|++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------------~~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK---------------LR-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH---------------hc-------------------cCCHHHHHHHHHHHH
Confidence 7889999999999886 599999965310 00 799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch-hhh-hcCEEEEEeCCEEEEec
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLS-TIQ-KADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~-ti~-~aD~I~vl~~G~Ive~G 1196 (1224)
++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 4889999999997 554 49999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=346.39 Aligned_cols=170 Identities=23% Similarity=0.420 Sum_probs=132.2
Q ss_pred eeceeEEE-----eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCC-CCccc
Q 047171 996 FKGLTLKI-----EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT-LFAGT 1069 (1224)
Q Consensus 996 L~~isl~I-----~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~-LF~gT 1069 (1224)
+.+..|++ ..||.++++||||-||||++++|.|..+|++|+ ..++ +++|=||--. -|+||
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gt 417 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGT 417 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCc
Confidence 34555554 557889999999999999999999999999998 3333 4899999742 48999
Q ss_pred HHHHHccCCCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 047171 1070 IRQNIVYGKEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148 (1224)
Q Consensus 1070 IreNl~~~~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD 1148 (1224)
|++-+.-..+. ..+.-.+. |.+ -|-.++..+...-.+|||||.||+|||-||.|++++.|||||++.||
T Consensus 418 V~~~l~~~~~~~~~~s~~~~--------ei~--~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD 487 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKT--------EIV--KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487 (591)
T ss_pred HHHHHHHhhhhhcccchhHH--------hhc--CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence 99977543222 11111111 111 13344444445556799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC
Q 047171 1149 SASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN 1189 (1224)
Q Consensus 1149 ~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~ 1189 (1224)
.+..-.+-++|++.. .++|.++|-|++..+.. +||++|++.
T Consensus 488 vEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 488 VEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999998876 47899999999999987 999999973
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=353.01 Aligned_cols=200 Identities=36% Similarity=0.560 Sum_probs=163.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEECCEecCCCC--HHHHhcccEEecCCCC
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFY-----DPVKGNILLDGHKIKKLQ--LKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~~~~~~--~~~~r~~i~~v~Q~~~ 401 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...+|++++|++|++.
T Consensus 15 ~l~~vsl~i~---~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 15 ALKDISLDIP---KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4666666653 57799999999999999999999999 999999999999998776 5667889999999999
Q ss_pred CCcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhccccccccccCC--CCCCChHHHHHHHHHHHhccCCCEEE
Q 047171 402 LFSTSIKENILIGKPGA---SMETVVKAAQAANVHDFIMKLNDGYETKVGQF--GVQLSGGQKQRIAIARALIRDPKILL 476 (1224)
Q Consensus 402 lf~~ti~~ni~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGq~qriaiARal~~~~~ili 476 (1224)
+|+.|++||+.++.... ..++.. ..+.+.++.+ |++...... +.+||||||||++|||||+.+|++||
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKA--ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHH-----HHHHHHHHHc--CCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89779999998763211 111111 1122334443 444334444 58999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 477 LDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 477 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||||++||+++...+.+.|+++.+.+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999987655899999999999875 999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=312.50 Aligned_cols=191 Identities=28% Similarity=0.499 Sum_probs=167.9
Q ss_pred CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 047171 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 992 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
+.++|+|+||++++||.++|.||||||||||++.++-+..|++|++++.|.|++.++++.+|++|+||-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCC----CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCC
Q 047171 1072 QNIVYGK----EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1072 eNl~~~~----~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaL 1147 (1224)
||+.|.- ...+...-.+.++.+++. ++.+..+..+||||||||+||+|-|---|+||+|||+||+|
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998752 122222223333333332 34555667789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEccCchh-hhhcCEEEEEeCCEE
Q 047171 1148 DSASENLVQEALEKMM--VGRTCVVVAHRLST-IQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1148 D~~te~~I~~~l~~~~--~~~TvI~IaHrl~t-i~~aD~I~vl~~G~I 1192 (1224)
|+.+.+.|.+.|.++. ++..++.|||+.+. ++.+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999887 46799999999988 888999999999976
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=348.69 Aligned_cols=227 Identities=26% Similarity=0.439 Sum_probs=182.9
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-C----CCceEEECCccCCCCCHHH
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-P----QSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p----~~G~I~idG~di~~~~~~~ 1051 (1224)
++++|++..|+... ...+++||||+|++||++||||.|||||||+.++++|+.+ | .+|+|.++|.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997542 2468999999999999999999999999999999999998 4 5799999999999999876
Q ss_pred Hh----cceEEEecCCC-CCc--ccHHHHH----ccCCCCCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1052 LR----SCIALVSQEPT-LFA--GTIRQNI----VYGKEVAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1052 lR----~~i~~V~Qdp~-LF~--gTIreNl----~~~~~~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
+| +.|++|||||. =|+ -||.+-+ .......+ .++..+.++.+++.+- +..+..-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 43 48999999995 222 2444433 32111101 2234555555554321 1133455678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
||||||||+.||-|++.+|++||.||||+|||..+++.|.+.|+++.+ |.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 8899999999999876 9999999999999
Q ss_pred EecChhHHhhcCCCchhHHH
Q 047171 1194 EQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1194 e~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|.|+.++++++ +...|.+.
T Consensus 234 E~g~~~~i~~~-P~HPYT~~ 252 (316)
T COG0444 234 EEGPVEEIFKN-PKHPYTRG 252 (316)
T ss_pred EeCCHHHHhcC-CCChHHHH
Confidence 99999999988 45556544
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=351.89 Aligned_cols=208 Identities=24% Similarity=0.415 Sum_probs=179.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999963 4599999999999999999999999999999999999999999999987 2469
Q ss_pred EEEecCCCCCc---ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTLFA---GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~LF~---gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++.++. .|+++|+.+. +..+++++.++++..++.+++.. ....||||||||++||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhc
Confidence 99999998765 4899998654 33456777888877777655432 345799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAY 1210 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y 1210 (1224)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.. +..|
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~---~~~~ 213 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL---HPEF 213 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC---CHHH
Confidence 9999999999999999999999999988753 7899999999999865 999999964 7999999999875 3556
Q ss_pred HHHH
Q 047171 1211 YSLI 1214 (1224)
Q Consensus 1211 ~~l~ 1214 (1224)
.+++
T Consensus 214 ~~~~ 217 (251)
T PRK09544 214 ISMF 217 (251)
T ss_pred HHHh
Confidence 6665
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=341.53 Aligned_cols=182 Identities=25% Similarity=0.447 Sum_probs=161.4
Q ss_pred cEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc--CCCCceEEECCccCCCCCHHHHh
Q 047171 977 FIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY--DPQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~~~~lR 1053 (1224)
.|+++|++++|+++. +.++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 246999999999999999999999999999999999986 489999999999875 5678
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++++|++|++.+|. .|++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 89999999998887 499999985410 00 79999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh-h-hhcCEEEEEeC-CEEEEec
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLST-I-QKADNIVVIKN-GKVVEQG 1196 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t-i-~~aD~I~vl~~-G~Ive~G 1196 (1224)
++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999875 47899999999984 4 56999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=354.05 Aligned_cols=203 Identities=33% Similarity=0.523 Sum_probs=167.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD---PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
.++|++|... ++++++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|++|+|++|++.+|+.
T Consensus 17 ~l~~isl~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 17 ALFDINMQIE---QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 3455555542 567999999999999999999999984 6999999999999888877888899999999999999
Q ss_pred cHHHHHhcCCCC--C--C----HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 406 SIKENILIGKPG--A--S----METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 406 ti~~ni~~g~~~--~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
|++||+.++... . . .+++.+.++..++.+++ .+...+.+.+||||||||++|||||+.+|+++||
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999876311 0 0 11222222222222211 2345677899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 167 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 167 DEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999887778999999999999865 999999999999999999998754
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=338.76 Aligned_cols=172 Identities=22% Similarity=0.478 Sum_probs=157.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-HHHhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~-~~lR~~ 1055 (1224)
.|+++|++++| +|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999998 7999999999999999999999999999999999999999999999999988774 457889
Q ss_pred eEEEecCC----CCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1056 IALVSQEP----TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1056 i~~V~Qdp----~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++|+||++ .++..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3445799999986521 999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
+++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999875 47899999999999977 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=330.86 Aligned_cols=164 Identities=34% Similarity=0.558 Sum_probs=151.1
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999632 46999999999999999999999999999999999999999999999983 6799
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
|+||++.++++|++||+.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999763 2357999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGK 1191 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~ 1191 (1224)
|||||||++||+++.+.+.+.|++. ++|+|++||+++....||+|++|++|.
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999886 689999999999888899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=355.42 Aligned_cols=220 Identities=21% Similarity=0.333 Sum_probs=170.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc--CCCCceEEECCccCCCCCHHHHh-c
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY--DPQSGSVMVDERNIKSYNLRKLR-S 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~~~~lR-~ 1054 (1224)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++...+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999963 35999999999999999999999999999999999994 69999999999999888876654 5
Q ss_pred ceEEEecCCCCCcc-cHHHHHccCCCC---C-CHHHHHHHHHHHhHHHHHH--hcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFAG-TIRQNIVYGKEV---A-TEAEIRKAAVLANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~g-TIreNl~~~~~~---~-~deei~~al~~a~l~~~I~--~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
.++|++|++.++.. |..+++...... . ..+.+...-....+.+.+. .+|+++.+... ..+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 79999999987754 544544321100 0 0000000000011112222 23333333211 13699999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh--cCEEEEEeCCEEEEecChhHHh
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++..
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999988754 7899999999999876 8999999999999999998653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=358.16 Aligned_cols=210 Identities=25% Similarity=0.410 Sum_probs=173.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999962 3469999999999999999999999999999999999999999999999998742 1223469
Q ss_pred EEEecCCCC---CcccHHHHHccCCC---------CC-CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1057 ALVSQEPTL---FAGTIRQNIVYGKE---------VA-TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1057 ~~V~Qdp~L---F~gTIreNl~~~~~---------~~-~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
+|+||+|.+ +..++++|+.++.. .. .++.+.++++..++.++. + ....+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------H----RQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------c----CCcccCCHHHHH
Confidence 999999865 45689999875311 00 122344555555554332 2 344579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999875 47899999999998865 9999766 8999999999998
Q ss_pred hh
Q 047171 1202 LS 1203 (1224)
Q Consensus 1202 l~ 1203 (1224)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.22 Aligned_cols=207 Identities=27% Similarity=0.461 Sum_probs=174.8
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--cEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVK--GNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
+.|+++||+++|++. +++++++|+||||||||||+++|+|+++|++ |+|.++|+++.+.+. .++.|
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~i 81 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGL 81 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCE
Confidence 467788888887642 3567999999999999999999999999999 999999999987665 35689
Q ss_pred EEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 394 GLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|||+|++.+|+. ||+|||.|+.. ..+.++..+ .+.+.++.+ |++........+|||||||||||||||+.
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 99999998742 122222221 233445555 66666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQ---GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999987643 7899999999999865 999999999999999999999875
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=340.55 Aligned_cols=185 Identities=29% Similarity=0.481 Sum_probs=163.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHH-hc
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKL-RS 1054 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~l-R~ 1054 (1224)
++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876654 56
Q ss_pred ceEEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1055 CIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+++|+||+|.+|.+ |+++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 79999999998875 555554 00 113699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh--hcCEEEEEeCCEEEEecChhHHh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ--KADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~--~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999875 4789999999999987 59999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=338.90 Aligned_cols=206 Identities=31% Similarity=0.521 Sum_probs=174.4
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh----cccEEecCCCCC
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR----SQMGLVNQEPIL 402 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~l 402 (1224)
.+-++|+||.-+ .+++..|.|-||||||||++++.|+++|++|+|+++|.|+..++.+.|| +++++|+|+.-|
T Consensus 41 vvGv~~~sl~v~---~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVE---EGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeec---CCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 467888888764 5779999999999999999999999999999999999999999987764 579999999999
Q ss_pred Ccc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 403 FST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 403 f~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
|+. ||.||..||.+ ....+| +...+.++++.. |++-+-...+.+||||+||||.|||||..||+||++||
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~e-----r~~~a~~~l~~V--gL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKAE-----REERALEALELV--GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred ccchhHhhhhhcceeecCCCHHH-----HHHHHHHHHHHc--CchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 865 99999999975 222221 112223344443 55555566778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 480 ATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
|+|||||--...+|+.|.++. -+||+|+|||++++.-+ .|||..|++|+|+..||++|++.++
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999887654 37999999999999755 9999999999999999999999875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=347.82 Aligned_cols=200 Identities=34% Similarity=0.554 Sum_probs=167.9
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
++|++|.. +++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|++|++.+|+.|++|
T Consensus 19 l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 19 LKDISVKF---EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence 44444443 256799999999999999999999999999999999999998877778888999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
|+.++......+ ...+.+.++.+ |++ ......+.+||||||||++||||++.+|++|||||||++||+++
T Consensus 96 ~l~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 166 (241)
T PRK14250 96 NIEYGPMLKGEK-------NVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166 (241)
T ss_pred HHhcchhhcCcH-------HHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 998764211111 01223444444 443 24566788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 489 ERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 489 ~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 167 ~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999998864 38999999999999876 999999999999999999998754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=365.47 Aligned_cols=200 Identities=29% Similarity=0.486 Sum_probs=167.2
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++|++|.. .++++++|+||||||||||+++|+|+++|++|+|++||+++...+. .+++||||+|++.+|+. |++
T Consensus 18 l~~isl~i---~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 18 LNDISLDI---PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHH
Confidence 44555544 2577999999999999999999999999999999999999977654 35689999999999975 999
Q ss_pred HHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 409 ENILIGKPG------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 409 ~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
||+.|+... .+.++..+ .+.+.++.+ |++.....++.+||||||||++|||||+.+|++||||||||
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s 165 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFG 165 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999987431 12222211 223444544 55555677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 483 ALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 166 ~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999988653 7899999999999876 999999999999999999999875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=350.62 Aligned_cols=206 Identities=36% Similarity=0.566 Sum_probs=169.2
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC---HHHHhcccEEecCCCCCCc-
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPILFS- 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~i~~v~Q~~~lf~- 404 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++.++||+|++.+|.
T Consensus 16 ~l~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 16 ALKDVSLSIN---PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred EEecceEEEc---CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 5667777653 57799999999999999999999999999999999999998776 4567889999999998886
Q ss_pred ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 405 TSIKENILIGKPGAS--METV---VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 405 ~ti~~ni~~g~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
.|++||+.++..... ...+ ........+.+.++.+ |++......+.+||||||||++|||||+.+|++|||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 170 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 599999987642110 0000 0001112234455555 56656777889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 480 ATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999998864 38999999999999985 9999999999999999998863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=388.35 Aligned_cols=103 Identities=27% Similarity=0.474 Sum_probs=91.4
Q ss_pred HHHhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeC
Q 047171 435 FIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDP--KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAH 510 (1224)
Q Consensus 435 ~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H 510 (1224)
++..+ |++.. .++...+|||||+|||+|||||..+| ++|||||||++||++....+.+.|+++. +|.|+|+|+|
T Consensus 470 ~L~~v--gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDV--GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEH 547 (924)
T ss_pred hHhhc--cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 44555 55543 67888999999999999999999986 8999999999999999999999998874 5899999999
Q ss_pred CcchhhccCEEEEE------eCceEEeecChHHHH
Q 047171 511 RLSTIRKADLIGVL------QSGRVIESGSHDVLM 539 (1224)
Q Consensus 511 ~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~ 539 (1224)
+++.+..||+|++| ++|+|+++|+.+++.
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99999999999999 899999999888764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=366.14 Aligned_cols=203 Identities=34% Similarity=0.603 Sum_probs=170.6
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---HhcccEEecCCCCCCc-
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQMGLVNQEPILFS- 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r~~i~~v~Q~~~lf~- 404 (1224)
.++|+||.. ++++++||+||||||||||+++|+|+++|++|+|.++|+++..++... +|++||||+|++.+|+
T Consensus 20 il~~vsl~i---~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 20 ALNNVSLHI---PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEEeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 345555554 256799999999999999999999999999999999999998877544 4788999999999886
Q ss_pred ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 405 TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 405 ~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
.|++||+.++.. ..+.++.. ..+.+.++.+ |++......+.+||||||||++|||||+.+|++|||||||+
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts 169 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 599999988632 12222221 1234455555 66666777889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 483 ALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||+.+...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 170 ~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999998864 38999999999999876 999999999999999999999764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=352.09 Aligned_cols=212 Identities=25% Similarity=0.388 Sum_probs=175.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4999999999963 3599999999999999999999999999999999998 6899999999999998888766654
Q ss_pred -ceEEEecCCCCCcc-cHHHHHccCCCC---------CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCC-CCC
Q 047171 1055 -CIALVSQEPTLFAG-TIRQNIVYGKEV---------ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGV-QLS 1118 (1224)
Q Consensus 1055 -~i~~V~Qdp~LF~g-TIreNl~~~~~~---------~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~-~LS 1118 (1224)
.++++||++.+|.+ |+.+|+.++... .+. +.+.++++..++. ++....... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD----------PSFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc----------hhhhccccccCCC
Confidence 58999999998875 799998754210 011 1122233322221 122333333 599
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEe
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~ 1195 (1224)
||||||++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q 047171 1196 GTQSSL 1201 (1224)
Q Consensus 1196 Gt~~eL 1201 (1224)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=348.54 Aligned_cols=203 Identities=35% Similarity=0.599 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH---HHhcccEEecCCCCCCc
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK---WLRSQMGLVNQEPILFS 404 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~i~~v~Q~~~lf~ 404 (1224)
..++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.++|++|++.+|.
T Consensus 19 ~il~~~s~~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVP---KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 34666666653 5679999999999999999999999999999999999999876543 34778999999999997
Q ss_pred -ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 405 -TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 405 -~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
.|++||+.++.. ..+..+. ...+++.++.+ |++........+||||||||++||||++.+|++|||||||
T Consensus 96 ~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 96 SRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 599999987532 1111111 12234556666 6666677788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 482 SALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
++||+.+...+.+.+.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999998864 38999999999999876 99999999999999999988764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=354.90 Aligned_cols=202 Identities=32% Similarity=0.534 Sum_probs=167.6
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC--HHHHhcccEEecCCC--CCCc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ--LKWLRSQMGLVNQEP--ILFS 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--~~~~r~~i~~v~Q~~--~lf~ 404 (1224)
.++||+|... +|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++++||||+|+| .+|+
T Consensus 22 ~l~~vs~~i~---~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 22 ALDNVNIEIE---DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 4555555442 56799999999999999999999999999999999999997754 356788999999998 5788
Q ss_pred ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc--ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 047171 405 TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE--TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480 (1224)
Q Consensus 405 ~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ 480 (1224)
.|++|||.++.. ..+.++..+. +.+.++.+ |++ +.....+.+||||||||++|||||+.+|++||||||
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEP 171 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEP 171 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 999999998642 2233333222 22334444 443 456778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhh-ccCEEEEEeCceEEeecChHHHHh
Q 047171 481 TSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIR-KADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
|++||+.+...+.+.++++. .|+|+|+|||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 172 TAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864 3899999999999986 499999999999999999998865
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=320.18 Aligned_cols=222 Identities=25% Similarity=0.472 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
.+..+|+..+|.. ++|+++|||+|++||.||+.|||||||||.+.++.|+.+|++|+|.+||.||+.++.+. -|-.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5788999999964 46999999999999999999999999999999999999999999999999999999887 4888
Q ss_pred eEEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
|||+||||.+|.+ ||+|||....+. .+.+.+.+-++..+++.++.+ .+...-...|.+||||||.|+-|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999975 999999754321 111112222222233333322 344444567889999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~-ti~~aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|+.+|||||.+++||-+-..|++.+..+. +|--|++.-|... |+.-|||.+++.+|+|...|+|+|++++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999998876 4556666669865 6777999999999999999999999985
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=366.08 Aligned_cols=206 Identities=31% Similarity=0.484 Sum_probs=171.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.++++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.||||
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v 91 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTV 91 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEE
Confidence 47788888888642 25679999999999999999999999999999999999999877654 4689999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEPILFST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+|++.+|+. ||+|||.|+... .+.++..+ .+.+.++.+ |++......+.+|||||||||||||||+.+|+
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999966 999999997531 12222111 122333333 45555666778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|+|++.|++++++..
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999988643 8999999999999765 999999999999999999999875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=329.94 Aligned_cols=218 Identities=30% Similarity=0.513 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~ 1055 (1224)
-++.++++.+|. ...+++||||++++||.+||+|||||||||+++++.|+|+|++|+|.++|.||..++++.. |..
T Consensus 4 lL~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 367899999995 4569999999999999999999999999999999999999999999999999999998885 778
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCC------------C--CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEV------------A--TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~------------~--~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
|+--+|.+.+|+ .|+.||+..+... . .+++..+.+ -.+.+++ |++..-.+...+||+|
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v-----gL~~~a~~~A~~LsyG 153 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV-----GLGELADRPAGNLSYG 153 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc-----CCchhhcchhhcCChh
Confidence 999999999997 5999999876321 1 222222211 1223333 6666667777889999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
|+.||-|||||..+|++|+||||.++|.++-...+.+.|++..+ |.|+++|-||++.+.+ ||||+||+.|+++.+|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 99999999999999999999999999999999999999999874 4899999999999877 99999999999999999
Q ss_pred hhHHhhc
Q 047171 1198 QSSLLSM 1204 (1224)
Q Consensus 1198 ~~eLl~~ 1204 (1224)
|+|..++
T Consensus 234 P~eV~~d 240 (250)
T COG0411 234 PEEVRNN 240 (250)
T ss_pred HHHHhcC
Confidence 9999875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=344.06 Aligned_cols=194 Identities=30% Similarity=0.473 Sum_probs=162.6
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH----HHHhcc
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL----RKLRSC 1055 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~----~~lR~~ 1055 (1224)
++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ..+|++
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 469999999999999999999999999999999999999999999999999765442 246789
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCC--CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEV--AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~--~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
++|++|++.+|. .|++||+.++... .. ++++.++++..++.+ .......+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-----------KLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-----------hhcCChhhCCHHHHHHHHHH
Confidence 999999999987 6999999874211 11 233444444444432 33344567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999999875 478999999999988789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=345.37 Aligned_cols=202 Identities=28% Similarity=0.453 Sum_probs=166.5
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH-hcccEEecCCCCCCcc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~~v~Q~~~lf~~-t 406 (1224)
.++|++|... +++++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +++++|++|++.+|+. |
T Consensus 15 ~l~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 15 ILFGVSLTVP---EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred EeeeeeEEEc---CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 4667777653 577999999999999999999999999999999999999988776554 6789999999999886 9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
++||+.++.......+.. ..+.+.++.++ +++......+.+||||||||++|||||+.+|++|||||||++||+
T Consensus 92 ~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 165 (222)
T cd03224 92 VEENLLLGAYARRRAKRK-----ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 165 (222)
T ss_pred HHHHHHHHhhhcCchhHH-----HHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 999998864322111111 11223333332 234445677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 487 ESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 487 ~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 166 ~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 166 KIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999998765 58999999999999866 9999999999999999988765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=354.61 Aligned_cols=193 Identities=28% Similarity=0.460 Sum_probs=164.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC--CCcccHHHHHhcCCCC--
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI--LFSTSIKENILIGKPG-- 417 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ni~~g~~~-- 417 (1224)
+++++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++|||+|+|. ++..||+|||.++...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 567999999999999999999999999999999999999988788888899999999983 5567999999987432
Q ss_pred CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 047171 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497 (1224)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 497 (1224)
.+.++..+. +.+.++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+.
T Consensus 112 ~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 184 (279)
T PRK13650 112 IPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIK 184 (279)
T ss_pred CCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 222222111 22334444 45555667778999999999999999999999999999999999999999999998
Q ss_pred HHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 498 QAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 498 ~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++. .|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 185 ~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 185 GIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 874 38999999999999978999999999999999999888654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=349.21 Aligned_cols=201 Identities=30% Similarity=0.500 Sum_probs=165.6
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti 407 (1224)
.++||+|+. +++++++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++||+|+|.+|. .|+
T Consensus 17 il~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 17 ALDDVSLDI---PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred eeeeeeEEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCH
Confidence 345555544 2567999999999999999999999999999999999999876543 2568999999999886 599
Q ss_pred HHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 408 KENILIGKPGA------SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 408 ~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
+||+.++.... ..++. ...+.+.++.+ |++........+||||||||++|||||+.+|++|||||||
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~ 164 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEI-----RAKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 164 (239)
T ss_pred HHHHhhhhhhccccccCCHHHH-----HHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999864211 11111 11234455555 5665667778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 482 SALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||+++.+.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 165 GALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999998864 37899999999998865 999999999999999999998653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=349.00 Aligned_cols=206 Identities=32% Similarity=0.526 Sum_probs=167.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH---HHHhcccEEecCCCCCCc-
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL---KWLRSQMGLVNQEPILFS- 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~~i~~v~Q~~~lf~- 404 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++++||+|++.+|+
T Consensus 17 il~~vs~~i~---~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 17 ALKNINLNIN---PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred eeecceEEEc---CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 3555555543 567999999999999999999999999999999999999877654 346788999999998886
Q ss_pred ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 405 TSIKENILIGKPGAS--METV---VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 405 ~ti~~ni~~g~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
.|++||+.++..... .... ........+.+.++.+ |++......+.+||||||||++|||||+.+|++|||||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 171 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 599999987642110 0000 0001112234455555 56666777889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 480 ATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
||++||+++.+.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999999998864 37999999999999865 9999999999999999998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=354.40 Aligned_cols=193 Identities=30% Similarity=0.547 Sum_probs=165.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC----CHHHHhcccEEecCCC--CCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL----QLKWLRSQMGLVNQEP--ILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~ 415 (1224)
+++++||+||||||||||+++|+|+++|++|+|.+||+++... +...+|++||||+|+| .+|+.|+.|||.++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~ 111 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGP 111 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhH
Confidence 4679999999999999999999999999999999999998653 3456788999999997 688889999999874
Q ss_pred CC--CCHHHHHHHHHHhcHHHHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 047171 416 PG--ASMETVVKAAQAANVHDFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492 (1224)
Q Consensus 416 ~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i 492 (1224)
.. .+.++..+ .+++.++.+ |+++ .....+.+||||||||++|||||+.+|+||||||||++||+.+...+
T Consensus 112 ~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 112 KNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred HHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 21 23333322 234556655 7763 56778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 493 QEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 493 ~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.++++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 185 ~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 185 MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99998864 48999999999999864 999999999999999999988764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=349.59 Aligned_cols=202 Identities=32% Similarity=0.524 Sum_probs=166.6
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEecCCC--CHHHHhcccEEecCCCCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKIKKL--QLKWLRSQMGLVNQEPIL 402 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~~~r~~i~~v~Q~~~l 402 (1224)
++|++|+. +++++++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +....+++++||+|++.+
T Consensus 17 l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 17 LKNINLDI---PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred ecceeEEE---CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 44444443 357799999999999999999999999998 99999999998753 355678899999999999
Q ss_pred CcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhcccccc----ccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 403 FSTSIKENILIGKPG---ASMETVVKAAQAANVHDFIMKLNDGYE----TKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 403 f~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
|+.|++||+.++... .+.++..+ .+.+.++.+ |++ ......+.+||||||||++|||||+.+|+++
T Consensus 94 ~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 166 (247)
T TIGR00972 94 FPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVL 166 (247)
T ss_pred CCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999875321 11222111 123334444 443 4567788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 167 LLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999987767999999999999865 999999999999999999998653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=365.09 Aligned_cols=211 Identities=25% Similarity=0.440 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+++...++++||||+
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 4555555555432 367799999999999999999999999999999999999999999888999999999
Q ss_pred CCCCC-CcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPIL-FSTSIKENILIGKPGAS--METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~l-f~~ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+ |+.|++||+.+++.... .... .......+++.++.+ |+.........+||||||||++|||||+++|++
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~-~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTW-TETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCC-CHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99987 57799999998752110 0000 000111223333433 444445667789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||||++||+.+...+.+.|+++. +|+|+|+++|+++.+.. ||+|++|++|++++.|+++|++..
T Consensus 161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 99999999999999999999998875 58999999999999965 999999999999999999998753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=347.21 Aligned_cols=207 Identities=28% Similarity=0.403 Sum_probs=168.0
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC----CCceEEECCccCCCCCHHHHhcceEEEecCCC-CCc--
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP----QSGSVMVDERNIKSYNLRKLRSCIALVSQEPT-LFA-- 1067 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p----~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~-LF~-- 1067 (1224)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +..+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999988654 233468999999995 343
Q ss_pred ccHHHHHccCCC---CCC---HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 047171 1068 GTIRQNIVYGKE---VAT---EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141 (1224)
Q Consensus 1068 gTIreNl~~~~~---~~~---deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLD 1141 (1224)
.|+.+|+.+... ... ++++.++++..++.+ + ++.....+.+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 589998854311 111 123444444433321 1 13345566789999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHH
Q 047171 1142 EATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1142 EaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
|||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++... +.+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN-PKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-cCCHHHH
Confidence 99999999999999999998753 7899999999999965 999999999999999999999865 3444443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=351.63 Aligned_cols=207 Identities=34% Similarity=0.553 Sum_probs=169.9
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~~r 390 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+...+|
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 6777777777532 3567999999999999999999999974 689999999999864 3455678
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKP--GA-SM----ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qria 463 (1224)
++++||+|++.+|+.|++||+.++.. .. .. +++.++++..++.+. +.+..++.+.+||||||||++
T Consensus 87 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 87 RRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDE-------VKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred hcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHHHHHH
Confidence 89999999999998999999987631 11 11 222333333322221 123456778999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 999999999999999999999999999999999988778999999999999865 999999999999999999998754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=348.36 Aligned_cols=210 Identities=29% Similarity=0.439 Sum_probs=174.7
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++||++. .+|+|+||+|++||++||+|+||||||||+++|.|+++ .+|+|.+||.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 56777774 17999999999999999999999999999999999986 49999999999988888888889999
Q ss_pred EecCCC-CCcccHHHHHccCCCCC-CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc---
Q 047171 1059 VSQEPT-LFAGTIRQNIVYGKEVA-TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK--- 1133 (1224)
Q Consensus 1059 V~Qdp~-LF~gTIreNl~~~~~~~-~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~--- 1133 (1224)
+||++. .+..|+++|+.++.... +.++.. ..+++.+..+ |++.........||||||||++||||+++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999985 45689999999764321 111111 1123333333 34444455667899999999999999997
Q ss_pred ----CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1134 ----NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1134 ----~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 47899999999998755 99999999999999999999865
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=355.44 Aligned_cols=193 Identities=26% Similarity=0.468 Sum_probs=162.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC----CCHHHHhcccEEecCCC--CCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK----LQLKWLRSQMGLVNQEP--ILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~ 415 (1224)
++++++|+||||||||||+++|+|+++|++|+|++||.++.. .+...+|+.||||+|+| .+|..|+.||+.|+.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 466999999999999999999999999999999999999863 33566888999999998 788899999999874
Q ss_pred CC--CCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 047171 416 PG--ASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492 (1224)
Q Consensus 416 ~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i 492 (1224)
.. .+.++..+ .+.+.++.+ |++ ......+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 111 ~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l 183 (288)
T PRK13643 111 QNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183 (288)
T ss_pred HHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence 32 22333221 123344444 443 345677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 493 QEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 493 ~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.++++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 184 ~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 184 MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99998764 58999999999999865 999999999999999999998653
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=333.57 Aligned_cols=177 Identities=37% Similarity=0.599 Sum_probs=159.0
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++||+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 047171 1059 VSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138 (1224)
Q Consensus 1059 V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~IL 1138 (1224)
+|| +++..++.+++. ..+.+||||||||++||||++++|++|
T Consensus 78 ~~q---------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 445555554432 345679999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEec
Q 047171 1139 LLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1139 lLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~G 1196 (1224)
||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998764 789999999999985 49999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=348.08 Aligned_cols=208 Identities=31% Similarity=0.474 Sum_probs=170.1
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCC--CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKK--LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~~~~ 389 (1224)
-|+++|++++|++. +++++++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+....
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 47788888887642 25679999999999999999999999997 48999999999853 344567
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPG---ASM----ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
|++|+||+|++.+|+.|++|||.++... ... +++.++++..++.+. +......++.+||||||||+
T Consensus 87 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred hhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHHHHHH
Confidence 8899999999999989999999986421 111 122333333222111 12234557789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999865 999999999999999999998764
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=335.63 Aligned_cols=484 Identities=17% Similarity=0.217 Sum_probs=322.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccC-CCCHHHHHHHHHhhHHHHHH
Q 047171 690 KSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQD-ENTSAAICARLANEAHLVRS 768 (1224)
Q Consensus 690 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~-~~~~g~l~~rls~d~~~i~~ 768 (1224)
......+++.+.++..+..+..+...-..-+...+.+..+|...|+.-....++--|.. .|| -.|+++|++..-.
T Consensus 122 ~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNP----DQrltqDv~kf~~ 197 (659)
T KOG0060|consen 122 KRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNP----DQRLTQDVEKFCR 197 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCCh----HHHHhHHHHHHHH
Confidence 33344455556666666666666666666666677777777777776665555555533 222 2678888888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHH
Q 047171 769 FIADRMSLLIQVFFSASLAYTLSL-LVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRT 847 (1224)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~t 847 (1224)
.+.+..+.++.+.+.++....-.+ ..+|.-+..++..+.+..++.....+.+-+...++++...+....-++...+...
T Consensus 198 ~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~ 277 (659)
T KOG0060|consen 198 QLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEE 277 (659)
T ss_pred HHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchh
Confidence 666666666555544433322222 3344444444444443333444444444455556666677777777788888899
Q ss_pred HHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcCHHHHHHHHHHH-
Q 047171 848 ITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIM----NQGLVSPKQLFQAFFLL- 922 (1224)
Q Consensus 848 Ira~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~t~~~~~~~~~~~- 922 (1224)
|.-|+.++.......+..+...........+.-+...+..++.++..++.+...+.-+ ..+.+++.++...+..-
T Consensus 278 iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na 357 (659)
T KOG0060|consen 278 IAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNA 357 (659)
T ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhH
Confidence 9999887655544444444433333332222223333333333443333322222212 23456777765444322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-------------CCCCCCC-----CCCCCCCcccEEEE
Q 047171 923 ---MSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID-------------PEDPKAS-----EDIEEPTKGFIELK 981 (1224)
Q Consensus 923 ---~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~-------------~~~~~~~-----~~~~~~~~g~I~~~ 981 (1224)
......++.+.....++.+-.+-..||-++.+...+.. .+..... .+..++.+..|+|+
T Consensus 358 ~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e 437 (659)
T KOG0060|consen 358 FVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFE 437 (659)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEee
Confidence 22233444444444555555556667766654211110 0000000 01223445679999
Q ss_pred EEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 982 ~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
+|++.=|++ +..+.+|+||+|+.|+.+-|+||||||||+|++.|.|+++..+|++.--...-. +.+-|+||
T Consensus 438 ~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQ 508 (659)
T KOG0060|consen 438 EVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQ 508 (659)
T ss_pred eeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecC
Confidence 999998865 445678899999999999999999999999999999999999999975332111 34899999
Q ss_pred CCCCCcccHHHHHccCC-------CCCCHHHHHHHHHHHhHHHHHHhcccccccccC-CCCCCCChHHHHHHHHHHHHcc
Q 047171 1062 EPTLFAGTIRQNIVYGK-------EVATEAEIRKAAVLANAHEFISSTEDGYDTYCG-ERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~~~-------~~~~deei~~al~~a~l~~~I~~lp~gldt~vg-e~G~~LSGGQrQRlaLARAll~ 1133 (1224)
.|++-.||+||-+.|.. ..++|++|.+.++.+++.+.+.. .+|+|+++. +-...||+||+||+|+||.++.
T Consensus 509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~ 587 (659)
T KOG0060|consen 509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH 587 (659)
T ss_pred CCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence 99999999999998872 25689999999999999887765 468997775 5577899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKN 1189 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~ 1189 (1224)
+|++-+|||+|||+|.+.|..+.+.+++. |.|.|.|.||-+.-+.-|.++-|+.
T Consensus 588 kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 588 KPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999887 8999999999999999999999985
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=348.87 Aligned_cols=203 Identities=29% Similarity=0.542 Sum_probs=170.8
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti 407 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|++|++.+|+ .|+
T Consensus 16 ~l~~is~~i~---~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 16 AVNNLNLEIA---KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred EeeeeEEEEC---CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 4666666653 567999999999999999999999999999999999999988777778889999999999886 599
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccc--cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYET--KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
+||+.++.. ..+.++ ....+.+.++.+ |+.. ...+.+.+||||||||++||||++++|++|||||||++
T Consensus 93 ~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 165 (242)
T cd03295 93 EENIALVPKLLKWPKEK-----IRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGA 165 (242)
T ss_pred HHHHHHHHHHcCCCHHH-----HHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 999987532 111111 112234556665 5553 56778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 484 LDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 484 lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||+.+...+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 166 LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999998864 38999999999998765 999999999999999999988653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=351.49 Aligned_cols=204 Identities=33% Similarity=0.574 Sum_probs=168.1
Q ss_pred EEEEeEEEECCC-C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYPT-R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~-~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
|+++||+|+|++ . .+++++||+||||||||||+++|+|+++|++|+|.++|+++...+..++++.||||
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 556666666642 1 35779999999999999999999999999999999999999888888888899999
Q ss_pred cCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 397 NQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 397 ~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
+|+| .++..|+.||+.|+.. ..+.++..+ .+.+.++.+ |+.........+||||||||++|||||+.+|
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9998 5788899999998632 122222111 122334443 4444456667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999998864 58999999999999854 999999999999999998764
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=336.38 Aligned_cols=190 Identities=37% Similarity=0.583 Sum_probs=166.4
Q ss_pred ccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
+.++++|++++|++. +++++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 458888888888642 25679999999999999999999999999999999999999888888888999
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+||+|+|.+|++|++||+.+..+ .+.+++.++++ +++++.+||||||||++||||++.+|+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999986542 23333322221 356788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecC
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~ 534 (1224)
++||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999999998777899999999999998899999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=336.80 Aligned_cols=195 Identities=23% Similarity=0.388 Sum_probs=168.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999963 35899999999999999999999999999999999999999999999999886543 56789999
Q ss_pred EEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1058 LVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1058 ~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
|+||++.++ ..|++||+.+..+..+++++.++++..++.++. + ....+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-------D----RPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-------c----CchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 589999998765444566777777777765432 2 2345799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEE
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTI-QKADNIVVI 1187 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti-~~aD~I~vl 1187 (1224)
+|||||||++||+.+.+.+.+.|++.. +++|+|++||+...+ ..||+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998765 478999999987766 458999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=342.61 Aligned_cols=193 Identities=34% Similarity=0.565 Sum_probs=160.0
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti 407 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++||+|++.+|. .|+
T Consensus 15 il~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 15 ALDDLSLTVE---PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eecceeEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcH
Confidence 4666666653 567999999999999999999999999999999999999876543 4678999999998886 599
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++||
T Consensus 90 ~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999876321 1111111 1233455555 56666677788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 486 AESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
+++...+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999998864 38999999999999866 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=365.54 Aligned_cols=200 Identities=31% Similarity=0.466 Sum_probs=166.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++|++|+. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||||+|++.+|+. |++
T Consensus 19 l~~vsl~i---~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 19 SKDINLDI---HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred EeeeEEEE---cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEEEeCCcccCCCCCHH
Confidence 34444443 25679999999999999999999999999999999999999876653 4679999999999975 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 409 ENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 409 ~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
|||.|+.. ..+.++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++||||||||+||+
T Consensus 94 eni~~~~~~~~~~~~~~~-----~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~ 166 (369)
T PRK11000 94 ENMSFGLKLAGAKKEEIN-----QRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166 (369)
T ss_pred HHHHhHHhhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99998743 12222211 1233445555 566666777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 487 ESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 487 ~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 167 ~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999998864 38999999999998865 999999999999999999998765
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=345.83 Aligned_cols=202 Identities=27% Similarity=0.448 Sum_probs=169.6
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-t 406 (1224)
.++|++|... ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.+|+. |
T Consensus 15 ~l~~vs~~i~---~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 15 VVNGVSLSVK---QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred eeccceeEec---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 4555555543 56799999999999999999999999999999999999998776554 35679999999999986 9
Q ss_pred HHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 407 IKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 407 i~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
++||+.++.+. ...++. ...+++.++.+ |++......+.+||||||||++||||++.+|++|||||||++|
T Consensus 92 v~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 164 (232)
T cd03218 92 VEENILAVLEIRGLSKKER-----EEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGV 164 (232)
T ss_pred HHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence 99999875321 111111 12334566666 6777778888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 485 DAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
|+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 165 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 165 DPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999998764 58999999999988765 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=348.91 Aligned_cols=211 Identities=33% Similarity=0.536 Sum_probs=172.9
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHH
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKW 388 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~ 388 (1224)
+.|+++|++++|++. +++++++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+...
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 457888888888643 3567999999999999999999999986 589999999999853 45567
Q ss_pred HhcccEEecCCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHH
Q 047171 389 LRSQMGLVNQEPILFSTSIKENILIGKP---GASMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qria 463 (1224)
+|++|+|++|++.+|+.|++||+.++.. ..+.++..+ .+.+.++.+ +.++....++...+||||||||++
T Consensus 92 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 92 LRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-----RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHH-----HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 8889999999999999999999987632 122222111 112233332 112234567788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999988778899999999999865 999999999999999999998754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=344.40 Aligned_cols=225 Identities=24% Similarity=0.387 Sum_probs=186.6
Q ss_pred HHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCC--------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 299 TRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPT--------RPDTPTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 299 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
+.+.+++..+++.+. ..+.+...+.|+++|+++.... -+++++++|+|+||||||||+++|+|+++|+
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~ 90 (282)
T cd03291 15 EGFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS 90 (282)
T ss_pred HHHHHHHhccccccc----ccccCCCCCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345566655443222 1222333456888888885311 1357799999999999999999999999999
Q ss_pred CcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCC
Q 047171 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450 (1224)
Q Consensus 371 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 450 (1224)
+|+|.++| .|+|++|++.+|+.|++||+.++.. ....++.++++..++.+.+..+|.++++.++++
T Consensus 91 ~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~ 156 (282)
T cd03291 91 EGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156 (282)
T ss_pred CcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCC
Confidence 99999998 3999999999999999999998743 233445566666778888999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEeCCcchhhccCEEEEEeCceE
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA-LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
+.+||||||||++|||||+.+|++|||||||++||+++...+.+. ++.+.+++|+|++||+++.+..||+|++|++|++
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i 236 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999998888765 4556668999999999999988999999999999
Q ss_pred EeecChHHHHhh
Q 047171 530 IESGSHDVLMQM 541 (1224)
Q Consensus 530 ~~~g~~~~l~~~ 541 (1224)
++.|+++++.+.
T Consensus 237 ~~~g~~~~~~~~ 248 (282)
T cd03291 237 YFYGTFSELQSL 248 (282)
T ss_pred EEECCHHHHHhc
Confidence 999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=314.06 Aligned_cols=213 Identities=28% Similarity=0.456 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+.+|++++-. .+.+|+++||+++|||.+||+||||||||||+++|.|...|++|++.++|+++.++++.++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 78899998764 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHccCCC-C-----CCHHH--HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1058 LVSQEPTL-FAGTIRQNIVYGKE-V-----ATEAE--IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1058 ~V~Qdp~L-F~gTIreNl~~~~~-~-----~~dee--i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+.||+..+ |..|++|-+.+|+- . ..+++ ..+++..+++..|-. ..-..||||||||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----------R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----------RDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----------cchhhcCchHHHHHHHH
Confidence 99999875 89999999999852 1 11333 566777777665532 22346999999999999
Q ss_pred HHHcc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhH
Q 047171 1129 RAVLK------NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1129 RAll~------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|.|.+ ++++|+||||||+||..-...+.+..+++. +|..|++|=|+|.... .||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 346999999999999999999999999876 5789999999999865 599999999999999999999
Q ss_pred Hhhc
Q 047171 1201 LLSM 1204 (1224)
Q Consensus 1201 Ll~~ 1204 (1224)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 9874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=343.47 Aligned_cols=199 Identities=28% Similarity=0.474 Sum_probs=165.3
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti 407 (1224)
.++|++|+.. +++.+||+||||||||||+++|+|+++|++|+|.++|+++.... ..++++++||+|++.+| ..|+
T Consensus 17 il~~is~~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 17 AVDDLSLNVY---KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred eecceEEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEEecCcCCccccCCH
Confidence 4677777663 56799999999999999999999999999999999999986543 56678899999999988 4699
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.++.. ....++.. ..+++.++.+ |++........+||||||||++||||++.+|++|||||||++||
T Consensus 93 ~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 165 (220)
T cd03263 93 REHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165 (220)
T ss_pred HHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 999987421 11221111 1233445544 44445566678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 486 AESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 166 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 166 PASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999988778999999999999975 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=352.98 Aligned_cols=193 Identities=30% Similarity=0.508 Sum_probs=162.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC----CCHHHHhcccEEecCCC--CCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK----LQLKWLRSQMGLVNQEP--ILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~ 415 (1224)
+++++||+||||||||||+++|+|+++|++|+|.+||+++.. .+....|+.||||+|+| .+|+.||+|||.|+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 467999999999999999999999999999999999999863 34556788999999998 688889999999874
Q ss_pred C--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 047171 416 P--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492 (1224)
Q Consensus 416 ~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i 492 (1224)
. ..+.++..+ .+++.++.+ |++ .....++.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 112 ~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 112 MNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred HHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 2 123333222 123445554 554 335677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 493 QEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 493 ~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.|.++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 185 ~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 185 MEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99998864 38999999999999865 999999999999999999988654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=353.95 Aligned_cols=193 Identities=30% Similarity=0.489 Sum_probs=161.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC------------------------CCHHHHhcccEEec
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK------------------------LQLKWLRSQMGLVN 397 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~------------------------~~~~~~r~~i~~v~ 397 (1224)
+++++||+||||||||||+++|+|+++|++|+|+++|.++.. .+...+|+.||||+
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 466999999999999999999999999999999999987632 13456788999999
Q ss_pred CCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 398 QEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 398 Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+| .+|..||+|||.|+.. ..+.++..+ .+.+.++.+ |++ ........+||||||||++|||||+.+|
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P 184 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIELV--GLDESYLQRSPFELSGGQKRRVALAGILAMEP 184 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 986 6788899999998743 223333322 123444554 554 4567888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998864 58999999999998755 999999999999999999998654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=323.10 Aligned_cols=159 Identities=31% Similarity=0.589 Sum_probs=148.5
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-HHHhcce
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~-~~lR~~i 1056 (1224)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999963 369999999999999999999999999999999999999999999999999988776 4467889
Q ss_pred EEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
+|+|| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
+|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998875 47899999999998865 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=344.06 Aligned_cols=202 Identities=30% Similarity=0.506 Sum_probs=170.5
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti 407 (1224)
.++||+|... ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++|++|++.++ ..|+
T Consensus 16 ~l~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 16 ALDDVSFTVR---PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEeCCCCCCcccCcH
Confidence 4666776653 57799999999999999999999999999999999999998766544 45899999999874 5699
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.++.. ....++.. ..+.++++.+ |++......+.+||||||||++|||||+++|+++||||||++||
T Consensus 92 ~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD 164 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164 (236)
T ss_pred HHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 999987532 11222111 1234566665 67777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 486 AESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.+.+.+.|.++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 165 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 165 PASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999998875 48999999999999988999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=342.88 Aligned_cols=192 Identities=33% Similarity=0.525 Sum_probs=161.3
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH----HHhcccEEecCCCCCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK----WLRSQMGLVNQEPILF 403 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~r~~i~~v~Q~~~lf 403 (1224)
..++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+++++||+|++.+|
T Consensus 18 ~il~~~s~~i~---~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 18 QALKGVSLSIE---KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eEEeeeEEEEc---CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 45777777764 5679999999999999999999999999999999999999877643 2457899999999998
Q ss_pred cc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 047171 404 ST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480 (1224)
Q Consensus 404 ~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ 480 (1224)
.. |++||+.++... ...++. ...+.+.++.+ |++......+.+||||||||++|||||+.+|++||||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 95 PDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred CCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 76 999999986421 111111 12234556666 666667778899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhccCEEEEEeCceE
Q 047171 481 TSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
|++||+++.+.+.+.|.++.+ |+|+|++||+++.+..||++++|++|++
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999988753 8999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=341.22 Aligned_cols=191 Identities=30% Similarity=0.535 Sum_probs=155.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH---HHhcccEEecCCCCCCc-
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK---WLRSQMGLVNQEPILFS- 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~i~~v~Q~~~lf~- 404 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|++++|++|++.+|.
T Consensus 18 il~~isl~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 18 ALDNLNFHIT---KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred EEEeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 3555555542 5679999999999999999999999999999999999998766543 36789999999999886
Q ss_pred ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 405 TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 405 ~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
.|++||+.++.. ....++. ...+.+.++.+ |++........+||||||||++|||||+.+|++|||||||+
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 167 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDA-----NERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTG 167 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 499999987521 1111111 11223344444 45555566778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceE
Q 047171 483 ALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i 529 (1224)
+||+++.+.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|+|
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 168 NLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999998864 48999999999999975 999999999975
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.20 Aligned_cols=209 Identities=33% Similarity=0.542 Sum_probs=172.4
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCC--CCHHH
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKK--LQLKW 388 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~~~ 388 (1224)
+.|+++||+++|++. +++++++|+||||||||||+++|+|+++| ++|+|+++|+++.. .+...
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 468889999988643 35779999999999999999999999975 89999999999864 34566
Q ss_pred HhcccEEecCCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHH
Q 047171 389 LRSQMGLVNQEPILFSTSIKENILIGKP--GA--SM----ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~q 460 (1224)
+|+.++||+|++.+|+.|+.||+.++.. .. +. +++.++++..++.++ +.+..++.+.+|||||||
T Consensus 98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE-------VKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHHH
Confidence 7889999999999998899999987531 11 11 122223332222211 123456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 461 riaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778899999999999965 9999999999999999999987
Q ss_pred hh
Q 047171 540 QM 541 (1224)
Q Consensus 540 ~~ 541 (1224)
..
T Consensus 251 ~~ 252 (267)
T PRK14235 251 TN 252 (267)
T ss_pred hC
Confidence 53
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=359.57 Aligned_cols=206 Identities=25% Similarity=0.399 Sum_probs=173.3
Q ss_pred ccEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE----ecCCCCHHHH---h-cccEEec
Q 047171 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH----KIKKLQLKWL---R-SQMGLVN 397 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~ 397 (1224)
+..-++|+||..+ ++++++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+
T Consensus 36 ~~~~l~~vsf~i~---~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIE---EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 4567999999974 57799999999999999999999999999999999997 5666665544 3 5799999
Q ss_pred CCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFS-TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+ .|++||+.++.. ..+.++. ...+.+.++.+ |++......+.+||||||||++|||||+.+|+|
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999997 599999998742 1122211 12233445555 565556777789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+...+++.|.++.+ ++|+|+|||+++++.. ||+|++|++|++++.|++++++..
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999988653 8999999999999855 999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=362.14 Aligned_cols=206 Identities=27% Similarity=0.455 Sum_probs=173.6
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.++ .++.||||
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v 96 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMM 96 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEE
Confidence 48888888888642 3567999999999999999999999999999999999999987664 46789999
Q ss_pred cCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+|++.+|+. ||+|||.|+.. ..+..+..+ .+.+.++.+ |+......+..+|||||||||||||||+.+|+
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999976 99999998743 122222221 223445554 55556677888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||||||+||+.+...+.+.+.++. .|.|+|+|||+++++.. ||+|++|++|++++.|+++|+...
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999988887653 47999999999999765 999999999999999999999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=342.75 Aligned_cols=191 Identities=32% Similarity=0.493 Sum_probs=160.7
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHH
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNI 1074 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl 1074 (1224)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+ .+|+||++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998765432 489999999987 6999999
Q ss_pred ccCC----CCCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCC
Q 047171 1075 VYGK----EVATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSA 1146 (1224)
Q Consensus 1075 ~~~~----~~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSa 1146 (1224)
.++. +..++++ +.+.++..+ ++........+||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVG-----------LTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcC-----------CHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8642 1223222 233333333 33333445567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1147 LDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1147 LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998875 37899999999999865 9999999999999999876664
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=341.03 Aligned_cols=194 Identities=29% Similarity=0.503 Sum_probs=160.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|..+ +++.++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++|++++|++|++.+|+. |+
T Consensus 20 il~~~sl~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 20 AVDGVSFTVK---PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eecceEEEEc---CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCH
Confidence 3445555442 467999999999999999999999999999999999999875 345678899999999999985 99
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.+... ..+.++.. ..+++.++.+ |++......+.+||||||||++||||++.+|++|||||||++||
T Consensus 96 ~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 96 RENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 999986422 11222211 1233455555 66666778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 486 AESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
+.+.+.+.+.|.++. +|+|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999998864 58999999999999875 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=382.21 Aligned_cols=216 Identities=25% Similarity=0.473 Sum_probs=180.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccCCCCCHHH-Hh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNIKSYNLRK-LR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~~~~-lR 1053 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCCC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKEV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
++++||||++.+|. .|++||+.++... .+.++..+. +.+++..+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 88999999998886 5999999876321 122222211 22333332 34333445556899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999998874 47899999999999876 9999999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=363.02 Aligned_cols=228 Identities=26% Similarity=0.429 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC----CceEEECCccCCCCCHHH
Q 047171 977 FIELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ----SGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~----~G~I~idG~di~~~~~~~ 1051 (1224)
-++++|++..|..... .++++||||+|.+||.+||||.|||||||++++|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975522 25899999999999999999999999999999999999987 899999999999988776
Q ss_pred Hh----cceEEEecCCC-CCc--ccHHHHHc----cCCCCCC---HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCC
Q 047171 1052 LR----SCIALVSQEPT-LFA--GTIRQNIV----YGKEVAT---EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQL 1117 (1224)
Q Consensus 1052 lR----~~i~~V~Qdp~-LF~--gTIreNl~----~~~~~~~---deei~~al~~a~l~~~I~~lp~gldt~vge~G~~L 1117 (1224)
+| +.|++|||||. .++ .||.+-|. ...+... .++..+.++.+++ |+.-.. ..-+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCccc
Confidence 54 67999999995 554 36665553 2211111 1233334444443 322111 3467889
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
|||||||+.||+||..+|++||+||||++||+.+++.|.+.|+++. .|.++|+|||++..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999887 58899999999999977 99999999999999
Q ss_pred ecChhHHhhcCCCchhHHHH
Q 047171 1195 QGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1195 ~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
.|+.++++++ +...|.+..
T Consensus 236 ~G~~~~i~~~-p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSN-PQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhc-cCCcccHHH
Confidence 9999999998 455565543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=346.57 Aligned_cols=209 Identities=31% Similarity=0.490 Sum_probs=167.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecC--CCCHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIK--KLQLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~--~~~~~~~r 390 (1224)
|+++||+++|++. .++++++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+...+|
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 5555666655432 25679999999999999999999999987 4999999999987 44556678
Q ss_pred cccEEecCCCCCCcc-cHHHHHhcCCC--CC--CHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHH
Q 047171 391 SQMGLVNQEPILFST-SIKENILIGKP--GA--SMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~--~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qria 463 (1224)
++++|++|++.+|+. |+.||+.++.. .. ..++..+. +.+.++.+ ...+.......+.+||||||||++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER-----VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH-----HHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 899999999999976 99999987531 10 12221111 12223332 111123456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999987778999999999999875 999999999999999999998754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=349.80 Aligned_cols=207 Identities=31% Similarity=0.497 Sum_probs=171.4
Q ss_pred EEEEeEEEECCC-C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhcccE
Q 047171 328 IEFKDVDFSYPT-R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMG 394 (1224)
Q Consensus 328 i~~~~v~f~y~~-~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i~ 394 (1224)
|+++||+|+|++ . .+|+++||+|+||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.||
T Consensus 6 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig 85 (283)
T PRK13636 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG 85 (283)
T ss_pred EEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence 677777777742 2 356799999999999999999999999999999999999984 334566888999
Q ss_pred EecCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 5788899999987532 1222222111 22334444 55555677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++|||||||++||+.+...+.+.++++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988653 8999999999999974 999999999999999999998753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=342.22 Aligned_cols=207 Identities=26% Similarity=0.395 Sum_probs=167.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH-HHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK-WLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~i~~v 396 (1224)
|+++||+++|++. .++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.++|+
T Consensus 6 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred EEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 5555566555432 25779999999999999999999999999999999999999887754 367789999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 397 NQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+|++.+|+. |++||+.++......++..+. +++.+..++. ++........+||||||||++||||++.+|+||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999975 999999886432222222211 2233333321 222344567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 476 LLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999998764 58999999999998765 99999999999999999999864
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=345.55 Aligned_cols=202 Identities=30% Similarity=0.468 Sum_probs=165.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF- 403 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf- 403 (1224)
++|++|+. +++++++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+|+.||||+|++.+|
T Consensus 19 l~~is~~i---~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 19 LDGVNLEI---PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eecceeEE---cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 44444444 25679999999999999999999999974 7999999999998888778889999999999765
Q ss_pred cccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhccccc----cccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 404 STSIKENILIGKPG----ASMETVVKAAQAANVHDFIMKLNDGY----ETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 404 ~~ti~~ni~~g~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+.|++||+.++... ...++.. ..+.+.++.+ |+ +......+.+||||||||++|||||+++|++|
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 168 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKSKKELQ-----ERVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL 168 (250)
T ss_pred CCcHHHHHHHHHHhccccCCHHHHH-----HHHHHHHHHc--CCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 56999999876321 0111111 1122334433 22 23456677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 169 LADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 999999999999999999999987778999999999999865 999999999999999999998754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=378.72 Aligned_cols=213 Identities=25% Similarity=0.451 Sum_probs=181.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHh-cc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR-SC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR-~~ 1055 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999887776654 57
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCCCC--HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEVAT--EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~~~--deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++||||++.+|. .|++||+.++..... ++++.++++.. |++........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 999999998886 599999988643211 12333333333 3333334455679999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998875 47899999999999866 99999999999999999988764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=349.20 Aligned_cols=207 Identities=32% Similarity=0.529 Sum_probs=171.7
Q ss_pred EEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 328 IEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 328 i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
|+++||+++|++. .+|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|||
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 6677777777531 2567999999999999999999999999999999999999988877778889999
Q ss_pred ecCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccC
Q 047171 396 VNQEP--ILFSTSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRD 471 (1224)
Q Consensus 396 v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~ 471 (1224)
++|++ .+++.|+.|||.++... .+.++..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99998 45677999999986321 12222211 122333333 445556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 472 PKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 472 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|++|||||||++||+.+...+.+.|.++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999988753 7999999999999988999999999999999999988754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=339.29 Aligned_cols=193 Identities=26% Similarity=0.467 Sum_probs=158.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|... ++ .++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++|++|++.+|.. |+
T Consensus 15 ~l~~vs~~i~---~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 15 ALDGVSLTLG---PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEcceeEEEc---CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCH
Confidence 5666666653 36 89999999999999999999999999999999999988766 6678899999999999876 99
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.+... ..+.++..+ .+.+.++.+ |++........+||||||||++||||++.+|++|||||||++||
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 162 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKA-----RVDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHH-----HHHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999986421 111111111 122333333 33333445668899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 486 AESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 163 PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999988777999999999999975 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=348.43 Aligned_cols=207 Identities=23% Similarity=0.408 Sum_probs=169.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH---HHhcccE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK---WLRSQMG 394 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~~i~ 394 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++++++
T Consensus 8 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred EEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEE
Confidence 5556666655422 35679999999999999999999999999999999999998876543 3577899
Q ss_pred EecCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEPILFST-SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~~lf~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|++|++.+|+. |+.||+.++.. ..+.++. ...+.+.++.+ |++........+||||||||++|||||+.
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL-----HSTVMMKLEAV--GLRGAAKLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 99999987521 1112111 11223344444 55555667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998864 37999999999999876 999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=339.45 Aligned_cols=199 Identities=26% Similarity=0.480 Sum_probs=163.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|... +++++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++|++.+++. |+
T Consensus 15 il~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 15 AVRGVSFRVR---RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred eeeceeEEEC---CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcH
Confidence 4667777663 5679999999999999999999999999999999999988653 35667789999999988875 99
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||++.+|++|||||||++||
T Consensus 91 ~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD 163 (220)
T cd03265 91 WENLYIHARLYGVPGAERR-----ERIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163 (220)
T ss_pred HHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCC
Confidence 999987421 11111111 1223445554 44444566678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 486 AESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
+++.+.+.+.|.++. + |+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 164 PQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999998764 3 7899999999999876 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=353.41 Aligned_cols=207 Identities=29% Similarity=0.490 Sum_probs=170.4
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...|++||||
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~v 85 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGVV 85 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEEE
Confidence 47777777777542 357799999999999999999999999999999999999997654 4578899999
Q ss_pred cCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEPILFS-TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
||++.++. .|++||+.+... ..+..+..+ .+.+.++.+ |+.........+||||||||++|||||+.+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 99999886 599999986321 122222222 123344443 34444455667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999998874 58999999999999976 999999999999999999998754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=335.72 Aligned_cols=185 Identities=32% Similarity=0.509 Sum_probs=156.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC--CCCccc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTS 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--~lf~~t 406 (1224)
.++|++|+.. ++++++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|++|++ .+|+.|
T Consensus 15 ~l~~v~~~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~t 88 (205)
T cd03226 15 ILDDLSLDLY---AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDS 88 (205)
T ss_pred eeeeeeEEEc---CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhcc
Confidence 5788888764 567999999999999999999999999999999999998854 45677899999998 467889
Q ss_pred HHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 407 IKENILIGKPGAS--METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 407 i~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
++||+.++.+... .+++. +.++.+ |++........+||||||||++|||||+.+|++|||||||++|
T Consensus 89 v~e~l~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 157 (205)
T cd03226 89 VREELLLGLKELDAGNEQAE---------TVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred HHHHHhhhhhhcCccHHHHH---------HHHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 9999988643221 12233 334444 4444456667899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEE
Q 047171 485 DAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVI 530 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~ 530 (1224)
|+++.+.+.+.|+++ .+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999886 468999999999999975 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=342.95 Aligned_cols=203 Identities=33% Similarity=0.574 Sum_probs=170.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC--CHHHHhcccEEecCCCCCCc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL--QLKWLRSQMGLVNQEPILFS-T 405 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~i~~v~Q~~~lf~-~ 405 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++... +..+++++++|++|++.+|. .
T Consensus 16 il~~~s~~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 16 VLHNIDLNID---QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred EeeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4566666653 5779999999999999999999999999999999999998764 34567889999999998886 5
Q ss_pred cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 406 SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 406 ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
|++||+.++.. ..+.++.. ..+.+.++.+ |++.....++..||||||||++||||++.+|+++||||||+
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 165 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987631 11222211 1234556655 67766778889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 483 ALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||+++...+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999998764 58999999999999975 999999999999999999988654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=341.52 Aligned_cols=207 Identities=25% Similarity=0.452 Sum_probs=171.3
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-t 406 (1224)
.++|++|+.. ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.+|++ |
T Consensus 17 ~l~~vs~~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 17 ALNDLSLYVD---PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred EeeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 4555555543 56799999999999999999999999999999999999998776654 35679999999999986 9
Q ss_pred HHHHHhcCCCCCC-H-HH---HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 407 IKENILIGKPGAS-M-ET---VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 407 i~~ni~~g~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
++||+.++..... . .. .........++++++.+ |++........+||||||||++||||++.+|++|||||||
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988642100 0 00 00011122345666666 6666778888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 482 SALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 172 AGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999988778999999999999976 99999999999999999998764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=379.54 Aligned_cols=217 Identities=23% Similarity=0.397 Sum_probs=180.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998877655 4567
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC------C---CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE------V---ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~------~---~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++||||++.+|. .|++||+.++.. . .+.++.++ .+.+.+..+ |++........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998886 599999987531 0 01112211 122233322 333333445568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998875 47899999999999876 99999999999999999988754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=333.83 Aligned_cols=195 Identities=21% Similarity=0.365 Sum_probs=167.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 45999999999999999999999999999999999999999999999999987654 45778999
Q ss_pred EEecCCCCCc-ccHHHHHccCCCC---CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKEV---ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~~---~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
|++|++.++. .|++||+.++.+. .+++++.++++..++.++. ......||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998876 6999999875321 2345666677766665443 23345799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEE
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVI 1187 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl 1187 (1224)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999864 47899999999999966 5677766
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=358.58 Aligned_cols=196 Identities=29% Similarity=0.497 Sum_probs=167.5
Q ss_pred eEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC----CHHHHhcccEEecCCCCCCcc-c
Q 047171 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL----QLKWLRSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 332 ~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~~lf~~-t 406 (1224)
|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++.+. +....+++++||+|++.+|+. |
T Consensus 16 ~vsl~i~---~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLP---AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 6777763 5679999999999999999999999999999999999998653 234467899999999999964 9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
++||+.++......+++ .+.++.+ |++.....+..+||||||||++|||||+.+|++||||||||+||+
T Consensus 93 v~enl~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~ 161 (352)
T PRK11144 93 VRGNLRYGMAKSMVAQF---------DKIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred HHHHHHhhhhhhhHHHH---------HHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 99999987542222233 3344444 555566777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 487 ESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 487 ~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 162 ~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 999999999987643 7899999999998866 999999999999999999999875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=341.71 Aligned_cols=202 Identities=26% Similarity=0.445 Sum_probs=170.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-t 406 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.++|++|++.+|+. |
T Consensus 18 ~l~~~sl~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 18 VVEDVSLTVN---SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 4566666653 57799999999999999999999999999999999999998777544 57789999999998875 9
Q ss_pred HHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 407 IKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 407 i~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
++||+.++.. ..+.++ ....+++.++.+ |++........+||||||||++||||++.+|++|||||||++
T Consensus 95 v~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAG 167 (241)
T ss_pred HHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987532 111111 122345666666 666667788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 484 LDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 484 lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||+.+...+.+.+.++. +|+|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 168 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 168 VDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999998764 58999999999988765 99999999999999999998864
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=330.48 Aligned_cols=197 Identities=30% Similarity=0.470 Sum_probs=169.7
Q ss_pred cEEEEEEEEECCCCCC------ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH
Q 047171 977 FIELKNVFFSYPSRPD------QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~------~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~ 1050 (1224)
.++++|++..|+.+.. ..+++||||+|++||++||||.|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 4789999999975321 36899999999999999999999999999999999999999999999999987765
Q ss_pred HHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1051 KLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
.....+++.+.++.+++.+. ........||||||||++||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence 11234567788887776542 1224456799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNG 1207 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~ 1207 (1224)
|.-+|+++++|||||+||...++.|.+.+.++. .+-|.++|||+++.++. ||||.||..|+|+|.|+-+++..+ +.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~-p~ 202 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN-PL 202 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC-CC
Confidence 999999999999999999999999999998765 37899999999999988 999999999999999999999987 56
Q ss_pred chhHHHH
Q 047171 1208 GAYYSLI 1214 (1224)
Q Consensus 1208 g~y~~l~ 1214 (1224)
..|.+..
T Consensus 203 HpYTk~L 209 (268)
T COG4608 203 HPYTKAL 209 (268)
T ss_pred CHHHHHH
Confidence 6676553
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=339.77 Aligned_cols=186 Identities=29% Similarity=0.503 Sum_probs=157.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---Hh-cccEEecCCCCCCcc-cHHHHHhcCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LR-SQMGLVNQEPILFST-SIKENILIGKP 416 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r-~~i~~v~Q~~~lf~~-ti~~ni~~g~~ 416 (1224)
++++++|+||||||||||+++|+|+++|++|+|.++|+++...+... +| +.++|++|++.+|+. |++||+.++..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 46699999999999999999999999999999999999998877643 33 679999999998875 99999987421
Q ss_pred --CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 047171 417 --GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494 (1224)
Q Consensus 417 --~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~ 494 (1224)
....++.. ..+.+.++.+ |++....+...+||||||||++||||++.+|++|||||||++||+.+...+.+
T Consensus 114 ~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (233)
T PRK11629 114 IGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186 (233)
T ss_pred hcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 11222211 1233455555 66666778889999999999999999999999999999999999999999999
Q ss_pred HHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecC
Q 047171 495 ALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 495 ~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~ 534 (1224)
.|+++. +|+|+|+|||+++.+..+|++++|++|++++.|+
T Consensus 187 ~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 187 LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 998864 4899999999999999889999999999998775
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=346.05 Aligned_cols=202 Identities=31% Similarity=0.565 Sum_probs=167.1
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC--CCCcccH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTSI 407 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--~lf~~ti 407 (1224)
++||+|.. ++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++||+|++ .+|+.|+
T Consensus 20 l~~vsl~i---~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 20 LNNINFIA---PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96 (277)
T ss_pred eeEeEEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccH
Confidence 44444443 357799999999999999999999999999999999999998777777888999999998 4778899
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
.||+.++.. ..+.++..+ .+.+.++.+ |+.......+..||||||||++|||||+.+|++|||||||++||
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD 169 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 999987532 122222211 123344444 44445566778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCeEEEEeCCcchhh-ccCEEEEEeCceEEeecChHHHHhh
Q 047171 486 AESERIVQEALDQASQ--GRTMIIIAHRLSTIR-KADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.+.+.+.++++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 170 ~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 170 PQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999988643 899999999999986 5999999999999999999998754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=342.42 Aligned_cols=196 Identities=28% Similarity=0.418 Sum_probs=158.5
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEe-cCCCCC-cccH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVS-QEPTLF-AGTI 1070 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~-Qdp~LF-~gTI 1070 (1224)
.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcH
Confidence 469999999999999999999999999999999999999999999999998755 3356788999997 667676 5799
Q ss_pred HHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 047171 1071 RQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148 (1224)
Q Consensus 1071 reNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD 1148 (1224)
+||+.+... ..+.++..+.+. .+.+.+ .+++.+++ ....||||||||++||||++.+|++|||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~--~~l~~~-gl~~~~~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLD--ELSELL-DLEELLDT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CChhHhcC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976421 223333322211 111111 12222333 345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1149 SASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1149 ~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998753 7899999999999866 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=344.83 Aligned_cols=202 Identities=34% Similarity=0.542 Sum_probs=167.0
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC--------HHHHhcccEEecCCCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ--------LKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------~~~~r~~i~~v~Q~~~ 401 (1224)
++||+|.. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+|+.++||+|++.
T Consensus 19 l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 19 LHGIDLEV---KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eccceEEE---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 44555544 256799999999999999999999999999999999999986542 3456789999999998
Q ss_pred CCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 402 LFS-TSIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 402 lf~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
+|+ .|++||+.++.. ....++.. ..+++.++.+ |++......+.+||||||||++|||||+.+|++|||
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllL 168 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEE
Confidence 886 599999987421 11222111 1234555655 666666778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999998865 48999999999999976 999999999999999999998654
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=344.63 Aligned_cols=209 Identities=29% Similarity=0.478 Sum_probs=169.4
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEECCEecCC--CCHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD--P---VKGNILLDGHKIKK--LQLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~~~~r 390 (1224)
|+++||+|.|++. +++++++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .+...+|
T Consensus 13 l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred EEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 6677777777532 3577999999999999999999999997 3 69999999999864 3455678
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPGA---SMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~---~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
+.+||++|++.+|+.|++||+.++.... ..++..+ .+++.++.+ .+.+.+.....+.+||||||||++||
T Consensus 93 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 93 KNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQE-----IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred hceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 8999999999999899999998763211 1222111 122233332 11112345678889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||++.+|++|||||||++||+++...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 9999999999999999999999999999999988778999999999999875 999999999999999999998754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=358.02 Aligned_cols=205 Identities=33% Similarity=0.535 Sum_probs=173.8
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH----hcccEEecCCCCC
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQEPIL 402 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l 402 (1224)
...++|+||..+ ++++++|+||||||||||+++|+|+++|++|+|+++|+++...+...+ ++++|||+|++.+
T Consensus 41 ~~~L~~isl~i~---~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIE---EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEc---CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 357899999975 577999999999999999999999999999999999999988876543 3589999999999
Q ss_pred Ccc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 403 FST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 403 f~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
|+. |++||+.++.. ..+.++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~-----~~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERR-----EKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 965 99999998632 11222111 1233445555 56666677788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 480 ATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+||+.+.+.+++.|.++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998864 48999999999999865 999999999999999999999765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=302.88 Aligned_cols=222 Identities=29% Similarity=0.489 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC---------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY--------- 1047 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~--------- 1047 (1224)
.++.+|+..+|.+ ..||++|||+.++|+.+.|+|.|||||||+++++.=+..|+.|.|.++|.+|+-.
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5899999999964 4599999999999999999999999999999999999999999999999877322
Q ss_pred ----CHHHHhcceEEEecCCCCCc-ccHHHHHccCCC----CCC-HHHHHHH---HHHHhHHHHHHhcccccccccCCCC
Q 047171 1048 ----NLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKE----VAT-EAEIRKA---AVLANAHEFISSTEDGYDTYCGERG 1114 (1224)
Q Consensus 1048 ----~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~----~~~-deei~~a---l~~a~l~~~I~~lp~gldt~vge~G 1114 (1224)
.++.+|+++++|+|...|.+ .|+.||+.-+ | ..+ +|.+..| +.++++.+ ....-+
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~e-----------k~~~YP 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAE-----------KADAYP 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchh-----------hhhcCc
Confidence 25568999999999999987 7999998532 2 112 3333333 33444444 333445
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
..|||||+||.||||||.-+|+++++|||||+|||+---.+.+.++.+. .|+|.++|||.+...++ +.+++.|++|+|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 6799999999999999999999999999999999999999999998876 68999999999999998 899999999999
Q ss_pred EEecChhHHhhcCCCchhHHH
Q 047171 1193 VEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1193 ve~Gt~~eLl~~~~~g~y~~l 1213 (1224)
-|+|+|+++..++......++
T Consensus 231 EE~G~P~qvf~nP~S~RlkqF 251 (256)
T COG4598 231 EEEGPPEQVFGNPQSPRLKQF 251 (256)
T ss_pred cccCChHHHhcCCCCHHHHHH
Confidence 999999999987433333333
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=343.66 Aligned_cols=203 Identities=31% Similarity=0.525 Sum_probs=169.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC-------------HHHHhcccEE
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ-------------LKWLRSQMGL 395 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-------------~~~~r~~i~~ 395 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++..++ ...+|+.++|
T Consensus 15 ~l~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 15 VLDGLNFSVA---AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred EEeeeeEEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 3555665543 57799999999999999999999999999999999999987543 2456889999
Q ss_pred ecCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccC
Q 047171 396 VNQEPILFS-TSIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRD 471 (1224)
Q Consensus 396 v~Q~~~lf~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~ 471 (1224)
|+|++.+|. .|+.||+.++.. ....++.. ..+.+.++.+ |++....+.+.+||||||||++|||||+.+
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence 999998885 699999987521 11221111 1234556665 666667788899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 472 PKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 472 ~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+++||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998864 38999999999999865 999999999999999999998754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=342.26 Aligned_cols=208 Identities=34% Similarity=0.554 Sum_probs=168.3
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCC--CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKK--LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~~~~ 389 (1224)
.|+++||+++|++. +++++++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+...+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 46666666666532 25679999999999999999999999763 69999999999874 345567
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPG--A-SM----ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
|+.++||+|++.+|+.|+.||+.++... . .. +++.++++..++.+ ++.......+.+||||||||+
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHHHHHH
Confidence 8899999999999989999999886321 1 11 12222222222211 222345677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998866 999999999999999999998653
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=346.00 Aligned_cols=207 Identities=26% Similarity=0.489 Sum_probs=170.0
Q ss_pred EEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE
Q 047171 328 IEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394 (1224)
Q Consensus 328 i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 394 (1224)
|+++||+++|++. .+|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+|
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence 5566666666421 246799999999999999999999999999999999999998777777888999
Q ss_pred EecCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|+| .++..|+.|||.++.. ..+.+++.+. +.+.++.+ |++.........||||||||++|||||+.
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 3667899999987632 2233332221 12223333 34344556678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++|||||||++||+.+.+.+.+.+.++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988753 8999999999999988999999999999999999998754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=340.27 Aligned_cols=201 Identities=30% Similarity=0.458 Sum_probs=164.9
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-c
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-t 406 (1224)
.++|++|... ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++++|++|++.+|+. |
T Consensus 15 ~l~~vs~~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 15 ILRGVSLEVP---KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred EecceeeEEC---CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 4566666553 57799999999999999999999999999999999999998777654 46789999999999976 9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
+.||+.++.......+ .+ ..++.+..+ ++++........+||||||||++|||||+++|+++||||||++||+
T Consensus 92 v~~~l~~~~~~~~~~~-~~-----~~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~ 164 (230)
T TIGR03410 92 VEENLLTGLAALPRRS-RK-----IPDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164 (230)
T ss_pred HHHHHHHHHHhcCcch-HH-----HHHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 9999987643211110 00 012222222 1234445677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 487 ESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 487 ~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 165 SIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999988653 7999999999999986 9999999999999999998873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=346.43 Aligned_cols=209 Identities=33% Similarity=0.565 Sum_probs=172.9
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCC--CCHHH
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKK--LQLKW 388 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~~~ 388 (1224)
+.|+++||+|+|++. +++++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~ 103 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE 103 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence 458899999998643 35779999999999999999999999984 89999999999864 34567
Q ss_pred HhcccEEecCCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHH
Q 047171 389 LRSQMGLVNQEPILFSTSIKENILIGKP--GA-SM----ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qr 461 (1224)
+|+.++|++|++.+|+.|++||+.++.. .. .. +++.++++..++.+ .+.+..+..+.+||||||||
T Consensus 104 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHHHHHH
Confidence 7889999999999998899999987632 11 11 12222333222221 12245677889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 462 iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
++|||||+++|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999999865
Q ss_pred h
Q 047171 541 M 541 (1224)
Q Consensus 541 ~ 541 (1224)
.
T Consensus 257 ~ 257 (272)
T PRK14236 257 S 257 (272)
T ss_pred C
Confidence 3
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=334.38 Aligned_cols=183 Identities=27% Similarity=0.474 Sum_probs=151.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCC-CCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKP-GAS 419 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~-~~~ 419 (1224)
++++++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++.+|.+ |++||+.++.. ...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 100 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK 100 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhcccccccC
Confidence 567999999999999999999999999999999999999976654 35789999999999975 99999987642 111
Q ss_pred -HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 047171 420 -METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ 498 (1224)
Q Consensus 420 -~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 498 (1224)
.++. ...+++.++.+ |++........+||||||||++||||++.+|++|||||||++||+++...+.+.|++
T Consensus 101 ~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 101 LTAED-----RQAIEVALARV--GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0100 11122333333 444445566679999999999999999999999999999999999999999999988
Q ss_pred Hc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 499 AS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 499 ~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
+. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 64 38999999999999976 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=377.88 Aligned_cols=216 Identities=23% Similarity=0.422 Sum_probs=179.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-Hhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1055 (1224)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 46999999999999999999999999999999999999999999999999987665544 4678
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCC------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEV------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
++||||++.+|. .|++||+.++... .+.++.++. +.+.+..+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998886 5999999876321 122222111 22233332 333333444567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999998864 47899999999999866 9999999999999999988764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=344.57 Aligned_cols=208 Identities=33% Similarity=0.528 Sum_probs=172.2
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~~ 389 (1224)
.|+++||+++|++. +++++++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+...+
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 58888999888642 3577999999999999999999999987 699999999999863 456678
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPG--AS---METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriai 464 (1224)
|+.++||+|++.+|+.|++||+.++... .. .+++.++++..++ ..++++.....+.+||||||||++|
T Consensus 93 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred hhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHHHHHH
Confidence 8899999999999988999999986431 11 1122222222221 1233445677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeC-----------ceEEee
Q 047171 465 ARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQS-----------GRVIES 532 (1224)
Q Consensus 465 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~-----------G~i~~~ 532 (1224)
||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++ |++++.
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEe
Confidence 99999999999999999999999999999999988778999999999999865 999999996 679999
Q ss_pred cChHHHHhh
Q 047171 533 GSHDVLMQM 541 (1224)
Q Consensus 533 g~~~~l~~~ 541 (1224)
|+.+++...
T Consensus 246 ~~~~~~~~~ 254 (269)
T PRK14259 246 NETKKIFNS 254 (269)
T ss_pred CCHHHHHhC
Confidence 999998754
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=331.39 Aligned_cols=184 Identities=38% Similarity=0.576 Sum_probs=164.4
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccH
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 407 (1224)
..++|++|+.+ ++++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|+|.+|+.|+
T Consensus 19 ~il~~~s~~i~---~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 19 FTLKDINLEVP---KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTI 82 (204)
T ss_pred ceeeeeeEEEC---CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcH
Confidence 35777777764 5679999999999999999999999999999999998 5999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 408 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
+||+.++.. ...++..++++.+++.+++..+|.|+++.+++++.+||||||||++||||++.+|+++||||||++||++
T Consensus 83 ~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 161 (204)
T cd03250 83 RENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161 (204)
T ss_pred HHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 999998743 3455667777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHH-cCCCeEEEEeCCcchhhccCEEEEEeCce
Q 047171 488 SERIVQE-ALDQA-SQGRTMIIIAHRLSTIRKADLIGVLQSGR 528 (1224)
Q Consensus 488 ~~~~i~~-~l~~~-~~~~t~i~i~H~l~~~~~ad~i~vl~~G~ 528 (1224)
+.+.+.+ .+.+. .+++|+|++||+++.+..||++++|++|+
T Consensus 162 ~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 162 VGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9888876 45554 35799999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=351.83 Aligned_cols=206 Identities=31% Similarity=0.492 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++|||+
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~ 83 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVP 83 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEe
Confidence 5666666666532 35679999999999999999999999999999999999998654 355688999999
Q ss_pred CCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFS-TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.++. .|++||+.+... ..+.++..+. +++.++.+ |++........+||||||||++|||||+.+|++
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998885 599999975211 1222222221 22334433 444455666789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999998864 58999999999999976 999999999999999999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=331.71 Aligned_cols=194 Identities=25% Similarity=0.383 Sum_probs=162.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 459999999999999999999999999999999999999999999999998875 4456889999
Q ss_pred EEecCCCCC-cccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1058 LVSQEPTLF-AGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1058 ~V~Qdp~LF-~gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
|+||++.++ ..|++||+.++.. ...+..+.++++..++ ++..+ ....+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~----~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSL-------EHLID----YPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCC-------chhhh----CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 5799999987531 1122233333333322 22223 333579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVV 1186 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~v 1186 (1224)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999864 57899999999999999997654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=334.79 Aligned_cols=189 Identities=29% Similarity=0.478 Sum_probs=157.5
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti 407 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++... ...++.++||+|++.+|. .|+
T Consensus 15 ~l~~~~~~i~---~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 15 VLDDISLHVK---KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeeeEEEEc---CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcH
Confidence 4566666653 5679999999999999999999999999999999999988654 456778999999998874 699
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.++.. ..+.+++.++++.. |++......+.+||||||||++||||++.+|++|||||||++||
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 90 RENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHc-----------CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 999987532 12233344443333 34444556678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 486 AESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
+.+.+.+.+.+.+.. +|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999998765 58999999999999975 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=337.17 Aligned_cols=192 Identities=30% Similarity=0.515 Sum_probs=159.3
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---Hh-cccEEecCCCCCCc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LR-SQMGLVNQEPILFS 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r-~~i~~v~Q~~~lf~ 404 (1224)
.++|++|... ++++++|+||||||||||+++|+|+++|++|+|.++|+++..++... +| +.++||+|++.+|+
T Consensus 20 ~l~~isl~i~---~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 20 VLKGVSLSIG---KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeeeEEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 4566666653 56799999999999999999999999999999999999998776543 33 67999999999886
Q ss_pred -ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 405 -TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 405 -~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
.|++||+.++.. ....++.. ..+.++++.+ |++......+.+||||||||++|||||+.+|++|||||||
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 169 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 599999987421 11111111 1223455555 6666677788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEE
Q 047171 482 SALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVI 530 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~ 530 (1224)
++||+++...+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 170 GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999998864 379999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=344.79 Aligned_cols=208 Identities=31% Similarity=0.540 Sum_probs=173.1
Q ss_pred cEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 394 (1224)
.|+++|++++|++ . +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 3677777777742 1 256799999999999999999999999999999999999998777778889999
Q ss_pred EecCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEP--ILFSTSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~--~lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|+| .++..|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 35567999999886321 22222211 223445554 55556677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998865 3 5899999999999888999999999999999998887653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=351.77 Aligned_cols=203 Identities=24% Similarity=0.442 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-c
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-S 406 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 406 (1224)
-.++||||..+ +++++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++|||+|++.+|.. |
T Consensus 7 ~~l~~vs~~i~---~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 7 KAVDGVNFKVR---EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eEEeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCc
Confidence 46899999874 577999999999999999999999999999999999999876 345668899999999999876 9
Q ss_pred HHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 407 IKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 407 i~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
++||+.+... ..+.++.. ..+++.++.+ |++.....+..+||||||||++|||||+.+|++|||||||++|
T Consensus 83 v~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999987421 11222211 1234555555 5555567778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 485 DAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999998864 58999999999999976 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=343.01 Aligned_cols=211 Identities=23% Similarity=0.435 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH-hcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~~v 396 (1224)
++++||+++|++. .++++++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..++||
T Consensus 6 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 5666666666432 3577999999999999999999999999999999999999988775544 4569999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHH
Q 047171 397 NQEPILFST-SIKENILIGKPGASM----------ETV--VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qria 463 (1224)
+|++.+|.. |++||+.++...... ... ........+.++++.+ |++.....++.+||||||||++
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHHHHH
Confidence 999999986 999999986321000 000 0001112344566666 6777788899999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||||++.+|++|||||||++||+.+.+.+.+.|.++. + |+|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 9999999999999999999999999999999998864 3 7899999999999966 99999999999999999988754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=345.34 Aligned_cols=212 Identities=30% Similarity=0.452 Sum_probs=169.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. .++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.++|+
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 36777777777532 35679999999999999999999999999999999999999888888888899999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 397 NQEPILFST-SIKENILIGKPGAS-METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
+|++.++.. |+.||+.++..... ............+.+.++.+ |++........+||||||||++|||||+.+|++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV--GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999877655 99999998632110 00000000011123334443 444445666779999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
|||||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999998864 37999999999999965 99999999999999999988754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=343.97 Aligned_cols=208 Identities=33% Similarity=0.564 Sum_probs=170.4
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC------------
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL------------ 384 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------------ 384 (1224)
.++++||++.|++. +++++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 46666666666532 35779999999999999999999999999999999999988642
Q ss_pred -CHHHHhcccEEecCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccc-cCCCCCCChHH
Q 047171 385 -QLKWLRSQMGLVNQEPILFST-SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQ 458 (1224)
Q Consensus 385 -~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq 458 (1224)
....+++.++||+|++.+|+. |++||+.++.. ....++. ...+.+.++.+ |+.... ...+.+|||||
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEA-----RERAVKYLAKV--GIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHc--CCChhhhhCCcccCCHHH
Confidence 134567899999999999975 99999987421 1111111 11234455555 555543 67789999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~ 536 (1224)
|||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998875 48999999999999986 9999999999999999999
Q ss_pred HHHhh
Q 047171 537 VLMQM 541 (1224)
Q Consensus 537 ~l~~~ 541 (1224)
++.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK10619 238 QLFGN 242 (257)
T ss_pred HhhhC
Confidence 98754
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=343.29 Aligned_cols=209 Identities=32% Similarity=0.512 Sum_probs=167.0
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEECCEecCCC--CHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD--P---VKGNILLDGHKIKKL--QLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~~~~~r 390 (1224)
++++||+++|++. .++++++|+||||||||||+++|+|+++ | ++|+|.++|+++... +...+|
T Consensus 6 l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 5666666666432 2567999999999999999999999954 6 599999999998643 345678
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCC--CCC-HHHHHHHHHHhcHHHHHHhcc--ccccccccCCCCCCChHHHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKP--GAS-METVVKAAQAANVHDFIMKLN--DGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~~-~~~~~~~~~~~~~~~~i~~l~--~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
+.++||+|++.+|+.|++||+.++.. ... .++..+ .+.+.++.+. .++.+..+..+.+||||||||++||
T Consensus 86 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 86 KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE-----AVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHH-----HHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 89999999999999999999987531 111 111111 1122333331 1123446778899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||++.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999987767999999999998865 999999999999999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=353.21 Aligned_cols=203 Identities=31% Similarity=0.465 Sum_probs=168.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---HhcccEEecCCC--CCC
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQMGLVNQEP--ILF 403 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r~~i~~v~Q~~--~lf 403 (1224)
.++||||... +++++||+|+||||||||+++|+|+++|++|+|.++|+++.+++... +|++|+||+|+| .++
T Consensus 36 ~l~~vsl~i~---~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 36 AVDGVTLRLY---EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred EEeeEEEEEc---CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 4556666543 46799999999999999999999999999999999999998887543 577899999998 477
Q ss_pred c-ccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 404 S-TSIKENILIGK----PGASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 404 ~-~ti~~ni~~g~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
+ .||.|||.++. +..+.++..+. +.+.++.+ |++ ......+.+|||||||||+|||||+.+|++||+
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 69999997642 12233333222 23444544 442 345778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|++.|+.+++.+.
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 999999999999999999988753 8999999999999986 999999999999999999999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=344.78 Aligned_cols=203 Identities=30% Similarity=0.473 Sum_probs=166.8
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---HhcccEEecCCCC--CC
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQMGLVNQEPI--LF 403 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r~~i~~v~Q~~~--lf 403 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|+.|+||+|++. ++
T Consensus 26 il~~isl~i~---~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 26 VLTNVSLSIE---EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred EeeCceeEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4566666543 57799999999999999999999999999999999999998776543 5778999999983 44
Q ss_pred -cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 047171 404 -STSIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478 (1224)
Q Consensus 404 -~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililD 478 (1224)
..|++||+.++.. ....++ ....+++.++.+ |++ ......+.+||||||||++|||||+.+|++||||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD 175 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD 175 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3699999975421 111111 112234556665 564 4567788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 479 EATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 479 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||++||+.+...+.+.|+++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (265)
T TIGR02769 176 EAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCC
Confidence 99999999999999999988653 8999999999999975 999999999999999999999763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=347.89 Aligned_cols=209 Identities=28% Similarity=0.474 Sum_probs=169.6
Q ss_pred ccEEEEeEEEECCCC---------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC----C-C
Q 047171 326 GEIEFKDVDFSYPTR---------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK----L-Q 385 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~---------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~-~ 385 (1224)
+.|+++|++++|++. .+++++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 467788888887542 2456999999999999999999999999999999999999852 2 3
Q ss_pred HHHHhcccEEecCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHH
Q 047171 386 LKWLRSQMGLVNQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQ 460 (1224)
Q Consensus 386 ~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~q 460 (1224)
...+|+.|+||+|+| .+|+.|++||+.++.. ....++..+. +.+.++.+ |+. ......+.+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788999999998 4677899999988642 1222222221 22333333 342 3456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 461 riaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998864 38999999999999865 99999999999999999988
Q ss_pred HHhh
Q 047171 538 LMQM 541 (1224)
Q Consensus 538 l~~~ 541 (1224)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 7653
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=343.16 Aligned_cols=207 Identities=34% Similarity=0.519 Sum_probs=167.4
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~~r 390 (1224)
|+++||+|+|++. +++++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+|
T Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence 5666666666432 2567999999999999999999999997 489999999999854 3445678
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhccccc----cccccCCCCCCChHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPG--AS-METVVKAAQAANVHDFIMKLNDGY----ETKVGQFGVQLSGGQKQRIA 463 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgGq~qria 463 (1224)
+.++||+|++.+|+.|++||+.++... .. .+...+ .+.+.++.+ |+ .......+.+||||||||++
T Consensus 85 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 85 KEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ-----RVEESLKQA--AIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred ccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHc--CCCcchHHHhccChhhCCHHHHHHHH
Confidence 899999999999999999999876321 11 111111 122233332 22 12346678899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 464 IARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 464 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999988778999999999999876 999999999999999999998754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=345.95 Aligned_cols=202 Identities=30% Similarity=0.519 Sum_probs=166.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC----CHHHHhcccEEecCCC--CCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL----QLKWLRSQMGLVNQEP--ILF 403 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~--~lf 403 (1224)
++|++|.. +++++++|+||||||||||+++|+|+++|++|+|.++|+++... +...+|+.|+|++|++ .+|
T Consensus 23 l~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 23 LFDVNLTI---EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred eeeeEEEE---cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 44455444 24679999999999999999999999999999999999998754 3466788999999998 678
Q ss_pred cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 047171 404 STSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480 (1224)
Q Consensus 404 ~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ 480 (1224)
+.|++||+.++.. ..+.++..+. +.+.++.+ |++ ........+||||||||++|||||+.+|++||||||
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 172 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8899999987532 1223332221 23445544 554 345777889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 481 TSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|++||+++.+.+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999998864 48999999999999865 999999999999999999988653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=336.68 Aligned_cols=206 Identities=32% Similarity=0.533 Sum_probs=166.9
Q ss_pred EEEEeEEEECCCC--------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCC
Q 047171 328 IEFKDVDFSYPTR--------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE 399 (1224)
Q Consensus 328 i~~~~v~f~y~~~--------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 399 (1224)
|+++||+++|++. .++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.++|++|+
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~~~q~ 79 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLFQE 79 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEEEecc
Confidence 4566666666432 25679999999999999999999999999999999999998766542 5689999999
Q ss_pred CCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 400 PILFST-SIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 400 ~~lf~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
+.+|.+ |+.||+.++. +.....+ .....+.+.++.+ |++..+......||||||||++||||++++|+++||
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNA----AQREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCH----HHHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999875 9999998753 1111000 0111223344444 455556666779999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999998864 38899999999999876 999999999999999999988754
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=344.66 Aligned_cols=202 Identities=29% Similarity=0.490 Sum_probs=168.0
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC-HHHHhcccEEecCCCC--CCccc
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ-LKWLRSQMGLVNQEPI--LFSTS 406 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~--lf~~t 406 (1224)
++||+|+. ++++++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+|||+|+|. +++.|
T Consensus 18 l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 18 LENINLVI---KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred eeeeEEEE---eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 44444443 257799999999999999999999999999999999999998765 4567889999999985 56789
Q ss_pred HHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 407 IKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 407 i~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+.|||.++... .+.++..+ .+.+.++.+ |++......+..||||||||++|||||+.+|++|||||||++|
T Consensus 95 v~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gL 167 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRK-----RVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999886421 22222221 123344454 5666667788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 485 DAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+...+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 168 D~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999998764 58999999999999988999999999999999999987653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=342.12 Aligned_cols=210 Identities=30% Similarity=0.506 Sum_probs=170.6
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCCCC--HHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKLQ--LKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~--~~~~ 389 (1224)
.|+++|+++.|++. ++++++||+|+||||||||+++|+|+++| ++|+|.++|+++...+ ...+
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 47788888887542 35779999999999999999999999985 8999999999986532 3456
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccc--cccccccCCCCCCChHHHHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~--g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
|+.++||+|++.+|+.|++||+.++.. ..+.++..+ .+.+.++.+.. .........+.+||||||||++||
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 92 RKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 788999999999999999999987532 122222111 12233333311 112345677889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999987778999999999999865 999999999999999999998754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=338.24 Aligned_cols=196 Identities=37% Similarity=0.569 Sum_probs=158.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH---HHHhcccEEecCCC--CCC
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL---KWLRSQMGLVNQEP--ILF 403 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~~i~~v~Q~~--~lf 403 (1224)
.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++++|++|++ .++
T Consensus 20 ~l~~vs~~i~---~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 20 ALDDVSFSIK---KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eecCceeEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 3555555542 467999999999999999999999999999999999999987763 56788999999999 344
Q ss_pred -cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 047171 404 -STSIKENILIGKPG---ASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478 (1224)
Q Consensus 404 -~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililD 478 (1224)
..|++||+.++... ...++..+.+ +++.++.+ |+. ......+.+||||||||++|||||+.+|++||||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 46999999864211 1111111110 12445555 453 4567788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 479 EATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 479 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
|||++||+++.+.+.+.|.++.+ |+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999988753 8999999999999975 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=315.19 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=172.3
Q ss_pred EeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcc-cHH
Q 047171 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 331 ~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++|||.- +.+++++|+|+||+||||+++.|+|+.+|.+|+|.++|+|+...+++. .|..|+||||.-.+|+. ||+
T Consensus 20 ~gvsl~v---~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVe 96 (237)
T COG0410 20 RGVSLEV---ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVE 96 (237)
T ss_pred eeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHH
Confidence 4444443 367899999999999999999999999999999999999999998766 57789999999999976 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
||+.+|......++ ......++..+-+|. +....+.++.+|||||||.+||||||+.+|++|+|||||.+|-|.-
T Consensus 97 ENL~~g~~~~~~~~----~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~i 171 (237)
T COG0410 97 ENLLLGAYARRDKE----AQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171 (237)
T ss_pred HHHhhhhhcccccc----cccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHH
Confidence 99998843222111 111113444556674 6677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 489 ERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 489 ~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+.|.+.++++++ |.|+++|.++...... |||.+||++|+|+.+|+.+||.+.
T Consensus 172 v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999998874 6799999999998865 999999999999999999999875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=337.80 Aligned_cols=193 Identities=31% Similarity=0.510 Sum_probs=160.0
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-cc
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~t 406 (1224)
..++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++.. .++.++||+|++.+|+ .|
T Consensus 18 ~il~~vs~~i~---~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~t 89 (220)
T cd03293 18 TALEDISLSVE---EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLT 89 (220)
T ss_pred EEEeceeEEEe---CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCC
Confidence 35677777653 567999999999999999999999999999999999998863 3578999999999887 59
Q ss_pred HHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 407 IKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 407 i~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
++||+.++.. ....++. ...+.+.++.+ |++........+||||||||++|||||+.+|+++||||||++|
T Consensus 90 v~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 90 VLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred HHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 9999987532 1111111 11234455555 5655667777899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEe--CceEEeecCh
Q 047171 485 DAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQ--SGRVIESGSH 535 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~--~G~i~~~g~~ 535 (1224)
|+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|+ +|+++++++.
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999998863 38999999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=344.78 Aligned_cols=204 Identities=31% Similarity=0.513 Sum_probs=170.3
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH----hcccEEecCCCCCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQEPILF 403 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf 403 (1224)
..++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++++|++|++.+|
T Consensus 38 ~il~~is~~i~---~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 38 VGVNDVSLDVR---EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred eEeeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 46899999885 567999999999999999999999999999999999999987765443 45799999999988
Q ss_pred c-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 047171 404 S-TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480 (1224)
Q Consensus 404 ~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ 480 (1224)
+ .|++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++|||||+.+|+|||||||
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5 599999987532 11111111 1223444544 555556677789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 481 TSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999998864 37999999999999865 999999999999999999999764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=345.07 Aligned_cols=210 Identities=30% Similarity=0.473 Sum_probs=170.3
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~~ 389 (1224)
-|+++|++++|++. .++++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence 48899999999743 2567999999999999999999999864 799999999999865 334567
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhcc--ccccccccCCCCCCChHHHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPG--A-SMETVVKAAQAANVHDFIMKLN--DGYETKVGQFGVQLSGGQKQRIAI 464 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l~--~g~~t~~~~~g~~LSgGq~qriai 464 (1224)
+++++|++|++.+|+.|++||+.++... . ......+. +.+.+..+. .++....+..+.+||||||||++|
T Consensus 101 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 101 RREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI-----VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 8899999999999999999999875321 1 11111111 112222221 111234567789999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 465 ARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 465 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999988777999999999998865 999999999999999999998754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=343.55 Aligned_cols=204 Identities=29% Similarity=0.477 Sum_probs=164.4
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCcEEEECCEecCCC--CHHHHhcccEEecCCCCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERF---YDP--VKGNILLDGHKIKKL--QLKWLRSQMGLVNQEPIL 402 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~~~~~--~~~~~r~~i~~v~Q~~~l 402 (1224)
++||+|.. +++++++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +...+|++++||+|++.+
T Consensus 19 l~~vs~~i---~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 19 LKGISMEI---EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeeeeEEE---eCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 44444444 25679999999999999999999997 454 589999999998754 345678899999999999
Q ss_pred CcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 403 FSTSIKENILIGKPG--A-SMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 403 f~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
|+.|++||+.++... . ..++..+ .+.+.++.+ ++.+++...+.+.+||||||||++|||||+.+|++|||
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQ-----RVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHH-----HHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988999999875321 1 1111111 122333333 11223456778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 171 DEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 171 DEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999988778999999999999865 999999999999999999998754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=333.09 Aligned_cols=196 Identities=22% Similarity=0.327 Sum_probs=163.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5999999999963 3599999999999999999999999999999999999999999999999988652 346689
Q ss_pred EEEecCCCCCcc-cHHHHHccCCC--CCC-HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKE--VAT-EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~--~~~-deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+|++|++.+|.+ |++||+.++.. ... ++.+.++++..++ +..++ ....+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~----~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-------AGYED----TLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-------hhhcc----CChhhCCHHHHHHHHHHHHHh
Confidence 999999998886 99999976421 111 2233334433332 22233 344679999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeC
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKN 1189 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~ 1189 (1224)
++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 57899999999999966 999999874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=342.51 Aligned_cols=202 Identities=26% Similarity=0.425 Sum_probs=167.0
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|.. +++++++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|++|++.++.+ |+
T Consensus 17 il~~is~~i---~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 17 ILNDLSLSL---PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEeeeeeEE---cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 455555554 25679999999999999999999999999999999999999888877888899999999988876 99
Q ss_pred HHHHhcCCCCC----C--HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 408 KENILIGKPGA----S--METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 408 ~~ni~~g~~~~----~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
.||+.++.... . .++. ...+.+.++.+ |++......+..||||||||++||||++.+|++|||||||
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred HHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999863210 0 0110 11122333333 4444566778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 482 SALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
++||+++...+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999998864 58999999999999875 99999999999999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=375.82 Aligned_cols=212 Identities=25% Similarity=0.421 Sum_probs=176.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-HHHhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~-~~lR~~ 1055 (1224)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 459999999999999999999999999999999999999999999999999876543 456889
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC----C-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE----V-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~----~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
++||||++.+|. .|++||+.++.. . .+..+..+ .+.+++..+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998887 499999987531 1 12222211 122333333 3333334556689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~ 1198 (1224)
||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999998875 47899999999999866 999999999999977653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=343.32 Aligned_cols=207 Identities=31% Similarity=0.458 Sum_probs=166.6
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhcccEE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMGL 395 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i~~ 395 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++|+|
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 4556666666432 256799999999999999999999999999999999999985 3344567889999
Q ss_pred ecCCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccC
Q 047171 396 VNQEPI--LFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRD 471 (1224)
Q Consensus 396 v~Q~~~--lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~ 471 (1224)
|+|++. ++..|+.+|+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 999985 567799999987521 122222211 122334443 344444567789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 472 PKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 472 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|++|||||||++||+.+...+.+.|.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998864 58999999999999965 999999999999999999888653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=350.43 Aligned_cols=202 Identities=23% Similarity=0.442 Sum_probs=170.8
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|.. ++++++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++||++|++.+|+. |+
T Consensus 17 ~l~~is~~i---~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 17 ALDEVSFEA---QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEeEEEE---eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcH
Confidence 455555554 3577999999999999999999999999999999999999876 345678899999999999876 99
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
.||+.+... ....++..+ .+++.++.+ |++.....+..+||||||||++|||||+.+|++|||||||++||
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD 165 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999986321 112222211 234456666 67777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 486 AESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.+.+++.++++.+++|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 166 ~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 166 PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999988778999999999999876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=340.68 Aligned_cols=201 Identities=30% Similarity=0.536 Sum_probs=165.6
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC------CCCHHHHhcccEEecCCCCCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK------KLQLKWLRSQMGLVNQEPILF 403 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~------~~~~~~~r~~i~~v~Q~~~lf 403 (1224)
++|++|.. .++++++|+||||||||||+++|+|+++|++|+|.++|.++. ..+....|++|+|++|++.+|
T Consensus 18 l~~vsl~i---~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 18 LFDITLDC---PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred EeeeeeEE---cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 44444443 256799999999999999999999999999999999999873 123456788999999999998
Q ss_pred cc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 404 ST-SIKENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 404 ~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
.. |+.||+.++.. ....++. ...+.++++.+ |++........+||||||||++||||++.+|++|||||
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 167 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSKDQA-----LARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 75 99999975311 1122221 12234566666 67767788889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 480 ATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||++||+++...+.+.++++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999998865 48999999999999975 99999999999999999887643
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=343.78 Aligned_cols=209 Identities=32% Similarity=0.471 Sum_probs=172.8
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHH
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKW 388 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~ 388 (1224)
..|+++||+|+|++. .++++++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+...
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 358889999988643 3577999999999999999999999997 589999999999864 34556
Q ss_pred HhcccEEecCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHH
Q 047171 389 LRSQMGLVNQEPILFSTSIKENILIGKPG--A-SME----TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qr 461 (1224)
+|+.|+||+|++.+|+.|++||+.++... . ..+ ++.++++..++.+ +.++..+..+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHHHHH
Confidence 78899999999999989999999886321 1 111 1222222222211 22345678889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 462 iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999999875
Q ss_pred h
Q 047171 541 M 541 (1224)
Q Consensus 541 ~ 541 (1224)
.
T Consensus 252 ~ 252 (267)
T PRK14237 252 N 252 (267)
T ss_pred C
Confidence 3
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=376.13 Aligned_cols=213 Identities=24% Similarity=0.381 Sum_probs=177.9
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-HHHhcceEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSCIAL 1058 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~-~~lR~~i~~ 1058 (1224)
++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876654 346788999
Q ss_pred EecCCCCCc-ccHHHHHccCCC---C--CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1059 VSQEPTLFA-GTIRQNIVYGKE---V--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1059 V~Qdp~LF~-gTIreNl~~~~~---~--~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
|||++.+|. .|++||+.++.. . .+.++.++ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998765 699999987531 1 12222222 122333333 4444455566789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998865 57899999999999865 9999999999999999988763
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=339.71 Aligned_cols=194 Identities=30% Similarity=0.465 Sum_probs=163.2
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. .++++++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|+
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v 86 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLM 86 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEE
Confidence 47888888888643 256799999999999999999999999999999999998763 457789999
Q ss_pred cCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 397 NQEPILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 397 ~Q~~~lf~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+|++.+|+ .|++||+.++......+++ .+.++.+ |++......+.+||||||||++|||||+.+|++|
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAA---------LQALAAV--GLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHH---------HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999887 5999999986422112222 3344444 5555567778899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChH
Q 047171 476 LLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~ 536 (1224)
||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999998763 47999999999999865 9999999999999988765
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=336.76 Aligned_cols=200 Identities=28% Similarity=0.424 Sum_probs=167.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||++.|++. +++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++
T Consensus 8 i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred EEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 5666666666432 356799999999999999999999999999999999999998888877888999999
Q ss_pred CCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+.|++||+.++.. ....+ ...+.+.++.+ |+. +.....+.+||||||||++|||||+.+|++
T Consensus 88 q~~~l~~~tv~enl~~~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 88 QTPTLFGDTVYDNLIFPWQIRNQQPD-------PAIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred cccccccccHHHHHHhHHhhcCCChH-------HHHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998999999987421 01111 01223455665 553 456788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEe-CceEEeecChH
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQ-SGRVIESGSHD 536 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~-~G~i~~~g~~~ 536 (1224)
+||||||++||+.+...+.+.+.++. .|+|+|++||+++.+..||+|++|+ ++..+++|+|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999998864 3889999999999998899999995 67778889886
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=341.58 Aligned_cols=207 Identities=29% Similarity=0.500 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~~r 390 (1224)
|+++||+++|++. +++++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+|
T Consensus 11 l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 90 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90 (264)
T ss_pred EEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHh
Confidence 7778888877532 3567999999999999999999999986 489999999999853 3556778
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPGA--S---METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
++|+||+|++.+|+.|+.||+.++.... . .+++.++++.+++.+++ +...+..+.+||||||||++||
T Consensus 91 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 91 RRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred hhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHHHHHH
Confidence 8999999999999889999998864211 1 12233333444433322 2235677889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEe---------CceEEeecCh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQ---------SGRVIESGSH 535 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~---------~G~i~~~g~~ 535 (1224)
|||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++.|++
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 9999999999999999999999999999999988777999999999999876 99999998 8999999999
Q ss_pred HHHHhh
Q 047171 536 DVLMQM 541 (1224)
Q Consensus 536 ~~l~~~ 541 (1224)
+|+.+.
T Consensus 244 ~~~~~~ 249 (264)
T PRK14243 244 EKIFNS 249 (264)
T ss_pred HHHHhC
Confidence 999764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=352.21 Aligned_cols=207 Identities=29% Similarity=0.485 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
-|+++||+++|++. ++|+++||+||||||||||+++|+|+++|++|+|.++|+++...+ ...++.||||
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~v 119 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVV 119 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEEE
Confidence 48999999999753 367799999999999999999999999999999999999987654 4678899999
Q ss_pred cCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEPILFS-TSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~~lf~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
||++.++. .|+.||+.+... ..+.++..+. ++++++.+ |++........+||||||||++|||||+.+|+
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99998874 599999985321 1222222221 22334433 44444566677999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|||||||++||+.+...+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998864 58999999999999976 999999999999999999998754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=334.25 Aligned_cols=191 Identities=37% Similarity=0.597 Sum_probs=160.9
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC--CCcc
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI--LFST 405 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ 405 (1224)
-.++|++|..+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|+|++|++. +++.
T Consensus 15 ~il~~vs~~i~---~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 15 PALDDISLTIK---KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeecceEEEEc---CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 35788888874 567999999999999999999999999999999999999988777778889999999983 5678
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 406 SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 406 ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
|++||+.++... .+.++..+ .+.+.++.+ |++.....+..+||||||||++|||||+.+|++|||||||++
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 164 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999875321 12221111 223445555 555566778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCce
Q 047171 484 LDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 484 lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~ 528 (1224)
||+++...+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+
T Consensus 165 LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999998865 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=346.34 Aligned_cols=192 Identities=30% Similarity=0.522 Sum_probs=162.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC----CHHHHhcccEEecCCC--CCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL----QLKWLRSQMGLVNQEP--ILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~--~lf~~ti~~ni~~g~ 415 (1224)
+|++++|+||||||||||+++|+|+++|++|+|.++|+++... +....++.|+|++|+| .+|+.|+.|||.++.
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 5679999999999999999999999999999999999998653 2456778899999998 577889999998753
Q ss_pred C--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 047171 416 P--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492 (1224)
Q Consensus 416 ~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i 492 (1224)
. ..+.++..+ .+.++++.+ |++ ........+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 112 ~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 112 KNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred HHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 2 122222211 233455555 665 356778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 493 QEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 493 ~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 185 ~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 185 MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99998874 58999999999999865 99999999999999999998864
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=334.46 Aligned_cols=193 Identities=29% Similarity=0.502 Sum_probs=159.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti 407 (1224)
.++|++|... ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++|++|++.+|. .|+
T Consensus 15 ~l~~is~~i~---~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 15 ALDDLNLDIA---DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeceEEEEc---CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhhccCCCH
Confidence 4566666653 5779999999999999999999999999999999999998765543 467999999999886 599
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||||++.+|+++||||||++||
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 90 YDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999987532 112222211 123344444 55556677788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeec
Q 047171 486 AESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESG 533 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g 533 (1224)
+++.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999998864 38999999999999876 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=308.47 Aligned_cols=204 Identities=28% Similarity=0.468 Sum_probs=170.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++||||.- ..|+++||.|||||||||+++.|..++.|++|.|++||.|.... +...|++||+++-+.-|+.. |+
T Consensus 17 AvrdVSF~a---e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 17 AVRDVSFEA---EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred hhhheeEEe---ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcceecCCcChhhhhhH
Confidence 356777764 35779999999999999999999999999999999999998764 56678899999987777755 99
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 408 KENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 408 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
+|||.|-.. ...+...--++...+..+.| |++.....+..++|-|+||||+|||||++||++++||||||+||..
T Consensus 93 rEnl~~Fa~---L~~l~~~~~kari~~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 93 RENLKYFAR---LNGLSRKEIKARIAELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167 (245)
T ss_pred HHHHHHHHH---HhhhhhhHHHHHHHHHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHH
Confidence 999997422 11111111123334445555 5666677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 488 SERIVQEALDQASQ-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 488 ~~~~i~~~l~~~~~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.+++.+.+++. |+++|+.||.+++++. ||+++++.+|+++..|+.+++.++
T Consensus 168 ~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 168 TRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999988765 9999999999999985 999999999999999999998765
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=344.84 Aligned_cols=208 Identities=31% Similarity=0.504 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEECCEecCCCCHHHHhc
Q 047171 327 EIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVK---GNILLDGHKIKKLQLKWLRS 391 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~~~~~~~~~~r~ 391 (1224)
.|+++|++|+|++. +++++++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 36677777777531 2466999999999999999999999999998 89999999998777777888
Q ss_pred ccEEecCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHH
Q 047171 392 QMGLVNQEPI--LFSTSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA 467 (1224)
Q Consensus 392 ~i~~v~Q~~~--lf~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARa 467 (1224)
+||||+|+|. +++.|+.|||.++.+. .+.++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHH
Confidence 9999999983 5678999999886432 22322211 123334444 55555677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 468 LIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 468 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+|++|||||||++||+.+...+.+.|.++. .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998864 38999999999999988999999999999999999988653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=339.26 Aligned_cols=208 Identities=32% Similarity=0.550 Sum_probs=169.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEecCCC--CHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPV-----KGNILLDGHKIKKL--QLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~~~ 389 (1224)
.|+++||+|+|++. .++++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +...+
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 36667777776532 256799999999999999999999999997 69999999998643 45577
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCC--CC-HHHH----HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPG--AS-METV----VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~~-~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
|+.++||+|++.+|+.|++||+.++... .. .++. .++.+..++. +++.+.....+.+||||||||+
T Consensus 84 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~qrv 156 (251)
T PRK14249 84 RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-------DEVKDNLHKSGLALSGGQQQRL 156 (251)
T ss_pred hceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-------hhhhhHhhCCcccCCHHHHHHH
Confidence 8899999999999989999999886321 11 1112 2222222222 1223446778899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999887678999999999999876 899999999999999999998654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=339.77 Aligned_cols=202 Identities=28% Similarity=0.433 Sum_probs=167.0
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCC-CcccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL-FSTSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l-f~~ti 407 (1224)
.++|++|+.+ ++++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|++|++.+ +..|+
T Consensus 17 il~~is~~i~---~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 17 LLDDVSLTLR---PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeEEEc---CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 3555555542 5679999999999999999999999999999999999999888877778899999999987 56799
Q ss_pred HHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeC
Q 047171 408 KENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI------RDPKILLLDE 479 (1224)
Q Consensus 408 ~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~------~~~~ililDE 479 (1224)
+||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||||+ .+|++|||||
T Consensus 94 ~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDE 166 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDD-----ALVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE 166 (258)
T ss_pred HHHHHhhhcccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC
Confidence 99998864211 111111 1123344444 5555567778899999999999999999 5999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 480 ATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||++||+.+...+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 167 PTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 999999999999999998864 58999999999999875 99999999999999999988764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=342.42 Aligned_cols=208 Identities=29% Similarity=0.460 Sum_probs=171.7
Q ss_pred cEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 394 (1224)
.|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 36777777777532 256799999999999999999999999999999999999998888878889999
Q ss_pred EecCCCC-C-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEPI-L-FSTSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~~-l-f~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|+|. + +..|+++|+.++... ...++..+ .+.+.++.+ |+.......+.+||||||||++||||++.
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999985 4 456899999886431 12222211 122333433 44444566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++|||||||++||+.+.+.+.+.++++. .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998864 37899999999999988999999999999999999988653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=339.01 Aligned_cols=211 Identities=28% Similarity=0.512 Sum_probs=169.2
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEECCEecCCC--CHHH
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD--P---VKGNILLDGHKIKKL--QLKW 388 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~~~~ 388 (1224)
+.|+++|++++|++. +++++++|+|+||||||||+++|+|+++ | ++|+|.++|+++... +...
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 457777777777532 3577999999999999999999999986 4 699999999998643 3456
Q ss_pred HhcccEEecCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhcc--ccccccccCCCCCCChHHHHHH
Q 047171 389 LRSQMGLVNQEPILFS-TSIKENILIGKPG---ASMETVVKAAQAANVHDFIMKLN--DGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~--~g~~t~~~~~g~~LSgGq~qri 462 (1224)
+|+.++||+|++.+|. .|++||+.++... .+.++..+ .+.+.++.+. ..++...+..+.+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE-----IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 7889999999999887 5999999875311 11111111 1122333331 0112234567889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999999865 999999999999999999998754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.74 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCC--CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKK--LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~~~~ 389 (1224)
-++++||+|+|++. ++++++||+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 48889999988643 3567999999999999999999999987 699999999999853 345667
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHHHH
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
+++++|++|++.+|..|++||+.++.. ....++..+ ..+.+.+..+ .+++.......+.+||||||||++||
T Consensus 104 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 104 RTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred hhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHH
Confidence 889999999999998999999987532 111111111 1111222222 12334456778899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999988778999999999999875 999999999999999999998754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=339.79 Aligned_cols=209 Identities=29% Similarity=0.497 Sum_probs=168.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCCC--CHHHHh
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKL--QLKWLR 390 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~~~~r 390 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+.+| ++|+|.++|+++... +....+
T Consensus 7 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 5555555555422 35779999999999999999999999763 489999999999765 456678
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKPG--A-SMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
+.++|++|++.+|+.|++||+.++... . ...+..+ .+.+.++.+ .+++.+..++.+.+||||||||++||
T Consensus 87 ~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDT-----IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred ceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHH-----HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 889999999999989999999986421 1 1111111 112222222 22334456788899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 9999999999999999999999999999999988777999999999999975 999999999999999999998754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=344.72 Aligned_cols=193 Identities=30% Similarity=0.459 Sum_probs=161.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC-HHHHhcccEEecCCCC--CCcccHHHHHhcCCCC-
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ-LKWLRSQMGLVNQEPI--LFSTSIKENILIGKPG- 417 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~--lf~~ti~~ni~~g~~~- 417 (1224)
++++++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+ ...+|+.+|||+|+|. +|..|+.||+.|+...
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 46699999999999999999999999999999999999987653 3557889999999984 6777999999986321
Q ss_pred -CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 047171 418 -ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496 (1224)
Q Consensus 418 -~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l 496 (1224)
.+..+..+ .+++.++.+ |+.........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 115 ~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 115 GIPPEEIRE-----RVDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred CCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 12222111 123334443 5555566777899999999999999999999999999999999999999999999
Q ss_pred HHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 497 DQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 497 ~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.++. .|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 188 ~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 188 KELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 8874 38999999999999988999999999999999999998754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=342.93 Aligned_cols=203 Identities=29% Similarity=0.530 Sum_probs=166.1
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEecCCCC--HHHHhcccEEecCCCC
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-----PVKGNILLDGHKIKKLQ--LKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~~--~~~~r~~i~~v~Q~~~ 401 (1224)
.++|++|+.. ++++++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ...+|+.++||+|++.
T Consensus 20 ~l~~is~~i~---~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 20 ILFDINLDIY---KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 4666666653 577999999999999999999999986 47999999999986543 3456889999999999
Q ss_pred CCcccHHHHHhcCCC--CC--CHHHHHHHHHHhcHHHHHHhccccc----cccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 402 LFSTSIKENILIGKP--GA--SMETVVKAAQAANVHDFIMKLNDGY----ETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 402 lf~~ti~~ni~~g~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+|+.|+.||+.++.. +. ..++..+ .+.+.++.+ |+ .+.++..+.+||||||||++||||++++|+
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 169 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPT 169 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 998999999987621 11 1111111 122333433 33 234567788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 170 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 170 MLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999988778999999999999875 999999999999999999998754
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=340.95 Aligned_cols=210 Identities=29% Similarity=0.496 Sum_probs=174.2
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCEecCCCC-HHHHh
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDP-----VKGNILLDGHKIKKLQ-LKWLR 390 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~-~~~~r 390 (1224)
.++++||+++|++. +++++++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ...+|
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 47889999998643 35779999999999999999999999986 7999999999987653 45678
Q ss_pred cccEEecCCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhc--cccccccccCCCCCCChHHHHHHHHH
Q 047171 391 SQMGLVNQEPILFSTSIKENILIGKP---GASMETVVKAAQAANVHDFIMKL--NDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 391 ~~i~~v~Q~~~lf~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
++++|++|++.+|+.|++||+.++.. ..+.++..+.+ .+.++.+ +..+++...+.+.+||||||||++||
T Consensus 101 ~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 101 RRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 89999999999999999999987632 12333332211 2233333 22223456778899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+.+|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999887667899999999999876 999999999999999999999764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1224 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-94 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-94 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-81 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-81 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 9e-81 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-80 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-71 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-70 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-68 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-63 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-66 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-62 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-57 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-50 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-57 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-50 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-57 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-50 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-57 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-49 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-57 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-49 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-56 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-48 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-56 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-48 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-55 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-55 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-53 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-51 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-50 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-49 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-48 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-48 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-24 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-23 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-23 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-22 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-20 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-20 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-20 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-20 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 9e-20 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-20 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-20 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-19 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-19 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-19 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-19 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-19 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-19 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-19 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 9e-19 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-18 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-18 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-18 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-18 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-18 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 9e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-17 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-16 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-16 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-15 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-13 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-14 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-13 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-13 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-13 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-13 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-13 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-13 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-13 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-13 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-12 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-12 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-11 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-11 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-10 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-09 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-09 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-09 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-07 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-08 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 9e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 5e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 6e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 8e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-05 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 5e-05 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 9e-05 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 1e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 2e-04 | ||
| 3zqj_A | 993 | Mycobacterium Tuberculosis Uvra Length = 993 | 3e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra Length = 993 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1224 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-166 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-150 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-164 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-146 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-156 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-144 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-152 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-147 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-137 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-137 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-134 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-126 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-128 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-123 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-123 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-112 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-120 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-115 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 5e-99 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 8e-98 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-60 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-55 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-47 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-39 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-44 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-38 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-44 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-36 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-40 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-31 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-39 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 7e-35 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-38 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-33 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-37 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-32 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 8e-36 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-34 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-33 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-32 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-32 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-31 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-31 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 7e-25 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-31 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-24 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-26 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-22 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-30 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-25 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-25 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-30 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-27 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-30 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-23 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-30 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-26 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-29 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-27 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-27 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-26 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-26 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-25 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-26 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-20 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-24 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-19 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-22 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 9e-20 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-15 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-18 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-12 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 6e-16 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 9e-11 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-16 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-11 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 7e-16 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-14 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-07 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-13 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-10 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-09 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 7e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 7e-09 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 7e-09 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-08 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 5e-06 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 3e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1497 bits (3878), Expect = 0.0
Identities = 421/1264 (33%), Positives = 684/1264 (54%), Gaps = 76/1264 (6%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSDISISIEAVDKVPEK- 65
+FRYA D+L +L GT+ +I G+ PL M I + + + +K
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 66 -------------------------------GMCWTRTAERQASRIRMEYLKSVLRQEVG 94
W A RQ +IR ++ +++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 95 FFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALA 154
+FD ++ T +T D I + + +KI + +F G ++ F W+L L
Sbjct: 158 WFDVHDVG----ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLV 213
Query: 155 ALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRF 214
L S + + ++ K+L + AY AG +AE+ +++IRTV +F G+ + L+R+
Sbjct: 214 ILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273
Query: 215 SLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGIC 273
+ L + LGIK+ +T + +G+ + Y ++A W G+ LV + G V
Sbjct: 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFS 333
Query: 274 TILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDV 333
++G + A PN+ + A AA +F++ID P I+S + G ++G +EFK++
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 334 DFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380
FSYP+R + T+ LVG+SG GKST + L++R YDP+ G + +DG
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 381 IKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN 440
I+ + +++LR +G+V+QEP+LF+T+I ENI G+ +M+ + KA + AN +DFIMKL
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500
++T VG+ G QLSGGQKQRIAIARAL+R+PKILLLDEATSALD ESE +VQ ALD+A
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 501 QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAM 560
+GRT I+IAHRLST+R AD+I G ++E G+HD LM+ G Y K+V Q +
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK----GIYFKLVMTQTAGN 629
Query: 561 RNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPIYPLSPTFSISMTGSFQMHS 620
E+ + + + + S + + I S+ +
Sbjct: 630 EIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRST---------------RKSICGPHDQ 674
Query: 621 VENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSA 680
+ K D P+S R+L++++ EW ++G + +G + P+++ VV
Sbjct: 675 DRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGV 734
Query: 681 YFIKDD-SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFT 739
+ + + L+ L+FL L ++ I +Q + F GE L +R+R + + +
Sbjct: 735 FTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLR 794
Query: 740 FEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVA 799
++ WFD +NT+ A+ RLAN+A V+ R++++ Q + +SL+ W++
Sbjct: 795 QDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLT 854
Query: 800 IVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILD 859
++++A+ P+ ++ + K KK ++A+EA N RT+ + + + +
Sbjct: 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET 914
Query: 860 LFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAF 919
++ ++++ P + ++K++ GI +Q + S F + ++ Q L++ + + F
Sbjct: 915 MYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVF 974
Query: 920 FLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIE 979
++ + S D AK + + I I+++ EID + +G ++
Sbjct: 975 SAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQG--LKPNMLEGNVQ 1032
Query: 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
V F+YP+RP + +GL+L+++ G+T+ALVG SG GKST++ L+ERFYDP +GSV +
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 1040 DERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHE 1097
D + IK N++ LR+ + +VSQEP LF +I +NI YG V + EI +AA AN H+
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
FI S D Y+T G++G QLSGGQKQRIA+ARA+++ P ILLLDEATSALD+ SE +VQE
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AL+K GRTC+V+AHRLSTIQ AD IVVI+NGKV E GT L + G Y+S++ +Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL--LAQKGIYFSMVSVQ 1270
Query: 1218 ASRS 1221
A
Sbjct: 1271 AGAK 1274
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 647 bits (1672), Expect = 0.0
Identities = 206/621 (33%), Positives = 315/621 (50%), Gaps = 24/621 (3%)
Query: 620 SVENQNDKNFHDNSHSPSSLLRLLR-MSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVV 678
S + K S+L + R ++ L+G L + G P G +
Sbjct: 16 SKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMT 75
Query: 679 SAY-----------------FIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIM 721
++ +KL+ E Y + G+ LI IQ + +
Sbjct: 76 DSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLA 135
Query: 722 GEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVF 781
+ ++R+K I EIGWFD + + RL ++ + I D++ + Q
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193
Query: 782 FSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEA 841
+ + + W++ +V++A+ P+ + ++ S ++K + ++ +A E
Sbjct: 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEV 253
Query: 842 TTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYA 901
RT+ AF Q + L+ + ++ K+ IK++ + I + ++ L AS L FWY
Sbjct: 254 LAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYG 313
Query: 902 GRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDP 961
++ S Q+ FF ++ ++ A A A +F I+D K ID
Sbjct: 314 TSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDS 373
Query: 962 EDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST 1021
S + +G +E KN+ FSYPSR + I KGL LK+++G+TVALVG SG GKST
Sbjct: 374 FSK--SGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431
Query: 1022 IIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA 1081
+ L++R YDP G V +D ++I++ N+R LR I +VSQEP LFA TI +NI YG+E
Sbjct: 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491
Query: 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
T EI KA ANA++FI +DT GERG QLSGGQKQRIA+ARA+++NP ILLLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 1142 EATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
EATSALD+ SE +VQ AL+K GRT +V+AHRLST++ AD I G +VEQG L
Sbjct: 552 EATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
Query: 1202 LSMGNGGAYYSLIKMQASRSP 1222
M G Y+ L+ Q + +
Sbjct: 612 --MREKGIYFKLVMTQTAGNE 630
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 627 bits (1618), Expect = 0.0
Identities = 211/596 (35%), Positives = 319/596 (53%), Gaps = 39/596 (6%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD--------------- 51
+ + + + G +I +G + P I S V+
Sbjct: 696 ILKLN-STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLL 754
Query: 52 -ISISIEAVDKVPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVT 110
+ + I + +G + + E R+R KS+LRQ+V +FD+ +++ + T
Sbjct: 755 FLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA--LTT 812
Query: 111 NITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFG 170
+ +DA ++ A ++ ++ + I+++ + W+L L L + + G+V
Sbjct: 813 RLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEM 872
Query: 171 KVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230
K+L + K E +G IA +AI + RTV S E + ++ +L+ +K+
Sbjct: 873 KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932
Query: 231 TKGLLLG-SMGMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLS 289
G+ + M Y ++A G+ LVT++ V + + G + +
Sbjct: 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992
Query: 290 FISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP----- 344
++AT +A+ I +I++ P I+S G L G ++F V F+YPTRP P
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGL 1052
Query: 345 --------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396
T+ LVGSSG GKSTV+ LLERFYDP+ G++ LDG +IK+L ++WLR+Q+G+V
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 397 NQEPILFSTSIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQL 454
+QEPILF SI ENI G S E +V+AA+ AN+H FI L D Y T+VG G QL
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST 514
SGGQKQRIAIARAL+R P ILLLDEATSALD ESE++VQEALD+A +GRT I+IAHRLST
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232
Query: 515 IRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYN 570
I+ ADLI V+Q+G+V E G+H L+ G Y MV +Q A R+ V ++
Sbjct: 1233 IQNADLIVVIQNGKVKEHGTHQQLLAQK----GIYFSMVSVQAGAKRSYVHHHHHH 1284
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 505 bits (1302), Expect = e-166
Identities = 176/584 (30%), Positives = 301/584 (51%), Gaps = 20/584 (3%)
Query: 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYC 697
+ RL A ++ + + A L ++ F K D +
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMP 68
Query: 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICA 757
L+ +GL L I + I Y + + +V +R ++ + + +FD+ ++ + +
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLS 126
Query: 758 RLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRS 817
R+ ++ V S + + +++ S + + +W+++I+++ + P+ S
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 818 VLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877
+S+S+ + + + + A + H+ + F Q+ F + + + +K
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246
Query: 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLF---QAFFLLMSTGKNIADAGS 934
S I Q + + ++ + A ++ + + LM K++ +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNV-- 304
Query: 935 MTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQM 994
+ +G +A +T+F ILD + E D E + + G +E +NV F+YP R +
Sbjct: 305 -NAQFQRGMAACQTLFAILDSEQEKD-EGKRVIDRA----TGDLEFRNVTFTYPGR-EVP 357
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
+ + LKI AGKTVALVG+SGSGKSTI LI RFYD G +++D +++ Y L LR+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 1055 CIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
+ALVSQ LF T+ NI Y + E + +I +AA +A A +FI+ ++G DT GE
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
GV LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+ SE +Q AL+++ RT +V+AH
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
RLSTI++AD IVV+++G +VE+GT S LL+ G Y L KMQ
Sbjct: 538 RLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 462 bits (1191), Expect = e-150
Identities = 154/504 (30%), Positives = 259/504 (51%), Gaps = 31/504 (6%)
Query: 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129
+ + + +R ++ V FFD Q++ +++ IT D+ + + + +
Sbjct: 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTG----TLLSRITYDSEQVASSSSGALIT 145
Query: 130 CLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGG 189
+ S IG ++ F SW+L++ + + + + V K + + ++
Sbjct: 146 VVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTT 205
Query: 190 IAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMG-MTYGAWAF 248
AEQ + + V F G+ KRF K G+K + + + A AF
Sbjct: 206 SAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAF 265
Query: 249 QSWVGSVLVTERG-EKGGLV-FVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306
+ S G + + + ++ + ++ + + A +F ++D
Sbjct: 266 VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ--FQRGMAACQTLFAILD 323
Query: 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSG 353
DE + + G++EF++V F+YP R + P T+ LVG SG
Sbjct: 324 SEQEK---DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSG 379
Query: 354 SGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413
SGKST+ SL+ RFYD +G+IL+DGH +++ L LR+Q+ LV+Q LF+ ++ NI
Sbjct: 380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY 439
Query: 414 GKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472
+ S E + +AA+ A DFI K+++G +T +G+ GV LSGGQ+QRIAIARAL+RD
Sbjct: 440 ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499
Query: 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIES 532
IL+LDEATSALD ESER +Q ALD+ + RT ++IAHRLSTI +AD I V++ G ++E
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559
Query: 533 GSHDVLMQMNNGEGGAYSKMVQLQ 556
G+H L+ + G Y+++ ++Q
Sbjct: 560 GTHSELLA----QHGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 499 bits (1286), Expect = e-164
Identities = 166/586 (28%), Positives = 293/586 (50%), Gaps = 24/586 (4%)
Query: 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYC 697
+ RL + ++ + + A L ++ F +S R+
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILP 68
Query: 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICA 757
+ LGL F+ ++ Y + + ++V ++R ++ + +FDQ ++ + +
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLS 126
Query: 758 RLANEAHLVRSFIADRMSLLIQVFFS--ASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYS 815
R+ ++ V + + +++ S L +W++++V+I V P+
Sbjct: 127 RITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN--SWQLSLVLIVVAPVVAFAISF 184
Query: 816 RSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQ 875
S + +S + + + A + H+ + ++ Q+ F + +++++K
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244
Query: 876 SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLF---QAFFLLMSTGKNIADA 932
I Q + + ++ + A + ++P A F LM K +
Sbjct: 245 VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSV 304
Query: 933 GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
TS+ +G +A +T+F ++D ++E D +A E G +++K+V F+Y + +
Sbjct: 305 ---TSEFQRGMAACQTLFGLMDLETERDNGKYEA-----ERVNGEVDVKDVTFTYQGK-E 355
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
+ ++ I GKTVALVG+SGSGKSTI L RFYD SGS+ +D +++ Y L L
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCG 1111
R ALVSQ LF TI NI Y E T +I +AA A+A EFI + G DT G
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 1112 ERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVV 1171
E G LSGGQ+QR+A+ARA+L++ +L+LDEATSALD+ SE +Q AL+++ +T +V+
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535
Query: 1172 AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
AHRLSTI++AD I+V+ G+++E+G + LL+ GAY L ++Q
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLA--QDGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 452 bits (1164), Expect = e-146
Identities = 145/504 (28%), Positives = 246/504 (48%), Gaps = 31/504 (6%)
Query: 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129
+ + ++R + V FFD +++ +++ IT D+ + A + + +
Sbjct: 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTG----GLLSRITYDSEQVAGATSRALVS 145
Query: 130 CLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGG 189
+ S IG + + F SW+L+L + + + K + + + A
Sbjct: 146 IVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTS 205
Query: 190 IAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGM-TYGAWAF 248
AEQ + + V S+ G+ KRF + +K + + + M A
Sbjct: 206 SAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA 265
Query: 249 QSWVGSVLVTERG-EKGGLV-FVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306
++ SV G + + ++ + ++++ + + A +F ++D
Sbjct: 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE--FQRGMAACQTLFGLMD 323
Query: 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSG 353
D + GE++ KDV F+Y + + P T+ LVG SG
Sbjct: 324 LETER---DNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSG 379
Query: 354 SGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413
SGKST+ +L RFYD G+I LDGH ++ +L LR LV+Q LF+ +I NI
Sbjct: 380 SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY 439
Query: 414 G-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472
+ + E + +AA+ A+ +FI + G +T +G+ G LSGGQ+QR+AIARAL+RD
Sbjct: 440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499
Query: 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIES 532
+L+LDEATSALD ESER +Q ALD+ + +T+++IAHRLSTI +AD I V+ G +IE
Sbjct: 500 PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559
Query: 533 GSHDVLMQMNNGEGGAYSKMVQLQ 556
G H L+ + GAY+++ ++Q
Sbjct: 560 GRHADLLAQD----GAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 480 bits (1237), Expect = e-156
Identities = 157/585 (26%), Positives = 273/585 (46%), Gaps = 16/585 (2%)
Query: 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETR---- 694
+ R L+ R + I + + +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 695 LYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAA 754
+ + I+ Y ++ +R+K+ + ++ N
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQ 119
Query: 755 ICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFY 814
+ +R+ N+ + FI + + + +A ++ + ++ + + + P I Y
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 815 SRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874
++ ++ + ++ +E E + +F+ +D F + ++K
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMST-GKNIADAG 933
+ ++ + +T + + G ++ L AF + +
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298
Query: 934 SMTSDIAKGSSAIRTIFTILDRKSEI-DPEDPKASEDIEEPTKGFIELKNVFFSYPSRPD 992
+ + + + +++ +F ++D +I + + E +G I++ +V F Y +
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIK----QGRIDIDHVSFQYNDN-E 353
Query: 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052
I K + L IE G+TVA VG SG GKST+I LI RFYD SG +++D NIK + L
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
R+ I LV Q+ LF+ T+++NI+ G+ AT+ E+ +AA +ANAH+FI + GYDT GE
Sbjct: 414 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473
Query: 1113 RGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVA 1172
RGV+LSGGQKQR+++AR L NP IL+LDEATSALD SE+++QEAL+ + RT ++VA
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 533
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
HRLSTI AD IVVI+NG +VE GT L++ GAY L +Q
Sbjct: 534 HRLSTITHADKIVVIENGHIVETGTHRELIA--KQGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 447 bits (1151), Expect = e-144
Identities = 172/503 (34%), Positives = 255/503 (50%), Gaps = 28/503 (5%)
Query: 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129
T+ + IR + + F+ N QV++ + +D +D + + N
Sbjct: 86 QWTSNKILYDIRKKLYNHLQALSARFYANN----QVGQVISRVINDVEQTKDFILTGLMN 141
Query: 130 CLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGG 189
+ I ++ + F L +L LAAL +I+ VF L+ L + A G
Sbjct: 142 IWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG 201
Query: 190 IAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYG-AWAF 248
+ + I V SF E K F + +K ++
Sbjct: 202 FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII 261
Query: 249 QSWVGSVLVTERG-EKGGLV-FVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMID 306
VG+ L G L FV + + G + + A ++Q+ + R+F++ID
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT--LTQSFASMDRVFQLID 319
Query: 307 RVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSG 353
I + + +G I+ V F Y + P T+ VG SG
Sbjct: 320 EDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSG 377
Query: 354 SGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413
GKST+I+L+ RFYD G IL+DGH IK LR+Q+GLV Q+ ILFS ++KENIL+
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473
G+P A+ E VV+AA+ AN HDFIM L GY+T+VG+ GV+LSGGQKQR++IAR + +P
Sbjct: 438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497
Query: 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
IL+LDEATSALD ESE I+QEALD S+ RT +I+AHRLSTI AD I V+++G ++E+G
Sbjct: 498 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557
Query: 534 SHDVLMQMNNGEGGAYSKMVQLQ 556
+H L+ + GAY + +Q
Sbjct: 558 THRELIA----KQGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 457 bits (1178), Expect = e-152
Identities = 105/266 (39%), Positives = 155/266 (58%), Gaps = 8/266 (3%)
Query: 959 IDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSG 1018
+ P KG ++ ++V F+YP+ P+ + +GLT + GK ALVG +GSG
Sbjct: 1 MSPLSGSL---APLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSG 57
Query: 1019 KSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK 1078
KST+ L++ Y P G V++D + Y+ L + +A V QEP LF + R+NI YG
Sbjct: 58 KSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117
Query: 1079 -EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137
T EI A+ + AH+FIS GYDT GE G QLSGGQ+Q +ALARA+++ P +
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 1138 LLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195
L+LD ATSALD+ ++ VQ L + RT +++ +LS ++A +I+ +K G V EQ
Sbjct: 178 LILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237
Query: 1196 GTQSSLLSMGNGGAYYSLIKMQASRS 1221
GT L M GG Y S+++ A+ S
Sbjct: 238 GTHLQL--MERGGCYRSMVEALAAPS 261
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 442 bits (1140), Expect = e-147
Identities = 101/265 (38%), Positives = 148/265 (55%), Gaps = 21/265 (7%)
Query: 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKS 357
++ ++G ++F+DV F+YP P+ LVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 358 TVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG 417
TV +LL+ Y P G +LLDG + + +L +Q+ V QEP+LF S +ENI G
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 418 -ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILL 476
+ME + A + HDFI GY+T+VG+ G QLSGGQ+Q +A+ARALIR P++L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 477 LDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534
LD ATSALDA ++ VQ L ++ + RT+++I +LS +A I L+ G V E G+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 535 HDVLMQMNNGEGGAYSKMVQLQQSA 559
H LM+ GG Y MV+ +
Sbjct: 240 HLQLME----RGGCYRSMVEALAAP 260
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 416 bits (1073), Expect = e-137
Identities = 114/248 (45%), Positives = 159/248 (64%), Gaps = 19/248 (7%)
Query: 324 LRGEIEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDP 369
+I F+++ F Y +PD+P IG+VG SGSGKST+ L++RFY P
Sbjct: 4 HHHDITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 370 VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQA 429
G +L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
A HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 490 RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAY 549
++ + + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ Y
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE---PESLY 238
Query: 550 SKMVQLQQ 557
S + QLQ
Sbjct: 239 SYLYQLQS 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 415 bits (1069), Expect = e-137
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 2/244 (0%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
I +N+ F Y +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++
Sbjct: 5 HHDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094
G V++D ++ + LR + +V Q+ L +I NI + ++ AA LA
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
AH+FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE++
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1155 VQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214
+ + K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS Y L
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE-SLYSYLY 242
Query: 1215 KMQA 1218
++Q+
Sbjct: 243 QLQS 246
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-134
Identities = 100/241 (41%), Positives = 151/241 (62%), Gaps = 5/241 (2%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ ++V F+Y I + ++ + + +A G SG GKSTI L+ERFY P +G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV-ATEAEIRKAAVLANAH 1096
+D + I + +L RS I VSQ+ + AGTIR+N+ YG E T+ ++ + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
F+ + D +T GERGV++SGGQ+QR+A+ARA L+NP IL+LDEAT++LDS SE++VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216
+AL+ +M GRT +V+AHRLSTI AD I I+ G++ G + L++ Y +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA--THPLYAKYVSE 237
Query: 1217 Q 1217
Q
Sbjct: 238 Q 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 386 bits (995), Expect = e-126
Identities = 99/244 (40%), Positives = 145/244 (59%), Gaps = 16/244 (6%)
Query: 328 IEFKDVDFSYPTRPDT-----------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
+ + VDF+Y I G SG GKST+ SLLERFY P G I +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQAANVHDF 435
DG I + L+ RSQ+G V+Q+ + + +I+EN+ G + + E + + A F
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+ + D T+VG+ GV++SGGQ+QR+AIARA +R+PKIL+LDEAT++LD+ESE +VQ+A
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 496 LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555
LD +GRT ++IAHRLSTI AD I ++ G++ SG H+ L+ Y+K V
Sbjct: 182 LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA----THPLYAKYVSE 237
Query: 556 QQSA 559
Q +
Sbjct: 238 QLTV 241
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-128
Identities = 108/257 (42%), Positives = 162/257 (63%), Gaps = 3/257 (1%)
Query: 963 DPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTI 1022
+ + E+ IE +V FSYP + + K + I +G T ALVG +GSGKSTI
Sbjct: 3 ESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI 62
Query: 1023 IGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVAT 1082
L+ RFYD + G + + +N+ YN +RS I +V Q+ LF TI+ NI+YGK AT
Sbjct: 63 AKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 121
Query: 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
+ E+ KA A ++FI + +DT G +G++LSGG++QRIA+AR +LK+P I++ DE
Sbjct: 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 1143 ATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
ATS+LDS +E L Q+A+E + RT +++AHRLSTI A++I+++ GK+VE+GT LL
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
Query: 1203 SMGNGGAYYSLIKMQAS 1219
+ G Y + MQ+
Sbjct: 242 KL--NGEYAEMWNMQSG 256
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 378 bits (974), Expect = e-123
Identities = 110/262 (41%), Positives = 164/262 (62%), Gaps = 19/262 (7%)
Query: 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKS 357
+ S IEF DV+FSYP + + T LVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 358 TVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG 417
T+ LL RFYD +G+I + G + K +RS +G+V Q+ ILF+ +IK NIL GK
Sbjct: 61 TIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477
A+ E V+KA ++A ++DFI L ++T VG G++LSGG++QRIAIAR L++DPKI++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 478 DEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDV 537
DEATS+LD+++E + Q+A++ + RT+IIIAHRLSTI A+ I +L G+++E G+H
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 538 LMQMNNGEGGAYSKMVQLQQSA 559
L+++N G Y++M +Q
Sbjct: 240 LLKLN----GEYAEMWNMQSGG 257
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 392 bits (1009), Expect = e-123
Identities = 157/584 (26%), Positives = 289/584 (49%), Gaps = 19/584 (3%)
Query: 637 SSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLY 696
++L RLL ++ + S + Y +G + F+ Y
Sbjct: 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRY 79
Query: 697 CLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAIC 756
LI + LT + +Q + + +V R+R+++ EK+ +G+FD+ I
Sbjct: 80 MLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDII 137
Query: 757 ARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSR 816
+R+ N+ + + + + + + + A + V +++V +++ PL + ++
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV--LITQ 195
Query: 817 SVLMKS--MSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874
V ++ + ++ + + + E + I F+ +++ ++ F + +K K
Sbjct: 196 IVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255
Query: 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMST-GKNIADAG 933
FSG+ + L + G + + +++ + F + + +
Sbjct: 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTI-ATFIGYSRQFTRPLNELS 314
Query: 934 SMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQ 993
+ + I ++ IF ILD + E D D ++ +G IE KNV+FSY +
Sbjct: 315 NQFNMIQMALASAERIFEILDLEEEKDDPDAVELREV----RGEIEFKNVWFSY--DKKK 368
Query: 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053
+ K +T I+ G+ VALVG +GSGK+TI+ L+ RFYD G ++VD +I+ LR
Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428
Query: 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113
S I +V Q+ LF+ T+++N+ YG AT+ EI++AA L ++ FI +GY+T +
Sbjct: 429 SSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488
Query: 1114 GVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
G LS GQ+Q +A+ RA L NP IL+LDEATS +D+ +E +Q A+ K+M G+T +++AH
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAH 548
Query: 1174 RLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
RL+TI+ AD I+V+++G++VE G L+ G YY L Q
Sbjct: 549 RLNTIKNADLIIVLRDGEIVEMGKHDELIQK--RGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-112
Identities = 174/599 (29%), Positives = 285/599 (47%), Gaps = 85/599 (14%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINEL-GTSDIS---------ISI 56
L Y L+ V ++ L+ Y++ I+ + +I
Sbjct: 28 LLGYL-RPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTI 86
Query: 57 EAVDKVPEKGMCW--TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITS 114
A+ + ++ R+R E + + R VGFFD +++ + +
Sbjct: 87 YALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGD----IISRVIN 142
Query: 115 DAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAAL---PFSLL---FIVP--G 166
D +I + + I + + + G++++ F ++ L+L L P ++L +
Sbjct: 143 DVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTR 202
Query: 167 IVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGI 226
F + + LG GI E+ IS + + F E + +++F ++G
Sbjct: 203 KYFYENQRVLGQLN--------GIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGT 254
Query: 227 KQGLTKGLLLGSMG-MTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSAL 285
K + G+L M + +A S G L K + VG ++
Sbjct: 255 KAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL----KDII-----------TVGTIATF 299
Query: 286 PN--------LSFISQ-------ATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEF 330
L+ +S A +A RIFE++D + D + L +RGEIEF
Sbjct: 300 IGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAV--ELREVRGEIEF 357
Query: 331 KDVDFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
K+V FSY P + LVG +GSGK+T+++LL RFYD +G IL+D
Sbjct: 358 KNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIM 437
G I+K++ LRS +G+V Q+ ILFST++KEN+ G PGA+ E + +AA+ + FI
Sbjct: 416 GIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK 475
Query: 438 KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497
L +GYET + G LS GQ+Q +AI RA + +PKIL+LDEATS +D ++E+ +Q A+
Sbjct: 476 HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535
Query: 498 QASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQ 556
+ +G+T IIIAHRL+TI+ ADLI VL+ G ++E G HD L+Q + G Y ++ Q
Sbjct: 536 KLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ----KRGFYYELFTSQ 590
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-120
Identities = 118/276 (42%), Positives = 173/276 (62%), Gaps = 7/276 (2%)
Query: 946 IRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEA 1005
+ +F +L ++E+ +D + + KG IE +NV FSY + + ++ +
Sbjct: 25 MENMFDLLKEETEV--KDLPGAGPLR-FQKGRIEFENVHFSY--ADGRETLQDVSFTVMP 79
Query: 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065
G+T+ALVG SG+GKSTI+ L+ RFYD SG + +D ++I LRS I +V Q+ L
Sbjct: 80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139
Query: 1066 FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125
F TI NI YG+ A E+ AA A H+ I + +GY T GERG++LSGG+KQR+
Sbjct: 140 FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199
Query: 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIV 1185
A+AR +LK P I+LLDEATSALD+++E +Q +L K+ RT +VVAHRLST+ AD I+
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQIL 259
Query: 1186 VIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221
VIK+G +VE+G +LLS GG Y + ++Q +
Sbjct: 260 VIKDGCIVERGRHEALLSR--GGVYADMWQLQQGQE 293
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 359 bits (924), Expect = e-115
Identities = 117/285 (41%), Positives = 169/285 (59%), Gaps = 18/285 (6%)
Query: 291 ISQATTAATRIFEMIDRVPVINSEDEIG-KTLAYLRGEIEFKDVDFSY-PTRP------- 341
S +F+++ + +D G L + +G IEF++V FSY R
Sbjct: 18 GSHMFIDMENMFDLLKEETEV--KDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSF 75
Query: 342 DTP---TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ 398
T+ LVG SG+GKST++ LL RFYD G I +DG I ++ LRS +G+V Q
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 399 EPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458
+ +LF+ +I +NI G+ A + V AAQAA +HD IM +GY T+VG+ G++LSGG+
Sbjct: 136 DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195
Query: 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKA 518
KQR+AIAR +++ P I+LLDEATSALD +ER +Q +L + RT I++AHRLST+ A
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA 255
Query: 519 DLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNE 563
D I V++ G ++E G H+ L+ GG Y+ M QLQQ
Sbjct: 256 DQILVIKDGCIVERGRHEALLSR----GGVYADMWQLQQGQEETS 296
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 326 bits (839), Expect = 5e-99
Identities = 126/458 (27%), Positives = 236/458 (51%), Gaps = 26/458 (5%)
Query: 104 STFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLA---LAALPFSL 160
T ++T +T+D +Q+ V + + F+G I++A ++ +L+ + +P
Sbjct: 118 HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIP--P 175
Query: 161 LFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRK 220
+ ++ + K L + +++ + + + + +R V +F E + F A
Sbjct: 176 IVLLFVWLTKKGNP-LFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANES 234
Query: 221 NMELGIKQGLTKGLLLGSMGMT-YGAWAFQSWVGSVLVTERG-EKGGLV-FVAGICTILG 277
I L W G VLV E G ++ + + I+
Sbjct: 235 LRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 278 GVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSY 337
+ ++ + L+FI +A+ +A R+ E+++ P I D L + G + F++V+F Y
Sbjct: 295 SLMMIGNI--LNFIVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVEFRY 351
Query: 338 P-------------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL 384
+P + + ++G +GSGKST+++L+ R DP +G + +D ++ +
Sbjct: 352 FENTDPVLSGVNFSVKPGS-LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410
Query: 385 QLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE 444
+LK LR + V QE +LFS +IKEN+ G+ A+ + +V+AA+ A +HDFI+ L +GY+
Sbjct: 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYD 470
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRT 504
++V + G SGGQKQR++IARAL++ PK+L+LD+ TS++D +E+ + + L + ++G T
Sbjct: 471 SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCT 530
Query: 505 MIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542
II ++ T AD I VL G+V G+H L++
Sbjct: 531 TFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC 568
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = 8e-98
Identities = 130/518 (25%), Positives = 255/518 (49%), Gaps = 28/518 (5%)
Query: 696 YCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAI 755
++ L +A + + + + ++ +R + K+ +F I ++ ++++
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSL 122
Query: 756 CARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYS 815
RL N+ +++ + + ++++ +++ + +++ V+I + P + F
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV- 181
Query: 816 RSVLMKSMSEKAKKSQS---EGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKES 872
L K + +K Q E +++ E R + AF ++ + FR+ + ++
Sbjct: 182 --WLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239
Query: 873 IKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL-------FQAFFLLMST 925
I L F+ + W+ G ++ + + Q F LM
Sbjct: 240 ISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM- 298
Query: 926 GKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEI-DPEDPKASEDIEEPTKGFIELKNVF 984
G++ + I + S++ + + +L+ K I + ++ A +G + +NV
Sbjct: 299 ------IGNILNFIVRASASAKRVLEVLNEKPAIEEADNALA----LPNVEGSVSFENVE 348
Query: 985 FSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044
F Y + G+ ++ G VA++G++GSGKST++ LI R DP+ G V VDE ++
Sbjct: 349 FRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 1045 KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTED 1104
++ L+ LR I+ V QE LF+GTI++N+ +G+E AT+ EI +AA +A H+FI S +
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPE 467
Query: 1105 GYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164
GYD+ G SGGQKQR+++ARA++K P +L+LD+ TS++D +E + + L++
Sbjct: 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK 527
Query: 1165 GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202
G T ++ ++ T AD I+V+ GKV GT LL
Sbjct: 528 GCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-60
Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 6/255 (2%)
Query: 962 EDPKASEDIEEPTKGFIELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKS 1020
E+ +D P+ G + +K++ Y I + ++ I G+ V L+G++GSGKS
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1021 TIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV 1080
T++ R + G + +D + S L + R ++ Q+ +F+GT R+N+
Sbjct: 62 TLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAA 119
Query: 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLL 1140
++ EI K A I D + G LS G KQ + LAR+VL ILLL
Sbjct: 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179
Query: 1141 DEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200
DE ++ LD + +++ L++ T ++ R+ + + D +VI+ KV + +
Sbjct: 180 DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239
Query: 1201 LLSMGNGGAYYSLIK 1215
L + +
Sbjct: 240 LYHYPA-DRFVAGFI 253
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 1e-55
Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 21/291 (7%)
Query: 325 RGEIEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKSTVISLLERFYDPV 370
G++ KD+ Y +GL+G +GSGKST++S R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAA 430
+G I +DG + L+ R G++ Q+ +FS + ++N L S + + K A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEV 132
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+ I + + + G LS G KQ + +AR+++ KILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 491 IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYS 550
I++ L QA T+I+ R+ + + D V++ +V + S L +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY---PADRFV 249
Query: 551 KMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSYQNSPI 601
V + + + + + Q P+ + +
Sbjct: 250 AGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANM 300
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 3e-47
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ 1033
T + ++NV + + K + KIE G+ +A+ G +G+GK++++ +I +P
Sbjct: 3 TTTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 1034 SGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE--AEIRKAAV 1091
G + R I+ SQ + GTI++NI++G + KA
Sbjct: 62 EGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 108
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA- 1150
L E IS + + GE G+ LSGGQ+ RI+LARAV K+ + LLD LD
Sbjct: 109 L---EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 1151 SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAY 1210
+ + + + K+M +T ++V ++ ++KAD I+++ G GT S L + +
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN--LQPDF 223
Query: 1211 YSLI 1214
S +
Sbjct: 224 SSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 325 RGEIEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVK 371
E+ ++V + TP + + GS+G+GK++++ ++ +P +
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQA 429
G I G ++ +Q + +IKENI+ G +V+KA
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC-- 107
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
D + +G+ G+ LSGGQ+ RI++ARA+ +D + LLD LD +E
Sbjct: 108 QLEEDISK-FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 490 R-IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGA 548
+ I + + + +T I++ ++ ++KAD I +L G G+ L +
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL----QPD 222
Query: 549 YSKM 552
+S
Sbjct: 223 FSSK 226
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 6e-44
Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 24/243 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I ++N F++ +R D G+T I G VA+VGQ G GKS+++ + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE--AEIRKAAVLANA 1095
+ +A V Q+ + ++R+NI++G ++ + +A L
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL-- 107
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS-ASENL 1154
+ G T GE+GV LSGGQKQR++LARAV N I L D+ SA+D+ +++
Sbjct: 108 -PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1155 VQEAL--EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212
+ + + M+ +T ++V H +S + + D I+V+ GK+ E G+ LL+ GA+
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA--RDGAFAE 224
Query: 1213 LIK 1215
++
Sbjct: 225 FLR 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 39/256 (15%)
Query: 326 GEIEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKG 372
I ++ F++ R D PT + +VG G GKS+++S L D V+G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP--GASMETVVKAAQAA 430
++ + G + V Q+ + + S++ENIL G +V++A A
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--A 105
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE-SE 489
+ D + L G T++G+ GV LSGGQKQR+++ARA+ + I L D+ SA+DA +
Sbjct: 106 LLPDLEI-LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 490 RIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547
I + + + +T I++ H +S + + D+I V+ G++ E GS+ L+ G
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR----DG 220
Query: 548 AYSKMVQLQQSAMRNE 563
A+++ ++ S +
Sbjct: 221 AFAEFLRTYASHHHHH 236
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 7e-44
Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 22/261 (8%)
Query: 958 EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGS 1017
E E + ++ K ++ FS S + K + KIE G+ +A+ G +G+
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGA 75
Query: 1018 GKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG 1077
GK++++ +I +P G + R I+ SQ + GTI++NI+ G
Sbjct: 76 GKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENII-G 121
Query: 1078 KEVATE--AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135
+ KA L E IS + + GE G+ LSGGQ+ RI+LARAV K+
Sbjct: 122 VSYDEYRYRSVIKACQL---EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178
Query: 1136 MILLLDEATSALDSA-SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194
+ LLD LD + + + + K+M +T ++V ++ ++KAD I+++ G
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 1195 QGTQSSLLSMGNGGAYYSLIK 1215
GT S L + + S +
Sbjct: 239 YGTFSELQN--LRPDFSSKLM 257
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 5e-36
Identities = 61/308 (19%), Positives = 117/308 (37%), Gaps = 38/308 (12%)
Query: 292 SQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPT------ 345
S + + E + + FS + TP
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNN-RKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 346 -------IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQ 398
+ + GS+G+GK++++ ++ +P +G I G ++ +Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 399 EPILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+ +IKENI+ G +V+KA D + +G+ G+ LSG
Sbjct: 107 NSWIMPGTIKENII-GVSYDEYRYRSVIKAC--QLEEDISK-FAEKDNIVLGEGGITLSG 162
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDAESER-IVQEALDQASQGRTMIIIAHRLSTI 515
GQ+ RI++ARA+ +D + LLD LD +E+ I + + + +T I++ ++ +
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222
Query: 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSK 575
+KAD I +L G G+ L + +S + S + + T++
Sbjct: 223 KKADKILILHEGSSYFYGTFSELQNL----RPDFSSKLMGCDSFDQFSAERRNSILTETL 278
Query: 576 SHHSLMSA 583
SL
Sbjct: 279 HRFSLEGD 286
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-40
Identities = 51/259 (19%), Positives = 104/259 (40%), Gaps = 29/259 (11%)
Query: 962 EDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST 1021
+S + + I+L + + I K ++ +I G L G +G+GK+T
Sbjct: 6 HHHHSSGLVPRGSHMLIQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTT 62
Query: 1022 IIGLIERFYDPQSGSVMVDERNIKS--YNLRKLRSCIALVSQEPTL---FAGTIRQNIVY 1076
++ ++ + SG+V + + Y+ +R I VS + ++
Sbjct: 63 LLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS 122
Query: 1077 GK-------EVATEAEIRKA-AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128
G + + +A +L G + LS G+KQR+ +A
Sbjct: 123 GAFKSIGVYQDIDDEIRNEAHQLLKLV---------GMSAKAQQYIGYLSTGEKQRVMIA 173
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM---VGRTCVVVAHRLSTI-QKADNI 1184
RA++ P +L+LDE + LD + + L+ + + V H + I I
Sbjct: 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKI 233
Query: 1185 VVIKNGKVVEQGTQSSLLS 1203
+++K+G+ ++QG +L+
Sbjct: 234 LLLKDGQSIQQGAVEDILT 252
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 31/236 (13%)
Query: 328 IEFKDVDFSYPTRPDTPTI--------------GLVGSSGSGKSTVISLLERFYDPVKGN 373
I+ + + I L G +G+GK+T++++L + G
Sbjct: 22 IQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 374 ILLDGHKIKKL--QLKWLRSQMGLVNQE---PILFSTSIKENILIGKPGAS-METVVKAA 427
+ L G K+ + +R +G V+ + + ++ G + + +
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE 137
Query: 428 QAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487
H + + G K Q+ LS G+KQR+ IARAL+ P++L+LDE + LD
Sbjct: 138 IRNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195
Query: 488 SERIVQEALDQ-ASQGR--TMIIIAHRLSTIRKA-DLIGVLQSGRVIESGS-HDVL 538
+ + LD + MI + H + I I +L+ G+ I+ G+ D+L
Sbjct: 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-39
Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I+LKNV + + ++ + + L++ G+ V ++G +GSGK+T++ I P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAG--TIRQNIVYGKEV--ATEAEIRKAAVL 1092
+ ++ + RK+R+ I + P + T+ + +E+ +
Sbjct: 60 IFINGMEV-----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEML-- 112
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
+ + E+ +LS GQ + + A+ P I+ LDE +D+A
Sbjct: 113 ----KALKLGEEILRRKLY----KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ 1195
+++ +++ G+ ++V H L + + G ++
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQG 206
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-35
Identities = 44/262 (16%), Positives = 102/262 (38%), Gaps = 37/262 (14%)
Query: 328 IEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNI 374
I+ K+V + + + ++G +GSGK+T++ + P GNI
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60
Query: 375 LLDGHKIKKLQLKWLRSQMGLVNQEPILFS--TSIKENILIGK--PGASMETVVKAAQAA 430
++G +++K+ R+ + P + ++ + + + + G + ++ +
Sbjct: 61 FINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK-- 113
Query: 431 NVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESER 490
+KL + + +LS GQ + + AL P+I+ LDE +DA
Sbjct: 114 -----ALKLGEEILRR---KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 491 IVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIE-SGSHDVLMQMNNGEGGA 548
++ + + G+ I++ H L + + G ++ S L++ + EG
Sbjct: 166 VISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223
Query: 549 YSKMVQLQQSAMRNEVASGSYN 570
++ L + + G
Sbjct: 224 NDALLVLDIMDKKVSIVKGDLG 245
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-38
Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 32/236 (13%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++++ + ++Y KG+ + I+ G+ A++G +G GKST+ P SG +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1038 MVDERNI--KSYNLRKLRSCIALVSQEPT--LFAGTIRQNIVYG--------KEVATEAE 1085
+ D + I + KLR I +V Q+P LF+ ++ Q++ +G E+
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI--RKR 123
Query: 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEAT 1144
+ A ++ LS GQK+R+A+A ++ P +L+LDE T
Sbjct: 124 VDNALKRTGIEHLK------------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 1145 SALDSASENLVQEALEKMM--VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
+ LD + + + L +M +G T ++ H + + DN+ V+K G+V+ QG
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-33
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 38/239 (15%)
Query: 328 IEFKDVDFSYPTRPDTPT-------------IGLVGSSGSGKSTVISLLERFYDPVKGNI 374
++ ++++++Y T ++G +G GKST+ P G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 375 LLDGHKI--KKLQLKWLRSQMGLVNQEPI--LFSTSIKENIL-----IGKPGASMETVVK 425
L D I + + LR +G+V Q+P LFS S+ +++ + P + V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 426 AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485
A + + + K LS GQK+R+AIA L+ +PK+L+LDE T+ LD
Sbjct: 126 NALKR------TGI-EHLKDKPTH---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 486 AESERIVQEALD--QASQGRTMIIIAHRLSTI-RKADLIGVLQSGRVIESGS-HDVLMQ 540
+ + L Q G T+II H + + D + V++ GRVI G+ +V +
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-37
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 978 IELKNVFFSYPSRP--DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
IE+ NV + ++ + ++L I G+ + + G +GSGKST++ ++ +P SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIVYGKE-VATEAEIRKAAVL 1092
V+ D ++R I + Q P FA + + + + + +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL--- 116
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
+ + +D++ LSGG+K+R+A+A ++ P IL+LDE LD +
Sbjct: 117 --VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 1153 NLVQEALEKM-MVGRTCVVVAHRLSTI-QKADNIVVIKNGKVVEQGT 1197
+ +EK +G+T ++++H + T+ D +VV++ GK V GT
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 328 IEFKDVDFSYPTRPDTPT-----------------IGLVGSSGSGKSTVISLLERFYDPV 370
IE +V + TP + + G++GSGKST++ ++ +P
Sbjct: 3 IEVVNVSHIFH--RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPI--LFSTSIKENIL-----IGKPGASMETV 423
G++L DG + K +R +G+ Q P F+ + + + + V
Sbjct: 61 SGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 117
Query: 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483
KA + + D ++ +V LSGG+K+R+AIA ++ +P IL+LDE
Sbjct: 118 KKAMEFVGLDF------DSFKDRVPF---FLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 484 LDAESERIVQEALDQ-ASQGRTMIIIAHRLSTI-RKADLIGVLQSGRVIESGS 534
LD E + + +++ + G+T+I+I+H + T+ D + VL+ G+ + G+
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-36
Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 21/255 (8%)
Query: 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMI-FKGLTLKIEAGKTVALVGQSGSGK 1019
+S I++ K I+L N+ + + ++L + AG+ ++G SG+GK
Sbjct: 8 HHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK 67
Query: 1020 STIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLRSCIALVSQEPTLFAG-TIRQNIV 1075
ST+I + P GSV+VD + + + + L K R I ++ Q L + T+ N+
Sbjct: 68 STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127
Query: 1076 YGKEVATEAEIRKAAVLANAHEFIS--STEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133
E+ K V E +S D +D+Y LSGGQKQR+A+ARA+
Sbjct: 128 LPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALAS 180
Query: 1134 NPMILLLDEATSALDSASEN----LVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIK 1188
NP +LL D+ATSALD A+ L+++ ++ G T +++ H + +++ D + VI
Sbjct: 181 NPKVLLCDQATSALDPATTRSILELLKDINRRL--GLTILLITHEMDVVKRICDCVAVIS 238
Query: 1189 NGKVVEQGTQSSLLS 1203
NG+++EQ T S + S
Sbjct: 239 NGELIEQDTVSEVFS 253
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 5e-34
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 42/236 (17%)
Query: 328 IEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKST---VISLLERFYDPV 370
I+ ++ + T G++G+SG+GKST ++LLER P
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PT 81
Query: 371 KGNILLDGHKIKKL---QLKWLRSQMGLVNQEPILFST-SIKENI-----LIGKPGASME 421
+G++L+DG ++ L +L R Q+G++ Q L S+ ++ N+ L P
Sbjct: 82 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----- 136
Query: 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481
K V + + + G K + LSGGQKQR+AIARAL +PK+LL D+AT
Sbjct: 137 ---KDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191
Query: 482 SALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
SALD + R + E L ++ G T+++I H + +++ D + V+ +G +IE +
Sbjct: 192 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 3e-33
Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 32/256 (12%)
Query: 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSG 1016
S I++ + S+ + KG+ + I G+ V ++G SG
Sbjct: 4 SHHHHHHSSGLVPRGSHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSG 60
Query: 1017 SGKSTIIGLIERFYDPQSGSVMVDERNI--KSYNLRKLRSCIALVSQEPTLFAG-TIRQN 1073
SGKST + + D G +++D N+ K NL K+R + +V Q LF T+ N
Sbjct: 61 SGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNN 120
Query: 1074 IVYGKEVATEAEIR-----KAAVLANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIA 1126
I T A ++ + A A E + +D Y LSGGQ QR+A
Sbjct: 121 I-------TLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD----SLSGGQAQRVA 169
Query: 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV----GRTCVVVAHRLSTIQK-A 1181
+ARA+ P I+L DE TSALD E +V E L M G T VVV H + ++
Sbjct: 170 IARALAMEPKIMLFDEPTSALD--PE-MVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG 226
Query: 1182 DNIVVIKNGKVVEQGT 1197
D ++ + G ++E+G
Sbjct: 227 DRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 6e-32
Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 19/197 (9%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI--KKLQLKWLRSQMGLVNQEPILFS- 404
++G SGSGKST + L D +G I++DG + K L +R ++G+V Q LF
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLND--GYETKVGQFGVQLSGGQKQRI 462
++ NI + P V+ M+L D G + K + LSGGQ QR+
Sbjct: 115 MTVLNNITLA-P-----MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV 168
Query: 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQ----ASQGRTMIIIAHRLSTIRK- 517
AIARAL +PKI+L DE TSALD E +V E L A++G TM+++ H + R+
Sbjct: 169 AIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGMTMVVVTHEMGFAREV 225
Query: 518 ADLIGVLQSGRVIESGS 534
D + + G +IE G
Sbjct: 226 GDRVLFMDGGYIIEEGK 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 9e-32
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 53/222 (23%)
Query: 346 IGLVGSSGSGKSTV---ISLLERFYDPVKGNILLDGHKI-------------KKLQLKWL 389
I ++GSSGSGKST I+ LE P +G I+++G I K QL+ L
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91
Query: 390 RSQMGLVNQEPILFS-TSIKENILIGKP----GASMETVVKAAQAANVHDFIMKLNDGYE 444
R+++ +V Q L+S ++ EN++ P G S + A Y
Sbjct: 92 RTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKHDARERALK-------------YL 137
Query: 445 TKVG-------QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL- 496
KVG ++ V LSGGQ+QR++IARAL +P +LL DE TSALD E +V E L
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVLR 194
Query: 497 ---DQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
A +G+TM+++ H + R + + L G++ E G
Sbjct: 195 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 44/247 (17%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ + ++ Y + KG++L+ AG ++++G SGSGKST + I P G++
Sbjct: 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1038 MVDERNI-------------KSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATE 1083
+V+ +NI LR LR+ + +V Q L++ T+ +N+ E
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV-------ME 116
Query: 1084 AEIR-----KAAVLANAHEFISS---TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135
A I+ K A ++++ E Y LSGGQ+QR+++ARA+ P
Sbjct: 117 APIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV----HLSGGQQQRVSIARALAMEP 172
Query: 1136 MILLLDEATSALDSASENLVQEALEKMMV----GRTCVVVAHRLSTIQK-ADNIVVIKNG 1190
+LL DE TSALD E LV E L M G+T VVV H + + + +++ + G
Sbjct: 173 DVLLFDEPTSALD--PE-LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
Query: 1191 KVVEQGT 1197
K+ E+G
Sbjct: 230 KIEEEGD 236
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-31
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 34/237 (14%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST---IIGLIERFYDPQS 1034
+ +N+ I KG++L ++ G+ V+++G SGSGKST I+GL++ P
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 1035 GSVMVDERNIKSYNLRKL----RSCIALVSQE----PTLFAGTIRQNI----VYGKEVAT 1082
G V ++ + + N ++L + V Q P L T +N+ + +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMGKPKK 115
Query: 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142
EA+ R +L+ G + +LSGG++QR+A+ARA+ P++L DE
Sbjct: 116 EAKERGEYLLSEL---------GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 1143 ATSALDSASENLVQEALEKM-MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198
T LDSA+ V + K+ G + V+V H + + +K+GKVV + T+
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-25
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 29/198 (14%)
Query: 349 VGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQM-GLVNQEPI 401
+G+SGSGKST ++ LL+ P +G + L+G ++ +L LR++ G V Q
Sbjct: 36 IGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92
Query: 402 LFS-TSIKENILI-----GKPGASMETVVKAAQAANVHDFIMKLND-GYETKVGQFGVQL 454
L + EN+++ GKP E + L++ G K+ + +L
Sbjct: 93 LIPELTALENVIVPMLKMGKPKK--EAKERGEYL---------LSELGLGDKLSRKPYEL 141
Query: 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLS 513
SGG++QR+AIARAL +P +L DE T LD+ + + V + + G +++++ H
Sbjct: 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201
Query: 514 TIRKADLIGVLQSGRVIE 531
++ G+V+
Sbjct: 202 LAELTHRTLEMKDGKVVG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 4e-31
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 29/235 (12%)
Query: 978 IELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKST---IIGLIERFYDPQ 1033
++LKNV +Y + + K + L I+ G+ V+++G SGSGKST IIG +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1034 SGSVMVDERNIKSYNLRKL----RSCIALVSQE----PTLFAGTIRQNI----VYGKEVA 1081
G V +D + +L R I V Q+ P L T +N+ ++ A
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGA 115
Query: 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
E R+ A E + E + + + QLSGGQ+QR+A+ARA+ NP I+L D
Sbjct: 116 MSGEERRKR----ALECLKMAELE-ERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 1142 EATSALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194
+ T ALDS + + + L+K+ G+T VVV H ++ + + I+ +K+G+V
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 28/201 (13%)
Query: 348 LVGSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKL---QLKWLRSQM-GLVNQE- 399
++G SGSGKST +I L++ P +G + +D K L +L +R G V Q+
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 400 PILFSTSIKEN-----ILIGKPGASMETVVKAAQAANVHDFIMKLND-GYETKVGQFG-V 452
++ + EN I + S E K A L E +
Sbjct: 93 NLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC--------LKMAELEERFANHKPN 144
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ--ASQGRTMIIIAH 510
QLSGGQ+QR+AIARAL +P I+L D+ T ALD+++ + + L + G+T++++ H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 511 RLSTIRKADLIGVLQSGRVIE 531
++ R + I L+ G V
Sbjct: 205 DINVARFGERIIYLKDGEVER 225
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-31
Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 28/242 (11%)
Query: 306 DRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLER 365
+RV + L G + IG+VG +G GK+T + +L
Sbjct: 278 ERVEIERETLVTYPRLVKDYGSFRLEVEPGEIK---KGEVIGIVGPNGIGKTTFVKMLAG 334
Query: 366 FYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVK 425
+P +G I D K Q + E L S + ++K
Sbjct: 335 VEEPTEGKIEWDLTVAYKPQYIKADYEG--TVYE--LLSKIDASKL---NSNFYKTELLK 387
Query: 426 AAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485
+ + D Y+ +V + LSGG+ QR+AIA L+RD I LLDE ++ LD
Sbjct: 388 P----------LGIIDLYDREVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
Query: 486 AESERIVQEALD--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542
E V A+ +T +++ H + I +D + V + G + G M M
Sbjct: 434 VEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYGRALPPMGMR 492
Query: 543 NG 544
G
Sbjct: 493 EG 494
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-30
Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 41/262 (15%)
Query: 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014
R + + K E +E + + + Y S + +I+ G+ + +VG
Sbjct: 265 RFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGP 320
Query: 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL---FAGTIR 1071
+G GK+T + ++ +P G + D + + + + GT+
Sbjct: 321 NGIGKTTFVKMLAGVEEPTEGKIEWDLT---------------VAYKPQYIKADYEGTVY 365
Query: 1072 QNIVYGKEVATEAEIRKAAVLA--NAHEFISSTEDGYDTYCGERGVQ-LSGGQKQRIALA 1128
+ + + K +L + +R V LSGG+ QR+A+A
Sbjct: 366 ELLSKIDASKLNSNFYKTELLKPLGIIDLY------------DREVNELSGGELQRVAIA 413
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIV 1185
+L++ I LLDE ++ LD V A+ +M +T +VV H + I +D ++
Sbjct: 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM 473
Query: 1186 VIKNGKVVEQGTQSSLLSMGNG 1207
V + G+ + G + M G
Sbjct: 474 VFE-GEPGKYGRALPPMGMREG 494
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 22/236 (9%)
Query: 308 VPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLL---- 363
VP + E ++ + + G F V + P + +G+VG +G+GKST + +L
Sbjct: 15 VPRSHME-QLEEDCVHRYGVNAF--VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71
Query: 364 -ERFYD-PVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPILFSTSIKENILIGKPGA 418
+ ++ + +LQ K ++ V + + I + + GK
Sbjct: 72 IPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPK-AVKGKVIE 128
Query: 419 SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478
++ + + V ++L + E ++ LSGG+ QR+AIA AL+R+ D
Sbjct: 129 LLKKADETGKLEEVVK-ALELENVLEREIQH----LSGGELQRVAIAAALLRNATFYFFD 183
Query: 479 EATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIES 532
E +S LD A+ + + +G++++++ H L+ + +D+I V+ +
Sbjct: 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-22
Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 34/232 (14%)
Query: 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTII-----GLIERFYD-PQS 1034
++ Y ++ G V +VG +G+GKST + LI S
Sbjct: 25 EDCVHRYGVNAFV---LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1035 GSVMVDERNIK---SYNLRKLRSCIALVSQE------PTLFAGTIRQNIVYGKEVATEAE 1085
++ +Y + I V + P G + + + +
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--------KKA 133
Query: 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
+ E+ + LSGG+ QR+A+A A+L+N DE +S
Sbjct: 134 DETGKLEEVVKAL--ELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSS 187
Query: 1146 ALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQ 1195
LD A+ ++ G++ +VV H L+ + +D I V+ V
Sbjct: 188 YLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-30
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
IG++G +G GK+T +L +G++ + + + + G V Q
Sbjct: 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLE 352
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+ K+ + E V K + L+ E+ V LSGG+ Q++ I
Sbjct: 353 NASKDALSTSS--WFFEEVTKR----------LNLHRLLESNVND----LSGGELQKLYI 396
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLSTIRK-ADLI 521
A L ++ + +LD+ +S LD E IV +A+ + II H LS AD I
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 522 GVLQSGRVIESGSHDVLMQMNNG 544
V + G ++G + + G
Sbjct: 457 IVFK-GEPEKAGLATSPVTLKTG 478
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 8e-29
Identities = 48/271 (17%), Positives = 104/271 (38%), Gaps = 35/271 (12%)
Query: 944 SAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKI 1003
+ + + D+ + K ++ + +
Sbjct: 236 GYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEA 291
Query: 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP 1063
+ G+ + ++G +G GK+T ++ GSV +++ + SY ++ +
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL-SYKPQR-------IFPNY 343
Query: 1064 TLFAGTIRQNIVYG-KEVATEAEIRKAAVLA--NAHEFISSTEDGYDTYCGERGVQ-LSG 1119
GT++Q + K+ + + V N H + E V LSG
Sbjct: 344 D---GTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL------------ESNVNDLSG 388
Query: 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLST 1177
G+ Q++ +A + K + +LD+ +S LD +V +A++++ ++ H LS
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Query: 1178 IQK-ADNIVVIKNGKVVEQGTQSSLLSMGNG 1207
AD I+V K G+ + G +S +++ G
Sbjct: 449 HDYIADRIIVFK-GEPEKAGLATSPVTLKTG 478
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-25
Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 20/217 (9%)
Query: 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385
FK P +G++G +G GK+TV+ +L P G+ + K
Sbjct: 10 KVNGFKLFGLPTPKNNTI--LGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEV 65
Query: 386 LKWLR-SQMGLVNQEPI---------LFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435
LK R ++ +E + L G + + + + V +
Sbjct: 66 LKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKE- 124
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
++ + + + LSGG QR+ +A +L+R+ + + D+ +S LD + +A
Sbjct: 125 LLNMTNLWNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 496 LDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIE 531
+ + + + +I++ H L + DLI ++ +
Sbjct: 181 IRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 29/232 (12%)
Query: 981 KNVFFSYPSRPDQMIFKGLTLKI-EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039
V Y FK L + + ++G++G GK+T++ ++ P G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56
Query: 1040 DERNIKSYNLRKLR-SCIALVSQEPTLFAGTIRQNIVY-GKEVATEAEIRKAAVLANAHE 1097
+ + K L++ R I +E + IV+ + V ++ K V +E
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL----YSNELKIVHKIQYVEYASKFLKGTV----NE 108
Query: 1098 FISSTEDG--YDTYCGERGV---------QLSGGQKQRIALARAVLKNPMILLLDEATSA 1146
++ ++ D + LSGG QR+ +A ++L+ + + D+ +S
Sbjct: 109 ILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 1147 LDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
LD + +A+ +++ + +VV H L + D I +I V
Sbjct: 169 LDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRV 220
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054
L+ ++ AG+ + LVG +G+GKST++ + GS+ + +++++ KL
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1055 CIALVSQEPTL-FAGTIRQNIVYGKEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112
A +SQ+ T FA + + + + A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK------------LG 121
Query: 1113 RGV-QLSGGQKQRIALARAVL-------KNPMILLLDEATSALDSASENLVQEALEKM-M 1163
R QLSGG+ QR+ LA VL +LLLDE ++LD A ++ + + L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 1164 VGRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGT 1197
G V+ +H L+ T++ A ++K GK++ G
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL-FS 404
+ LVG +G+GKST+++ + KG+I G ++ L ++Q+ F+
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 405 TSIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
T + + + E + A A + D + + + QLSGG+ QR+
Sbjct: 88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN-----------QLSGGEWQRVR 136
Query: 464 IARAL-------IRDPKILLLDEATSALD-AESERIVQEALDQASQGRTMIIIAHRLS-T 514
+A + ++LLLDE ++LD A+ + + + QG +++ +H L+ T
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196
Query: 515 IRKADLIGVLQSGRVIESGS-HDVL 538
+R A +L+ G+++ SG +VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-30
Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 31/256 (12%)
Query: 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014
R EI D+E T +E + Y S + +I G+ + +VG
Sbjct: 337 RPYEIRFTKLSERVDVERET--LVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGP 390
Query: 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI 1074
+G GK+T + ++ +P G V D +Y + +++ + GT+ + +
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAE----------YEGTVYELL 438
Query: 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134
+ K +L D YD + LSGG+ QR+A+A +L++
Sbjct: 439 SKIDSSKLNSNFYKTELLKPLGI-----IDLYDRNVED----LSGGELQRVAIAATLLRD 489
Query: 1135 PMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191
I LLDE ++ LD V A+ +M +T +VV H + I +D ++V + G+
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GE 548
Query: 1192 VVEQGTQSSLLSMGNG 1207
G + M G
Sbjct: 549 PGRHGRALPPMGMREG 564
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-29
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 25/192 (13%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
IG+VG +G GK+T + +L +P +G + D K Q + E L S
Sbjct: 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG--TVYE--LLS 439
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+ ++K + + D Y+ V LSGG+ QR+AI
Sbjct: 440 KIDSSKL---NSNFYKTELLKP----------LGIIDLYDRNVED----LSGGELQRVAI 482
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLSTIRK-ADLI 521
A L+RD I LLDE ++ LD E V A+ +T +++ H + I +D +
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542
Query: 522 GVLQSGRVIESG 533
V + G G
Sbjct: 543 IVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-28
Identities = 47/241 (19%), Positives = 102/241 (42%), Gaps = 22/241 (9%)
Query: 302 FEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVIS 361
F I ++N +++ + + G F + +G+VG +G+GK+T +
Sbjct: 81 FNAIS---IVNLPEQLDEDCVHRYGVNAFVLYRLPIV-KDGM-VVGIVGPNGTGKTTAVK 135
Query: 362 LL-----ERFYD-PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK 415
+L + + ++ + +LQ + R + G + + + GK
Sbjct: 136 ILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195
Query: 416 PGASMETVVKAAQAANVHDFIMKLN--DGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473
++ K + + + +L + + ++ Q LSGG+ QR+AIA AL+R
Sbjct: 196 VRELLK---KVDEVGKFEEVVKELELENVLDRELHQ----LSGGELQRVAIAAALLRKAH 248
Query: 474 ILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIE 531
DE +S LD V + + A++G+ ++++ H L+ + +D+I V+ +
Sbjct: 249 FYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
Query: 532 S 532
Sbjct: 309 G 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 36/232 (15%)
Query: 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTII-----GLIERFYD-PQS 1034
++ Y ++ G V +VG +G+GK+T + LI + S
Sbjct: 95 EDCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 1035 GSVMVDERN---IKSYNLRKLRSCIALVSQE------PTLFAGTIRQNIVYGKEVATEAE 1085
++ +++Y R I V + P G +R+ + EV E
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEE 211
Query: 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEAT 1144
+ K L N +R + QLSGG+ QR+A+A A+L+ DE +
Sbjct: 212 VVKELELENV---------------LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256
Query: 1145 SALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVE 1194
S LD V + ++ G+ +VV H L+ + +D I V+ V
Sbjct: 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 6e-30
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 27/204 (13%)
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
+ ++G +G+GK+T+I LL P +G + + K Q + ++ LF
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPG--TVRQ--LFF 435
Query: 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
I+ L + ++++D + +V LSGG+ QR+AI
Sbjct: 436 KKIRGQFLNPQ---------FQTDVVK----PLRIDDIIDQEVQ----HLSGGELQRVAI 478
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLSTIRK-ADLI 521
AL I L+DE ++ LD+E I + + +T I+ H AD +
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV 538
Query: 522 GVLQSGRVIESGSH---DVLMQMN 542
V + + + +L N
Sbjct: 539 IVFEGIPSKNAHARAPESLLTGCN 562
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-29
Identities = 48/259 (18%), Positives = 92/259 (35%), Gaps = 34/259 (13%)
Query: 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014
R + A+ED++ + + + + + ++G+
Sbjct: 330 RTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF---VLNVEEGEFSDSEILVMMGE 386
Query: 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQ 1072
+G+GK+T+I L+ P G + + N+ S +K IA LF IR
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQD-IPKLNV-SMKPQK----IAPKFPGTVRQLFFKKIR- 439
Query: 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ-LSGGQKQRIALARAV 1131
+ + I ++ VQ LSGG+ QR+A+ A+
Sbjct: 440 -----GQFLNPQFQTDVVKPLRIDDII------------DQEVQHLSGGELQRVAIVLAL 482
Query: 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIK 1188
I L+DE ++ LDS + + + + + +T +V H AD ++V +
Sbjct: 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542
Query: 1189 NGKVVEQGTQSSLLSMGNG 1207
+ S+ G
Sbjct: 543 GIPSKN-AHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 5e-26
Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 38/234 (16%)
Query: 327 EIEFKDVDFSYPTRP----DTPTI------GLVGSSGSGKSTVISLL--------ERFYD 368
V Y PT GLVG++G GKST + +L RF D
Sbjct: 77 TNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDD 136
Query: 369 PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQ 428
P + ++ + +LQ ++ + IK + P A V K +
Sbjct: 137 PPEWQEIIKYFRGSELQ----NYFTKMLEDDI---KAIIKPQYVDNIPRAIKGPVQKVGE 189
Query: 429 AANVHDFIMKLNDGYETKVGQFGV---------QLSGGQKQRIAIARALIRDPKILLLDE 479
+ + + + + +LSGG+ QR AI + +++ + + DE
Sbjct: 190 LLKLRMEKSPED--VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 480 ATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIE 531
+S LD + + + + + +I + H LS + +D + ++ +
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 44/234 (18%), Positives = 84/234 (35%), Gaps = 27/234 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIE----RF 1029
+V Y + + G+ + LVG +G GKST + G + RF
Sbjct: 78 NLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 1030 YDPQSGSVMVDE---RNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIVYGKE-VATE 1083
DP ++ +++Y + L I + + I+ + E +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDE 1142
E V E+ R + +LSGG+ QR A+ + ++ + + DE
Sbjct: 195 MEKSPEDVKRYIKIL--QLENVLK-----RDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 1143 ATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTI-QKADNIVVIKNGKVVE 1194
+S LD + + ++ + + V H LS + +D + +I V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 50/234 (21%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ ++N+ F Y + +F+ L + G +A++GQ+G GKST++ L+ + P G +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVYG---------------KEVA 1081
V + I V Q + FA ++ ++ G +VA
Sbjct: 63 EVYQS-------------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLD 1141
+A + + A + LSGGQ+Q I +ARA+ ++LLD
Sbjct: 110 MQA-LDYLNLTHLAKREFT---------------SLSGGQRQLILIARAIASECKLILLD 153
Query: 1142 EATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192
E TSALD A++++V L + T V H+ + + A+ +++
Sbjct: 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 320 TLAYLRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379
Y F+ ++F + ++G +G GKST++ LL + P++G I +
Sbjct: 11 GFYYQAENFLFQQLNFDLN---KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ- 66
Query: 380 KIKKLQLKWLRSQMGLVNQEPIL-FSTSIKENILIG---------KPGASMETVVKAA-Q 428
+G V Q F+ S+ + +L+G KP + V A
Sbjct: 67 ------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
N+ + +F LSGGQ+Q I IARA+ + K++LLDE TSALD +
Sbjct: 115 YLNLTHLAKR----------EFT-SLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163
Query: 489 ERIVQEALDQ--ASQGRTMIIIAHRLST-IRKADLIGVLQSGRVIESGSHDVL 538
+ IV L SQ T++ H+ + + A+ +L + ++L
Sbjct: 164 QDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNIL 216
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 29/232 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE V YP +G++ +I G+ V L+G SGSGK+TI+ LI P G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEV--ATEAEIRKAAVLAN 1094
+ + + +K R+ + LV Q LF T+ N+ +G + E+
Sbjct: 73 WIGGKRVTDLPPQK-RN-VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARV---- 126
Query: 1095 AHEFISSTE-DGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
E + + Y R +LSGGQ+QR+ALARA+ P +LL DE +A+D+
Sbjct: 127 -RELLRFMRLESY----ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181
Query: 1153 NLVQEALEKM--MVGRTCVVVAHRLSTIQK-----ADNIVVIKNGKVVEQGT 1197
++ + ++ +G T V V H Q+ AD ++V+ G V + GT
Sbjct: 182 RELRTFVRQVHDEMGVTSVFVTHD----QEEALEVADRVLVLHEGNVEQFGT 229
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 12/142 (8%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G SGSGK+T++ L+ P KG++ + G ++ L + + +GLV Q LF +
Sbjct: 46 LLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMT 103
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDF--IMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+ +N+ G + V K A V + M+L + Y +F +LSGGQ+QR+A+
Sbjct: 104 VYDNVSFG---LREKRVPKDEMDARVRELLRFMRL-ESYA---NRFPHELSGGQQQRVAL 156
Query: 465 ARALIRDPKILLLDEATSALDA 486
ARAL P++LL DE +A+D
Sbjct: 157 ARALAPRPQVLLFDEPFAAIDT 178
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 40/229 (17%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++++ Y D+ + + +T+ IE G V G +G GK+T++ I + P G +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNI-----VYGKEVATEA--EIRKA 1089
+ + + K++ I + +E + ++ + +YG +V + ++
Sbjct: 67 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1090 AVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149
+ + + + +LS G +R+ LA +L N I +LD+ A+D
Sbjct: 122 VEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 1150 ASENLVQEALEKMMVGRTCVVVAHRLST--IQKADNIVVIKNGKVVEQG 1196
S++ V +++ +++ + V++ S + D +
Sbjct: 167 DSKHKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 40/196 (20%), Positives = 88/196 (44%), Gaps = 29/196 (14%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ G +G GK+T++ + + P+KG I+ +G I K+ + ++ + +E I+
Sbjct: 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIFFLPEEIIVPRK 92
Query: 406 -SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQK 459
S+++ + L G + ++ A ++ V D KL +LS G
Sbjct: 93 ISVEDYLKAVASLYGVKV-NKNEIMDALESVEVLDLKKKLG------------ELSQGTI 139
Query: 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST--IRK 517
+R+ +A L+ + +I +LD+ A+D +S+ V +++ + + + ++II S +
Sbjct: 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII---SSREELSY 196
Query: 518 ADLIGVLQSGRVIESG 533
D+ L
Sbjct: 197 CDVNENLHKYSTKIDK 212
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 47/207 (22%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST- 405
GL+G +G+GK+T + ++ P G + + G + + + +R + + +E +
Sbjct: 45 GLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNM 103
Query: 406 SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460
E + + +E +V+ A I L + + +V + S G +
Sbjct: 104 QGIEYLRFVAGFYASSSSEIEEMVERATE------IAGLGEKIKDRVSTY----SKGMVR 153
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTMIIIAHRLSTIRK-A 518
++ IARAL+ +P++ +LDE TS LD + R V++ L Q + +G T+++ +H + +
Sbjct: 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLC 213
Query: 519 DLIGVLQSGRVIESGSHDVLMQMNNGE 545
D I ++ +G ++E+G+ + L + +
Sbjct: 214 DRIALIHNGTIVETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-26
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 22/239 (9%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ +K++ + I KG++ +IE G+ L+G +G+GK+T + +I P SG V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNI-----VYGKEVATEAEIRKAAV 1091
V +N+ ++R I+ + +E + + + Y ++E E
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS-SSEIEEMVERA 130
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
I+ + S G +++ +ARA++ NP + +LDE TS LD +
Sbjct: 131 TE-----IAGLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 1152 ENLVQEALEKMMV-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGG 1208
V++ L++ G T +V +H + ++ D I +I NG +VE GT L
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 240
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 999 LTLKIEAGKT-VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057
L + E G+ L+G +G+GKS + LI P G V ++ +I L R I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIG 73
Query: 1058 LVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116
V Q+ LF ++ +NI YG E + E + G + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV--REMAEKL-----GIAHLLDRKPAR 126
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKM--MVGRTCVVVAHR 1174
LSGG++QR+ALARA++ P +LLLDE SA+D ++ ++ E L + + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 1175 LSTIQK-----ADNIVVIKNGKVVEQGT 1197
AD + V+ NG++VE+G
Sbjct: 187 ----LIEAAMLADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
L+G +G+GKS + L+ P +G + L+G I L + R +G V Q+ LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 407 IKENI---LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIA 463
+ NI L + V+ + + + +LSGG++QR+A
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAE------KLGI-AHLLDR---KPARLSGGERQRVA 136
Query: 464 IARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAHRLS---TIRKA 518
+ARAL+ P++LLLDE SA+D +++ ++ E L Q ++ + H L + A
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML--A 194
Query: 519 DLIGVLQSGRVIESGS 534
D + V+ +GR++E G
Sbjct: 195 DEVAVMLNGRIVEKGK 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-26
Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 30/235 (12%)
Query: 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
+ + ++ S+ + P + ++L ++ G+ + ++G SG GK+T++ + F P SG
Sbjct: 4 ALHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 1037 VMVDERNIKSYNLR---KLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRK-- 1088
+ + + I S N + R + + QE LF T+ +NI YG A+ R+
Sbjct: 61 ISLSGKTIFSKNTNLPVRERR-LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI 119
Query: 1089 AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALD 1148
A+L IS Y +LSGGQ+QR ALARA+ +P ++LLDE SALD
Sbjct: 120 EAMLELTG--ISELAGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFSALD 170
Query: 1149 SASENLVQEALEKMM--VGRTCVVVAH----RLSTIQKADNIVVIKNGKVVEQGT 1197
++E + + G++ V V+H L AD I V+K G++++ +
Sbjct: 171 EQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 2e-20
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 23/199 (11%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL---RSQMGLVNQEPILF- 403
++G+SG GK+T++ L F P G I L G I + L ++G + QE +LF
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFP 93
Query: 404 STSIKENILIGKPGASMETVVKAAQAANVHDF--IMKLNDGYETKVGQFGVQLSGGQKQR 461
++ NI G A + + + + + + +LSGGQ+QR
Sbjct: 94 HLTVYRNIAY---GLGNGKGRTAQERQRIEAMLELTGI-SELAGR---YPHELSGGQQQR 146
Query: 462 IAIARALIRDPKILLLDEATSALDAE-SERIVQEALD-QASQGRTMIIIAH----RLSTI 515
A+ARAL DP+++LLDE SALD + +I ++ + + G++ + ++H L
Sbjct: 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY- 205
Query: 516 RKADLIGVLQSGRVIESGS 534
AD I V++ GR++++ S
Sbjct: 206 --ADRIAVMKQGRILQTAS 222
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 38/234 (16%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++++ + L+LK+E+G+ ++G +G+GK+ + LI F+ P SG +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1038 MVDERNIKSY--NLRKLRSCIALVSQEPTLFAG-TIRQNIVYG---KEVATEAEIRKAAV 1091
++D +++ IA V Q +LF +++N+ +G K++ + A
Sbjct: 58 LLDGKDVTDLSPEKHD----IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 1092 LANAHEFISSTEDGYDTYCGERGV-QLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
+R LSGG++QR+ALARA++ NP ILLLDE SALD
Sbjct: 114 DLKIEHL------------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 1151 SENLVQEALEKM--MVGRTCVVVAHRLSTIQK-----ADNIVVIKNGKVVEQGT 1197
++ +E L + T + + H Q AD I V+ +GK+++ G
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHD----QTEARIMADRIAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-19
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406
++G +G+GK+ + L+ F+ P G ILLDG + L + + + V Q LF +
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMN 88
Query: 407 IKENILIG--KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464
+K+N+ G V +K+ + + + LSGG++QR+A+
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTAR------DLKI-EHLLDR---NPLTLSGGEQQRVAL 138
Query: 465 ARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGRTMIIIAH----RLSTIRKA 518
ARAL+ +PKILLLDE SALD ++ +E L T++ I H A
Sbjct: 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIM---A 195
Query: 519 DLIGVLQSGRVIESGS 534
D I V+ G++I+ G
Sbjct: 196 DRIAVVMDGKLIQVGK 211
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 5e-22
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 37/239 (15%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I +KNV + + + + IE G+ ++G SG+GK+T + +I P +G +
Sbjct: 4 IIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1038 MVDERNIKSYNLRKL----RSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRK-- 1088
D+R + S + R I +V Q L+ T +NI + ++ EIRK
Sbjct: 63 YFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1089 ---AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
A +L +LSG Q+QR+ALARA++K+P +LLLDE S
Sbjct: 122 EEVAKIL------------DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 1146 ALDSASENLVQEALEKM--MVGRTCVVVAHRLSTIQK-----ADNIVVIKNGKVVEQGT 1197
LD+ + + ++++ +G T +VV+H AD + V+ GK+V+ G
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHD----PADIFAIADRVGVLVKGKLVQVGK 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ---MGLVNQEPIL 402
G++G SG+GK+T + ++ P G + D + + + +G+V Q L
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 403 FST-SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456
+ + ENI + + V+ + A I+ ++ + LSG
Sbjct: 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVE--EVAK----ILDIHHVLNHFPRE----LSG 143
Query: 457 GQKQRIAIARALIRDPKILLLDEATSALDA 486
Q+QR+A+ARAL++DP +LLLDE S LDA
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDA 173
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 9e-20
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN--QEPILF 403
++G +GSGKST+I+++ F +G + + I + G+V Q P
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-PAELYHYGIVRTFQTPQPL 94
Query: 404 ST-SIKENILIGKPGASMETVVKAA--------------QAANVHDFIMKLNDGYETKVG 448
++ EN+LIG E+ + + +A + +F +KL+ Y+ K G
Sbjct: 95 KEMTVLENLLIG-EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF-LKLSHLYDRKAG 152
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL-DAESERIVQEALDQASQGRTMII 507
+ LSGGQ + + I RAL+ +PK++++DE + + + I L+ ++G T +I
Sbjct: 153 E----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208
Query: 508 IAHRLSTIRK-ADLIGVLQSGRVIESGS 534
I HRL + D + V+ +G++I G
Sbjct: 209 IEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 54/240 (22%)
Query: 994 MIFKGLT------LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI--- 1044
F + + G ++G +GSGKST+I +I F G V + ++I
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 1045 KSYNLRKLRSCIALVSQEPTLFAG-TIRQNI---------------VYGKEVATEAEIRK 1088
+ L I Q P T+ +N+ Y K + E E+ +
Sbjct: 75 EPAELYHYG--IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE 132
Query: 1089 AA--VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE--A- 1143
A +L EF+ + +LSGGQ + + + RA++ NP ++++DE A
Sbjct: 133 KAFKIL----EFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1144 -----TSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ + L + G T +++ HRL + D++ V+ NG+++ +G
Sbjct: 184 VAPGLAHDIFNHVLELKAK-------GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-18
Identities = 80/245 (32%), Positives = 119/245 (48%), Gaps = 56/245 (22%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I+L+N+ + + + LKI+ G+ +AL+G SGSGKST++ I Y P SG +
Sbjct: 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 1038 MVDERNIKSYNLR-KLRSCIALVSQE----PTLFAGTIRQNIVYGKEVA--TEAEIRK-- 1088
DE+++ L K R+ + LV Q P + T+ +NI + E+ EI K
Sbjct: 61 YFDEKDVT--ELPPKDRN-VGLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDKKV 114
Query: 1089 ---AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
A +L D QLSGGQ+QR+A+ARA++K P +LLLDE S
Sbjct: 115 REVAKML------------HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162
Query: 1146 ALDSA------SE--NLVQEALEKMMVGRTCVVVAHRLSTIQK-----ADNIVVIKNGKV 1192
LD+ +E L +E +G T V V H Q AD I VI+ G++
Sbjct: 163 NLDALLRLEVRAELKRLQKE------LGITTVYVTHD----QAEALAMADRIAVIREGEI 212
Query: 1193 VEQGT 1197
++ GT
Sbjct: 213 LQVGT 217
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 18/145 (12%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-S 406
L+G SGSGKST++ + Y P G I D + +L K R+ +GLV Q L+ +
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK-DRN-VGLVFQNWALYPHMT 91
Query: 407 IKENI-----LIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQR 461
+ +NI L P ++ V+ ++ ++ Q LSGGQ+QR
Sbjct: 92 VYKNIAFPLELRKAPREEIDKKVREVAK------MLHIDKLLNRYPWQ----LSGGQQQR 141
Query: 462 IAIARALIRDPKILLLDEATSALDA 486
+AIARAL+++P++LLLDE S LDA
Sbjct: 142 VAIARALVKEPEVLLLDEPLSNLDA 166
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 6e-16
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 63/249 (25%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQ 1033
+ L +V+ + + + ++L+++ G+ + L+G SG GK+T I GL E +P
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-E---EPS 56
Query: 1034 SGSVMVDER--NIKSYNLR---KLRSCIALVSQE----PTLFAGTIRQNIVYGKEVA--T 1082
G + + ++ + K R IA+V Q P + T+ NI + ++
Sbjct: 57 RGQIYIGDKLVADPEKGIFVPPKDRD-IAMVFQSYALYPHM---TVYDNIAFPLKLRKVP 112
Query: 1083 EAEIRK-----AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137
EI + A +L G + +LSGGQ+QR+AL RA+++ P +
Sbjct: 113 RQEIDQRVREVAELL------------GLTELLNRKPRELSGGQRQRVALGRAIVRKPQV 160
Query: 1138 LLLDEATSALDSASENL-VQ-----EALEKMMVGRTCVVVAHRLSTIQK-----ADNIVV 1186
L+DE S LD+ L V+ + L++ + G T + V H Q D I V
Sbjct: 161 FLMDEPLSNLDAK---LRVRMRAELKKLQRQL-GVTTIYVTHD----QVEAMTMGDRIAV 212
Query: 1187 IKNGKVVEQ 1195
+ G V++Q
Sbjct: 213 MNRG-VLQQ 220
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 56/167 (33%)
Query: 348 LVGSSGSGKSTV---ISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
L+G SG GK+T I+ LE +P +G I + LV
Sbjct: 34 LLGPSGCGKTTTLRMIAGLE---EPSRGQIYIGDK---------------LVADPEKGIF 75
Query: 405 T--------------------SIKENI-----LIGKPGASMETVVKAAQAANVHDFIMKL 439
++ +NI L P ++ V+ + A ++ L
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR--EVAE----LLGL 129
Query: 440 NDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
+ K + LSGGQ+QR+A+ RA++R P++ L+DE S LDA
Sbjct: 130 TELLNRKPRE----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 7e-16
Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 50/242 (20%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I + N+ + G++ +++ G+ VAL+G SG GK+T + ++ Y P SG +
Sbjct: 4 IRVVNLKKYFGKVK---AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 1038 MVDERNIKSYNLR-KLRSCIALVSQE----PTLFAGTIRQNIVYGKEVA--TEAEIRK-- 1088
D+ + ++ K R + +V Q P + T+ +NI + ++ E+ K
Sbjct: 61 YFDDVLVN--DIPPKYRE-VGMVFQNYALYPHM---TVFENIAFPLRARRISKDEVEKRV 114
Query: 1089 ---AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
A L D + QLSGGQ+QR+ALARA++K P +LL DE S
Sbjct: 115 VEIARKL------------LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162
Query: 1146 ALDSASENL-VQEALE--KM--MVGRTCVVVAHRLSTIQK-----ADNIVVIKNGKVVEQ 1195
LD+ L + E + +G T V V H Q A I V GK+V+
Sbjct: 163 NLDAN---LRMIMRAEIKHLQQELGITSVYVTHD----QAEAMTMASRIAVFNQGKLVQY 215
Query: 1196 GT 1197
GT
Sbjct: 216 GT 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 52/162 (32%)
Query: 348 LVGSSGSGKSTV---ISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP---- 400
L+G SG GK+T ++ + P G I D LVN P
Sbjct: 34 LLGPSGCGKTTTLLMLAGIY---KPTSGEIYFDDV---------------LVNDIPPKYR 75
Query: 401 ---ILFST-------SIKENI-----LIGKPGASMET-VVKAAQAANVHDFIMKLNDGYE 444
++F ++ ENI +E VV+ A+ + +++ +
Sbjct: 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR-------KLLIDNLLD 128
Query: 445 TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486
K Q LSGGQ+QR+A+ARAL++ PK+LL DE S LDA
Sbjct: 129 RKPTQ----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 65/256 (25%)
Query: 969 DIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIG 1024
+IE ++L+N+ + + L L I+ G+ + L+G SG GK+T I G
Sbjct: 3 NIEVIKMVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59
Query: 1025 LIERFYDPQSGSVMVDERNIKSYNLR-KLRSCIALVSQE----PTLFAGTIRQNIVYGKE 1079
L E +P G + +R++ L K R+ I++V Q P + T+ +NI + +
Sbjct: 60 L-E---EPTEGRIYFGDRDVT--YLPPKDRN-ISMVFQSYAVWPHM---TVYENIAFPLK 109
Query: 1080 VA--TEAEIRK-----AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132
+ + EI K A +L + QLSGGQ+QR+A+ARA++
Sbjct: 110 IKKFPKDEIDKRVRWAAELL------------QIEELLNRYPAQLSGGQRQRVAVARAIV 157
Query: 1133 KNPMILLLDEATSALDSA------SE--NLVQEALEKMMVGRTCVVVAHRLSTIQK---- 1180
P +LL+DE S LD+ +E L Q+ + T + V H Q
Sbjct: 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK------LKVTTIYVTHD----QVEAMT 207
Query: 1181 -ADNIVVIKNGKVVEQ 1195
D I V+ G + Q
Sbjct: 208 MGDRIAVMNRG-QLLQ 222
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Query: 348 LVGSSGSGKSTV---ISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS 404
L+G SG GK+T I+ LE +P +G I + L K M V Q ++
Sbjct: 42 LLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDVTYLPPKDRNISM--VFQSYAVWP 96
Query: 405 T-SIKENI-----LIGKPGASMET-VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG 457
++ ENI + P ++ V AA+ ++++ + Q LSGG
Sbjct: 97 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAE-------LLQIEELLNRYPAQ----LSGG 145
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDA 486
Q+QR+A+ARA++ +P +LL+DE S LDA
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 3e-15
Identities = 94/643 (14%), Positives = 181/643 (28%), Gaps = 204/643 (31%)
Query: 288 LSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDF---SYPTRPDTP 344
+ I + A + + + S+ E + + E+ + F T P
Sbjct: 51 IDHIIMSKDAVSGTLRLFW---TLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILF 403
++ I +R Y+ N + + + +LQ LR L+ P
Sbjct: 106 SMM--------TRMYIEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQ--ALLELRP--- 149
Query: 404 STSIKENILI-GKPGASMETVVKAAQAANVHDFIMKLNDG-YETKVGQ------------ 449
+N+LI G G+ +T V A + K++ + +
Sbjct: 150 ----AKNVLIDGVLGSG-KTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 450 -FGVQL----------SGGQKQRIAIARALIRD-------PKILL-LDEATSALDAESER 490
Q+ S K RI +A +R LL L + ++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAK 257
Query: 491 IVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEG-GAY 549
A + + + ++ T R + L + M + E
Sbjct: 258 AW-NAFNLSC--KILL-------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 550 SKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQT---PHTPINEGSSYQNSPIYPLSP 606
K + + + EV + NP S+++ T N +++ L+
Sbjct: 308 LKYLDCRPQDLPREVLTT--NPR----RLSIIAESIRDGLATWDN----WKHVNCDKLTT 357
Query: 607 TFSIS--------MTGSFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAIEW-------- 650
S F SV F ++H P+ LL L+ W
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSV-------FPPSAHIPTILLSLI------WFDVIKSDV 404
Query: 651 --------KRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLG 702
K +L+ + I + K+K E
Sbjct: 405 MVVVNKLHKYSLVEKQ--------PKESTISI------PSIYLELKVKLENE-------- 442
Query: 703 LAFLTLIANLIQHYN-------------------FAIMGEHLV---QRVREKMLEKIFTF 740
L +++ HYN ++ +G HL R + +F
Sbjct: 443 ---YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-L 498
Query: 741 EIGWFDQD-ENTSAAICAR-----LANEAHLVRSFIAD------RMSLLIQVFFSASLAY 788
+ + +Q + S A A + + +I D R+ I F
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL---PKI 555
Query: 789 TLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQ 831
+L+ + ++ IA+ + F E K+ Q
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFE----------EAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 102/695 (14%), Positives = 191/695 (27%), Gaps = 199/695 (28%)
Query: 577 HHSLMSAQTPHTPINEGSSYQNSPIYP-LSPTFSISMTGSFQMHSVENQ-----NDKNFH 630
HH M +T E YQ I F +F V++ + +
Sbjct: 3 HHHHMDFET-----GE-HQYQYKDILSVFEDAF----VDNFDCKDVQDMPKSILSKEEID 52
Query: 631 DNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIY--------PSYAYCLGSVVSAY- 681
S ++ LR L L S + +Y + + + +
Sbjct: 53 HIIMSKDAVSGTLR---------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 682 --------FIKDDSKLKSE---------TRLYCLIFLGLAFLTLIANLIQHYNFAI--M- 721
+I+ +L ++ +RL + L A L L N I +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVLIDGVL 159
Query: 722 --GEH-LVQRV-REKMLEKIFTFEIGWFD-QDENTSAAICARLANEAHLVRSFI---ADR 773
G+ + V ++ F+I W + ++ N+ + L + + +D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 774 MSLLIQVFFSASLA---------YTLSLLV---TWRVAIVMIAVQPLNIGCFYSRSVLMK 821
S + S Y LLV N+ C +L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSC----KILL- 270
Query: 822 SMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGP--KKESIKQSWFS 879
TT + +T F S + + E
Sbjct: 271 --------------------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------ 304
Query: 880 GIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMST-GKNIADAGSMTSD 938
L ++L L P+++ +S ++I D G T D
Sbjct: 305 --SLLL-KYLDCRPQDL---------------PREVLTTNPRRLSIIAESIRD-GLATWD 345
Query: 939 ------IAKGSSAIRTIFTILD----RKS----EIDPEDPKASEDIEEPTKGFIELKNVF 984
K ++ I + +L+ RK + P I L ++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS----AHIPTIL-----LSLIW 396
Query: 985 FSYPSRPDQMIFKGLTLKIEAGKTVALV-GQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043
F ++ L +LV Q +I + +
Sbjct: 397 FDVIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 1044 IKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVY-------GKEVAT-----------EAE 1085
+ YN+ K L+ P +I + + + E +
Sbjct: 450 VDHYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
IR + NA I +T Y + + + + +R L A+L L +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYER--LVNAILDF----LPKIEEN 558
Query: 1146 ALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK 1180
+ S +L++ AL M AH+ +Q+
Sbjct: 559 LICSKYTDLLRIAL--MAEDEAIFEEAHK--QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 67/399 (16%), Positives = 124/399 (31%), Gaps = 99/399 (24%)
Query: 851 FSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLV 910
+ +D IL +F + + + L+ I I+
Sbjct: 16 YQYKD-ILSVFEDAF-------VDNFDCKDVQDMPKSILSKEEID-------HIIMSKDA 60
Query: 911 SPKQLFQAFFLLMSTGKNIADA---GSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKAS 967
+ F+ L+S + + + + S I+T + P
Sbjct: 61 V-SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-----------EQRQP--- 105
Query: 968 EDIEEPTKGFIELKN-------VFFSYP-SRPDQM--IFKGLTLKIEAGKTVALVGQSGS 1017
T+ +IE ++ VF Y SR + + L L++ K V + G GS
Sbjct: 106 ---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGS 161
Query: 1018 GKSTIIGLIERFYDPQS-----------GSVMVDERNIKSYNLRKLRSCIALVSQEPTLF 1066
GK+ + + Y Q + E ++ L+KL I +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDH 219
Query: 1067 AGTIRQNIVYGKEVATEAEIRKAA-----VLANAHEFISSTE--DGYDTYC------GER 1113
+ I+ I + K VL N + + + + ++ C +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTRFK 275
Query: 1114 GV--QLSGGQKQRIALARAVLKNPMILLLDEATS----ALDSASENLVQEALEKM----- 1162
V LS I+L + M L DE S LD ++L +E L
Sbjct: 276 QVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 1163 MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSL 1201
++ + L+T ++ K ++E SSL
Sbjct: 332 IIAE---SIRDGLATWDNWKHVNCDKLTTIIE----SSL 363
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 6e-04
Identities = 78/504 (15%), Positives = 134/504 (26%), Gaps = 147/504 (29%)
Query: 57 EAVDKVPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDA 116
V + + W + +E L+ +L Q + +++ SS NI
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS------NIKLRI 227
Query: 117 HSIQDAV-----AEKIPNCL---------AHLTSF-IGS-IL-------VAFLLSWRLAL 153
HSIQ + ++ NCL +F + IL V LS A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS---AA 284
Query: 154 AALPFSLLFIVPGI-------VFGKVL----KDLGAQGKDAYEAAGGIAEQAISSIRTVY 202
SL + + K L +DL + + +S I
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-------VLTTNPRRLSIIAESI 337
Query: 203 SFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGSMGMTYGAWA-FQS----------- 250
T + + I+ L L + + F
Sbjct: 338 R--DGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 251 -WVGSV-----LVTERGEKGGLV---FVAGICTILGGVGIMSALPNLSFISQATTAATRI 301
W + +V + K LV +I P++ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----------PSIYLELKVKLENEYA 444
Query: 302 F--EMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTPTIG--LVGSSGSGKS 357
++D + + D YL +S+ IG L +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYF------YSH--------IGHHLKNIEHPER- 489
Query: 358 TVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG 417
++L + LD ++L ++ ++ G
Sbjct: 490 --MTLFRMVF--------LD--------FRFLEQKI-------------RHDSTAWNASG 518
Query: 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477
+ + T+ Q +I + YE V L I LI LL
Sbjct: 519 SILNTL---QQLKFYKPYICDNDPKYERLVNAILDFLPK-------IEENLICSKYTDLL 568
Query: 478 DEATSALDAESERIVQEALDQASQ 501
AL AE E I +EA Q +
Sbjct: 569 R---IALMAEDEAIFEEAHKQVQR 589
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 31/222 (13%)
Query: 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055
KG+ LK+ G+ V L+G +G+GK+T + I Q G ++ + ++I + + R
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 1056 IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY--CGE 1112
IALV + +F T+ +N++ G A + E + + E
Sbjct: 83 IALVPEGRRIFPELTVYENLMMG-----------AYNRKDKEGIKRDLEWIFSLFPRLKE 131
Query: 1113 RGVQ----LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV---- 1164
R Q LSGG++Q +A+ RA++ P +L++DE + L + LV E E +
Sbjct: 132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKINQE 188
Query: 1165 GRTCVVV---AHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203
G T ++V A ++ A V++ G++V +G S LL
Sbjct: 189 GTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 1e-13
Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 35/210 (16%)
Query: 348 LVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP---ILFS 404
L+G++G+GK+T +S + KG I+ +G I + ++MG+ P +F
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP-AHVINRMGIA-LVPEGRRIFP 94
Query: 405 T-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET------KVGQFGVQLSGG 457
++ EN+++G A + L + ++ Q G LSGG
Sbjct: 95 ELTVYENLMMG-----------AYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143
Query: 458 QKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ----ASQGRTMIII---AH 510
++Q +AI RAL+ PK+L++DE + L + +V E + +G T++++ A
Sbjct: 144 EQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKINQEGTTILLVEQNAL 200
Query: 511 RLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
++ A VL++G+++ G L+
Sbjct: 201 G--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-13
Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 28/214 (13%)
Query: 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKS 1020
++ + ++ +L N FS +++ L+++ + + G +G GKS
Sbjct: 417 VDNIPVGPNFDDEEDEGEDLCNCEFSLA-YGAKILLNKTQLRLKRARRYGICGPNGCGKS 475
Query: 1021 TIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQE-PTLFAGTIRQNIVYGKE 1079
T++ I + + V + + T + V+
Sbjct: 476 TLMRAIANGQVDG----FPTQEECR----------TVYVEHDIDGTHSDTSVLDFVFESG 521
Query: 1080 VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139
V T+ I+ F T++ LSGG K ++ALARAVL+N ILL
Sbjct: 522 VGTKEAIKD---KLIEFGF---TDEMIAMPISA----LSGGWKMKLALARAVLRNADILL 571
Query: 1140 LDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173
LDE T+ LD+ + + L G T + ++H
Sbjct: 572 LDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 2e-12
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
G+ G +G GKST++ + N +DG ++ + V + +
Sbjct: 464 YGICGPNGCGKSTLMRAI--------ANGQVDGFPTQE------ECRTVYVEHDIDGTHS 509
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
+ + G + +K ++ + LSGG K ++A+A
Sbjct: 510 DTSVLDFVFESGVGTKEAIKDKLIE-----FGFTDEMIAMPIS----ALSGGWKMKLALA 560
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAH 510
RA++R+ ILLLDE T+ LD + + L + G T I I+H
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYL--NTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRL 1175
LSGGQK ++ LA + P +++LDE T+ LD S + +AL++ +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 1176 STIQK-ADNIVVIKNGKVV 1193
+ + + +K+G++
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 7e-10
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRL 512
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL + +G +III H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL-KEFEG-GVIIITHSA 958
Query: 513 STIRK-ADLIGVLQSGRVIESG 533
+ + + ++ GR+ SG
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-07
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 954 DRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVG 1013
+ E +P E ++ K +++ N+ F YP + + + +A++G
Sbjct: 648 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIG 706
Query: 1014 QSGSGKSTIIGLIERFYDPQSGSV 1037
+G+GKST+I ++ P SG V
Sbjct: 707 PNGAGKSTLINVLTGELLPTSGEV 730
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 64/249 (25%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKST----IIGLIERFYDPQ 1033
++L+NV ++ + ++ K + L I G+ V VG SG GKST I GL E
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-E---TIT 56
Query: 1034 SGSVMVDERNIKSYNLR--KLRSCIALVSQE----PTLFAGTIRQNIVYGKEVA--TEAE 1085
SG + + E+ + N R + +V Q P L ++ +N+ +G ++A +
Sbjct: 57 SGDLFIGEKRM---NDTPPAERG-VGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEV 109
Query: 1086 IRK-----AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLL 1140
I + A VL + LSGGQ+QR+A+ R ++ P + LL
Sbjct: 110 INQRVNQVAEVL------------QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 1141 DEATSALDSASENL-VQ-----EALEKMMVGRTCVVVAHRLSTIQK-----ADNIVVIKN 1189
DE S LD+A L VQ L K + GRT + V H Q AD IVV+
Sbjct: 158 DEPLSNLDAA---LRVQMRIEISRLHKRL-GRTMIYVTHD----QVEAMTLADKIVVLDA 209
Query: 1190 GKVVEQ-GT 1197
G V Q G
Sbjct: 210 G-RVAQVGK 217
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-09
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 453 QLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487
LSGGQ+QR+AI R L+ +P + LLDE S LDA
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 57/216 (26%)
Query: 350 GSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG--LVNQEPILFS 404
G +G+GKST +++ Y +G ILLDG I +L R++ G L Q P+
Sbjct: 36 GPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSP-DERARKGLFLAFQYPV--- 90
Query: 405 TSIKENILIGKPGASMETVVKAAQAA------NVHDFI------MK------------LN 440
+ PG ++ ++ A A V +F ++ LN
Sbjct: 91 -EV--------PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN 141
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-A 499
+G+ SGG+K+R I + L+ +P +LDE S LD ++ ++V ++
Sbjct: 142 EGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 500 SQGRTMIIIAH--RLSTIRKADLIGVLQSGRVIESG 533
++I H R+ + D + V+ GRV+ +G
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 37/227 (16%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI---ERFYDPQSGSVMVDERNIKSYN 1048
+ I KG+ L + G+ AL+G +G+GKST+ ++ Y + G +++D NI +
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
Query: 1049 LRKLRSC--IALVSQEPTLFAGT-----IRQ--NIVYGKEVATEA---EIR-KAAVLANA 1095
+ R+ + L Q P G +R G+EV +++ +L
Sbjct: 74 PDE-RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD 132
Query: 1096 HEFIS-STEDGYDTYCGERGVQLSGGQKQR--IALARAVLKNPMILLLDEATSALDSASE 1152
++S +G+ SGG+K+R I L VL+ P +LDE S LD +
Sbjct: 133 ESYLSRYLNEGF-----------SGGEKKRNEI-LQLLVLE-PTYAVLDETDSGLDIDAL 179
Query: 1153 NLVQEALEKMMV-GRTCVVVAH--RLSTIQKADNIVVIKNGKVVEQG 1196
+V + M +V+ H R+ + D + V+ +G+VV G
Sbjct: 180 KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 61/220 (27%)
Query: 350 GSSGSGKST---VISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG--LVNQEPILFS 404
G +GSGKST ++ E Y+ G + G + L R+ G + Q P+
Sbjct: 53 GPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSP-EDRAGEGIFMAFQYPV--- 107
Query: 405 TSIKENILIGKPGASMETVVKAAQAA----------NVHDFI------MK---------- 438
I PG S + ++ A A + DF +
Sbjct: 108 -EI--------PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLT 158
Query: 439 --LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
+N G+ SGG+K+R I + + +P++ +LDE+ S LD ++ ++V + +
Sbjct: 159 RSVNVGF-----------SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 497 DQ-ASQGRTMIIIAH--RLSTIRKADLIGVLQSGRVIESG 533
+ R+ II+ H R+ K D + VL GR+++SG
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI---ERFYDPQSGSVMVDERNI 1044
D+ I +GL+L + G+ A++G +GSGKST+ + E Y+ G+V +++
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDL 86
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 446 KVGQFGVQLSGGQKQRIAIA------RALIRDPKILLLDEATSALDAESERIVQEALDQ- 498
+ LSGG++ + +A L + +L+LDE T LD E R + +++
Sbjct: 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 109
Query: 499 ASQGRTMIIIAHRLSTIRKADLI 521
+ +I+++H AD +
Sbjct: 110 LKKIPQVILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 1116 QLSGGQKQRIALA------RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTC 1168
LSGG++ + LA + +L+LDE T LD + +E+ +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1169 VVVAHRLSTIQKADNIVVI------KNGKVV 1193
++V+H AD+++ I +VV
Sbjct: 117 ILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 453 QLSGGQKQ------RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ-ASQGRTM 505
LSGG++ R+A++ L + +L+LDE T LD E R + +++ + +
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 506 IIIAHRLSTIRKADLI 521
I+++H AD +
Sbjct: 308 ILVSHDEELKDAADHV 323
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 1116 QLSGGQKQRIALA------RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTC 1168
LSGG++ + LA + +L+LDE T LD + +E+ +
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 1169 VVVAHRLSTIQKADNIVVIK 1188
++V+H AD+++ I
Sbjct: 308 ILVSHDEELKDAADHVIRIS 327
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 453 QLSGGQKQRIAIARAL-------IRDPKILLLDEATSALDAESERIVQEALDQASQGRTM 505
LSGG++ +A++ L + ++LDE T LD + E + M
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 506 IIIAHRLSTIRKAD-LIGV 523
III H AD +I V
Sbjct: 340 IIITHHRELEDVADVIINV 358
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 1116 QLSGGQKQRIALA------RAVLKNPM-ILLLDEATSALDSASENLVQEALEKMMVGRTC 1168
LSGG++ +AL+ A++ N + ++LDE T LD + E K+
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1169 VVVAHRLSTIQKADNIVVIK 1188
+++ H AD I+ +K
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 454 LSGGQKQRIAIARAL-IRD---PKI--LLLDEATSALDAESERIVQEALDQ-ASQGRTMI 506
LSGG++ I+I+ A+ + + ++ +DE S+LD E++ + L + + ++
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 507 IIAH 510
I H
Sbjct: 340 FITH 343
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1224 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.93 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.93 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.89 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.85 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.83 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.81 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.81 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.8 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.8 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.78 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.78 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.78 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.78 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.78 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.75 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.73 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.71 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.71 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.7 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.69 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.69 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.69 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.66 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.66 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.66 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.65 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.65 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.65 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.64 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.64 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.63 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.62 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.61 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.6 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.6 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.6 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.6 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.59 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.59 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.59 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.59 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.58 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.58 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.58 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.56 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.56 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.55 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.54 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.53 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.52 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.51 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.51 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.5 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.5 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.5 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.49 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.49 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.48 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.48 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.48 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.47 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.46 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.45 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.45 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.42 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.41 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.39 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.38 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.36 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.35 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.35 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.34 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.34 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.33 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.33 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.32 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.25 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.25 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.24 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.23 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.23 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.23 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.22 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.22 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.21 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.21 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.2 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.2 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.2 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.15 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.15 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.13 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.12 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.07 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.06 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.06 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.06 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.05 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.01 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.99 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.99 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.97 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.96 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.91 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.91 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.91 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.91 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.91 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.89 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.88 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.86 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.85 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.83 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.82 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.82 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.81 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.79 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.75 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.73 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.72 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.69 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.68 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.68 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.67 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.66 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.66 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.65 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.64 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.64 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.62 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.61 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.61 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.61 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.6 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.6 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.59 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.59 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.59 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.58 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.57 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.57 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.56 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.56 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.5 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.48 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.45 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.44 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.43 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.42 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.41 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.41 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.36 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.35 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.34 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.32 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.31 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.29 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.26 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.25 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.22 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.2 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.2 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.2 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.19 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.18 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.17 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.15 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.14 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.13 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.13 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.13 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.12 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.12 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.12 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.06 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.02 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.96 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.95 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.92 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.91 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.9 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.9 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.89 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.87 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.86 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.84 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.81 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.77 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.77 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.75 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.75 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.68 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.67 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.66 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.65 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.64 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.62 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.62 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.61 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.59 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.56 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.55 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.55 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.54 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.44 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.44 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.42 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.42 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.37 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.36 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.34 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.29 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.29 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.28 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.27 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.24 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.23 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.23 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.21 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.18 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.17 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.15 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.14 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.12 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.12 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.1 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.08 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.08 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.07 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.07 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.07 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.06 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.05 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.02 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.94 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.93 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.92 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.9 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.9 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.9 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.9 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.89 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.89 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.86 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.82 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.8 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.79 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.74 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.68 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.67 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.66 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.65 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.63 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.63 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.62 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.6 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.6 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.58 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.58 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.57 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.55 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.52 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.48 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.48 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.47 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.47 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.45 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.42 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.4 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.39 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.38 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.34 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.34 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.31 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.31 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.24 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.22 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.22 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.15 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.13 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.06 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.06 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.05 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.04 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.04 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.03 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.03 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.03 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.03 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.99 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.93 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.9 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.89 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 95.88 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.87 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.87 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.84 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.83 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.82 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.77 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.76 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.72 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.71 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.68 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.67 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.63 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.62 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.57 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.52 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.51 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.47 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.46 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.43 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.42 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.36 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.36 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.34 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.28 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 95.25 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.21 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.2 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.2 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.19 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.19 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.19 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.17 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.17 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.16 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.13 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.08 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.01 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.01 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.0 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.98 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.91 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.9 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.9 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.88 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.85 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-192 Score=1903.23 Aligned_cols=1204 Identities=36% Similarity=0.551 Sum_probs=1022.9
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC------------------ChHHHHH----HH-
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS------------------DISISIE----AV- 59 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------~~~~~~~----~~- 59 (1224)
.+++||+|+.++++++++++++++++++++.|++++++|+++|.+... ....+.. .+
T Consensus 61 ~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (1321)
T 4f4c_A 61 SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVW 140 (1321)
T ss_dssp CHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHH
T ss_pred CHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHH
Confidence 478899999999898899999999999999999999999999875210 0111111 00
Q ss_pred -------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHH
Q 047171 60 -------DK---VPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPN 129 (1224)
Q Consensus 60 -------~~---~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 129 (1224)
.. .+++.+++.++++++..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++++++.++.
T Consensus 141 ~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~---~-~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 141 SYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT---N-HSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH---T-CCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC---C-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0678889999999999999999999999999999999 5 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Q 047171 130 CLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQ 209 (1224)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~ 209 (1224)
++..+++++++++++|+++|+|++++++++|+++++..++.++.++..++.++..+++++.++|.++|||+||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 210 TLKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNL 288 (1224)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 288 (1224)
+.++|.+..++..+...+.....++..+.. ++.++++++++|+|++++.+|.+++|.+++++.++..+..|+..+.+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888877 7778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCc
Q 047171 289 SFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSG 355 (1224)
Q Consensus 289 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsG 355 (1224)
..++++.++++||+++++.+|+++...+.+..+.+.+|+|+|+||+|+||++ ++|+++|||||||||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsG 456 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCc
Confidence 9999999999999999998877654433333344567899999999999753 256699999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 047171 356 KSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435 (1224)
Q Consensus 356 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~ 435 (1224)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+||||||++||+|||+||+|+++++++++||+.+++++|
T Consensus 457 KSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 436 i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
|+.||+||||.+||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.+|||+|+||||++++
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred HHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCC
Q 047171 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSS 595 (1224)
Q Consensus 516 ~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (1224)
++||+|+||++|+|+|+|+|+||+++ +|.|+++++.|......+...+............................
T Consensus 617 ~~aD~Iivl~~G~ive~Gth~eL~~~----~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1321)
T 4f4c_A 617 RNADLIISCKNGQVVEVGDHRALMAQ----QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDD 692 (1321)
T ss_dssp TTCSEEEEEETTEEEEEECHHHHHTT----TCHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HhCCEEEEeeCCeeeccCCHHHHHHh----hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999998 89999999988654332211000000000000000000000000000000
Q ss_pred C-CCCCCCCC-CCCccccccCcccccccc--cccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 047171 596 Y-QNSPIYPL-SPTFSISMTGSFQMHSVE--NQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYA 671 (1224)
Q Consensus 596 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1224)
. ........ .................. ....+...........+++++++.++.|..++++++++.+.+.+.|.++
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 772 (1321)
T 4f4c_A 693 IMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYS 772 (1321)
T ss_dssp -----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHH
T ss_pred hhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 000000000000000000 0000001112233456677788888899999999999999999999999
Q ss_pred HHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCC
Q 047171 672 YCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENT 751 (1224)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~ 751 (1224)
++++.+++.+... .........+|.++|++++++..++.++..+++.+.+.++..++|.++|++++++|++|||..+++
T Consensus 773 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~ 851 (1321)
T 4f4c_A 773 VFFTSFMNVFAGN-PADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNA 851 (1321)
T ss_dssp HHHHHHHHHTSSC-SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGC
T ss_pred HHHHHHHHHhcCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCC
Confidence 9999988876543 223334556788899999999999999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 752 SAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQ 831 (1224)
Q Consensus 752 ~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~ 831 (1224)
+|++++|+++|++.++..++..+..++..++.++++++++++.+|.+++++++++|+++++.+.+.+.......+..+..
T Consensus 852 ~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1321)
T 4f4c_A 852 SGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEF 931 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHH
T ss_pred hHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877776655555455556667
Q ss_pred HHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q 047171 832 SEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVS 911 (1224)
Q Consensus 832 ~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t 911 (1224)
++...++.|++.|+++||+|++|+.+.++|.+..+...+...+.....++...+...+..+..++++|+|+.++..+..+
T Consensus 932 ~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~ 1011 (1321)
T 4f4c_A 932 ADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPT 1011 (1321)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCS
T ss_pred HHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999998887655
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCC
Q 047171 912 --PKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989 (1224)
Q Consensus 912 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~ 989 (1224)
.+.++.++.++.....++..+...++++..+..+++|+.++++.+++.+..... ...++..|.|+|+||+|+||+
T Consensus 1012 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1012 MQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA---GEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp SCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC---SBCCCCCCCEEEEEEEECCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC---CCCCCCCCeEEEEEEEEeCCC
Confidence 444455555555555677778888999999999999999999987765433221 134566789999999999998
Q ss_pred CCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 990 ~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
+++.+||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+||
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1168 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc
Confidence 87888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCC--CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCC
Q 047171 1070 IRQNIVYGK--EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1070 IreNl~~~~--~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaL 1147 (1224)
|||||.||. ++++|+|+++||+.|+++|||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+|
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 999999984 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhcc
Q 047171 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASR 1220 (1224)
Q Consensus 1148 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1220 (1224)
|++||+.||++|++.+++||+|+|||||+|+++||||+|||+|+|+|+|||+||+++ +|.|++||+.|...
T Consensus 1249 D~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~--~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE--KGAYYKLTQKQMTE 1319 (1321)
T ss_dssp TSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC--C-------------
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999997 89999999998754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-168 Score=1673.28 Aligned_cols=1192 Identities=35% Similarity=0.606 Sum_probs=1026.5
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC-----------------h----HHHHHHH--
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD-----------------I----SISIEAV-- 59 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------~----~~~~~~~-- 59 (1224)
.++++++|.+++++.+++++++++++.+++.|+++++++.++|.+.... . ..+....
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 3678899988777777888999999999999999999999998763110 0 0000000
Q ss_pred ------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 047171 60 ------DK---VPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNC 130 (1224)
Q Consensus 60 ------~~---~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 130 (1224)
.. .+++.+++.+.++++..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++.+...+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~---~-~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV---H-DVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS---C-CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc---C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0667788899999999999999999999999999998 5 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 047171 131 LAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQT 210 (1224)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~ 210 (1224)
+..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 211 LKRFSLALRKNMELGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLS 289 (1224)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1224)
.++|.+..++..+...+.....++..++. ++.++++++++|+|++++..|.+++|.++++++++.....|+..+.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888877 77778888999999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcH
Q 047171 290 FISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGK 356 (1224)
Q Consensus 290 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGK 356 (1224)
.++++.++++|++++++.+|+.++..+.+..++...|+|+|+||+|+|+++ ++++++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 999999999999999998776543221222233456889999999999753 2567999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH
Q 047171 357 STVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFI 436 (1224)
Q Consensus 357 STl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i 436 (1224)
|||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||+|||.+|.++.++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhh
Q 047171 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 437 ~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~ 516 (1224)
.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||+++++
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred ccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHHhhhhhcccCCCCCCCCcccccccCCCCCCCCCCCCCCC
Q 047171 517 KADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQSAMRNEVASGSYNPTKSKSHHSLMSAQTPHTPINEGSSY 596 (1224)
Q Consensus 517 ~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1224)
+||+|+||++|+|+++|+|+||++. ++.|.+++..|......+........ ........................
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE----KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNLDMSSKDSGSSLIRRRST 664 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT----TSHHHHHHHHTC---------------------------------------
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC----CCHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccc
Confidence 9999999999999999999999997 89999998766432211100000000 000000000000000000000000
Q ss_pred CCCCCCCCCCCccccccCcccccccccccCccCCCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 047171 597 QNSPIYPLSPTFSISMTGSFQMHSVENQNDKNFHDNSHSPSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGS 676 (1224)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1224)
. ........ .......++..........+++++++.++.|++++++++++++.+++.+.++++++.
T Consensus 665 ~--------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 665 R--------KSICGPHD------QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp ---------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------cccccccc------cccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 000000000011112233456677777888888888899999999999999999999
Q ss_pred HHHHHhccCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHH
Q 047171 677 VVSAYFIKDD-SKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAI 755 (1224)
Q Consensus 677 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l 755 (1224)
+++.+..... .........|.+++++++++..++.+++.+++.+.++++..++|.+++++++++|++|||.+++++|++
T Consensus 731 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l 810 (1284)
T 3g5u_A 731 VVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810 (1284)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHH
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHH
Confidence 8886654332 222334556788888999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 756 CARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGS 835 (1224)
Q Consensus 756 ~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1224)
++|+++|++.++..++..+..++..+..+++++++++.++|.+++++++++|+++++.+...+..+....+.++..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888887778888888888
Q ss_pred hHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Q 047171 836 QLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQL 915 (1224)
Q Consensus 836 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~ 915 (1224)
..+.|++.|+++||+|+.|+.+.++|.+..+...+...+...+.+....+.+.+..+..++++|+|++++..|.++.+.+
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccc
Q 047171 916 FQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMI 995 (1224)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~v 995 (1224)
+.++.++.....++..+....+++.++..+++|+.++++.+++.+....... .+++..|.|+|+||+|+|+++++.++
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~~ 1048 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGL--KPNMLEGNVQFSGVVFNYPTRPSIPV 1048 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCC--CTTTTSCCEEEEEEEBCCSCGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc--cccCCCCcEEEEEEEEECCCCCCCee
Confidence 9888888888888888888888899999999999999988765433221111 22334678999999999987655679
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV 1075 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~ 1075 (1224)
|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++++||||||.+|++||+|||.
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~ 1128 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHT
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHH
Q 047171 1076 YGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153 (1224)
Q Consensus 1076 ~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~ 1153 (1224)
++.+ ..++++++++++.+++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++
T Consensus 1129 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~ 1208 (1284)
T 3g5u_A 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208 (1284)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9865 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhccC
Q 047171 1154 LVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQASRS 1221 (1224)
Q Consensus 1154 ~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~~~ 1221 (1224)
.|++.|++..+|+|+|+||||+++++.||||+||++|+|+|+|+|+||+++ +|.|++||+.|....
T Consensus 1209 ~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp HHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS--CSHHHHHHHHHC---
T ss_pred HHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHHHhhcc
Confidence 999999998889999999999999999999999999999999999999997 899999999886543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-92 Score=946.68 Aligned_cols=579 Identities=34% Similarity=0.537 Sum_probs=534.8
Q ss_pred CCchHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc------------------CchhhhhhHH
Q 047171 634 HSPSSLLRLLRMSA-IEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIK------------------DDSKLKSETR 694 (1224)
Q Consensus 634 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 694 (1224)
..+.+++++++|.. .++..++++++++++.|+..|+++++++.+++.+... ..........
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 44567888888764 4577788899999999999999999999888765321 0011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHH
Q 047171 695 LYCLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRM 774 (1224)
Q Consensus 695 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~ 774 (1224)
.+++.+++++++..++.+++.+++.+.++++..++|.++|++++++|++||| ++++|++++|+++|++.+++.+...+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd--~~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--HTCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999999999999999999999999999999999 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccH
Q 047171 775 SLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQ 854 (1224)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 854 (1224)
..++..++.++++++++++++|.+++++++++|+.+++.+...+..++..++.++..++..+.+.|.+.|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999988899999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 855 DRILDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGS 934 (1224)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~ 934 (1224)
+.+.++|.+..++..+...+.....++...+..++..+..++++|+|++++..|.++++.+++++.++.....|+..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcC
Q 047171 935 MTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014 (1224)
Q Consensus 935 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~ 1014 (1224)
.+..+.++..+++|++++++.+++.+....... .+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGR--KDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCC--CCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccc--cCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEec
Confidence 999999999999999999998776543322211 233456889999999999988888999999999999999999999
Q ss_pred CCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHh
Q 047171 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094 (1224)
Q Consensus 1015 SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~ 1094 (1224)
||||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||+||++||||||.+|+++++++++++||+.|+
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 047171 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174 (1224)
Q Consensus 1095 l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 1174 (1224)
+++||.+||+||||.|||+|.+||||||||||||||++++|+||||||||||||++||+.|+++|+++.+|||+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred chhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhh
Q 047171 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1175 l~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
++++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|.
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL~~~--~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRALMAQ--QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHhCCEEEEeeCCeeeccCCHHHHHHh--hhHHHHHHHhhh
Confidence 999999999999999999999999999997 899999998874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-85 Score=809.18 Aligned_cols=569 Identities=24% Similarity=0.383 Sum_probs=514.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYNFAI 720 (1224)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 720 (1224)
+++++.++.++.+++++++.++.+++.+..|++++.+++....... ......+.++++++.++..++.++..++..+
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888899999999999999987643211 1123345556667777888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 721 MGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAI 800 (1224)
Q Consensus 721 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 800 (1224)
.+.++..++|.+++++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 047171 801 VMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWFSG 880 (1224)
Q Consensus 801 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1224)
++++++|+.+++.+...+..++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..+...+...+......
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888899999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 047171 881 IGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEID 960 (1224)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 960 (1224)
....+..++..+..++++|+|++++..|.++++.+++++.+......|+..+...+..+.++..+++|+.++++.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 88888888888889999999999999999999999999999998899999999999999999999999999998766533
Q ss_pred CCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 961 PEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 961 ~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
+.... . ..++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 328 ~~~~~-~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 403 (587)
T 3qf4_A 328 EADNA-L--ALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403 (587)
T ss_dssp CCTTC-B--CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEES
T ss_pred CCCCc-c--ccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEC
Confidence 21111 1 122345789999999999743 4579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1041 ERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1041 G~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
|+|+++++.+++|++|+||||||++|++||+|||.++.+..++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 404 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgG 483 (587)
T 3qf4_A 404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483 (587)
T ss_dssp SSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHH
T ss_pred CEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhH
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
||||+|||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++++.||||++|++|+|+|+|+|+|
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhhcCCCchhHHHHHHhhcc
Q 047171 1201 LLSMGNGGAYYSLIKMQASR 1220 (1224)
Q Consensus 1201 Ll~~~~~g~y~~l~~~q~~~ 1220 (1224)
|+++ +|.|+++++.|.+.
T Consensus 564 l~~~--~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 564 LLEH--CKPYREIYESQFGN 581 (587)
T ss_dssp HHHH--CHHHHHHHHHHC--
T ss_pred HHhC--CcHHHHHHHHHhcc
Confidence 9986 79999999988653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-84 Score=808.69 Aligned_cols=571 Identities=27% Similarity=0.424 Sum_probs=522.9
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 636 PSSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQH 715 (1224)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 715 (1224)
...+++++++.++.++.+++++++.++.+++.+..|++++.+++....... ......++++++++.++..++.++..
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888888999999999999999987653211 12234466677788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 716 YNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVT 795 (1224)
Q Consensus 716 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1224)
+.....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHH
Q 047171 796 WRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQ 875 (1224)
Q Consensus 796 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 875 (1224)
|.+++++++++|+.+++.....+..++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 047171 876 SWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDR 955 (1224)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 955 (1224)
....++...+..++..+..++++++|++++..|.++++.+++++.+......|+..+...+..+..+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99988888889999999999999999999999999999999998888888899999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 956 KSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
+++.+... .. ..++..|.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 337 ~~~~~~~~--~~--~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 337 EEEKDDPD--AV--ELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp CCCCCCSS--CC--CCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred CCCCCCCC--CC--CCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 66532211 11 12334578999999999963 45699999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1036 ~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
+|.+||+|+++++.+++|++++||||||.+|++||+|||.++.+..++++++++++.+++++++..+|+|+||.+|++|.
T Consensus 411 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE 490 (598)
T ss_dssp EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHT
T ss_pred EEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+||||||||+|||||++++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||+|++|++|+|+|+
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchhHHHHHHhhc
Q 047171 1196 GTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1196 Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|+|+||+++ +|.|+++++.|.+
T Consensus 571 g~~~~l~~~--~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 571 GKHDELIQK--RGFYYELFTSQYG 592 (598)
T ss_dssp SCHHHHHHT--TCHHHHHHHHHHG
T ss_pred CCHHHHHhC--CCHHHHHHHHHhh
Confidence 999999986 8999999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-84 Score=803.94 Aligned_cols=572 Identities=27% Similarity=0.407 Sum_probs=515.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSET----RLYCLIFLGLAFLTLIANLIQ 714 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 714 (1224)
+++++++.++.++.+++++++.++.+++.+..|++++.+++.............. ..+.++++++.++..++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888888889999999999876543221001111 234445556667778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 715 HYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLV 794 (1224)
Q Consensus 715 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1224)
.+...+.+.++..++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 6789999999999999999999888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHH
Q 047171 795 TWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874 (1224)
Q Consensus 795 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 874 (1224)
+|.+++++++++|+.+++.....+..++..++..+..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047171 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILD 954 (1224)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 954 (1224)
..++.+....+..++..+..++++++|++++..|.++++.+++++.+......|+..+...+..+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC
Q 047171 955 RKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034 (1224)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1034 (1224)
.+++.+..... . ..++..+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++
T Consensus 320 ~~~~~~~~~~~-~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 320 EDYDIKNGVGA-Q--PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp CCCSSCCCTTC-C--CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCcccCCCCc-c--ccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 76654321111 1 122345789999999999743 4579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCC
Q 047171 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG 1114 (1224)
Q Consensus 1035 G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G 1114 (1224)
|+|.+||+|+++++.+++|++++||||||++|++||+|||.++.+..++++++++++.+++++++.++|+|+||.+|++|
T Consensus 396 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp EEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred cEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive 1194 (1224)
.+||||||||++||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchhHHHHHHhh
Q 047171 1195 QGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1195 ~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+|+|+||+++ +|.|+++++.|.
T Consensus 556 ~g~~~el~~~--~~~~~~~~~~q~ 577 (578)
T 4a82_A 556 TGTHRELIAK--QGAYEHLYSIQN 577 (578)
T ss_dssp EECHHHHHHT--TSHHHHHHTTTT
T ss_pred ECCHHHHHhC--CcHHHHHHHhhc
Confidence 9999999986 789999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-83 Score=794.63 Aligned_cols=544 Identities=25% Similarity=0.358 Sum_probs=489.1
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH-----HH------HHHHHHHHHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV-----DK------VPEKGMCWTR 71 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~-----~~------~~~~~~~~~~ 71 (1224)
++++++|.+++++ .+++++++.++.+++.+..|+++++++|.+... +...+.... .. .++..++..+
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 11 SKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887754 566777888888888899999999999986432 322221100 00 0556777888
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047171 72 TAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRL 151 (1224)
Q Consensus 72 ~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (1224)
.++++..++|.++|+|++++|..||++ . ++|++++|+++|++.+++++...+..++..+++++++++++++++|++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 165 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVNR---F-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKL 165 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH---S-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcc---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 5 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 152 ALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLT 231 (1224)
Q Consensus 152 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 231 (1224)
++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
T 3qf4_A 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245 (587)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047171 232 KGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPV 310 (1224)
Q Consensus 232 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 310 (1224)
.+...+.. ++..++.++++|+|++++..|.+++|.+++++.+......|+..+...+..++++.++++|++++++.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 246 IVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77777766 66677778889999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 311 INSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.++.. .....+...+.|+++||+|+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 326 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 326 IEEAD-NALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCCT-TCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred cCCCC-CccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 43322 112223345789999999999642 35779999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++||||+|+|++|++||+|||.+|.++.+++++.++++.+++++++..+|+|++|.+|++|.+|||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||++|||||+++|+|||||||||+||+++++.+++.++++.+|+|+|+||||++++..||+|++|++|+|+++|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~~~~ 557 (1224)
++. ++.|+++++.|.
T Consensus 565 ~~~----~~~~~~~~~~~~ 579 (587)
T 3qf4_A 565 LEH----CKPYREIYESQF 579 (587)
T ss_dssp HHH----CHHHHHHHHHHC
T ss_pred HhC----CcHHHHHHHHHh
Confidence 988 789999998764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-82 Score=786.33 Aligned_cols=568 Identities=28% Similarity=0.448 Sum_probs=511.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 638 SLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHYN 717 (1224)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 717 (1224)
.+++++++.++.++.+++++++.++.+++.++.+++++.+++....... . .......++++++.++..++.++..+.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777788888888888889999888886643211 1 111122233566677888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 718 FAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWR 797 (1224)
Q Consensus 718 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1224)
....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHHH
Q 047171 798 VAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSW 877 (1224)
Q Consensus 798 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 877 (1224)
+++++++++|+.+++.....+..++..++.++..++..+.+.|.+.|+++||+|+.|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877778888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 047171 878 FSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKS 957 (1224)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 957 (1224)
...+...+..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 958 EIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
+.++.. . ..++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|
T Consensus 327 ~~~~~~---~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 327 ERDNGK---Y--EAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred cCCCCC---C--CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 432110 0 112234679999999999742 2569999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCC
Q 047171 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116 (1224)
Q Consensus 1038 ~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~ 1116 (1224)
.+||+|+++++.+++|++++||||+|.+|++||+|||.++. +..++++++++++.+++++++.++|+||||.+|++|.+
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred EECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 99999999999999999999999999999999999999987 66789999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
||||||||++||||++++|+|||||||||+||+++++.+++.|++..+|+|+|+||||+++++.||+|++|++|+++|.|
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHHhh
Q 047171 1197 TQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1197 t~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+|+||++. ++.|+++++.|.
T Consensus 561 ~~~~l~~~--~~~~~~~~~~q~ 580 (582)
T 3b5x_A 561 RHADLLAQ--DGAYAQLHRIQF 580 (582)
T ss_pred CHHHHHhC--CcHHHHHHHHhh
Confidence 99999986 789999999885
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-84 Score=864.34 Aligned_cols=577 Identities=35% Similarity=0.566 Sum_probs=525.3
Q ss_pred chHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCc-----------------hhhhhhHHHHH
Q 047171 636 PSSLLRLLRMSA-IEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDD-----------------SKLKSETRLYC 697 (1224)
Q Consensus 636 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 697 (1224)
...+++++++.. ..|..++++++++++.+++.|+.+++++.+++.+..... .........|.
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 345667777664 467778888999999999999999999988876542110 00112334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 047171 698 LIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLL 777 (1224)
Q Consensus 698 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~ 777 (1224)
+++++++++..++.+++.+++.+.+.++..++|.++|++++++|++||| .+++|++++|+++|++.++..+...+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHH--SCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHH
Q 047171 778 IQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRI 857 (1224)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 857 (1224)
+..++.++++++++++++|.+++++++++|+++++.....+..++..++.++..++...++.|++.|+++||+|++|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 858 LDLFRETMKGPKKESIKQSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTS 937 (1224)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1224)
.++|.+..+...+...+.....+...++..++..+..++++|+|++++..|.+++|.+++++.++.....++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCC
Q 047171 938 DIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGS 1017 (1224)
Q Consensus 938 ~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGs 1017 (1224)
.+..+..+++|+.++++.+++.++...... .+++..|.|+|+||+|+|+++++.++|+|+||+|+|||++||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCC
Confidence 999999999999999987765433211111 222346789999999999876566899999999999999999999999
Q ss_pred ChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHH
Q 047171 1018 GKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097 (1224)
Q Consensus 1018 GKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~ 1097 (1224)
|||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||++|++||+|||.+|.+..++++++++++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1098 ~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhh
Q 047171 1178 IQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1178 i~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
+++||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQT 626 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHT--TSHHHHHHHHTC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHHhh
Confidence 999999999999999999999999986 899999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-83 Score=792.91 Aligned_cols=543 Identities=32% Similarity=0.428 Sum_probs=489.4
Q ss_pred hHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-C---hHHH----HHHH----H-H------HHH
Q 047171 4 KGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-D---ISIS----IEAV----D-K------VPE 64 (1224)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~---~~~~----~~~~----~-~------~~~ 64 (1224)
++++++|.+++++ .++++++++++.+++.++.|++++.++|.+... + ...+ .... . . .++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999988754 556777788888888888999999999987532 1 1111 1100 0 0 056
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047171 65 KGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVA 144 (1224)
Q Consensus 65 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1224)
..++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 156 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN---N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIM 156 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT---S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999999999998 5 99999999999999999999998888899999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 047171 145 FLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMEL 224 (1224)
Q Consensus 145 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~ 224 (1224)
++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+.
T Consensus 157 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 236 (578)
T 4a82_A 157 FFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR 236 (578)
T ss_dssp HHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 225 GIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFE 303 (1224)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~ 303 (1224)
..+..+..+...+.. .+..++.++++++|++++..|.+++|.+++++.++.....|+..+...+..++++.++++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~ 316 (578)
T 4a82_A 237 ALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ 316 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887777 6677777888999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCcccccccccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 304 MIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
+++.+++.++.. ...+.+...+.|+++||+|+|++. ++++++|||||||||||||+++|+|+|+|++
T Consensus 317 ~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 317 LIDEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp HHTCCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred HHcCCCcccCCC-CccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 999876543321 112223345789999999999742 3577999999999999999999999999999
Q ss_pred cEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCC
Q 047171 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG 451 (1224)
Q Consensus 372 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 451 (1224)
|+|.+||+|+++++.+++|++||||+|+|++|++||+|||.+|.++.+++++.++++.+++++++.++|+|++|.+|++|
T Consensus 396 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g 475 (578)
T 4a82_A 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475 (578)
T ss_dssp EEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred cEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEe
Q 047171 452 VQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531 (1224)
Q Consensus 452 ~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~ 531 (1224)
.+||||||||++||||++++|+|||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChHHHHhhccCCCchHHHHHHHH
Q 047171 532 SGSHDVLMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 532 ~g~~~~l~~~~~~~~~~y~~~~~~~ 556 (1224)
+|+|+|+++. ++.|+++++.|
T Consensus 556 ~g~~~el~~~----~~~~~~~~~~q 576 (578)
T 4a82_A 556 TGTHRELIAK----QGAYEHLYSIQ 576 (578)
T ss_dssp EECHHHHHHT----TSHHHHHHTTT
T ss_pred ECCHHHHHhC----CcHHHHHHHhh
Confidence 9999999987 78999988654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-83 Score=795.53 Aligned_cols=545 Identities=30% Similarity=0.444 Sum_probs=491.8
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHHH----HH-------HHHHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEAV----DK-------VPEKGMCWT 70 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~----~~-------~~~~~~~~~ 70 (1224)
.++++++|++++++ .++++++++++.+++.+..|++++.++|.+... +...+...+ .. .++..++..
T Consensus 24 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (598)
T 3qf4_B 24 TLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIML 102 (598)
T ss_dssp HHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888887644 566777888888888899999999999987532 222211110 00 056677788
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047171 71 RTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150 (1224)
Q Consensus 71 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1224)
+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++++++|+
T Consensus 103 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 103 TLSQDVVFRLRKELFEKLQRVPVGFFDR---T-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTHHHHH---S-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999 5 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 151 LALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230 (1224)
Q Consensus 151 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 230 (1224)
+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047171 231 TKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVP 309 (1224)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 309 (1224)
..++..++. ++..++.++++++|++++..|.+++|.+++++.+......|+..+...+..++++.++++|++++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888777776 6677777888999999999999999999999999988899999999999999999999999999998776
Q ss_pred CCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
+.+.+. ....++..++|+++||+|+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 339 EKDDPD--AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp CCCCSS--CCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 543221 12223345789999999999642 35679999999999999999999999999999999999
Q ss_pred EecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH
Q 047171 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ 458 (1224)
Q Consensus 379 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 458 (1224)
+|+++++.+++|++||||+|+|++|++||+|||.+|.++.+++++.++++.++++++++++|+|++|.+|++|.+|||||
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 459 KQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 459 ~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
||||+||||++++|+|||||||||+||+++++.+++.++++.+|+|+|+||||+++++.||+|++|++|+|+++|+|+||
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhhccCCCchHHHHHHHHHH
Q 047171 539 MQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 539 ~~~~~~~~~~y~~~~~~~~~ 558 (1224)
+++ ++.|++++..|..
T Consensus 577 ~~~----~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 577 IQK----RGFYYELFTSQYG 592 (598)
T ss_dssp HHT----TCHHHHHHHHHHG
T ss_pred HhC----CCHHHHHHHHHhh
Confidence 987 8999999988764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-82 Score=784.38 Aligned_cols=569 Identities=30% Similarity=0.463 Sum_probs=510.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 637 SSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHY 716 (1224)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 716 (1224)
..+++++++.++.++.+++++++.++.+++.+..+++++.+++...... .. .......+.++++.++..++.++..+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--DR-SVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--TH-HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777778888888888888888888887654211 11 11112223356667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 717 NFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTW 796 (1224)
Q Consensus 717 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1224)
.....+.++..++|.+++++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHH
Q 047171 797 RVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQS 876 (1224)
Q Consensus 797 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 876 (1224)
.+++++++++|+.+++.....+..++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888778888888888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047171 877 WFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRK 956 (1224)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 956 (1224)
....+...+..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+..+..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
++.+.. . . ..++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 326 ~~~~~~-~--~--~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 326 QEKDEG-K--R--VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp CSCCCC-C--B--CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred CCccCC-C--C--CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 543211 0 0 112234679999999999732 256999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1037 VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
|.+||+|+++++.+++|++++||||+|.+|++||+|||.++. +..++++++++++.+++++++.++|+||||.+|++|.
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~ 479 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSC
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999987 6678999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+|+|+|+||||+++++.||+|++|++|+++|.
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchhHHHHHHhh
Q 047171 1196 GTQSSLLSMGNGGAYYSLIKMQA 1218 (1224)
Q Consensus 1196 Gt~~eLl~~~~~g~y~~l~~~q~ 1218 (1224)
|+|+||++. ++.|+++++.|.
T Consensus 560 g~~~~l~~~--~~~~~~~~~~q~ 580 (582)
T 3b60_A 560 GTHSELLAQ--HGVYAQLHKMQF 580 (582)
T ss_dssp ECHHHHHHH--TSSHHHHHHHTC
T ss_pred cCHHHHHHc--CCHHHHHHHHhc
Confidence 999999986 789999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-81 Score=772.45 Aligned_cols=543 Identities=29% Similarity=0.393 Sum_probs=485.4
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHH----HHH-H------HHHHHHHH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEA----VDK-V------PEKGMCWT 70 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~----~~~-~------~~~~~~~~ 70 (1224)
.++++++|.+++++ .++++++++++.+++.+..|++++.++|.+... +....... +.. . ++..++..
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 12 TFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788776644 456667777888888888899999999986532 21111111 000 0 55667778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047171 71 RTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSWR 150 (1224)
Q Consensus 71 ~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1224)
+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++++++|+
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQ---E-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCC---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8999999999999999999999999998 5 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 151 LALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGL 230 (1224)
Q Consensus 151 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 230 (1224)
+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047171 231 TKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVP 309 (1224)
Q Consensus 231 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 309 (1224)
..++..++. ++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..++++.++++|++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888887777 6777777888999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCcccccccccccccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 047171 310 VINSEDEIGKTLAYLRGEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377 (1224)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 377 (1224)
+.++. ..+.+...+.|+++||+|+|++ . ++|+++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 53221 1111223467999999999974 2 2567999999999999999999999999999999999
Q ss_pred CEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCCh
Q 047171 378 GHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG 456 (1224)
Q Consensus 378 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 456 (1224)
|+|+++++.+++|++||||+|+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+|++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 99999999999999999999999999999999999997 67788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChH
Q 047171 457 GQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHD 536 (1224)
Q Consensus 457 Gq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~ 536 (1224)
|||||++||||++++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHhhccCCCchHHHHHHHHH
Q 047171 537 VLMQMNNGEGGAYSKMVQLQQ 557 (1224)
Q Consensus 537 ~l~~~~~~~~~~y~~~~~~~~ 557 (1224)
|+++. ++.|+++++.|.
T Consensus 564 ~l~~~----~~~~~~~~~~q~ 580 (582)
T 3b5x_A 564 DLLAQ----DGAYAQLHRIQF 580 (582)
T ss_pred HHHhC----CcHHHHHHHHhh
Confidence 99987 789999998763
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-80 Score=771.14 Aligned_cols=543 Identities=30% Similarity=0.428 Sum_probs=485.6
Q ss_pred cchHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHH----HHH-------HHHHHHHH
Q 047171 2 GTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEA----VDK-------VPEKGMCW 69 (1224)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~----~~~-------~~~~~~~~ 69 (1224)
+.++++++|.+++++ .++++++++++.+++.+..|++++.++|.+... +....... +.. .++..++.
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 11 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888877644 456667777888888888899999999976432 22111110 000 05566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 047171 70 TRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLSW 149 (1224)
Q Consensus 70 ~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1224)
.+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++++...+..++.++++++++++++++++|
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~---~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDK---Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHH---S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCC---C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88899999999999999999999999998 5 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 047171 150 RLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQG 229 (1224)
Q Consensus 150 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~~ 229 (1224)
++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047171 230 LTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRV 308 (1224)
Q Consensus 230 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 308 (1224)
+..++..++. ++..+..++++++|++++..|.+++|.+++++.++.....|+..+...+..++++..+++|++++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888888777 667777778899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCcccccccccccccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 047171 309 PVINSEDEIGKTLAYLRGEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376 (1224)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 376 (1224)
++.++. ..+.+...+.|+++||+|+|++ . ++|+++|||||||||||||+++|+|+++|++|+|.+
T Consensus 326 ~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 326 QEKDEG---KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp CSCCCC---CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CCccCC---CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 653321 1112223467999999999973 2 256799999999999999999999999999999999
Q ss_pred CCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCC
Q 047171 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLS 455 (1224)
Q Consensus 377 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 455 (1224)
||+|+++++.+++|++||||+|+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999997 6778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecCh
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~ 535 (1224)
||||||++||||++++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHhhccCCCchHHHHHHHH
Q 047171 536 DVLMQMNNGEGGAYSKMVQLQ 556 (1224)
Q Consensus 536 ~~l~~~~~~~~~~y~~~~~~~ 556 (1224)
+|+++. ++.|+++++.|
T Consensus 563 ~~l~~~----~~~~~~~~~~q 579 (582)
T 3b60_A 563 SELLAQ----HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHH----TSSHHHHHHHT
T ss_pred HHHHHc----CCHHHHHHHHh
Confidence 999987 78899998765
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-64 Score=566.75 Aligned_cols=278 Identities=42% Similarity=0.653 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcC
Q 047171 935 MTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQ 1014 (1224)
Q Consensus 935 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~ 1014 (1224)
...+++.+..+++|++++++.+++........ ..++..+.|+|+||+|+|++ +.++|+||||+|++||++|||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~---~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~ 88 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAG---PLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGP 88 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCB---CCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESS
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccccc---ccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECC
Confidence 34567778889999999998765533211111 11234578999999999963 35699999999999999999999
Q ss_pred CCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHh
Q 047171 1015 SGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLAN 1094 (1224)
Q Consensus 1015 SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~ 1094 (1224)
||||||||+++|+|+|+|++|+|.+||.|+++++.+.+|++|+||||+|.+|++||+|||.++.+..++++++++++.++
T Consensus 89 sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168 (306)
T ss_dssp SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 047171 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR 1174 (1224)
Q Consensus 1095 l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 1174 (1224)
+++++..+|+||+|.+|++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1175 LSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1175 l~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
++++..||+|+||++|+|+++|+|++|++. +|.|++||+.|..
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~--~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHEALLSR--GGVYADMWQLQQG 291 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHH--TSHHHHHHHHHHC
T ss_pred hHHHHcCCEEEEEECCEEEEECCHHHHHhc--ChHHHHHHHHHHh
Confidence 999999999999999999999999999986 8999999998864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-63 Score=608.94 Aligned_cols=199 Identities=23% Similarity=0.326 Sum_probs=166.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999952 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEecCCCC-CcccHHHHHccC-CCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYG-KEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~-~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||++.+ ++.|++||+... ... ...+.+.++++.. |++........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999875 578999998653 111 1122333333333 33333344456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl~ 1203 (1224)
+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999876 999999986 88889999998875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-63 Score=604.85 Aligned_cols=199 Identities=23% Similarity=0.328 Sum_probs=165.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999952 3699999999999999999999999999999999999999999986 2369
Q ss_pred EEEecCCCC-CcccHHHHHccC-CCC-CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYG-KEV-ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~-~~~-~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+||||++.. ++.|+.||+... .+. ...+.+.+++ ..+ |+.........+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL---------KPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT---------TTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH---------HHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 578999998643 111 1122222222 222 34334445566899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl~ 1203 (1224)
+|++|||||||++||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++++.|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999875 38999999999999876 999999986 88889999988875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-62 Score=614.05 Aligned_cols=186 Identities=24% Similarity=0.373 Sum_probs=145.4
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.+...|++++|++. ++|++++|+||||||||||+++|+| |+| +|.+... +.+++|+
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~~v 500 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTVYV 500 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEEET
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEEEE
Confidence 46777888888642 3577999999999999999999995 544 5544321 1247899
Q ss_pred cCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEP-ILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~-~lf-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+|++ .++ ..|+.||+.+..... .+++.+.++ .+ |++ ........+||||||||++|||||+.+|+
T Consensus 501 ~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~---------~l--gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 501 EHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLI---------EF--GFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp TCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHH---------HT--TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccCCcHHHHHHHhhcCH-HHHHHHHHH---------Hc--CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9986 444 459999998621111 333433333 33 442 23455667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cCEEEEEeCceEE-eecChHHHHh
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVI-ESGSHDVLMQ 540 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~-~~g~~~~l~~ 540 (1224)
||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999988 68999999999999976 9999999999997 5899888764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-63 Score=600.28 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=165.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999953 3688899999999999999999999999999999999999999998764 58
Q ss_pred EEEecCCCC-CcccHHHHHccCCCCC---CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYGKEVA---TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~~~~~---~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+|+||++.. +..|+++|+....... ..+.+.++++..+ ++........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN-----------LHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT-----------GGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC-----------CHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999864 5789999997642211 1222333333333 333344555689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLL 1202 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl 1202 (1224)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |.+...|++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999875 48899999999999976 999999986 6677778876654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-61 Score=605.85 Aligned_cols=202 Identities=23% Similarity=0.363 Sum_probs=132.6
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------CcEEEECCEec
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVI---------------------SLLERFYDPV-------KGNILLDGHKI 381 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~---------------------~ll~~~~~~~-------~G~i~~~g~~~ 381 (1224)
++||||+.+ +++++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 34 L~~vsl~i~---~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 34 LKNIDVEIP---RGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp CCSEEEEEE---TTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred eeccEEEEC---CCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 678888864 5779999999999999998 8899999998 45556666554
Q ss_pred CCCCHHHHhcccEEecCCCCCC--------------------cccHHHHHhcCCC-CCC--HHHHHHH-H-HHhcHHHHH
Q 047171 382 KKLQLKWLRSQMGLVNQEPILF--------------------STSIKENILIGKP-GAS--METVVKA-A-QAANVHDFI 436 (1224)
Q Consensus 382 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~~ni~~g~~-~~~--~~~~~~~-~-~~~~~~~~i 436 (1224)
.. ..++.+|+|+|.+.++ ..|++||+.+... ... ..+..+. . +.....+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 2245677777765432 3489999987421 101 0111110 0 000111234
Q ss_pred Hhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCc
Q 047171 437 MKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRL 512 (1224)
Q Consensus 437 ~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l 512 (1224)
+.+ |++.. ......+|||||||||+|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|.|+|+|||++
T Consensus 187 ~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 187 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 444 44432 456778999999999999999999998 999999999999999999999998764 589999999999
Q ss_pred chhhccCEEEEE------eCceEEeecChHHHHh
Q 047171 513 STIRKADLIGVL------QSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 513 ~~~~~ad~i~vl------~~G~i~~~g~~~~l~~ 540 (1224)
+.+..||+|++| ++|++++.|+++++.+
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 998889999999 8999999999988754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-60 Score=581.95 Aligned_cols=198 Identities=25% Similarity=0.382 Sum_probs=162.2
Q ss_pred EEEEEECCCCCCccceeceeEEEeCC-----cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 981 KNVFFSYPSRPDQMIFKGLTLKIEAG-----KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl~I~~G-----e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
++++|+|+.. ..+++|+||++++| |++||+||||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 4567788632 35799999999999 8899999999999999999999999999972 21 346
Q ss_pred eEEEecCCC-CCcccHHHHHccCC--CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1056 IALVSQEPT-LFAGTIRQNIVYGK--EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1056 i~~V~Qdp~-LF~gTIreNl~~~~--~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++|+||++. .|++|+++|+.... .....+...++++..++ .........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 56889999986421 12233344444444433 33344555689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKN--GKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~--G~Ive~Gt~~eLl~~ 1204 (1224)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999876 999999996 999999999999874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-59 Score=524.76 Aligned_cols=267 Identities=43% Similarity=0.681 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECCCC-----------CCCCEEEEEcCCCCc
Q 047171 287 NLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSG 355 (1224)
Q Consensus 287 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsG 355 (1224)
.+..++++.++++|++++++.+++..+.. .........+.|+|+||+|+|++. ++++++|||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 45678889999999999998766543221 111222335789999999999642 357799999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 047171 356 KSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDF 435 (1224)
Q Consensus 356 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~ 435 (1224)
||||+++|+|+|+|++|+|.+||+|+.+++..++|++||||+|+|++|++||+|||.+|.+..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 436 i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
+..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||++++..|++.|.++.+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHHHHH
Q 047171 516 RKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQLQQS 558 (1224)
Q Consensus 516 ~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~~~~ 558 (1224)
..||+|++|++|+|++.|+|+||++. ++.|++++..|..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~----~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSR----GGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHH----TSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhc----ChHHHHHHHHHHh
Confidence 99999999999999999999999998 8999999988763
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=470.36 Aligned_cols=240 Identities=42% Similarity=0.683 Sum_probs=225.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
.+|+++||+|+|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 3469999999999999999999999999999999999999999999999999999988889999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
|+||||+|.+|++|++|||.++.+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986556788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. +.+.|.+++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~l~~ 243 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS-TTCHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CchHHHHHHH
Confidence 999999999999999999999999988778999999999999988999999999999999999999875 4789999987
Q ss_pred Hh
Q 047171 1216 MQ 1217 (1224)
Q Consensus 1216 ~q 1217 (1224)
.|
T Consensus 244 ~~ 245 (247)
T 2ff7_A 244 LQ 245 (247)
T ss_dssp HH
T ss_pred hh
Confidence 66
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-53 Score=466.28 Aligned_cols=241 Identities=44% Similarity=0.732 Sum_probs=224.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+|+|++....++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||.++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
|+||||+|.+|++|++|||.++....+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999875555678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIK 1215 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1215 (1224)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. ++.|.+++.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~~~~~~~ 252 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL--NGEYAEMWN 252 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH--TSHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc--ChHHHHHHH
Confidence 999999999999999999999999998778999999999999888999999999999999999999986 688999998
Q ss_pred Hhhc
Q 047171 1216 MQAS 1219 (1224)
Q Consensus 1216 ~q~~ 1219 (1224)
.|..
T Consensus 253 ~~~~ 256 (260)
T 2ghi_A 253 MQSG 256 (260)
T ss_dssp HHHC
T ss_pred hhhh
Confidence 7754
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-52 Score=464.47 Aligned_cols=242 Identities=42% Similarity=0.710 Sum_probs=221.7
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
.+.|+++||+|+|++.++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422356999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEEecCCCCCcccHHHHHccCCCCCCH-HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1055 CIALVSQEPTLFAGTIRQNIVYGKEVATE-AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~gTIreNl~~~~~~~~d-eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+||||+|.+|+.|++|||.++.+..++ +++.++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654444 67778888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhH
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~ 1211 (1224)
+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~--~~~~~ 251 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER--GGCYR 251 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH--TSHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--cHHHH
Confidence 9999999999999999999999999998754 8999999999999988999999999999999999999876 68999
Q ss_pred HHHHHhh
Q 047171 1212 SLIKMQA 1218 (1224)
Q Consensus 1212 ~l~~~q~ 1218 (1224)
+++..+.
T Consensus 252 ~~~~~~~ 258 (271)
T 2ixe_A 252 SMVEALA 258 (271)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9987663
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-53 Score=463.46 Aligned_cols=237 Identities=42% Similarity=0.704 Sum_probs=221.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999998888788899999
Q ss_pred EEecCCCCCcccHHHHHccC-CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1058 LVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~-~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
||||+|.+|++|++|||.++ .+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 45567788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
+||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~~~ 237 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc--cHHHHHHHHh
Confidence 99999999999999999999999987778999999999999888999999999999999999999875 6788888876
Q ss_pred hh
Q 047171 1217 QA 1218 (1224)
Q Consensus 1217 q~ 1218 (1224)
+.
T Consensus 238 ~~ 239 (243)
T 1mv5_A 238 QL 239 (243)
T ss_dssp CC
T ss_pred hh
Confidence 54
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=512.47 Aligned_cols=216 Identities=26% Similarity=0.399 Sum_probs=160.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHH---------HHHhcccCCC------Cc------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTII---------GLIERFYDPQ------SG------ 1035 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~---------~lL~rl~~p~------~G------ 1035 (1224)
.+++++++ .+.|+||||+|++|+.+||+|+||||||||+ +++.+...+. +|
T Consensus 589 ~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 589 SLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp EEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred eEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 46676653 2379999999999999999999999999997 3444333332 23
Q ss_pred eEEECCccCCCCCH----------HHH-------------------------------hcceEEEecCCCCCc-------
Q 047171 1036 SVMVDERNIKSYNL----------RKL-------------------------------RSCIALVSQEPTLFA------- 1067 (1224)
Q Consensus 1036 ~I~idG~di~~~~~----------~~l-------------------------------R~~i~~V~Qdp~LF~------- 1067 (1224)
.|.+|..++...+. +.+ ++..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 35666655533221 011 134578888876543
Q ss_pred --------------------------ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1068 --------------------------GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1068 --------------------------gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.|++||+.+.......++..++++.+++ |+ ..+|+.+.+|||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGE 810 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGE 810 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHH
Confidence 4667777665432122233333333332 22 34688889999999
Q ss_pred HHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCE
Q 047171 1122 KQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI------KNGK 1191 (1224)
Q Consensus 1122 rQRlaLARAll~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl------~~G~ 1191 (1224)
||||+|||||+++| +||||||||++||+.+.+.+++.|+++. +|+|||+|+|+++.++.||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999876 7999999999999999999999999875 589999999999999999999999 8999
Q ss_pred EEEecChhHHhhcCCCchhHH
Q 047171 1192 VVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1192 Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
|+++|||+|+++. .+.|..
T Consensus 891 Iv~~Gtpeel~~~--~~syt~ 909 (916)
T 3pih_A 891 IVATGTPEEIAKN--PHSYTG 909 (916)
T ss_dssp EEEEESHHHHHSC--TTCHHH
T ss_pred EEEEcCHHHHHhC--CchHHH
Confidence 9999999999986 344543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=470.01 Aligned_cols=237 Identities=26% Similarity=0.438 Sum_probs=220.5
Q ss_pred CCCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH
Q 047171 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 972 ~~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~ 1051 (1224)
++..+.|+++||+++|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.|+.+++++.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 4455789999999999632 4569999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1052 LRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+|++|+||||++.+|++|++||+.++. ...+++++++++.+++.+++.+.|.++++.++++|.+||||||||+||||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998653 3468899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhH
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~ 1211 (1224)
+++|+|||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||+||++|+|++.|+|+|++.. +...|.
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~-p~~~~v 249 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY-PADRFV 249 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC-CSBHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCchHH
Confidence 9999999999999999999999999999988788999999999999888999999999999999999999987 455554
Q ss_pred H
Q 047171 1212 S 1212 (1224)
Q Consensus 1212 ~ 1212 (1224)
.
T Consensus 250 a 250 (390)
T 3gd7_A 250 A 250 (390)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=428.25 Aligned_cols=228 Identities=49% Similarity=0.814 Sum_probs=209.3
Q ss_pred ccEEEEeEEEECC--CC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYP--TR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~--~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
.+|+++||+|+|+ +. ++++++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4699999999993 22 25679999999999999999999999999999999999999988888889999
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
|||+|+|.+|+.||+||+.++.+..+.+++.++++..++.+++.++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 474 ILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
+||||||||+||+.+++.+.+.|+++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++++.+ .+.|.+++
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~---~~~~~~l~ 242 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP---ESLYSYLY 242 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTST---TCHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC---chHHHHHH
Confidence 999999999999999999999998887799999999999999889999999999999999999998642 46788777
Q ss_pred HHH
Q 047171 554 QLQ 556 (1224)
Q Consensus 554 ~~~ 556 (1224)
..|
T Consensus 243 ~~~ 245 (247)
T 2ff7_A 243 QLQ 245 (247)
T ss_dssp HHH
T ss_pred Hhh
Confidence 643
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-49 Score=429.94 Aligned_cols=226 Identities=33% Similarity=0.502 Sum_probs=204.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35699999999999999999999999999999999999999999999999 39
Q ss_pred EEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
+||||+|.+|+.|++|||.++.. ..+++..++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998753 23455667777788888888899999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH---HhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALE---KMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~---~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|||||||||+||+.+++.+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~ 225 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR--DGAFAEF 225 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH--TSHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc--cHHHHHH
Confidence 999999999999999999999994 34468999999999999888999999999999999999999886 7889999
Q ss_pred HHHhhc
Q 047171 1214 IKMQAS 1219 (1224)
Q Consensus 1214 ~~~q~~ 1219 (1224)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 887754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=423.90 Aligned_cols=222 Identities=30% Similarity=0.454 Sum_probs=199.3
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35699999999999999999999999999999999999999999999999 3
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++||||+|.+|++|++||+.++.. ..+....++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753 3445566777778899999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEAL-EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~--~~~~~~~~ 227 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL--QPDFSSKL 227 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC----CHHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc--ChHHHHHh
Confidence 999999999999999999999974 555568999999999999888999999999999999999999875 45666654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=486.16 Aligned_cols=179 Identities=21% Similarity=0.296 Sum_probs=132.4
Q ss_pred CCCCcHHHHHHHHhc---------CCCCCCcEEEECCEecCC---CCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCC
Q 047171 351 SSGSGKSTVISLLER---------FYDPVKGNILLDGHKIKK---LQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA 418 (1224)
Q Consensus 351 ~sGsGKSTl~~ll~~---------~~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~ 418 (1224)
.+..||+++.+.+.. -|.|..|+|.++|++|.+ ++...+..-+.-++|++..+. + +...++..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~-- 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPE-- 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSS--
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchh--
Confidence 355688888887754 346789999999999987 555555555555555554322 1 12223221
Q ss_pred CHHHHH-----HHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHH
Q 047171 419 SMETVV-----KAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDP--KILLLDEATSALDAESER 490 (1224)
Q Consensus 419 ~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~ 490 (1224)
..++. +..+. + +++..+ |++.. .+....+|||||||||+|||||..+| ++|||||||++||++..+
T Consensus 345 -~~~i~~~i~~ei~~r--l-~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 345 -QAIALQRMAADLVKR--L-DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp -HHHHHHHHHHHHHHH--H-HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred -hHHHHHHHHHHHHHH--H-HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 12221 11111 2 245555 66543 67888999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEE------eCceEEeecChHHHHh
Q 047171 491 IVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 491 ~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~ 540 (1224)
.+.+.++++. .|.|+|+|+||++.+..||+|++| ++|+++..|+++++.+
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999998765 589999999999999889999999 7999999998887653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=423.00 Aligned_cols=227 Identities=48% Similarity=0.793 Sum_probs=209.0
Q ss_pred ccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcc
Q 047171 326 GEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
+.|+++||+|+|++. ++++++||+||||||||||+++|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 459999999999642 25669999999999999999999999987 8999999999988888888999
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
||||+|+|.+|+.||+|||.++.+....+++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHH
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~ 552 (1224)
+|||||||||+||+.+++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~----~~~~~~~ 250 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL----NGEYAEM 250 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH----TSHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc----ChHHHHH
Confidence 999999999999999999999999988778999999999999888999999999999999999999886 6788888
Q ss_pred HHHHH
Q 047171 553 VQLQQ 557 (1224)
Q Consensus 553 ~~~~~ 557 (1224)
+..+.
T Consensus 251 ~~~~~ 255 (260)
T 2ghi_A 251 WNMQS 255 (260)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=424.43 Aligned_cols=228 Identities=43% Similarity=0.714 Sum_probs=206.6
Q ss_pred cccEEEEeEEEECCC---C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc
Q 047171 325 RGEIEFKDVDFSYPT---R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS 391 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~---~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 391 (1224)
.+.|+++||+|+|++ . +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 356999999999975 2 256799999999999999999999999999999999999998888888889
Q ss_pred ccEEecCCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 392 QMGLVNQEPILFSTSIKENILIGKPGASM-ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 392 ~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
+||||+|+|.+|+.||+|||.++.+.... +++.++++..+++++++.+|+|+++.+++++.+|||||||||+|||||+.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654433 56677777888899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCch
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGA 548 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 548 (1224)
+|+|||||||||+||+.++..+.+.|.++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~----~~~ 249 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER----GGC 249 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH----TSH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC----cHH
Confidence 9999999999999999999999999998754 8999999999999888999999999999999999999876 678
Q ss_pred HHHHHHHH
Q 047171 549 YSKMVQLQ 556 (1224)
Q Consensus 549 y~~~~~~~ 556 (1224)
|.+++..+
T Consensus 250 ~~~~~~~~ 257 (271)
T 2ixe_A 250 YRSMVEAL 257 (271)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 88877654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=474.63 Aligned_cols=209 Identities=25% Similarity=0.415 Sum_probs=157.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh-cc----cC---CCCc-------------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE-RF----YD---PQSG------------- 1035 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl----~~---p~~G------------- 1035 (1224)
.++++|++. .+|+||||+|++||.+||+|+||||||||++.|+ |. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999852 2699999999999999999999999999999854 22 11 1233
Q ss_pred eEEECCccCCCCC---HH-------HHh---------cceEEEecCCCC---------------------C---------
Q 047171 1036 SVMVDERNIKSYN---LR-------KLR---------SCIALVSQEPTL---------------------F--------- 1066 (1224)
Q Consensus 1036 ~I~idG~di~~~~---~~-------~lR---------~~i~~V~Qdp~L---------------------F--------- 1066 (1224)
.|.+||.++..-+ +. ..| +..+|+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788988874322 11 122 345788875321 0
Q ss_pred -------------------------cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhccccccc-ccCCCCCCCChH
Q 047171 1067 -------------------------AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQLSGG 1120 (1224)
Q Consensus 1067 -------------------------~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt-~vge~G~~LSGG 1120 (1224)
..|+.||+.++... .++.+ ..+.+..+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 12555565554221 11111 12333333 5555 567778899999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCC
Q 047171 1121 QKQRIALARAVLKNP---MILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVI------KNG 1190 (1224)
Q Consensus 1121 QrQRlaLARAll~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl------~~G 1190 (1224)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998875 589999999999999889999999 689
Q ss_pred EEEEecChhHHhhc
Q 047171 1191 KVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1191 ~Ive~Gt~~eLl~~ 1204 (1224)
+|++.|+++++.+.
T Consensus 930 ~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 930 QIVAVGTPEEVAEV 943 (972)
T ss_dssp SEEEEESHHHHHTC
T ss_pred EEEEecCHHHHHhC
Confidence 99999999999875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-48 Score=422.87 Aligned_cols=223 Identities=44% Similarity=0.719 Sum_probs=201.0
Q ss_pred EEEEeEEEECC-CC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYP-TR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~-~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
|+++||+|+|+ +. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++||||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 45666666663 21 35679999999999999999999999999999999999999887777788899999
Q ss_pred cCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 397 NQEPILFSTSIKENILIG-KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 397 ~Q~~~lf~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+|+|.+|+.|++|||.++ .+..+.+++.++++..++++++.++|.|+++.+++++.+||||||||++|||||+++|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998 4555677888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHH
Q 047171 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~ 554 (1224)
|||||||+||+.+++.+.+.|.++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~----~~~~~~~~~ 236 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT----HPLYAKYVS 236 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH----CHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc----cHHHHHHHH
Confidence 999999999999999999999887779999999999999888999999999999999999999876 566766654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=430.16 Aligned_cols=225 Identities=30% Similarity=0.465 Sum_probs=191.9
Q ss_pred ccEEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---
Q 047171 976 GFIELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK--- 1051 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~--- 1051 (1224)
..|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996432 246899999999999999999999999999999999999999999999999999998765
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1052 LRSCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
+|++||||||++.+|. .||+||+.++.. ..+.++ +.++++.++ ++........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vg-----------L~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG-----------LGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT-----------CGGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchHhcCChhhCCHHHHHH
Confidence 4789999999999886 499999987521 223333 344444443 3334455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999976 999999999999999999999
Q ss_pred hhcCCCchhHH
Q 047171 1202 LSMGNGGAYYS 1212 (1224)
Q Consensus 1202 l~~~~~g~y~~ 1212 (1224)
+.. +...|.+
T Consensus 252 ~~~-p~~~~~~ 261 (366)
T 3tui_C 252 FSH-PKTPLAQ 261 (366)
T ss_dssp HSS-CCSHHHH
T ss_pred HhC-CCcHHHH
Confidence 986 3444443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=418.97 Aligned_cols=215 Identities=28% Similarity=0.522 Sum_probs=184.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~ 1054 (1224)
.|+++||+++|++ ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 5999999999963 235999999999999999999999999999999999999999999999999984 334567899
Q ss_pred ceEEEecCC--CCCcccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1055 CIALVSQEP--TLFAGTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1055 ~i~~V~Qdp--~LF~gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
+||||||+| .+|..|++||+.++.. ..+.++ +.++++..+ ++........+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG-----------IEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCCcccCCHHHHHHHH
Confidence 999999998 5788999999987631 223333 333343333 333444556689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999976 99999999999999999999986
Q ss_pred c
Q 047171 1204 M 1204 (1224)
Q Consensus 1204 ~ 1204 (1224)
.
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=410.63 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~ 1055 (1224)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988887665 556
Q ss_pred eEEEecCCCCCcc-cHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++||||+|.+|.+ |++||+.++. +..+.++..+.+ .+.++.++ |++...+..+.+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999986 9999999863 222222333222 23344443 45556667788999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 68999999999988754 999999999999999999999763
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=410.81 Aligned_cols=214 Identities=31% Similarity=0.447 Sum_probs=179.3
Q ss_pred EEEEEEEEECCCCC-CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH----
Q 047171 978 IELKNVFFSYPSRP-DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL---- 1052 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1052 (1224)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987764
Q ss_pred hcceEEEecCCCCCcc-cHHHHHccCC-----CCCCHHH----HHHHHHHHhHHHHHHhcccccccc-cCCCCCCCChHH
Q 047171 1053 RSCIALVSQEPTLFAG-TIRQNIVYGK-----EVATEAE----IRKAAVLANAHEFISSTEDGYDTY-CGERGVQLSGGQ 1121 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~g-TIreNl~~~~-----~~~~dee----i~~al~~a~l~~~I~~lp~gldt~-vge~G~~LSGGQ 1121 (1224)
|++++||||+|.+|.. |++||+.++. ...+.++ +.++++.. |+... ....+.+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 4579999999999986 9999997641 1223322 22333332 23222 245667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++..+.||+|++|++|+|++.|+.+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998753 89999999999977779999999999999999887
Q ss_pred HHh
Q 047171 1200 SLL 1202 (1224)
Q Consensus 1200 eLl 1202 (1224)
++-
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 763
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=410.07 Aligned_cols=213 Identities=27% Similarity=0.443 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 35699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHccCCCCC----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1057 ALVSQEPTL-FAGTIRQNIVYGKEVA----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1057 ~~V~Qdp~L-F~gTIreNl~~~~~~~----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+|++|++.+ |..|++||+.++.... .++++.++++..++.+ .......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 999999976 6789999998864321 2344555555554422 22334457999999999999999
Q ss_pred cc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1132 LK------NPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1132 l~------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
++ +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 4699999999999875 9999999999999999999997
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=405.89 Aligned_cols=214 Identities=30% Similarity=0.463 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~ 1054 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 346999999999999999999999999999999999999999999999999985 345567889
Q ss_pred ceEEEecCCCCCcc-cHHHHHccCC---CCCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1055 CIALVSQEPTLFAG-TIRQNIVYGK---EVATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~g-TIreNl~~~~---~~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
+|+||||++.+|.. |++||+.++. ...+.+ ++.++++..+ ++........+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----------LKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-----------CGGGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHH
Confidence 99999999999875 9999998742 112222 2333343333 333344556789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998875 48999999999999875 999999999999999999999875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=420.84 Aligned_cols=222 Identities=28% Similarity=0.460 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC--CCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS--YNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~~~~lR~ 1054 (1224)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3569999999999999999999999999999999999999999999999999832 23344678
Q ss_pred ceEEEecCCCCCc-ccHHHHHccCCCC--CC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH
Q 047171 1055 CIALVSQEPTLFA-GTIRQNIVYGKEV--AT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~-gTIreNl~~~~~~--~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL 1127 (1224)
+||||||++.+|. .|++|||.++... .+ ++++.++++.+++. ........+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-----------ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-----------GGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHH
Confidence 8999999999996 5999999987431 12 23345555555443 33445556899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
||||+.+|++||||||||+||+.+...+++.|.+.. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++|++..
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 48999999999999865 999999999999999999999986
Q ss_pred CCCchhHHH
Q 047171 1205 GNGGAYYSL 1213 (1224)
Q Consensus 1205 ~~~g~y~~l 1213 (1224)
+...|...
T Consensus 230 -p~~~~~a~ 237 (359)
T 3fvq_A 230 -PADLDAAL 237 (359)
T ss_dssp -CSCHHHHH
T ss_pred -cccHHHHH
Confidence 45555433
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=403.07 Aligned_cols=213 Identities=27% Similarity=0.434 Sum_probs=184.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5699999999995 3469999999999999999999999999999999999999999999999999876 56678899
Q ss_pred eEEEecCCCCCcc-cHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFAG-TIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~g-TIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
|+||||+|.+|.. |++||+.++.. ..+. +++.++++..++. ........+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999998876 99999987521 1222 2344444444433 233344567999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999977 99999999999999999999975
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=410.56 Aligned_cols=216 Identities=30% Similarity=0.456 Sum_probs=180.3
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999864 3599999999999999999999999999999999999999999999998 3
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++||||+|.+|++|++|||. +.. ..+..+.++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999998 532 3445566677788899999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEAL-EKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|++++++.. ...|.+.
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~~~~~ 255 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL--RPDFSSK 255 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH--CHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh--cHHHHHH
Confidence 999999999999999999999874 445568999999999999888999999999999999999999764 3444443
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=406.75 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC----------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS---------- 1046 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~---------- 1046 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 499999999995 3469999999999999999999999999999999999999999999999999861
Q ss_pred CCH---HHHhcceEEEecCCCCCcc-cHHHHHccCC---CCCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1047 YNL---RKLRSCIALVSQEPTLFAG-TIRQNIVYGK---EVATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1047 ~~~---~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~---~~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
++. ..+|++++||||++.+|.. |++||+.++. ...+. +++.++++..++.+++ ......
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 443 3568899999999998875 9999998742 11222 2344455555443331 334556
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998875 48999999999999875 9999999999999
Q ss_pred EecChhHHhhc
Q 047171 1194 EQGTQSSLLSM 1204 (1224)
Q Consensus 1194 e~Gt~~eLl~~ 1204 (1224)
+.|++++++..
T Consensus 233 ~~g~~~~~~~~ 243 (262)
T 1b0u_A 233 EEGDPEQVFGN 243 (262)
T ss_dssp EEECHHHHHHS
T ss_pred EeCCHHHHHhC
Confidence 99999999875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-45 Score=419.19 Aligned_cols=219 Identities=27% Similarity=0.454 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...++. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 35699999999999999999999999999999999999999999999999999887765 4789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||+|++.+|. .||+|||.++.. ..+.++ +.++++..+ ++........+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----------LAHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTT-----------CGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhHCCHHHHHHHHHHH
Confidence 99999999996 599999998632 223333 334444443 333444556789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+...+++.|+++.+ |.|+|+|||+++.+.. ||||+||++|+|++.|+++|+... +
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~-p 225 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-P 225 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC-C
Confidence 99999999999999999999999999999988753 8999999999999865 999999999999999999999986 4
Q ss_pred CchhHH
Q 047171 1207 GGAYYS 1212 (1224)
Q Consensus 1207 ~g~y~~ 1212 (1224)
...|..
T Consensus 226 ~~~~v~ 231 (381)
T 3rlf_A 226 ADRFVA 231 (381)
T ss_dssp SBHHHH
T ss_pred ccHHHH
Confidence 555543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=421.38 Aligned_cols=216 Identities=27% Similarity=0.428 Sum_probs=201.6
Q ss_pred cccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcc
Q 047171 325 RGEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQ 392 (1224)
Q Consensus 325 ~~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 392 (1224)
.+.|+++||+|+|++ . +++++++|+||||||||||+++|+|+++ ++|+|.++|+++..++...+|++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 467999999999952 2 3577999999999999999999999998 99999999999999999999999
Q ss_pred cEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 393 MGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 393 i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
||||+|++.+|+.||+||+.+.. ....+++.++++..++.+++.+.|.+++|.++++|.+|||||||||||||||+++|
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 34678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhc
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
++||||||||+||+.++..+++.|++..+++|+|+|||+++.+..||+|++|++|+|++.|+++|+.+.+
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999998877789999999999988889999999999999999999999863
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-45 Score=402.83 Aligned_cols=214 Identities=21% Similarity=0.423 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH-HHhcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR-KLRSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~-~lR~~ 1055 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 499999999995 34699999999999999999999999999999999999999999999999999877654 46788
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCC---------------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEV---------------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~---------------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
++||||+|.+|. .|++||+.++... .+.++.. ..+.+.++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 6999999876321 1111111 1223334433 555556667778999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998875 48999999999999865 99999999999999999
Q ss_pred hhH
Q 047171 1198 QSS 1200 (1224)
Q Consensus 1198 ~~e 1200 (1224)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 999
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=404.65 Aligned_cols=213 Identities=29% Similarity=0.509 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCCCC--ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 978 IELKNVFFSYPSRPD--QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999988642 67889
Q ss_pred eEEEecCC--CCCcccHHHHHccCCCC-----CCHHHHHHHHHHHhHH--HHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1056 IALVSQEP--TLFAGTIRQNIVYGKEV-----ATEAEIRKAAVLANAH--EFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1056 i~~V~Qdp--~LF~gTIreNl~~~~~~-----~~deei~~al~~a~l~--~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++||||+| .++..|++||+.++... ..++++.++++..++. ++.. ....+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-----------RVPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-----------CCGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-----------CChhhCCHHHHHHHH
Confidence 99999997 57789999999886321 1245677777777665 4433 233579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 58999999999999876 999999999999999999999864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=394.20 Aligned_cols=207 Identities=28% Similarity=0.402 Sum_probs=177.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998877643 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 -SCIALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 -~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++||||+|.+|. .|++||+.++.. ..+. +++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 78999999999886 599999987521 1121 2233333333 343344555678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999998875 5899999999999887799999999999999986
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=414.58 Aligned_cols=217 Identities=28% Similarity=0.437 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCCC--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKEV--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.|+... .+. +++.++++..++.+ .......+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-----------LLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999987432 122 34555555554433 333445689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+++.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~-p 225 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS-P 225 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-C
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-c
Confidence 99999999999999999999999999999988753 8999999999999855 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 226 ~~~~ 229 (359)
T 2yyz_A 226 KNMF 229 (359)
T ss_dssp SBHH
T ss_pred ccHH
Confidence 4444
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=406.97 Aligned_cols=214 Identities=24% Similarity=0.382 Sum_probs=182.7
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC--CCCHHHHh
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK--SYNLRKLR 1053 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~~~~lR 1053 (1224)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999953 46999999999999999999999999999999999999999999999999998 77788899
Q ss_pred cceEEEecCCCC-Ccc--cHHHHHccCCCC-------CCHH---HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH
Q 047171 1054 SCIALVSQEPTL-FAG--TIRQNIVYGKEV-------ATEA---EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG 1120 (1224)
Q Consensus 1054 ~~i~~V~Qdp~L-F~g--TIreNl~~~~~~-------~~de---ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG 1120 (1224)
++|+||||++.+ |.. |++||+.++... ..++ ++.++++.. |++........+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHH
Confidence 999999999864 554 999999886311 1222 233333333 3433444556689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEccCchhhhh-cCEEEEEeCCEEEEec
Q 047171 1121 QKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTC--VVVAHRLSTIQK-ADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~Tv--I~IaHrl~ti~~-aD~I~vl~~G~Ive~G 1196 (1224)
||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+ |+|||+++.+.. ||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999988753 8899 999999999855 9999999999999999
Q ss_pred ChhHHhh
Q 047171 1197 TQSSLLS 1203 (1224)
Q Consensus 1197 t~~eLl~ 1203 (1224)
+++++++
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9999875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=413.09 Aligned_cols=214 Identities=30% Similarity=0.475 Sum_probs=184.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999941 3469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC--CCCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE--VATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~--~~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
|+||||++.+|. .|++|||.|+.. ..+. +++.++++..++. ........+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-----------SYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCCcccCCHHHHHHHHHH
Confidence 999999999997 599999988631 1222 3344455544443 333445568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
|||+.+|++||||||||+||+.+.+.+++.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999988753 8999999999999865 999999999999999999999876
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=415.35 Aligned_cols=217 Identities=34% Similarity=0.504 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.++.. ..+.+ ++.++++..++ +........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI-----------DKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----------TTCTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhhCChhhCCHHHHHHHHHHH
Confidence 99999999997 599999988631 12222 34444444443 33344455689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~-p 225 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK-P 225 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-C
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999988753 8999999999998755 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 226 ~~~~ 229 (362)
T 2it1_A 226 KYKF 229 (362)
T ss_dssp SBHH
T ss_pred cchH
Confidence 4444
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=392.48 Aligned_cols=211 Identities=30% Similarity=0.491 Sum_probs=185.9
Q ss_pred EEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 328 IEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 328 i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
|+++||+|+|++ . +++++++|+||||||||||+++|+|+++|++|+|.++| +|||
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 778888888852 2 35679999999999999999999999999999999998 4999
Q ss_pred ecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 396 VNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 396 v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
|+|+|++++.||+|||.++... ..++..++.+..++.+.+..+|.|++|.+++++.+||||||||++|||||+.+|++|
T Consensus 71 v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 71 VPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp ECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999997642 234455566666777778888999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHH
Q 047171 476 LLDEATSALDAESERIVQEALD---QASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~---~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~ 552 (1224)
|||||||+||+.++..+.+.+. +..+|+|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~----~~~~~~~ 225 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR----DGAFAEF 225 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH----TSHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc----cHHHHHH
Confidence 9999999999999999999884 34468999999999999888999999999999999999999887 6788887
Q ss_pred HHHH
Q 047171 553 VQLQ 556 (1224)
Q Consensus 553 ~~~~ 556 (1224)
+..|
T Consensus 226 ~~~~ 229 (237)
T 2cbz_A 226 LRTY 229 (237)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=393.20 Aligned_cols=208 Identities=29% Similarity=0.441 Sum_probs=178.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|+ + +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999987643 3578899
Q ss_pred EEecCCCCCcc-cHHHHHccCCCCCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKEVAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
||||+|.+|.. |++||+.++..... ++++.++++.. |++........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 99999998743221 12233333333 3433344556689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998753 8999999999998755 999999999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=393.15 Aligned_cols=208 Identities=26% Similarity=0.373 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999985 4899999999999999999999999999999999999999 9999999999888888999999
Q ss_pred EEEecCCCCCcc-cHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+||||++.+|.. |++||+.++.. ..+++++.++++..++.+ .....+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998864 99999998742 223566666666665533 33345568999999999999999999
Q ss_pred CC-------EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 047171 1135 PM-------ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1135 p~-------ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|+ +||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999875 5899999999999985 599999999999999999999975
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=414.01 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=181.4
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 34699999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
+||||++.+|. .|++|||.|+.. ..+.+ ++.++++..+ ++........+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----------IEELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTT-----------CGGGTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHH
Confidence 99999999996 599999998743 12333 3344444443 333445566789999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGN 1206 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~ 1206 (1224)
||+++|++||||||||+||+.+.+.+++.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~-p 233 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-P 233 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-c
Confidence 99999999999999999999999999999988753 7999999999999854 999999999999999999999976 3
Q ss_pred Cchh
Q 047171 1207 GGAY 1210 (1224)
Q Consensus 1207 ~g~y 1210 (1224)
...|
T Consensus 234 ~~~~ 237 (372)
T 1v43_A 234 NSVF 237 (372)
T ss_dssp SBHH
T ss_pred ccHH
Confidence 4444
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=411.84 Aligned_cols=210 Identities=29% Similarity=0.505 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987554 478899
Q ss_pred EEecCCCCCcc-cHHHHHccCCC---CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1058 LVSQEPTLFAG-TIRQNIVYGKE---VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1058 ~V~Qdp~LF~g-TIreNl~~~~~---~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
||||++.+|.. |++|||.++.. ...++++.++++..++.++ ......+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999988631 1123556666666554333 334456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|++||||||||+||+.+.+.+++.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998875 38999999999998755 999999999999999999999976
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=414.46 Aligned_cols=219 Identities=29% Similarity=0.417 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCcc--ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---HHH
Q 047171 977 FIELKNVFFSYPSRPDQM--IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRK 1051 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~--vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~ 1051 (1224)
.|+++||+++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 389999999995 345 999999999999999999999999999999999999999999999999986521 334
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHccCCCC--CCH----HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHH
Q 047171 1052 LRSCIALVSQEPTLFAG-TIRQNIVYGKEV--ATE----AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQR 1124 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~g-TIreNl~~~~~~--~~d----eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQR 1124 (1224)
.|++|+||||++.+|.. |++||+.++... .+. +++.++++..++.+ .......+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHH
Confidence 57899999999999974 999999987431 232 23445555544433 3334456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
++|||||+++|++||||||||+||+.+.+.+++.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988753 8999999999999865 999999999999999999999
Q ss_pred hhcCCCchh
Q 047171 1202 LSMGNGGAY 1210 (1224)
Q Consensus 1202 l~~~~~g~y 1210 (1224)
+.. +...|
T Consensus 229 ~~~-p~~~~ 236 (353)
T 1oxx_K 229 YDN-PVSIQ 236 (353)
T ss_dssp HHS-CSSHH
T ss_pred HhC-cccHH
Confidence 976 34444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=386.64 Aligned_cols=202 Identities=25% Similarity=0.420 Sum_probs=180.3
Q ss_pred ccEEEEeEEEECCC--C----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhccc
Q 047171 326 GEIEFKDVDFSYPT--R----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQM 393 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~--~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 393 (1224)
+.|+++||+|+|++ . ++++++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 35888999999952 2 25679999999999999999999999999999999998 49
Q ss_pred EEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 394 GLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 394 ~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
+||+|+|++|+.||+||+.++.. ....+..++++..++.+++..+|.++++.+++++.+||||||||++|||||+++|+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999854 23444556667778888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 474 ILLLDEATSALDAESERIVQEAL-DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||||||+||+.+++.+.+.+ .+..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999864 455568999999999999888999999999999999999999765
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=412.45 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=184.9
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC------CCHH
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS------YNLR 1050 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------~~~~ 1050 (1224)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 3469999999999999999999999999999999999999999999999999866 544
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHccCCC--CCCHH----HHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHH
Q 047171 1051 KLRSCIALVSQEPTLFA-GTIRQNIVYGKE--VATEA----EIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQ 1123 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~de----ei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQ 1123 (1224)
.+++|+||||++.+|. .|++|||.|+.. ..+.+ ++.++++..++ +........+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----------~~~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL-----------TELLNRKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTC-----------GGGTTCCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------chHhcCCcccCCHHHHH
Confidence 3678999999999986 699999998631 12322 34444544443 33334455689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhH
Q 047171 1124 RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1124 RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
|++|||||+.+|++||||||||+||+.+.+.+++.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 8999999999999865 99999999999999999999
Q ss_pred HhhcCCCchh
Q 047171 1201 LLSMGNGGAY 1210 (1224)
Q Consensus 1201 Ll~~~~~g~y 1210 (1224)
++.. +...|
T Consensus 227 l~~~-p~~~~ 235 (372)
T 1g29_1 227 VYDK-PANTF 235 (372)
T ss_dssp HHHS-CSBHH
T ss_pred HHhC-cccHH
Confidence 9976 34444
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=393.66 Aligned_cols=210 Identities=26% Similarity=0.408 Sum_probs=171.8
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHH-h
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKL-R 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~l-R 1053 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 389999999995 34699999999999999999999999999999999999 89999999999999988887665 5
Q ss_pred cceEEEecCCCCCcc-cHHHHHccCCC-----CCCH----HHHHHHHHHHhHHHHHHhccccccc-ccCCCCCC-CChHH
Q 047171 1054 SCIALVSQEPTLFAG-TIRQNIVYGKE-----VATE----AEIRKAAVLANAHEFISSTEDGYDT-YCGERGVQ-LSGGQ 1121 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~g-TIreNl~~~~~-----~~~d----eei~~al~~a~l~~~I~~lp~gldt-~vge~G~~-LSGGQ 1121 (1224)
+.++||||+|.+|.+ |++||+.++.. .... +++.++++.. |+++ .......+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL-----------DWDESYLSRYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------TCCGGGGGSBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCCCHHH
Confidence 569999999999875 99999976421 1111 2233333333 3321 22233345 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecCh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 47899999999999876 599999999999999999
Q ss_pred hH
Q 047171 1199 SS 1200 (1224)
Q Consensus 1199 ~e 1200 (1224)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 83
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=392.91 Aligned_cols=217 Identities=22% Similarity=0.349 Sum_probs=179.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--cCCCCceEEECCccCCCCCHHHH-h
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF--YDPQSGSVMVDERNIKSYNLRKL-R 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~~~~l-R 1053 (1224)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57899999999999988877665 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHccCC---------CCCCHHHHHHHHHHHhHHHHHHhccccccccc-CCCCC-CCChHH
Q 047171 1054 SCIALVSQEPTLFAG-TIRQNIVYGK---------EVATEAEIRKAAVLANAHEFISSTEDGYDTYC-GERGV-QLSGGQ 1121 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~g-TIreNl~~~~---------~~~~deei~~al~~a~l~~~I~~lp~gldt~v-ge~G~-~LSGGQ 1121 (1224)
+.++||||+|.+|.+ |++||+.++. +..+.++..+ .+.+.+..+ |+++.. ..... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998875 8999986531 1122222211 122333332 444322 23333 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecCh
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK--ADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--aD~I~vl~~G~Ive~Gt~ 1198 (1224)
|||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999875 47899999999999875 899999999999999999
Q ss_pred hHHhh
Q 047171 1199 SSLLS 1203 (1224)
Q Consensus 1199 ~eLl~ 1203 (1224)
+++..
T Consensus 250 ~~~~~ 254 (267)
T 2zu0_C 250 TLVKQ 254 (267)
T ss_dssp THHHH
T ss_pred HHHhh
Confidence 98754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=391.29 Aligned_cols=208 Identities=19% Similarity=0.298 Sum_probs=179.8
Q ss_pred EEEEEEEEECCCC-CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 978 IELKNVFFSYPSR-PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 978 I~~~~vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
|+++|++++|++. ...++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998764 33 7889
Q ss_pred E-EEecCCCCCcccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccc-cccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1057 A-LVSQEPTLFAGTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYD-TYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1057 ~-~V~Qdp~LF~gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gld-t~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+ ||||+|.+ ..|++||+.++.+ ...++++.++++..+ ++ ......+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------LGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTT-----------CCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcC-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999987532 234555655555443 44 4455666789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cC-EEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-AD-NIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD-~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
++|++||||||||+||+++.+.+.+.|+++.+ |+|+|||+++.+.. || +|++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 99999999999864 99 9999999999999999999853
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-43 Score=387.86 Aligned_cols=208 Identities=29% Similarity=0.466 Sum_probs=175.9
Q ss_pred cEEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhccc
Q 047171 327 EIEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQM 393 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i 393 (1224)
-|+++||+|+|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 37888888888642 256799999999999999999999999999999999999994 33445678899
Q ss_pred EEecCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc
Q 047171 394 GLVNQEP--ILFSTSIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI 469 (1224)
Q Consensus 394 ~~v~Q~~--~lf~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~ 469 (1224)
|||+|+| .+|..||+||+.|+.. ..+.++..+. +.+.++.+ |++....+.+.+||||||||++|||||+
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 5788899999998632 2233333322 23345555 6666677888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998864 38999999999999976 999999999999999999999765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=398.51 Aligned_cols=208 Identities=31% Similarity=0.544 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCC--------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---H
Q 047171 327 EIEFKDVDFSYPTR--------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---L 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~--------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 389 (1224)
-|+++||+++|+.. ++++++||+||||||||||+++|+|+++|++|+|.++|+++..++... +
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 58999999999531 356799999999999999999999999999999999999999988655 4
Q ss_pred hcccEEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 390 RSQMGLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
|++||||+|++.+|+. ||+||+.++.. ..+.++..+. +.+.++.+ |++......+.+|||||||||+|||
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~-----v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH-----HHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence 7889999999999876 99999998632 2233332222 23344444 6666778889999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||+.+|++||||||||+||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998864 48999999999999976 999999999999999999999876
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=379.95 Aligned_cols=207 Identities=25% Similarity=0.452 Sum_probs=175.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH-hcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL-RSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~~v 396 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.... |++||||
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 6777777777542 3577999999999999999999999999999999999999988776554 5569999
Q ss_pred cCCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 397 NQEPILFST-SIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
+|++.+|+. |++||+.++. +....++..+. +++.++.++ |++...++++.+||||||||++|||||+.+|++
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999999987 9999999874 22222222222 234566664 466778888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999998865 68999999999988755 99999999999999999999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=383.03 Aligned_cols=200 Identities=29% Similarity=0.438 Sum_probs=163.9
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH----hcccEEecCCCCCCc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQEPILFS 404 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~ 404 (1224)
.++||||+. ++++++||+||||||||||+++|+|+++|++|+|.++|+++..++...+ |++||||+|+|.+|+
T Consensus 20 ~L~~isl~i---~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 20 ALKNVNLNI---KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eEEeeeEEE---cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCC
Confidence 455666654 3577999999999999999999999999999999999999999887653 457999999999998
Q ss_pred c-cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 405 T-SIKENILIGK-----PGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 405 ~-ti~~ni~~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
. ||+||+.++. .....++..+ .+.+.+..+ |+... ..+.+.+||||||||++|||||+.+|++|||
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 169 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHC--CCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7 9999998742 1122222221 122334444 44443 3778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHH
Q 047171 478 DEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|||||+||+.++..+.+.++++. + |+|+|+|||+++.++.||+|++|++|+|++.|+.+++
T Consensus 170 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999998874 3 8999999999997777999999999999999887665
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=385.03 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=171.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|+++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999951 24699999999999999999999999999999999999999999998 35789
Q ss_pred EEEecCCCCC-cccHHHHHccCCCC-------CCH---HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1057 ALVSQEPTLF-AGTIRQNIVYGKEV-------ATE---AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1057 ~~V~Qdp~LF-~gTIreNl~~~~~~-------~~d---eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+||||+|.+| ..|++||+.++... ... +++.++++..++ +........+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-----------THLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCC-----------hHHhcCChhhCCHHHHHHH
Confidence 9999999887 67999999886311 122 234444444443 3334445668999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQ-KADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+ ++.|++++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999998753 899999999999985 599999999999 9999999987
Q ss_pred h
Q 047171 1203 S 1203 (1224)
Q Consensus 1203 ~ 1203 (1224)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=394.42 Aligned_cols=206 Identities=29% Similarity=0.441 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.||||+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~Vf 81 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVF 81 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEEC
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEe
Confidence 5666666666532 36779999999999999999999999999999999999999887765 46799999
Q ss_pred CCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.||+. ||+|||.|+.. ..+.++..+ .+.+.++.+ |++.....++.+|||||||||+|||||+.+|++
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 99999976 99999998742 223333322 223445555 666677888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
||||||||+||+.++..+.+.|+++. .|.|+|+|||+++++.. ||+|++|++|+|++.|+++|+...+
T Consensus 155 LLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999998864 38999999999999876 9999999999999999999998763
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=391.16 Aligned_cols=207 Identities=29% Similarity=0.488 Sum_probs=170.8
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC--CHHHHhcccEE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL--QLKWLRSQMGL 395 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~i~~ 395 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+. .....+++|||
T Consensus 5 l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 6666777766532 35779999999999999999999999999999999999998321 22345678999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |++.....++.+|||||||||+|||||+.+|
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ-----RIEAMLELT--GISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHH-----HHHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999975 999999998532 12222221 122334444 6666778888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||||||||+||+.+...+.+.+.+. ..|+|+|+|||+++++.. ||||++|++|+|++.|+++|+...
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999998877654 358999999999999876 999999999999999999999876
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=376.09 Aligned_cols=208 Identities=33% Similarity=0.504 Sum_probs=175.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i~ 394 (1224)
-|+++||+|+|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++||
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 48888888888642 367799999999999999999999999999999999999985 334556788899
Q ss_pred EecCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 395 LVNQEPILFST-SIKENILIGK---PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 395 ~v~Q~~~lf~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
||+|++.+|+. ||+||+.++. ...+.++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 99999999876 9999998852 112222211 1233455555 66666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998864 58999999999999875 999999999999999999999764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=379.97 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
-|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++||
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 37777777777543 35779999999999999999999999999999999999999999998899999999
Q ss_pred cCCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc-----
Q 047171 397 NQEPIL-FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR----- 470 (1224)
Q Consensus 397 ~Q~~~l-f~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~----- 470 (1224)
+|++.+ |+.||+||+.++......++..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQ-----ALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHH-----HHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 999977 56799999998753221111111 122333444 45555666778999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 471 -DPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 471 -~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+|++||||||||+||+.++..+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 999999999999999999999999998864 3 5799999999999875 999999999999999999998753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=375.19 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=174.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 396 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...|++||||
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7888888888642 3577999999999999999999999999999999999999987764 3457789999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCC--CCHHH--------HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHH
Q 047171 397 NQEPILFST-SIKENILIGKPG--ASMET--------VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~--~~~~~--------~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
+|++.+|+. ||+||+.++... ..... .........+.+.++.+ |++....+++.+||||||||++||
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHHHHHH
Confidence 999998864 999999986421 11000 00011122345566766 777778888999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
|||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999998864 48999999999999865 99999999999999999998
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=370.27 Aligned_cols=194 Identities=20% Similarity=0.321 Sum_probs=165.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+++
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 699999999995 3 6999999999999999999999999999999999999999999999999886 368899
Q ss_pred EEEecCCCCCcc-cHHHHHccCCC----CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFAG-TIRQNIVYGKE----VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1057 ~~V~Qdp~LF~g-TIreNl~~~~~----~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+||||+|.+|.+ |++||+.++.. ...++++.++++.. |++.. ...+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987521 12244555554443 45445 566778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~I 1192 (1224)
+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47899999999999987 66665 555766
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=369.56 Aligned_cols=199 Identities=31% Similarity=0.484 Sum_probs=168.8
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++||||+.+ + ++++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..|++||||+|++.+|+. |++
T Consensus 15 l~~isl~i~---~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~ 88 (240)
T 2onk_A 15 RLNVDFEMG---R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVY 88 (240)
T ss_dssp EEEEEEEEC---S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHH
T ss_pred EeeeEEEEC---C-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHH
Confidence 667777653 4 699999999999999999999999999999999999987643 346789999999999876 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~ 488 (1224)
||+.++........ . ...+.+.++.+ |++........+||||||||++|||||+.+|++||||||||+||+.+
T Consensus 89 enl~~~~~~~~~~~---~--~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 89 RNIAYGLRNVERVE---R--DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HHHHTTCTTSCHHH---H--HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHHHHcCCch---H--HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 99999753222111 0 22234556666 66666777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 489 ERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 489 ~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 162 ~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 162 KGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999998864 38999999999998865 999999999999999999998764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=372.81 Aligned_cols=208 Identities=24% Similarity=0.397 Sum_probs=175.0
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
+.|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++|||
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEE
Confidence 358888888888642 3677999999999999999999999999999999999999876 45667889999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++.....++.+||||||||++|||||+.+|
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 165 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNP 165 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999998876 99999987521 122222111 123344444 5666667788899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 166 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 166 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999998864 58999999999999987 999999999999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=386.44 Aligned_cols=205 Identities=30% Similarity=0.474 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++||||+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~ 81 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVF 81 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEEC
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEe
Confidence 5555666655421 35779999999999999999999999999999999999999877653 57899999
Q ss_pred CCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+. ||+|||.|+.... +.++. ...+.+.++.+ |++.....+..+||||||||++|||||+.+|++
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~-----~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEV-----EKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHT-----THHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999976 9999999975321 11111 11233445555 666667788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.+.
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998864 38999999999999865 999999999999999999999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=378.77 Aligned_cols=201 Identities=25% Similarity=0.423 Sum_probs=164.7
Q ss_pred ccEEEEeEEEECCC--------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 326 GEIEFKDVDFSYPT--------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~--------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
+.|+++||+|.+.. -++++++||+||||||||||+++|+|+++|++|+|.++| +|+||+
T Consensus 39 ~~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~ 105 (290)
T 2bbs_A 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 105 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEEC
T ss_pred ceEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEe
Confidence 35777777775421 136779999999999999999999999999999999998 499999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 047171 398 QEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLL 477 (1224)
Q Consensus 398 Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ilil 477 (1224)
|++.+|++||+||+. +.. .....+.++++..++.+++..+|.++++.+++++.+||||||||++|||||+.+|++|||
T Consensus 106 Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 183 (290)
T 2bbs_A 106 QNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (290)
T ss_dssp SSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred CCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999999999998 542 234445556677788888999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhh
Q 047171 478 DEATSALDAESERIVQEAL-DQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||+||+.++..+.+.+ +++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 184 DEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 184 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp ESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 9999999999999998864 444568999999999999888999999999999999999998764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=367.29 Aligned_cols=200 Identities=25% Similarity=0.418 Sum_probs=165.9
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---Hh-ccc
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LR-SQM 393 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r-~~i 393 (1224)
|+++|++++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+... +| ++|
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 5666666666432 257799999999999999999999999999999999999998877543 34 689
Q ss_pred EEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 394 GLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|||+|++.+|+. |++||+.++.. ....++. ...+.+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-----KERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998865 99999988531 1121111 11234455655 66666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEeCceEEeecC
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~ 534 (1224)
+|++||||||||+||+.+++.+.+.++++. +|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999998864 5899999999999886799999999999999886
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=372.85 Aligned_cols=207 Identities=31% Similarity=0.534 Sum_probs=171.3
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC----------CCH-
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK----------LQL- 386 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----------~~~- 386 (1224)
|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++.. ++.
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChh
Confidence 5666666666432 3577999999999999999999999999999999999999862 443
Q ss_pred --HHHhcccEEecCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHH
Q 047171 387 --KWLRSQMGLVNQEPILFST-SIKENILIGK---PGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQK 459 (1224)
Q Consensus 387 --~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~ 459 (1224)
..+|++||||+|++.+|+. ||+||+.++. .....++.. ..+.+.++.+ |++.. ...++.+||||||
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LSgGq~ 159 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLSGGQQ 159 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSCHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCCHHHH
Confidence 3467789999999998876 9999998852 112222211 1233455555 56655 6778899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 460 qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 239 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998864 58999999999999875 99999999999999999999
Q ss_pred HHhh
Q 047171 538 LMQM 541 (1224)
Q Consensus 538 l~~~ 541 (1224)
+...
T Consensus 240 ~~~~ 243 (262)
T 1b0u_A 240 VFGN 243 (262)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=387.53 Aligned_cols=205 Identities=32% Similarity=0.494 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++||||+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~ 81 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVF 81 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEEC
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEe
Confidence 5666777776532 35779999999999999999999999999999999999999877653 56899999
Q ss_pred CCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+. ||+|||.|+.. ....++.. ..+.+.++.+ |++.....+..+||||||||++|||||+.+|++
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 154 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV 154 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999976 99999998632 12222221 1233445555 666667788899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 155 LLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999988643 8999999999999865 999999999999999999999875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=384.35 Aligned_cols=206 Identities=31% Similarity=0.514 Sum_probs=175.5
Q ss_pred cEEEEeEEEEC-CCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 327 EIEFKDVDFSY-PTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 327 ~i~~~~v~f~y-~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
.|+++||+++| ++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++|||
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 91 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGL 91 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEE
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEE
Confidence 58999999999 543 2567999999999999999999999999999999999999987654 3678999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|++.+|+. ||+|||.|+.. ..+.++.. ..+.+.++.+ |++.....+..+||||||||++|||||+.+|
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P 164 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRP 164 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999999976 99999998632 12222221 1233445555 6666677888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
++||||||||+||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998864 38999999999999866 999999999999999999999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=385.76 Aligned_cols=205 Identities=25% Similarity=0.400 Sum_probs=169.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++||||+
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~ 89 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVF 89 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEe
Confidence 7788888888542 35779999999999999999999999999999999999999877654 56899999
Q ss_pred CCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.+|+. ||+|||.|+... .+.++.. ..+.+.++.+ |++.....+..+||||||||+||||||+.+|++
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEID-----KRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHH-----HHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999975 999999998542 2232221 1233455555 666677888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999988642 8999999999999865 999999999999999999999875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=375.60 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=173.8
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC--CCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK--KLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~i~ 394 (1224)
-|+++||+|+|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++||
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 48899999999643 357799999999999999999999999999999999999997 777777888999
Q ss_pred EecCCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHH
Q 047171 395 LVNQEPIL-FST--SIKENILIGKPG-------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI 464 (1224)
Q Consensus 395 ~v~Q~~~l-f~~--ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriai 464 (1224)
||+|++.+ |.. ||+||+.++... ...+ . ...+.+.++.+ |++.....++.+||||||||++|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE-I-----RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHH-H-----HHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHH-H-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHH
Confidence 99999864 544 999999987421 1111 1 11233455555 66666788889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeE--EEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 465 ARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTM--IIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 465 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~--i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+ |+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998864 48999 999999999865 99999999999999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=381.28 Aligned_cols=197 Identities=31% Similarity=0.488 Sum_probs=166.7
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
.++|++|+. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||||+|++.+|+. ||
T Consensus 15 ~l~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 15 SLDNLSLKV---ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp EEEEEEEEE---CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCH
T ss_pred EEeeeEEEE---cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCH
Confidence 345555544 3567999999999999999999999999999999999999987654 36789999999999976 99
Q ss_pred HHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 408 KENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 408 ~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+|||.|+.. ....+++ .+.++.+ |++.....+..+||||||||++|||||+.+|++||||||||+|
T Consensus 90 ~enl~~~~~~~~~~~~~~v---------~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRV---------LDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHH---------HHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred HHHHHHHHHHcCCCHHHHH---------HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 999998631 0111223 3344444 5555667788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 485 DAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999998864 38999999999998865 999999999999999999999875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=368.32 Aligned_cols=196 Identities=27% Similarity=0.497 Sum_probs=164.6
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC--CCCccc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP--ILFSTS 406 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--~lf~~t 406 (1224)
.++||||+.+ ++++++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++||||+|+| .+++.|
T Consensus 22 vl~~vsl~i~---~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~~~~t 95 (266)
T 2yz2_A 22 ALENVSLVIN---EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAER 95 (266)
T ss_dssp EEEEEEEEEC---TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGCCCSS
T ss_pred eeeeeEEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhcCCCc
Confidence 3555555542 5679999999999999999999999999999999999998642 6678899999996 467789
Q ss_pred HHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhcccccc--ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 047171 407 IKENILIGKPG-----ASMETVVKAAQAANVHDFIMKLNDGYE--TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDE 479 (1224)
Q Consensus 407 i~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE 479 (1224)
++||+.++... ...+++.++++.. |++ ........+||||||||++|||||+.+|++|||||
T Consensus 96 v~enl~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 96 VFDEVAFAVKNFYPDRDPVPLVKKAMEFV-----------GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp HHHHHHHTTTTTCTTSCSHHHHHHHHHHT-----------TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHc-----------CcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 99999987421 1123344444333 444 44566678999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 480 ATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 480 ~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999998874 58999999999999976 999999999999999999998765
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=384.39 Aligned_cols=202 Identities=29% Similarity=0.473 Sum_probs=168.4
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC---HHHHhcccEEecCCCCCCcc-
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQMGLVNQEPILFST- 405 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~i~~v~Q~~~lf~~- 405 (1224)
++||||.. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ....+++||||+|++.+|+.
T Consensus 21 l~~vsl~i---~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 21 LDNVNINI---ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEE---CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred EeceEEEE---CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 45555544 256799999999999999999999999999999999999986521 22346789999999999976
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 406 SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 406 ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
||+|||.|+... .+.++..+ .+.+.++.+ |++.....+..+||||||||++|||||+.+|++||||||||+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~ 170 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 999999997532 22222211 233445555 666667788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 484 LDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 484 lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|+...
T Consensus 171 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp SCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999998864 38999999999999865 999999999999999999999875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=385.94 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=170.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC------CCHHHHhc
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK------LQLKWLRS 391 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~------~~~~~~r~ 391 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+. .++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r 81 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDR 81 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGS
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHC
Confidence 5666666666432 2567999999999999999999999999999999999999876 543 357
Q ss_pred ccEEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 392 QMGLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 392 ~i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+||||+|++.+|+. ||+|||.|+.. ....++..+ .+.+.++.+ |++.....+..+||||||||+||||||
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHHHH
Confidence 89999999999965 99999998632 122222211 223444444 666667788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+|++||||||||+||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998864 38999999999999865 999999999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=362.33 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=169.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++||||+.+ ++++++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+|++||||+|++.+|.. |++
T Consensus 16 l~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 16 LGPLSGEVR---AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp EEEEEEEEE---TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EeeeEEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 566666653 57799999999999999999999999999 9999999999888888889999999999998865 999
Q ss_pred HHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC-------EEEEeCC
Q 047171 409 ENILIGKP-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK-------ILLLDEA 480 (1224)
Q Consensus 409 ~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~-------ililDE~ 480 (1224)
||+.++.. ..+.+++.+ .++.+ |++.....++.+||||||||++|||||+.+|+ +||||||
T Consensus 92 e~l~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEP 160 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLND---------VAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160 (249)
T ss_dssp HHHHTTCSSTTCHHHHHH---------HHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESST
T ss_pred HHHHHhhccCCcHHHHHH---------HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECC
Confidence 99999742 112333333 33333 55556677889999999999999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhh-ccCEEEEEeCceEEeecChHHHHh
Q 047171 481 TSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIR-KADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 481 ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 161 MNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998864 5899999999999985 599999999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=365.44 Aligned_cols=203 Identities=26% Similarity=0.416 Sum_probs=160.1
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEECCEecCCCCHHHH-hcccE
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERF--YDPVKGNILLDGHKIKKLQLKWL-RSQMG 394 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 394 (1224)
|+++||+|+|++. +++++++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... |..++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 83 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF 83 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence 5566666666432 35779999999999999999999998 89999999999999988876554 45699
Q ss_pred EecCCCCCCcc-cHHHHHhcCCC---C--CCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCC-CChHHHHHHHHHH
Q 047171 395 LVNQEPILFST-SIKENILIGKP---G--ASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQ-LSGGQKQRIAIAR 466 (1224)
Q Consensus 395 ~v~Q~~~lf~~-ti~~ni~~g~~---~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~-LSgGq~qriaiAR 466 (1224)
||+|+|.+|++ |++||+.++.. . ...++.. ..+.+.++.+ |++ ........+ ||||||||++|||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 99999999876 99999987521 0 1111111 1223444544 553 344556667 9999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc--cCEEEEEeCceEEeecChHH
Q 047171 467 ALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK--ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 467 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~--ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999998875 58999999999999876 59999999999999999873
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=362.16 Aligned_cols=191 Identities=18% Similarity=0.323 Sum_probs=164.4
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE-EecCCCCCCcccH
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG-LVNQEPILFSTSI 407 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti 407 (1224)
.++||+|+. + +++++|+||||||||||+++|+|++ |++|+|.++|+++... .. |++|+ ||+|++.+ +.|+
T Consensus 20 il~~vsl~i---~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv 90 (263)
T 2pjz_A 20 SLENINLEV---N-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTV 90 (263)
T ss_dssp EEEEEEEEE---C-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBH
T ss_pred eEEeeeEEE---C-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcH
Confidence 467777765 4 6799999999999999999999999 9999999999998754 23 77899 99999998 8899
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhcccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 408 KENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 408 ~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+||+.++.+ ....+++ .+.++.+ |++ ...+.++.+||||||||++|||||+.+|++||||||||+|
T Consensus 91 ~enl~~~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 91 NDIVYLYEELKGLDRDLF---------LEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHHTCCCHHHH---------HHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHHhhhhcchHHHHH---------HHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 999988532 2223333 3445555 666 7778889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhc-cC-EEEEEeCceEEeecChHHHHhh
Q 047171 485 DAESERIVQEALDQASQGRTMIIIAHRLSTIRK-AD-LIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~-ad-~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|+.+.+.+.+.|+++.+ |+|++||+++.+.. || +|++|++|++++.|+++++.+.
T Consensus 160 D~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999988755 99999999999865 99 9999999999999999998754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=358.84 Aligned_cols=207 Identities=22% Similarity=0.316 Sum_probs=169.9
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEECCEecCCCCHHHH-hccc
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERF--YDPVKGNILLDGHKIKKLQLKWL-RSQM 393 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~~i 393 (1224)
-|+++||+|+|++. +++++++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..|
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 48888888888642 36779999999999999999999999 57999999999999988776555 4569
Q ss_pred EEecCCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhccccccc-cccCCCC-CCChHHHHH
Q 047171 394 GLVNQEPILFST-SIKENILIGK---------PGASMETVVKAAQAANVHDFIMKLNDGYET-KVGQFGV-QLSGGQKQR 461 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~-~LSgGq~qr 461 (1224)
+||+|+|.+|+. |+.||+.++. +..+.++.. ..+.+.++.+ |+++ ....... +||||||||
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHT--TCCTTTTTSBTTTTCCHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHH
Confidence 999999998876 9999997532 111222211 1234556665 6654 3344444 599999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc--cCEEEEEeCceEEeecChHHH
Q 047171 462 IAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK--ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 462 iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~--ad~i~vl~~G~i~~~g~~~~l 538 (1224)
++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 58999999999999875 899999999999999999887
Q ss_pred Hh
Q 047171 539 MQ 540 (1224)
Q Consensus 539 ~~ 540 (1224)
..
T Consensus 253 ~~ 254 (267)
T 2zu0_C 253 KQ 254 (267)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=354.79 Aligned_cols=191 Identities=26% Similarity=0.357 Sum_probs=158.2
Q ss_pred EEEEeEEEECC-CC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYP-TR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~-~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
|+++||+++|+ +. +++++++|+||||||||||+++|+|+++|++|+|. ++++||||
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v 71 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFV 71 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEE
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEE
Confidence 56667777765 32 25679999999999999999999999999999998 24579999
Q ss_pred cCCCCCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 397 NQEPILF-STSIKENILIGKPG-------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 397 ~Q~~~lf-~~ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+|++.+| ..||+||+.++... ...+ .. ..+.+.++.+ |++.....++.+||||||||++|||||
T Consensus 72 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH-DY-----QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIARAI 143 (253)
T ss_dssp CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH-HH-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCCCccCCCCCHHHHHHHhhhhhcccccCCCHH-HH-----HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999887 56999999987421 1111 11 1123344444 566667778899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHh
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
+.+|++||||||||+||+.+.+.+.+.|.++. + |+|+|++||+++.+.. ||+|++|++|+ ++.|+++++.+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999998864 3 8999999999999854 99999999999 99999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=339.96 Aligned_cols=185 Identities=18% Similarity=0.323 Sum_probs=152.8
Q ss_pred cEEEEeEEEECCC---------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 327 EIEFKDVDFSYPT---------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 327 ~i~~~~v~f~y~~---------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
.|+++||+++|++ -+++++++|+||||||||||+++|+|+++|++|+|.++|+++. ..|+.|+||+
T Consensus 10 ~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~ 84 (214)
T 1sgw_A 10 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLP 84 (214)
T ss_dssp EEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEEC
T ss_pred eEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEe
Confidence 4788888888854 0256799999999999999999999999999999999999986 2578899999
Q ss_pred CCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 398 QEPILFST-SIKENILIGKP----GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|+|.+|.. |++||+.++.. ....+++. +.++.+ |++.. ++++.+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIM---------DALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH---------HHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH---------HHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999876 99999988521 11122232 334444 67666 7888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceE
Q 047171 473 KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i 529 (1224)
++||||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999998764 58999999999999987 66654 556666
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=361.53 Aligned_cols=236 Identities=15% Similarity=0.201 Sum_probs=191.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCcccEEEEEEEEECCC
Q 047171 910 VSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRKSEIDPEDPKASEDIEEPTKGFIELKNVFFSYPS 989 (1224)
Q Consensus 910 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~vsf~Y~~ 989 (1224)
.+.+.+.+++.+... ..++..+...+..+.++..+.+|+.++++.+++..... . ...+..+.|+++||+|+|+
T Consensus 40 ~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~---~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 40 GSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G---SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C---CTHHHHHHHHHTTCCHHHH-
T ss_pred CccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C---cccccCCeEEEEEEEEEcC-
Confidence 344455444444333 47788888999999999999999999998654322110 0 1011234699999999995
Q ss_pred CCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 990 RPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 990 ~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
.++|+|+||+|++||++|||||||||||||+++|+|++ +|+| +++++|+|.+|++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 46999999999999999999999999999999999999 7998 45789999999999
Q ss_pred HHH-HHccCCCCCCHHHHHHHHHHHhHHHHHHh-cccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCC
Q 047171 1070 IRQ-NIVYGKEVATEAEIRKAAVLANAHEFISS-TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1070 Ire-Nl~~~~~~~~deei~~al~~a~l~~~I~~-lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaL 1147 (1224)
+++ ||.++ ++.++ ++++++.. +|+|+| |.+|||||||| |||++++|+||| ||+|
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 998 99986 44443 34677777 899998 67899999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHHhhc
Q 047171 1148 DSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQAS 1219 (1224)
Q Consensus 1148 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~q~~ 1219 (1224)
|+++++.|+. +|||+++++.||+| +|++|+|++.|+|++| ++.|+++|..+..
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el-----~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW-----KSFFVRLWGRLDL 277 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH-----HHHHHHSTTTTTC
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH-----HHHHHHHHHHccc
Confidence 9999988862 39999999999999 9999999999999999 3789999876543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-34 Score=354.71 Aligned_cols=170 Identities=12% Similarity=0.022 Sum_probs=125.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
++.+++++.|+.- ..+| +..+++|+.++|+|+||||||||++.+++...|. |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 3455676666310 1233 4499999999999999999999999999998874 53 1256
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
+++|++. .++++|.... ..+.++ +.. .|+..........|||||+||+++||++..+|++
T Consensus 315 ~~~ee~~---~~l~~~~~~~--g~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l 374 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW--GMDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR 374 (525)
T ss_dssp EESSSCH---HHHHHHHHTT--SCCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCH---HHHHHHHHHc--CCCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE
Confidence 6777762 3566665321 112111 111 1333334445567999999999999999999999
Q ss_pred EEEeccCCCCCHH-----HHHHHHHHHHHhc-CCCeEEEEccCc----------hhhhh-cCEEEEEeCCE
Q 047171 1138 LLLDEATSALDSA-----SENLVQEALEKMM-VGRTCVVVAHRL----------STIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1138 LlLDEaTSaLD~~-----te~~I~~~l~~~~-~~~TvI~IaHrl----------~ti~~-aD~I~vl~~G~ 1191 (1224)
||+| ||++||.. ..+.+.+.++.+. .|+|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 375 lilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 375 IAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999 99999998 8888888887664 589999999998 66665 99999999886
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-31 Score=331.01 Aligned_cols=197 Identities=23% Similarity=0.324 Sum_probs=162.8
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
..+...|++++|+ +.++|+|+||+|++||++||+||||||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 3688889999995 3469999999999999999999999999999999995 654 5654321 124
Q ss_pred eEEEecCC-CCC-cccHHHHHccCCCCCCHHHHHHHHHHHhH-HHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1056 IALVSQEP-TLF-AGTIRQNIVYGKEVATEAEIRKAAVLANA-HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1056 i~~V~Qdp-~LF-~gTIreNl~~~~~~~~deei~~al~~a~l-~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++|++|++ .++ ..|+.||+.+..... ++++.++++..++ .+.. +.++ .+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~-------~~~~----~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMI-------AMPI----SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHH-------HSBG----GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhh-------cCCc----ccCCHHHHHHHHHHHHHh
Confidence 78999986 344 569999997521112 6677777777776 2332 2233 369999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV-EQGTQSSLLS 1203 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv-e~Gt~~eLl~ 1203 (1224)
.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|++++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 68999999999999976 9999999999997 5899999875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-32 Score=342.89 Aligned_cols=203 Identities=28% Similarity=0.428 Sum_probs=137.6
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHH---------------------HHHhcccCCC-------CceEEECCccC
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTII---------------------GLIERFYDPQ-------SGSVMVDERNI 1044 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~---------------------~lL~rl~~p~-------~G~I~idG~di 1044 (1224)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8889999988 55667777655
Q ss_pred CCCCHHHHhcceEEEecCCCCC--------------------cccHHHHHccCCCC-CCH--HH-----HHHHHHHHhHH
Q 047171 1045 KSYNLRKLRSCIALVSQEPTLF--------------------AGTIRQNIVYGKEV-ATE--AE-----IRKAAVLANAH 1096 (1224)
Q Consensus 1045 ~~~~~~~lR~~i~~V~Qdp~LF--------------------~gTIreNl~~~~~~-~~d--ee-----i~~al~~a~l~ 1096 (1224)
... .|+.+++|+|.+.++ ..|++||+.++... ..+ .+ +.++.+..+
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG-- 184 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH--
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH--
Confidence 432 345666776665432 45899999875211 011 11 111111111
Q ss_pred HHHHhcccccccc-cCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 047171 1097 EFISSTEDGYDTY-CGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172 (1224)
Q Consensus 1097 ~~I~~lp~gldt~-vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 1172 (1224)
.+..+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+||
T Consensus 185 -~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 185 -FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp -HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 12222 33221 234456799999999999999999988 999999999999999999999998875 589999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEEEecChhHHhhc
Q 047171 1173 HRLSTIQKADNIVVI------KNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1173 Hrl~ti~~aD~I~vl------~~G~Ive~Gt~~eLl~~ 1204 (1224)
|+++.+..||+|++| ++|++++.|+++++.+.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 999998889999999 89999999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-32 Score=333.57 Aligned_cols=193 Identities=21% Similarity=0.305 Sum_probs=154.6
Q ss_pred EEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE---------EECCccCCCCCHHH
Q 047171 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV---------MVDERNIKSYNLRK 1051 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I---------~idG~di~~~~~~~ 1051 (1224)
+||+++|+.. ..+|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .++|.++.......
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999632 24899999 999999999999999999999999999999999996 45676654321111
Q ss_pred --HhcceEEEecCCC----CCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1052 --LRSCIALVSQEPT----LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1052 --lR~~i~~V~Qdp~----LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
.+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+ .......+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~-----------~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELEN-----------VLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTT-----------GGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCc-----------hhCCChhhCCHHHHHHH
Confidence 2346889998743 45579999997532 1234556665555432 22233456999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G 1190 (1224)
+|||||+++|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998875 48999999999999876 9999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-32 Score=329.11 Aligned_cols=196 Identities=21% Similarity=0.315 Sum_probs=153.1
Q ss_pred EEE-EEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE---------EECCccCCCC
Q 047171 978 IEL-KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV---------MVDERNIKSY 1047 (1224)
Q Consensus 978 I~~-~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I---------~idG~di~~~ 1047 (1224)
.++ +||+++|++. .++|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 5899999632 25899999 999999999999999999999999999999999996 4577655432
Q ss_pred CHHH--HhcceEEEecCCCC----CcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1048 NLRK--LRSCIALVSQEPTL----FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1048 ~~~~--lR~~i~~V~Qdp~L----F~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.... .+..+++++|+..+ +.+|++||+.... ..+++.++++..++. ........+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~-----------~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELE-----------NVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCT-----------TTTTSBGGGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCC-----------hhhhCChhhCCHHH
Confidence 1111 23468899997543 3469999986421 123455555555442 22223345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G 1190 (1224)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998875 48999999999999876 9999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-35 Score=328.14 Aligned_cols=227 Identities=14% Similarity=0.181 Sum_probs=182.2
Q ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccEEEEeEEEECC
Q 047171 259 ERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYP 338 (1224)
Q Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 338 (1224)
.+..+-+...+|+.+... ..|+..+...+..++++..+.+|+.++++.+++..... ...+...+.|+++||+|+|+
T Consensus 37 ~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 37 LAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE---GSWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS---CCTHHHHHHHHHTTCCHHHH
T ss_pred HhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC---CcccccCCeEEEEEEEEEcC
Confidence 345566778888776555 47899999999999999999999999998654322111 11112234588999999995
Q ss_pred ---------CCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 339 ---------TRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 339 ---------~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
.-+++++++||||||||||||+++|+|++ +|+| +++|+|++++|++|+++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence 12567899999999999999999999999 8988 46789999999999998
Q ss_pred -HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-ccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 410 -NILIGKPGASMETVVKAAQAANVHDFIMK-LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 410 -ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
||.++ +++++ ++++++.. +|+|++ |.+|||||||| |||++++|+||| ||+||++
T Consensus 172 ~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~ 227 (305)
T 2v9p_A 172 TRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQ 227 (305)
T ss_dssp CSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCST
T ss_pred HhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHH
Confidence 99997 33332 34678887 999988 78999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHH
Q 047171 488 SERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555 (1224)
Q Consensus 488 ~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~ 555 (1224)
+++.+.. +|||+++++.||+| +|++|+|++.|+|+++ ++.|++++..
T Consensus 228 ~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el-------~~~y~~l~~~ 274 (305)
T 2v9p_A 228 AEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW-------KSFFVRLWGR 274 (305)
T ss_dssp TCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH-------HHHHHHSTTT
T ss_pred HHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH-------HHHHHHHHHH
Confidence 9888752 29999999999999 9999999999999999 3577777653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=320.12 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=155.2
Q ss_pred cEEEEeEEEECCCC---------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 327 EIEFKDVDFSYPTR---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~---------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
.++++|++++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 269 ~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~~~ 336 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSYKP 336 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEEEC
T ss_pred eEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEeec
Confidence 47888888888542 357899999999999999999999999999999998763 589999
Q ss_pred CCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPIL-FSTSIKENILIGKPGA--SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~l-f~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|++.. +..||+||+.+..... ...+ .+.+.++.+ |+.........+||||||||++|||||+.+|+|
T Consensus 337 q~~~~~~~~tv~~~l~~~~~~~~~~~~~--------~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l 406 (538)
T 3ozx_A 337 QRIFPNYDGTVQQYLENASKDALSTSSW--------FFEEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATLAKEADL 406 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHCSSTTCTTSH--------HHHHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred hhcccccCCCHHHHHHHhhhhccchhHH--------HHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99864 4679999998743211 1111 012333444 556667778899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeC--ceEEeecChHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQS--GRVIESGSHDVLM 539 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~--G~i~~~g~~~~l~ 539 (1224)
|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||+||++ |++...+++.++.
T Consensus 407 LlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999998864 58999999999999976 999999986 5566666665543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-30 Score=313.09 Aligned_cols=195 Identities=18% Similarity=0.302 Sum_probs=148.9
Q ss_pred EEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-----------EECCccCCCCCHH
Q 047171 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-----------MVDERNIKSYNLR 1050 (1224)
Q Consensus 982 ~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-----------~idG~di~~~~~~ 1050 (1224)
|++++|.. ....|++++ .+++||.+||+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 46889963 234677777 699999999999999999999999999999999998 3455544433333
Q ss_pred HHhcceE--EEecCCCC----Cc---ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1051 KLRSCIA--LVSQEPTL----FA---GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1051 ~lR~~i~--~V~Qdp~L----F~---gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.+++.+. +.+|.... +. .++.+++.... ...++++.++++..++ +........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQL-----------ENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTC-----------TGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCC-----------cchhCCChHHCCHHH
Confidence 4444443 33443221 11 26777765432 2245666666665554 333344556799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 047171 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~ 1191 (1224)
|||++|||||+++|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999876 47899999999999976 99999998764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-29 Score=297.87 Aligned_cols=201 Identities=19% Similarity=0.249 Sum_probs=153.0
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC--------------------------------------CCCce
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD--------------------------------------PQSGS 1036 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--------------------------------------p~~G~ 1036 (1224)
+++++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966553 45789
Q ss_pred EEECCccCCCCCHHHHhcc-eEEEecCCCCCcccHHHHHccCCCCCCH--------------------------------
Q 047171 1037 VMVDERNIKSYNLRKLRSC-IALVSQEPTLFAGTIRQNIVYGKEVATE-------------------------------- 1083 (1224)
Q Consensus 1037 I~idG~di~~~~~~~lR~~-i~~V~Qdp~LF~gTIreNl~~~~~~~~d-------------------------------- 1083 (1224)
+++||.+++..++..+++. +++++|++.++-.+..++..+.+.....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777887777 8999999988877665554433221110
Q ss_pred ------------HHHHHHHH------H-------HhHHHHHHhc--c----------------ccccc---ccCCCCCC-
Q 047171 1084 ------------AEIRKAAV------L-------ANAHEFISST--E----------------DGYDT---YCGERGVQ- 1116 (1224)
Q Consensus 1084 ------------eei~~al~------~-------a~l~~~I~~l--p----------------~gldt---~vge~G~~- 1116 (1224)
+++.+... . ..+.+.+..+ | .|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00000000 0 0111112221 1 12222 33444444
Q ss_pred -------CChHHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 047171 1117 -------LSGGQKQRIALARAVLKNP--MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1117 -------LSGGQrQRlaLARAll~~p--~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
||||||||++|||+|+.+| +||||||||++||+++.+.|.+.|+++.+++|||+|||+++.+..||+|++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988889999999999988889999999
Q ss_pred ----eCCEEEEec
Q 047171 1188 ----KNGKVVEQG 1196 (1224)
Q Consensus 1188 ----~~G~Ive~G 1196 (1224)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-32 Score=321.77 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=155.8
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-e-EEECCccCCCCCHHHHh
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-S-VMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~-I~idG~di~~~~~~~lR 1053 (1224)
+.++++||+++|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 3578888888872 79999999999999999999999999999999999999 9 99998 1 37
Q ss_pred cceEEEecCCCCCc----ccHHHHHccCCCC---C-CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1054 SCIALVSQEPTLFA----GTIRQNIVYGKEV---A-TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~----gTIreNl~~~~~~---~-~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
+.+++|||++.+|. .|++||+ ++... . .++.+.++++.. |++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHH
Confidence 88999999996543 5899999 65321 0 111122222222 4444432 668999999999
Q ss_pred HHHHH--HccCCCE----EEEec-cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch------hhhh-cCE-----EEE
Q 047171 1126 ALARA--VLKNPMI----LLLDE-ATSALDSASENLVQEALEKMMVGRTCVVVAHRLS------TIQK-ADN-----IVV 1186 (1224)
Q Consensus 1126 aLARA--ll~~p~I----LlLDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~------ti~~-aD~-----I~v 1186 (1224)
+|||| |+++|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+.. ||+ |++
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 99999 9999999 99999 99999999 77777877765 789999999987 5544 999 999
Q ss_pred Ee-CCEEEEecChhHHhh
Q 047171 1187 IK-NGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1187 l~-~G~Ive~Gt~~eLl~ 1203 (1224)
|+ +|+|+ .|+++++.+
T Consensus 322 l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 322 IPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCTTCC-CCCHHHHHH
T ss_pred EeCCCcEE-ECCHHHHhh
Confidence 99 99999 999998854
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=308.20 Aligned_cols=107 Identities=34% Similarity=0.540 Sum_probs=95.7
Q ss_pred HHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 047171 434 DFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP---KILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIA 509 (1224)
Q Consensus 434 ~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~ 509 (1224)
+.+..+.-|+ ..+|+.+.+|||||||||+|||||+++| +||||||||++||+.+++.+++.|+++. +|+|+|+|+
T Consensus 787 ~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~ 865 (916)
T 3pih_A 787 QVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865 (916)
T ss_dssp HHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4555563343 3478999999999999999999999876 7999999999999999999999998864 689999999
Q ss_pred CCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 510 HRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 510 H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
|+++.++.||+|++| ++|+|+++|+|+|+++.
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999999 89999999999999986
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=273.40 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=146.3
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD--------------------------------------PVK 371 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~--------------------------------------~~~ 371 (1224)
+++++|..+ ++ +++|+||||||||||+++|.++.. +.+
T Consensus 51 l~~v~l~~~---~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 51 ITQLELELG---GG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp EEEEEEECC---SS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred eeeEEEecC---CC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 577788763 46 999999999999999999966553 457
Q ss_pred cEEEECCEecCCCCHHHHhcc-cEEecCCCCCCcccHHHHHhcCCCCCCH------------------------------
Q 047171 372 GNILLDGHKIKKLQLKWLRSQ-MGLVNQEPILFSTSIKENILIGKPGASM------------------------------ 420 (1224)
Q Consensus 372 G~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~ni~~g~~~~~~------------------------------ 420 (1224)
|++++||++++..+...+.+. +++++|++.++..+..++..|-......
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 899999999987666777666 8999999877755554443332111100
Q ss_pred --------------HHHHHHH------HH-------hcHHHHHHhc--cc----------------cccc---cccCCCC
Q 047171 421 --------------ETVVKAA------QA-------ANVHDFIMKL--ND----------------GYET---KVGQFGV 452 (1224)
Q Consensus 421 --------------~~~~~~~------~~-------~~~~~~i~~l--~~----------------g~~t---~~~~~g~ 452 (1224)
+++.+.+ +. ..+.+.+..+ |. |.+. .++.++.
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000000 00 0111222222 11 2222 3444444
Q ss_pred C--------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEE
Q 047171 453 Q--------LSGGQKQRIAIARALIRDP--KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIG 522 (1224)
Q Consensus 453 ~--------LSgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~ 522 (1224)
. ||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+|+|+|+|||+++.+..||+|+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEE
Confidence 4 8999999999999999999 99999999999999999999999999878999999999999888899999
Q ss_pred EE----eCceEEeec
Q 047171 523 VL----QSGRVIESG 533 (1224)
Q Consensus 523 vl----~~G~i~~~g 533 (1224)
+| ++|+++...
T Consensus 367 ~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 367 KVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEeccCCceEEEE
Confidence 99 999987653
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=264.01 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=144.7
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-----------------------------------------------
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF----------------------------------------------- 1029 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl----------------------------------------------- 1029 (1224)
++++|++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678899999 9999999999999999999833
Q ss_pred ---cCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCC----------------CHHHHHHH
Q 047171 1030 ---YDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVA----------------TEAEIRKA 1089 (1224)
Q Consensus 1030 ---~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~----------------~deei~~a 1089 (1224)
+.+.+|.+.+||.+++..+...++..+++.||+..++ .|++.+|+... |.. +.+++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2344678999999886666777777899999998765 89999998653 210 00112221
Q ss_pred HHHHh------------H-HHHHHhcccccccccC------CCCCCCChHHHHHHHHHHHHc----cCCCEEEEeccCCC
Q 047171 1090 AVLAN------------A-HEFISSTEDGYDTYCG------ERGVQLSGGQKQRIALARAVL----KNPMILLLDEATSA 1146 (1224)
Q Consensus 1090 l~~a~------------l-~~~I~~lp~gldt~vg------e~G~~LSGGQrQRlaLARAll----~~p~ILlLDEaTSa 1146 (1224)
....- + .+....++.|+++.++ .....||||||||++|||||. ++|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 11100 0 0001234556665443 234689999999999999996 78999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEE--EEEeCCEE-EEecChhH
Q 047171 1147 LDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNI--VVIKNGKV-VEQGTQSS 1200 (1224)
Q Consensus 1147 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I--~vl~~G~I-ve~Gt~~e 1200 (1224)
||+.+.+.+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999999999999887788999999998878889987 88888764 33334444
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=288.08 Aligned_cols=108 Identities=28% Similarity=0.473 Sum_probs=96.4
Q ss_pred HHHHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEE
Q 047171 432 VHDFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRD---PKILLLDEATSALDAESERIVQEALDQA-SQGRTMI 506 (1224)
Q Consensus 432 ~~~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~---~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i 506 (1224)
+.+.++.+ |+.. .+++...+|||||||||+|||+|+++ |+||||||||++||+.+.+.+.+.|+++ .+|.|+|
T Consensus 710 ~~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 710 ALDTLREV--GLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHc--CCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34566777 5544 46888999999999999999999996 7999999999999999999999999886 4689999
Q ss_pred EEeCCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 507 IIAHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 507 ~i~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
+|||+++.+..||+|++| ++|+|++.|+++++.+.
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999779999999 79999999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-26 Score=286.05 Aligned_cols=107 Identities=29% Similarity=0.517 Sum_probs=95.8
Q ss_pred HHHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEE
Q 047171 433 HDFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRDP---KILLLDEATSALDAESERIVQEALDQAS-QGRTMII 507 (1224)
Q Consensus 433 ~~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~~---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ 507 (1224)
.+.++.+ |+.. ..++...+|||||||||+|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+
T Consensus 826 ~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 826 LETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHT--TCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHc--CCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456666 5655 578889999999999999999999875 9999999999999999999999998764 6899999
Q ss_pred EeCCcchhhccCEEEEE------eCceEEeecChHHHHhh
Q 047171 508 IAHRLSTIRKADLIGVL------QSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 508 i~H~l~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~ 541 (1224)
|||+++.+..||+|++| ++|+|++.|+++++.+.
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 99999999889999999 78999999999999875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-28 Score=289.31 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=148.1
Q ss_pred cEEEEeEEEECCC----CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-E-EEECCEecCCCCHHHHhcccEEecCCC
Q 047171 327 EIEFKDVDFSYPT----RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-N-ILLDGHKIKKLQLKWLRSQMGLVNQEP 400 (1224)
Q Consensus 327 ~i~~~~v~f~y~~----~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 400 (1224)
-++++||+|+|++ -+++++++|+||||||||||+++|+|++.|++| + |++|| + .|+.++||||++
T Consensus 118 mi~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~ 188 (460)
T 2npi_A 118 MKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCC
T ss_pred hhhhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccch
Confidence 4677788887742 246789999999999999999999999999999 9 99998 2 367899999998
Q ss_pred CCCc----ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHH--hccCCCE
Q 047171 401 ILFS----TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA--LIRDPKI 474 (1224)
Q Consensus 401 ~lf~----~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARa--l~~~~~i 474 (1224)
.+|. .|++||+ |+........ ....+.+.+..+ |++.... +.+||||||||++|||| |+.+|++
T Consensus 189 ~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i 258 (460)
T 2npi_A 189 SATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQV 258 (460)
T ss_dssp EEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCccc
Confidence 6543 4899999 7642100000 000111122222 5555443 78999999999999999 9999999
Q ss_pred ----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcc------hhhc-cCE-----EEEEe-CceEEeecChH
Q 047171 475 ----LLLDE-ATSALDAESERIVQEALDQASQGRTMIIIAHRLS------TIRK-ADL-----IGVLQ-SGRVIESGSHD 536 (1224)
Q Consensus 475 ----lilDE-~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~------~~~~-ad~-----i~vl~-~G~i~~~g~~~ 536 (1224)
||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+.. ||+ |++|+ +|+++ .|+++
T Consensus 259 ~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 259 RRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp HHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred CcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 99999 99999999 66777776654 789999999988 5544 999 99999 99999 99998
Q ss_pred HHHh
Q 047171 537 VLMQ 540 (1224)
Q Consensus 537 ~l~~ 540 (1224)
++.+
T Consensus 335 ~~~~ 338 (460)
T 2npi_A 335 YKRS 338 (460)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8743
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-27 Score=254.12 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=103.4
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
..+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|++++||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589996 89999999999999999999999999 99999994 333321 2234688999999998 66
Q ss_pred HH-ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 047171 1073 NI-VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1073 Nl-~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
|+ .++.+. .+.+........+.+.+.. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 332110 0000000000112222221 1 2 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1152 ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1152 e~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
.+.+.+.|+++.+++|+| |||+++.+. ++...++|..
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 889999998874578999 999988664 3445566644
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-25 Score=251.43 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=133.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--------------------------------------------------CCCCcEE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY--------------------------------------------------DPVKGNI 374 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~--------------------------------------------------~~~~G~i 374 (1224)
.++|+||||||||||+++|..+. .+.+|.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~ 105 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELKRTGENTY 105 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEEEEETTSCEEE
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEEEEEcCCceEE
Confidence 89999999999999999998432 3446789
Q ss_pred EECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCC----------------CHHHHHHHHHHhc------
Q 047171 375 LLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGA----------------SMETVVKAAQAAN------ 431 (1224)
Q Consensus 375 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~----------------~~~~~~~~~~~~~------ 431 (1224)
++||.+++..+...+...+++.+|+..++ .+++.+|+... |.. +++++.+.....-
T Consensus 106 ~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~ 184 (322)
T 1e69_A 106 YLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFG 184 (322)
T ss_dssp EETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHHHHHHHHHHTS
T ss_pred EECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999886555666677899999988765 78999998753 211 1111222211100
Q ss_pred ------H-HHHHHhcccccccccc------CCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHH
Q 047171 432 ------V-HDFIMKLNDGYETKVG------QFGVQLSGGQKQRIAIARALI----RDPKILLLDEATSALDAESERIVQE 494 (1224)
Q Consensus 432 ------~-~~~i~~l~~g~~t~~~------~~g~~LSgGq~qriaiARal~----~~~~ililDE~ts~lD~~~~~~i~~ 494 (1224)
+ .+....++.|+++.++ ..+.+||||||||++|||||+ .+|++|||||||++||+.....+.+
T Consensus 185 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~ 264 (322)
T 1e69_A 185 GEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR 264 (322)
T ss_dssp CEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH
T ss_pred ceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 0 0011234556665432 345789999999999999996 7899999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCCcchhhccCEE--EEEeCceE
Q 047171 495 ALDQASQGRTMIIIAHRLSTIRKADLI--GVLQSGRV 529 (1224)
Q Consensus 495 ~l~~~~~~~t~i~i~H~l~~~~~ad~i--~vl~~G~i 529 (1224)
.++++.+++|+|+|||+.+.+..||++ ++|++|+.
T Consensus 265 ~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 265 LLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 998887789999999998877789987 88888864
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-24 Score=248.64 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=75.7
Q ss_pred CCCCCChHHHHHHHHHHHHc------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEE
Q 047171 1113 RGVQLSGGQKQRIALARAVL------KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIV 1185 (1224)
Q Consensus 1113 ~G~~LSGGQrQRlaLARAll------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~ 1185 (1224)
...+||||||||++|||||+ ++|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998875 5799999999999988899999
Q ss_pred EEeCCEEEE
Q 047171 1186 VIKNGKVVE 1194 (1224)
Q Consensus 1186 vl~~G~Ive 1194 (1224)
+|++|++++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-27 Score=253.53 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=121.5
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-HHHhcceEEEecCCCCCc-----
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL-RKLRSCIALVSQEPTLFA----- 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Qdp~LF~----- 1067 (1224)
.-|+||||+|++|+++||+||||||||||+++|.|++ | |+|.+ |+++...+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888755432 335788999999986664
Q ss_pred ------ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHH-----HHHHccCCC
Q 047171 1068 ------GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIAL-----ARAVLKNPM 1136 (1224)
Q Consensus 1068 ------gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaL-----ARAll~~p~ 1136 (1224)
+++++| .++. +++++.++++.. ....++ .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 334444 2332 234455544321 112222 5799999999999 999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKN 1189 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~ 1189 (1224)
+++|||||+++|.++++.|++.+.+..+++| ++| +..||+|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988777777 788 577999988764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-25 Score=228.90 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=108.7
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCC--CCcccHHHHHc
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT--LFAGTIRQNIV 1075 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~--LF~gTIreNl~ 1075 (1224)
|+||++++||.++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 233344 67788863 22333333221
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH---
Q 047171 1076 YGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE--- 1152 (1224)
Q Consensus 1076 ~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te--- 1152 (1224)
... ...+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 ------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 110 111234555555433 45699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHhc-CCCeEEEEccCchhhhhcCEE
Q 047171 1153 -------------NLVQEALEKMM-VGRTCVVVAHRLSTIQKADNI 1184 (1224)
Q Consensus 1153 -------------~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I 1184 (1224)
+.+++.|+++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77788766543 489999999999999888775
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-25 Score=228.12 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~ 1087 (1224)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999985 667887664443225678999999997 2233331 1000
Q ss_pred HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH-----HccCCCEEEEec--cCCCCCHHHHHHHHHHHH
Q 047171 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA-----VLKNPMILLLDE--ATSALDSASENLVQEALE 1160 (1224)
Q Consensus 1088 ~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA-----ll~~p~ILlLDE--aTSaLD~~te~~I~~~l~ 1160 (1224)
.+ .+..+++.+.+||||||||++|||| ++.+|++||||| ||+++|+.+.+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134566677899999999999996 999999999999 999999999999999997
Q ss_pred HhcCCCeEEEEcc---Cchhhhh-cCEEEEEeCCEEEE
Q 047171 1161 KMMVGRTCVVVAH---RLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1161 ~~~~~~TvI~IaH---rl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
+ .+.|+|+++| +++.+.. ||+ .+|+|.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677999986 6666665 777 5677776
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-26 Score=242.52 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=95.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHH-hcCCCCCCH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENI-LIGKPGASM 420 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni-~~g~~~~~~ 420 (1224)
++++++|+||||||||||+++|+|+ +|++|+|. +.++.. +....|++||||+|++ +||+ .++.+. .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~enl~~~~~~~--~ 87 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEKIDPYLRPL--H 87 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-------------CTTTHHH--H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHHHHHHHHHH--H
Confidence 4679999999999999999999999 99999994 333321 2224577899999997 6666 443110 0
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 500 (1224)
+.+........+++.++. | | |||||++|||||+.+|++||||||||+ +...+.+.|.++.
T Consensus 88 ~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~ 147 (208)
T 3b85_A 88 DALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLG 147 (208)
T ss_dssp HHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBC
T ss_pred HHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhc
Confidence 000000001112223222 2 1 999999999999999999999999999 7888888887775
Q ss_pred CCCeEEEEeCCcchhhccCEEEEEeCce
Q 047171 501 QGRTMIIIAHRLSTIRKADLIGVLQSGR 528 (1224)
Q Consensus 501 ~~~t~i~i~H~l~~~~~ad~i~vl~~G~ 528 (1224)
+|+|+| |||+++.+.. +...++|.
T Consensus 148 ~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 148 FGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp TTCEEE-EEEC---------------CC
T ss_pred CCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 588999 9999986653 44455663
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-25 Score=227.97 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVV 424 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~ 424 (1224)
.++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+ ++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhhc-------
Confidence 589999999999999999999985 567776654433224567899999987 223333 11100
Q ss_pred HHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 047171 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA-----LIRDPKILLLDE--ATSALDAESERIVQEALD 497 (1224)
Q Consensus 425 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARa-----l~~~~~ililDE--~ts~lD~~~~~~i~~~l~ 497 (1224)
.+ .+..+++++.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0135677888999999999999996 999999999999 999999999999998886
Q ss_pred HHcCCCeEEEEeC---Ccchhhc-cCEEEEEeCceEEe
Q 047171 498 QASQGRTMIIIAH---RLSTIRK-ADLIGVLQSGRVIE 531 (1224)
Q Consensus 498 ~~~~~~t~i~i~H---~l~~~~~-ad~i~vl~~G~i~~ 531 (1224)
+ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 4677999996 6677765 776 5566665
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-25 Score=255.80 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=117.7
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V 1059 (1224)
|++++| | .++++++||++++|+.++|+||||||||||+++|.|+++|++|.|.++|.+ .+....+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 555555 5 238999999999999999999999999999999999999999999999975 33333355666665
Q ss_pred ecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 047171 1060 SQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILL 1139 (1224)
Q Consensus 1060 ~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILl 1139 (1224)
+| |||+||++|||||.++|++||
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 41 899999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCC-eEEEEccCchhhhhcCEEEEEeCCEE
Q 047171 1140 LDEATSALDSASENLVQEALEKMMVGR-TCVVVAHRLSTIQKADNIVVIKNGKV 1192 (1224)
Q Consensus 1140 LDEaTSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrl~ti~~aD~I~vl~~G~I 1192 (1224)
|||||+. .+++.|+++..|+ |+|+++|+++....||||++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999982 2456666666665 79999999998888999999998853
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=230.09 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=76.9
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCE
Q 047171 448 GQFGVQLSGGQKQRIAIARALI------RDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADL 520 (1224)
Q Consensus 448 ~~~g~~LSgGq~qriaiARal~------~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~ 520 (1224)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4567789999999999999999 7999999999999999999999999998764 58999999999999878999
Q ss_pred EEEEeCceEEe
Q 047171 521 IGVLQSGRVIE 531 (1224)
Q Consensus 521 i~vl~~G~i~~ 531 (1224)
|++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-24 Score=252.58 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=133.6
Q ss_pred ccceeceeEEEeCCc--------------------EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH
Q 047171 993 QMIFKGLTLKIEAGK--------------------TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge--------------------~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1052 (1224)
..+|+||||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH--HHHHHHHHHH
Q 047171 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG--QKQRIALARA 1130 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG--QrQRlaLARA 1130 (1224)
| .++++|++...+.|+.||+.++.+. +.+.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 2 2789999865578999998776432 33555555554322 22222 2 8999 9999999999
Q ss_pred Hcc----------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc------C----CCeEEEEccCchh--hhh-cCEEE
Q 047171 1131 VLK----------NPMILLLDEATSALDSASENLVQEALEKMM------V----GRTCVVVAHRLST--IQK-ADNIV 1185 (1224)
Q Consensus 1131 ll~----------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~------~----~~TvI~IaHrl~t--i~~-aD~I~ 1185 (1224)
+.+ +|++++|||||++||+.+++.+.+.|++.. . ..++++-||.++. +.. ||+|.
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999 999999999999999999999998888763 1 2456677899886 666 88875
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-24 Score=254.20 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=156.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc---cCCCCC----
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER---NIKSYN---- 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~---- 1048 (1224)
+.++++|+++.|+. +.++|+++ |+|.+||+++|+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 34699999 999999999999999999999999999999999999999998 564432
Q ss_pred -HHHHhcceEEEecC-C-CCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1049 -LRKLRSCIALVSQE-P-TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1049 -~~~lR~~i~~V~Qd-p-~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
...+++.++||+|+ . .....|+.+|+.+.. +.... + + ......+ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~--~---------~~v~~~l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-R--G---------QHVLLIM-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-T--T---------CEEEEEE-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-C--C---------CCHHHHH-HhHHHHHHHH-HHH
Confidence 45688999999995 3 344568899887531 11110 0 0 0000111 2356799999 999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV-----GR-----TCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-----~~-----TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
+|| +++|++ |++||+.+...+.+.++++.+ |+ ||+++||+++ ...||++++|.+|+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988755 43 9999999999 667999999999999999
Q ss_pred cChhHHhh
Q 047171 1196 GTQSSLLS 1203 (1224)
Q Consensus 1196 Gt~~eLl~ 1203 (1224)
|++.++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99988754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-23 Score=213.01 Aligned_cols=149 Identities=16% Similarity=0.216 Sum_probs=104.6
Q ss_pred eEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC--CCcccHHH
Q 047171 332 DVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI--LFSTSIKE 409 (1224)
Q Consensus 332 ~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ 409 (1224)
||||+.+ ++++++|+||||||||||++++.+ |...+ +.+.+| |+++|++. .+.+++.+
T Consensus 1 ~vsl~i~---~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~ 60 (171)
T 4gp7_A 1 SMKLTIP---ELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFD 60 (171)
T ss_dssp CEEEEEE---SSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHH
T ss_pred CccccCC---CCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHH
Confidence 4666653 567999999999999999999653 21112 223333 67888763 23333333
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~ 489 (1224)
++. ..+ ...+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 61 ~~~------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 61 VLH------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HHH------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HHH------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 321 111 112234666555543 45699999999999999999999999999999999944
Q ss_pred ----------------HHHHHHHHHH-cCCCeEEEEeCCcchhhccCEE
Q 047171 490 ----------------RIVQEALDQA-SQGRTMIIIAHRLSTIRKADLI 521 (1224)
Q Consensus 490 ----------------~~i~~~l~~~-~~~~t~i~i~H~l~~~~~ad~i 521 (1224)
+.+.+.++++ .+|.|+|+|||+++.+..++++
T Consensus 120 ~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 120 NRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred cccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 6777776554 3589999999999999887664
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-24 Score=234.06 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=118.9
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH-HHHhcccEEecCCCCCCcc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL-KWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~ 405 (1224)
.-.++||+|..+ ++++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 10 ~~~l~~isl~i~---~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMN---NIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ---------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecC---CCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 346789999874 46799999999999999999999999 6 99999 887754432 2356789999999876643
Q ss_pred -----------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHH-----HHHhc
Q 047171 406 -----------SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI-----ARALI 469 (1224)
Q Consensus 406 -----------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriai-----ARal~ 469 (1224)
++.+| .+|.+ .+++.++++. +....++ .+||||||||++| ||+++
T Consensus 83 ~~~~~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll 143 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFI 143 (218)
T ss_dssp HHHTTCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEE
T ss_pred hhhccchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEE
Confidence 33334 33322 2333333321 1222232 6799999999999 99999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
.+|++++|||||+++|.+++..+++.+....+++| ++| +..+|.|+|+++
T Consensus 144 ~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 144 KPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp ECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred eCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999999999988777777 788 577999988765
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=214.32 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 047171 1116 QLSGGQKQRIALARAVL---------KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVV 1186 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll---------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~v 1186 (1224)
.||||||||++|||+|+ .+|+|||||||||+||+...+.+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 79999999 454 8999999
Q ss_pred EeCCEEEEecChhHH
Q 047171 1187 IKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1187 l~~G~Ive~Gt~~eL 1201 (1224)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999987
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-22 Score=226.02 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=126.8
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHH--hcceEEEecCCC-CCc-
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKL--RSCIALVSQEPT-LFA- 1067 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qdp~-LF~- 1067 (1224)
++++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |.++++++|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999987653 2344 457999999997 664
Q ss_pred ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCC
Q 047171 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATS 1145 (1224)
Q Consensus 1068 gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTS 1145 (1224)
.|++||+.++.....+.. .++.+++. +-.+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~~---lldt~gl~-------~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVV---LCDTSGRL-------HTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSEE---EECCCCCS-------SCCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcch---HHhcCCCC-------cchhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 689999976421100000 00111110 0011112 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEcc---------Cchhhhh-cCEEEEEeCCEEE
Q 047171 1146 ALDSASENLVQEALEKMMVGRTCVVVAH---------RLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1146 aLD~~te~~I~~~l~~~~~~~TvI~IaH---------rl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22322 23789999999 3444433 6899999999653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-22 Score=220.71 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCCC---H
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGAS---M 420 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~---~ 420 (1224)
.+|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 689999999999999999999999999999999988743 2345789999999988765 99999999864221 1
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS 500 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~ 500 (1224)
+.+.+... .++...++ .+||||||||+++|||++. +++||||+++||+...+ .++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 22332222 22322222 3699999999999999886 99999999999998733 233333
Q ss_pred CCCeEEEEeCCcchhh
Q 047171 501 QGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 501 ~~~t~i~i~H~l~~~~ 516 (1224)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999887763
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-22 Score=220.04 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEI 1086 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei 1086 (1224)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++. .||.||+.++..... ++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHH
Confidence 489999999999999999999999999999999988743 345688999999998875 599999998854222 122
Q ss_pred HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC
Q 047171 1087 RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGR 1166 (1224)
Q Consensus 1087 ~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~ 1166 (1224)
++.+......++-..++ ..||||||||+++|||+.. +++|||||++||+... .+.+.+. +.+
T Consensus 80 ~~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~---~~~ 141 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS---KVV 141 (270)
T ss_dssp SHHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---TTS
T ss_pred HHHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---hcC
Confidence 22222222223322222 1499999999999999885 9999999999998763 3334443 338
Q ss_pred eEEEEccCchhhh
Q 047171 1167 TCVVVAHRLSTIQ 1179 (1224)
Q Consensus 1167 TvI~IaHrl~ti~ 1179 (1224)
++|+|.|+.+++.
T Consensus 142 ~vI~Vi~K~D~lt 154 (270)
T 3sop_A 142 NIIPVIAKADTMT 154 (270)
T ss_dssp EEEEEETTGGGSC
T ss_pred cEEEEEeccccCC
Confidence 9999999987663
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-22 Score=230.62 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=131.2
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEE-----------------------EeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLK-----------------------IEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~-----------------------I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|.|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45799999999993 477887775 89999999999999999999999999999
Q ss_pred CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccc-cc
Q 047171 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYD-TY 1109 (1224)
Q Consensus 1032 p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gld-t~ 1109 (1224)
|..|. +++++|+||++++..|++||+.+... ...+.. ....+.+++..+..|.. ..
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~~~~~~~ 173 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKSGSDYAC 173 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHTTCSCEE
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCCCcccCC
Confidence 97663 46999999999998899999975321 111100 01122334444443433 33
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh--hcCEEEEE
Q 047171 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQ--KADNIVVI 1187 (1224)
Q Consensus 1110 vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~--~aD~I~vl 1187 (1224)
+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|+|..+... ..+|.+.+
T Consensus 174 ~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 174 A----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp E----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHH
T ss_pred c----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHH
Confidence 3 4699999999999999999999999999999998632 1233333 3 5688888777642 26666655
Q ss_pred eCCE
Q 047171 1188 KNGK 1191 (1224)
Q Consensus 1188 ~~G~ 1191 (1224)
.+|+
T Consensus 243 rd~~ 246 (312)
T 3aez_A 243 RTTA 246 (312)
T ss_dssp TTTG
T ss_pred Hhcc
Confidence 5543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-23 Score=228.83 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=146.0
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECCccCCCCCHHHHhcceEEEec-----CCCCCc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKSYNLRKLRSCIALVSQ-----EPTLFA 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----dp~LF~ 1067 (1224)
++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999999886543 455788999 666778
Q ss_pred ccHHHHHccCCCCC-------CHHHHHHHHHHHhH-----------------HHHH------------HhcccccccccC
Q 047171 1068 GTIRQNIVYGKEVA-------TEAEIRKAAVLANA-----------------HEFI------------SSTEDGYDTYCG 1111 (1224)
Q Consensus 1068 gTIreNl~~~~~~~-------~deei~~al~~a~l-----------------~~~I------------~~lp~gldt~vg 1111 (1224)
.+++.+|... |+. +.+.++.+++.+.. +..+ ..+++++++.|+
T Consensus 89 ~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 8999998763 443 66666666654421 1111 235678999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCE--EEEeccCCCCCHHH---------HHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1112 ERGVQLSGGQKQRIALARAVLKNPMI--LLLDEATSALDSAS---------ENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1112 e~G~~LSGGQrQRlaLARAll~~p~I--LlLDEaTSaLD~~t---------e~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+++..+|+| ||+++||+++.+|+| +|+||+||++|... +..++++++...+|+|.+.++||++.
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 242 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHCS
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHhC
Confidence 999999999 899999999999999 99999999999873 45789999988999999999999873
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-23 Score=210.09 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCC---CceEEECCccCCCCC---HHHHh-cceE----EEecCCCCCcccHHHHHc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERNIKSYN---LRKLR-SCIA----LVSQEPTLFAGTIRQNIV 1075 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~---~~~lR-~~i~----~V~Qdp~LF~gTIreNl~ 1075 (1224)
++++|||+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5788 899999988 211
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHh-cccccccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 047171 1076 YGKEVATEAEIRKAAVLANAHEFISS-TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138 (1224)
Q Consensus 1076 ~~~~~~~deei~~al~~a~l~~~I~~-lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~IL 1138 (1224)
+ + +++ .+++++++.. +| ||||.++|+ |||||||||+||||++++|+|.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 6799999999 99 999999995 9999999999999999999874
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-22 Score=236.75 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=147.6
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECCccCCCCCHHHHhcceEEEec-----CCCCCc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKSYNLRKLRSCIALVSQ-----EPTLFA 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----dp~LF~ 1067 (1224)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677776 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHHccCCCCC-------CHHHHHHHHHHHhH-----------------HHHH------------HhcccccccccC
Q 047171 1068 GTIRQNIVYGKEVA-------TEAEIRKAAVLANA-----------------HEFI------------SSTEDGYDTYCG 1111 (1224)
Q Consensus 1068 gTIreNl~~~~~~~-------~deei~~al~~a~l-----------------~~~I------------~~lp~gldt~vg 1111 (1224)
++|++||.. +|+. +++.++.+++.++. +..+ ..++.++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999987 4655 67778777777653 1111 125778999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCE--EEEeccCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1112 ERGVQLSGGQKQRIALARAVLKNPMI--LLLDEATSALDSA----S-----ENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1112 e~G~~LSGGQrQRlaLARAll~~p~I--LlLDEaTSaLD~~----t-----e~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+++..+|+| ||+++||+++.+|+| +|+||+||++|.. + +..++++++...+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 998889999 899999999999999 9999999999965 3 45688899888899999999999984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-21 Score=222.98 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=126.9
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHH--hcceEEEecCCC-CC-cc
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKL--RSCIALVSQEPT-LF-AG 1068 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qdp~-LF-~g 1068 (1224)
+++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |.++++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999986642 2333 568999999987 55 46
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCCC
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATSA 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSa 1146 (1224)
|+++|+.++.....+.. .+..+++. +-.+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~~---lldt~Gl~-------~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVV---LCDTSGRL-------HTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSEE---EEECCCCS-------SCCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHHH---HHHhcCCC-------hhhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 89999976421100100 00111110 0011111 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEcc---------Cchhhhh-cCEEEEEeCCEE
Q 047171 1147 LDSASENLVQEALEKMMVGRTCVVVAH---------RLSTIQK-ADNIVVIKNGKV 1192 (1224)
Q Consensus 1147 LD~~te~~I~~~l~~~~~~~TvI~IaH---------rl~ti~~-aD~I~vl~~G~I 1192 (1224)
+|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22322 23789999999 3444433 689999999964
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-22 Score=212.48 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=110.0
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIR 1071 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIr 1071 (1224)
.++++| .+|++||++||+||||||||||+++|.|+++ .|.+++.....-+....|+.++|++|++.+|. .|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 358888 7999999999999999999999999999986 34555422111111234678999999998775 4666
Q ss_pred HHHccCC------C--CCCHHHHHHHH----------HHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1072 QNIVYGK------E--VATEAEIRKAA----------VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1072 eNl~~~~------~--~~~deei~~al----------~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
+|+.+.. . ..+.+++.+.+ +..++.++....| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 6663210 0 11233333322 2333333332222 2344 8999
Q ss_pred CCCEEEEeccCCCC----CHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe
Q 047171 1134 NPMILLLDEATSAL----DSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIK 1188 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaL----D~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~ 1188 (1224)
+|++++|||||+++ |+.+.+.+++.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778889999888774 37899999999999865 99999984
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-21 Score=217.68 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=134.9
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCccccccc-ccccccEE---------
Q 047171 261 GEKGGLVFVAGICTILGGVGIMSALP-NLSFISQATTAATRIFEMIDRVPVINSEDEIGKTL-AYLRGEIE--------- 329 (1224)
Q Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~--------- 329 (1224)
.++.+.+.+++.++.....+ .+.. ....+..+..+.+|+.++++.++. .... ..... ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~-~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDET-ISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTC-CEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCC-ceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888888887766554333 1111 122233334456788887753321 1110 00000 01123455
Q ss_pred EEeEEEECCC--------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 330 FKDVDFSYPT--------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 330 ~~~v~f~y~~--------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
|+||+| |.. -++++.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 151 ~~~v~f-y~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~---- 223 (330)
T 2pt7_A 151 YNLLDN-KEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF---- 223 (330)
T ss_dssp TTTSTT-HHHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC----
T ss_pred cCchhh-HHHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe----
Confidence 666666 510 02456899999999999999999999999999999999865 222222445555543
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 402 LFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 402 lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
| |||+||++|||||..+|+++||||||
T Consensus 224 ----------------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 224 ----------------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp ----------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred ----------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 0 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC-eEEEEeCCcchhhccCEEEEEeCceE
Q 047171 482 SALDAESERIVQEALDQASQGR-TMIIIAHRLSTIRKADLIGVLQSGRV 529 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~~~~~~-t~i~i~H~l~~~~~ad~i~vl~~G~i 529 (1224)
+. .+.+.++.+..|+ |+|+++|+++....||||++|++|+.
T Consensus 251 ~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 251 SS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred hH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 82 2455666666665 79999999998788999999998854
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-21 Score=225.45 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=114.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVV 424 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~ 424 (1224)
.+||+||||||||||+|+|+|+++|++|+|.++|.++. | .++++|++...+.|+.||+.++.+.. .+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~ 138 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPD 138 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C--CCEEEECSSCTTEEEEECCCGGGSSC---CHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e--eEEeccccccCCeeehHhhcccchHH---HHH
Confidence 89999999999999999999999999999999997653 1 28899997644679999988775422 222
Q ss_pred HHHHHhcHHHHHHhccccccccccCCCCCCChH--HHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHH
Q 047171 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG--QKQRIAIARALIR----------DPKILLLDEATSALDAESERIV 492 (1224)
Q Consensus 425 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--q~qriaiARal~~----------~~~ililDE~ts~lD~~~~~~i 492 (1224)
+.++..++. .++..+ . |||| ||||++|||||.+ +|++++|||||++||+.++..+
T Consensus 139 ~~L~~~~L~--------~~~~~~----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 139 TYLEKMKFY--------EYDFFI----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp HHHHHTTGG--------GCSEEE----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred HHHHHcCCC--------ccCCeE----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence 333332211 112222 2 9999 9999999999999 9999999999999999988888
Q ss_pred HHHHHHHc------C----CCeEEEEeCCcch--hhc-cCEE
Q 047171 493 QEALDQAS------Q----GRTMIIIAHRLST--IRK-ADLI 521 (1224)
Q Consensus 493 ~~~l~~~~------~----~~t~i~i~H~l~~--~~~-ad~i 521 (1224)
.+.+++.. . .+++++.||.++. ++. +|+|
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 88777652 1 2567788998886 655 7766
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-21 Score=227.91 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=145.0
Q ss_pred ccEEEEeEEEECCC-C---------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE---ecCCCC-----HH
Q 047171 326 GEIEFKDVDFSYPT-R---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH---KIKKLQ-----LK 387 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~-~---------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~-----~~ 387 (1224)
..++++||++.|+. . .++++++|+||||||||||+++|+|+++|+.|.|.++|+ +++++. ..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred CceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence 45888999999963 2 357799999999999999999999999999999999998 554432 34
Q ss_pred HHhcccEEecCC-CCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHH
Q 047171 388 WLRSQMGLVNQE-PILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465 (1224)
Q Consensus 388 ~~r~~i~~v~Q~-~~lf-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiA 465 (1224)
.+++.++||+|+ ..++ ..|+.+|+.+.. +.... + ...... +-+...+||||| |||+||
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~-----------~~~v~~-~ld~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-R-----------GQHVLL-IMDSLTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-T-----------TCEEEE-EEECHHHHHHHH-HHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-C-----------CCCHHH-HHHhHHHHHHHH-HHHHHH
Confidence 578899999995 3333 558999987631 11110 0 000111 113367899999 999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEeCCcchhhccCEEEEEeCceEEeecCh
Q 047171 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQ-----GR-----TMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535 (1224)
Q Consensus 466 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~ 535 (1224)
+.+|++ |++||+.+...+.+.++++.+ |+ |++++||+++ ...||++++|.+|+|+.+|++
T Consensus 270 ---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~ 339 (438)
T 2dpy_A 270 ---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRL 339 (438)
T ss_dssp ---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHH
T ss_pred ---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCH
Confidence 899998 999999999999999988654 54 9999999999 666999999999999999998
Q ss_pred HHHHh
Q 047171 536 DVLMQ 540 (1224)
Q Consensus 536 ~~l~~ 540 (1224)
+++..
T Consensus 340 ~~~~~ 344 (438)
T 2dpy_A 340 AEAGH 344 (438)
T ss_dssp HHTTC
T ss_pred HHccC
Confidence 88653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-21 Score=204.59 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=123.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHH
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAE 1085 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~dee 1085 (1224)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.++ ..+++++++++|+. +++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 99999988654 35789999999996 443 334432110000
Q ss_pred HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH-HHHH---HHccCCCEEEEec--cCCCCCHHHHHHHHHHH
Q 047171 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI-ALAR---AVLKNPMILLLDE--ATSALDSASENLVQEAL 1159 (1224)
Q Consensus 1086 i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl-aLAR---All~~p~ILlLDE--aTSaLD~~te~~I~~~l 1159 (1224)
+...+..+|+.+..+|+|||+++ +++| |++++|+|||||| ||..+|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11133478888999999999998 5566 7899999999999 89889999888888877
Q ss_pred HHhcCCCeEE----EEccCchhhhhcCEEEEEeCCEEEEec
Q 047171 1160 EKMMVGRTCV----VVAHRLSTIQKADNIVVIKNGKVVEQG 1196 (1224)
Q Consensus 1160 ~~~~~~~TvI----~IaHrl~ti~~aD~I~vl~~G~Ive~G 1196 (1224)
+. .+|+| +|+||.+ ...+|+|..+++|+|.+..
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 63 34555 3449886 5568888888999998754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-19 Score=203.86 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEE
Q 047171 453 QLSGGQKQRIAIARALI---------RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523 (1224)
Q Consensus 453 ~LSgGq~qriaiARal~---------~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~v 523 (1224)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998764 79999999 454 8999999
Q ss_pred EeCceEEeecChHHH
Q 047171 524 LQSGRVIESGSHDVL 538 (1224)
Q Consensus 524 l~~G~i~~~g~~~~l 538 (1224)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999876
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-21 Score=202.36 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=87.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCEecCCCC---HHHHh-cccE----EecCCCCCCcccHHHHHh
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPV---KGNILLDGHKIKKLQ---LKWLR-SQMG----LVNQEPILFSTSIKENIL 412 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~~ni~ 412 (1224)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 378999999999999999999999998 899999999988776 66777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-ccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 413 IGKPGASMETVVKAAQAANVHDFIMK-LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 413 ~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+ . ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 121 6789999999 99 999999995 9999999999999999999873
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-20 Score=215.61 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=147.9
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC-------CC
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS-------YN 1048 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------~~ 1048 (1224)
..++.+++++.|+. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35888999999963 34699999 9999999999999999999999999999999999999999975221 12
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccc-cCCCCCCCChHHHHHHHH
Q 047171 1049 LRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY-CGERGVQLSGGQKQRIAL 1127 (1224)
Q Consensus 1049 ~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~-vge~G~~LSGGQrQRlaL 1127 (1224)
...+++.+.+++|.+. + ..+.+..+.....+.++... .|.+.. +-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2335556667766431 1 12334444444444554332 122211 113456799999 99999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEccCchhhhhcCEEEEEeCCEEEEecChh
Q 047171 1128 ARAVLKNPMILLLDEATSALDSASENLVQEALEKMM---VGR-----TCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQS 1199 (1224)
Q Consensus 1128 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~---~~~-----TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~ 1199 (1224)
| +.+|++ |+++|+.....+.+.+++.. .|. ||+++||+++ -.-||++++|.+|+|+..|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998875 266 8999999999 4559999999999999999887
Q ss_pred HHh
Q 047171 1200 SLL 1202 (1224)
Q Consensus 1200 eLl 1202 (1224)
++.
T Consensus 252 ~~~ 254 (347)
T 2obl_A 252 EEN 254 (347)
T ss_dssp TTT
T ss_pred HcC
Confidence 764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-22 Score=212.52 Aligned_cols=169 Identities=14% Similarity=0.224 Sum_probs=131.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccC-------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYD-------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
+++|++++|+||||||||||+++|.|+++ |..|+ +||+++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78898 699999999999999876 7999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH-HHccCCCEEEEeccCCCCC
Q 047171 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR-AVLKNPMILLLDEATSALD 1148 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR-All~~p~ILlLDEaTSaLD 1148 (1224)
+++|+ +|. ++++++++++.....-+ .-.|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 663 67888888865321111 1245677765431 12 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 047171 1149 SASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1149 ~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
.++++.|++.|.+..++ +.++| ++ ..||+|+|+++ -..+.++|.+
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 99999999999877554 45678 55 78999999875 2345666643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-20 Score=211.80 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHH--hcccEEecCCCC-CCcc-cHHHHHhc
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWL--RSQMGLVNQEPI-LFST-SIKENILI 413 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~-ti~~ni~~ 413 (1224)
++++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.+|+||+|++. +++. |++||+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999876542 1223 457999999997 7654 99999976
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERI 491 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~~~ 491 (1224)
+.....+. ..++.+ |..........+|| |||++||||+..+|+ +|+|| ||+++|+.+..
T Consensus 179 ~~~~~~d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~- 239 (302)
T 3b9q_A 179 GKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 239 (302)
T ss_dssp HHHTTCSE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred HHHcCCcc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-
Confidence 42100000 011111 22222223334588 999999999999999 99999 99999998653
Q ss_pred HHHHHHHHcCCCeEEEEeC---------Ccchhhc-cCEEEEEeCceEE
Q 047171 492 VQEALDQASQGRTMIIIAH---------RLSTIRK-ADLIGVLQSGRVI 530 (1224)
Q Consensus 492 i~~~l~~~~~~~t~i~i~H---------~l~~~~~-ad~i~vl~~G~i~ 530 (1224)
+.+.+ ..|.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 240 --~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 240 --REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp --HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred --HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 12221 24889999999 3334433 7799999999653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-20 Score=214.49 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=120.6
Q ss_pred cccccEEEEeEEEECCC-------------------------------CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 323 YLRGEIEFKDVDFSYPT-------------------------------RPDTPTIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 323 ~~~~~i~~~~v~f~y~~-------------------------------~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
...+.|+++||++.|.. .+++.++||+||||||||||+++|.|+++|+.
T Consensus 39 ~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 44567999999998831 24566999999999999999999999999986
Q ss_pred cEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhccccccccccCC
Q 047171 372 GNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQF 450 (1224)
Q Consensus 372 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 450 (1224)
|. +++++|+|++++++.|++||+.+... +... +.....+.++++.++.|.. ...
T Consensus 119 G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~-----~~d~~~~~~~L~~l~~~~~---~~~ 173 (312)
T 3aez_A 119 HH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPE-----SYNRRALMRFVTSVKSGSD---YAC 173 (312)
T ss_dssp TC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGG-----GBCHHHHHHHHHHHHTTCS---CEE
T ss_pred CC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHhCCCcc---cCC
Confidence 63 36999999999998899999976321 1111 0111223455666654543 123
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhh--ccCEEEEEeCc
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIR--KADLIGVLQSG 527 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~--~ad~i~vl~~G 527 (1224)
...|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|+|+.+... ..+|.+.+.+|
T Consensus 174 ~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999998621 0111111 2 4466666665532 25555444443
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=211.94 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCC-ChHHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 047171 1115 VQL-SGGQKQRIALARAVLKNP--MILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNG 1190 (1224)
Q Consensus 1115 ~~L-SGGQrQRlaLARAll~~p--~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G 1190 (1224)
.+| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999887789999999999998889999999554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=198.34 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=123.5
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
++|+++++.+++|+.++|+||||||||||++.|++...|.+| .|.+.+.+. +...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 776655433 566677666666555432 2233
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH-HHHHHHHHHHccCCCEEEEeccCC---C--
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ-KQRIALARAVLKNPMILLLDEATS---A-- 1146 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ-rQRlaLARAll~~p~ILlLDEaTS---a-- 1146 (1224)
|+..+. .++++..+++ .+++...+-+ +.+...++|.+| +||+. |+|+..+|++|||||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443221 1223333222 1222222222 223335689999 67777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHhc--CCCeEEEEccCc--h--------------------hhh-hcCEEEEEeCCEE
Q 047171 1147 -LDS-ASENLVQEALEKMM--VGRTCVVVAHRL--S--------------------TIQ-KADNIVVIKNGKV 1192 (1224)
Q Consensus 1147 -LD~-~te~~I~~~l~~~~--~~~TvI~IaHrl--~--------------------ti~-~aD~I~vl~~G~I 1192 (1224)
+|. .....+.+.|+++. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 55567778887764 289999999995 4 554 4999999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-20 Score=225.35 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=122.2
Q ss_pred CccceeceeE-EEeCCcEEEEEcCCCCChHHHHHH--HhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 047171 992 DQMIFKGLTL-KIEAGKTVALVGQSGSGKSTIIGL--IERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068 (1224)
Q Consensus 992 ~~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~l--L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g 1068 (1224)
+.++|+++|| .|++||.++|+||||||||||++. +.|+++|.+|.|+++|.+. ..+....++++++++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3569999999 999999999999999999999999 6899999999999999883 223445677899999997521
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCC--
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSA-- 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSa-- 1146 (1224)
+|+.+.... .+++.+++++..++.++....+. .|||| +|++|+|||||+.
T Consensus 101 ---~~l~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDAS-PDPEGQEVVGGFDLSALIERINY-----------AIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECC-CCSSCCSCCSSHHHHHHHHHHHH-----------HHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecC-cccchhhhhcccCHHHHHHHHHH-----------HHHHc-------------CCCEEEECCHHHHHH
Confidence 122111100 00011112223333333332221 25666 4779999999984
Q ss_pred ---CCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh---------hh-cCEEEEEeCC
Q 047171 1147 ---LDSASENLVQEALEKMM-VGRTCVVVAHRLSTI---------QK-ADNIVVIKNG 1190 (1224)
Q Consensus 1147 ---LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti---------~~-aD~I~vl~~G 1190 (1224)
+|+...+.+.+.++.+. .|+|+|+|+|+++.+ .. ||+|++|++|
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 58899999999998764 489999999999984 45 9999999983
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-20 Score=209.06 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=120.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHH--hcccEEecCCCC-CCc-ccHHHHHhc
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWL--RSQMGLVNQEPI-LFS-TSIKENILI 413 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ti~~ni~~ 413 (1224)
++.+++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.+|+|++|++. +++ .|++||+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 46699999999999999999999999999999999999876542 1222 467999999987 665 499999976
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESERI 491 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~~~ 491 (1224)
+.....+. ..++.+ |..........+|| |||++||||+..+|+ +|+|| ||+++|+.++..
T Consensus 236 ~~~~~~d~------------~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~ 297 (359)
T 2og2_A 236 GKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR 297 (359)
T ss_dssp HHHTTCSE------------EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH
T ss_pred HHhCCCHH------------HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH
Confidence 42100000 011111 22222222334588 999999999999999 99999 999999986531
Q ss_pred HHHHHHHHcCCCeEEEEeC---------Ccchhhc-cCEEEEEeCceE
Q 047171 492 VQEALDQASQGRTMIIIAH---------RLSTIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 492 i~~~l~~~~~~~t~i~i~H---------~l~~~~~-ad~i~vl~~G~i 529 (1224)
.+.+ ..|.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 298 ---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 298 ---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp ---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 1211 24889999999 2344433 789999999964
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=190.31 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=67.6
Q ss_pred CCCCChHHHH------HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 047171 1114 GVQLSGGQKQ------RIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQKADNIVV 1186 (1224)
Q Consensus 1114 G~~LSGGQrQ------RlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~aD~I~v 1186 (1224)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4579999999 6788899999999999999999999999999999998864 46899999999877777999999
Q ss_pred Ee
Q 047171 1187 IK 1188 (1224)
Q Consensus 1187 l~ 1188 (1224)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-18 Score=221.66 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=123.4
Q ss_pred ccEEEEE-----EEEECCCCCCccceeceeEEEeC-------CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc
Q 047171 976 GFIELKN-----VFFSYPSRPDQMIFKGLTLKIEA-------GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043 (1224)
Q Consensus 976 g~I~~~~-----vsf~Y~~~~~~~vL~~isl~I~~-------Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1043 (1224)
+.|+++| |++.|+. +..|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999942 34699999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1044 IKSYNLRKLRSCIA-LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1044 i~~~~~~~lR~~i~-~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
+.++| ||||++. ..|+.|||... - ++.+.+. .+-+++|+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-i--------------g~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-L--------------GASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-C--------------C--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-c--------------CCHHHHh-----------hchhhhHHHHH
Confidence 34566 9999983 55777776321 0 1111111 11235777776
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHH-HHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEE--Eec
Q 047171 1123 QRIALARAVLKNPMILLLDEATSALDSAS-ENLVQEALEKMM-V-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVV--EQG 1196 (1224)
Q Consensus 1123 QRlaLARAll~~p~ILlLDEaTSaLD~~t-e~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv--e~G 1196 (1224)
+ +++||+++.+|+++||||||+++|+.. ...+++.++.+. + ++|+|++||.++.+.. ||++.|+ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999886 566778887765 3 8999999999999876 8998886 58887 556
Q ss_pred ChhH
Q 047171 1197 TQSS 1200 (1224)
Q Consensus 1197 t~~e 1200 (1224)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-20 Score=194.24 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETV 423 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~ 423 (1224)
++++|+||||||||||+++|+|+++ ++| |.++|.++.+++ .+++++||++|+. .++ ++|+.- .....+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~--~~~~~~-- 69 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSR--VGLEPP-- 69 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEE--CCCCCC--
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhc--ccccCC--
Confidence 4789999999999999999999999 999 999999886543 4688899999986 232 122211 000000
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI-AIAR---ALIRDPKILLLDE--ATSALDAESERIVQEALD 497 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri-aiAR---al~~~~~ililDE--~ts~lD~~~~~~i~~~l~ 497 (1224)
+...+..+|+.+..+|||||+++ ++++ |+..+|+|||||| ||..+|....+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 00123478899999999999999 5566 7899999999999 898899987777776665
Q ss_pred HHcCCCeEEE--Ee--CCcchhhccCEEEEEeCceEEee
Q 047171 498 QASQGRTMII--IA--HRLSTIRKADLIGVLQSGRVIES 532 (1224)
Q Consensus 498 ~~~~~~t~i~--i~--H~l~~~~~ad~i~vl~~G~i~~~ 532 (1224)
..+|+|+ ++ ||.+ ....|+|..+++|+|++-
T Consensus 134 ---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 ---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp ---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred ---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 2456664 44 9886 455788888889999864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-19 Score=199.38 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=107.7
Q ss_pred CccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 047171 992 DQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 992 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
+.++|+|+||++++|+.+||+|||||||||++++|.+++ |.+.+| ..++.+++++|++....-|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999977 666555 367889999999754456899
Q ss_pred HHHccCCCC--------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEecc
Q 047171 1072 QNIVYGKEV--------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143 (1224)
Q Consensus 1072 eNl~~~~~~--------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEa 1143 (1224)
+|+.+.... .+.+++.+. +..+..+.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 988643211 112222222 222223444444 4699999999988 688999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1144 TSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI-QK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1144 TSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti-~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
....|.. +.+. .+.|++++||....+ +. ++.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8777753 2222 378999999974433 43 3334 6675 6777764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-17 Score=186.11 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=68.7
Q ss_pred CCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhccCEE
Q 047171 449 QFGVQLSGGQKQ------RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRKADLI 521 (1224)
Q Consensus 449 ~~g~~LSgGq~q------riaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~ad~i 521 (1224)
.....||||||| |+++|||++.+|++|||||||++||+.....+.+.|.++ .+++|+|+|||+.+....||+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 456789999999 678889999999999999999999999999999999875 4578999999998766779999
Q ss_pred EEEe
Q 047171 522 GVLQ 525 (1224)
Q Consensus 522 ~vl~ 525 (1224)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-20 Score=196.83 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhc-----C
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILI-----G 414 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~-----g 414 (1224)
+++++++|+||||||||||+++|+|+++. |.+++.....-+....++.++|++|++.+|.. |+.+|+.. +
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHG 93 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcC
Confidence 45779999999999999999999999863 44443221111112235789999999987764 67776632 1
Q ss_pred C-C--CCCHHHHHHHHHH----------hcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 415 K-P--GASMETVVKAAQA----------ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 415 ~-~--~~~~~~~~~~~~~----------~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
+ . ..+.+++.+.++. .++.++. ......|| ||+.+|++++|||||
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIK-----------KTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHH-----------HHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH-----------HhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 0 0 1122233322221 1222221 12223445 899999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEe
Q 047171 482 SAL----DAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQ 525 (1224)
Q Consensus 482 s~l----D~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~ 525 (1224)
+++ |+...+.+.+.++++. .|.|+|+|||+++.+.. ||+|++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 6778888998888764 48999999999999876 99999984
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-20 Score=218.25 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=136.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEECCEecCCCCHHHHhcccEEecC-----CCCCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPV-KGNILLDGHKIKKLQLKWLRSQMGLVNQ-----EPILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~~ti~~ni~~g~ 415 (1224)
++..++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|+.++++|++. .
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~-~ 209 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFADALRAALRE-D 209 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTS-C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHHHHHHHhhh-C
Confidence 34589999999999999999999999998 899987776653 2 35778999999 888999999999997 4
Q ss_pred CCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhccccccccccCCCCCCChHHH
Q 047171 416 PGA-------SMETVVKAAQAANV-----------------HDFI------------MKLNDGYETKVGQFGVQLSGGQK 459 (1224)
Q Consensus 416 ~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~~~~~g~~LSgGq~ 459 (1224)
|+. +.+.+..+++.++. +..+ ..++.++++.+++++..+|||
T Consensus 210 pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G-- 287 (372)
T 2ewv_A 210 PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG-- 287 (372)
T ss_dssp CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSS--
T ss_pred cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCC--
Confidence 554 66666666665542 1211 224678999999999999999
Q ss_pred HHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEeCCcch
Q 047171 460 QRIAIARALIRDPKI--LLLDEATSALDAE----S-----ERIVQEALDQASQGRTMIIIAHRLST 514 (1224)
Q Consensus 460 qriaiARal~~~~~i--lilDE~ts~lD~~----~-----~~~i~~~l~~~~~~~t~i~i~H~l~~ 514 (1224)
||++|||+++.+|+| +|+||+|++||.. + +...+++++...+|+|.+.++||++.
T Consensus 288 ~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 288 GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 899999999999999 9999999999965 3 34678888888899999999999984
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-20 Score=212.78 Aligned_cols=176 Identities=17% Similarity=0.130 Sum_probs=111.1
Q ss_pred ceeceeEEEeC--CcEEEEEcCCCCChHHHHHHHhcccCCCC----ceEEE----CCccCCCCCHHHHhcceEEEecCCC
Q 047171 995 IFKGLTLKIEA--GKTVALVGQSGSGKSTIIGLIERFYDPQS----GSVMV----DERNIKSYNLRKLRSCIALVSQEPT 1064 (1224)
Q Consensus 995 vL~~isl~I~~--Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~----G~I~i----dG~di~~~~~~~lR~~i~~V~Qdp~ 1064 (1224)
+.+.|+++|++ |+++||+|+||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred CCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc-cCCCEEEEec-
Q 047171 1065 LFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL-KNPMILLLDE- 1142 (1224)
Q Consensus 1065 LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll-~~p~ILlLDE- 1142 (1224)
+|++|+++||.++.....+...+.. |+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCI----------------------------QYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHH----------------------------HHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHHHH----------------------------HHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 9999999999987543323333222 233344444444443 2555555555
Q ss_pred --cC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 047171 1143 --AT------SALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1143 --aT------SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
|+ +++|......+.+.|.+..+ +.|+|+++|--..-+.+|++.++++ +++.|+.+||.
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 32 34555555555555544332 4455555543222222444444432 34455555553
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-20 Score=207.52 Aligned_cols=165 Identities=22% Similarity=0.268 Sum_probs=133.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEECCEecCCCCHHHHhcccEEecC-----CCCCCcccHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPV-KGNILLDGHKIKKLQLKWLRSQMGLVNQ-----EPILFSTSIKENILIGK 415 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~~ti~~ni~~g~ 415 (1224)
++..++|+|||||||||++++|+|+++|+ +|+|.++|.++..+. +..+++++| ++..|..+++.+++. +
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~~~la~aL~~-~ 98 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFADALRAALRE-D 98 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHHHHHHHHHHH-C
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHHHHHHHHHhh-C
Confidence 46699999999999999999999999998 999999998875442 345678888 666677899999887 3
Q ss_pred CCC-------CHHHHHHHHHHhc-----------------HHHHH------------HhccccccccccCCCCCCChHHH
Q 047171 416 PGA-------SMETVVKAAQAAN-----------------VHDFI------------MKLNDGYETKVGQFGVQLSGGQK 459 (1224)
Q Consensus 416 ~~~-------~~~~~~~~~~~~~-----------------~~~~i------------~~l~~g~~t~~~~~g~~LSgGq~ 459 (1224)
|+. +.+.+..+++.+. ++..+ ..+++++++.+++++..+|||
T Consensus 99 p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~~~~G-- 176 (261)
T 2eyu_A 99 PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG-- 176 (261)
T ss_dssp CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEEECCSSS--
T ss_pred CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEeEecCCC--
Confidence 433 5555554444332 11111 235678999999999999999
Q ss_pred HHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHcCCCeEEEEeCCcc
Q 047171 460 QRIAIARALIRDPKI--LLLDEATSALDAES---------ERIVQEALDQASQGRTMIIIAHRLS 513 (1224)
Q Consensus 460 qriaiARal~~~~~i--lilDE~ts~lD~~~---------~~~i~~~l~~~~~~~t~i~i~H~l~ 513 (1224)
||+++||+++.+|+| +|+||+|+++|... +..++++++...+|+|.+.++||++
T Consensus 177 ~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 177 GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999999999 99999999999873 4568888888899999999999986
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=163.04 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=75.4
Q ss_pred cccccc-----cCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 047171 442 GYETKV-----GQFGVQLSGGQKQRIAIA------RALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIA 509 (1224)
Q Consensus 442 g~~t~~-----~~~g~~LSgGq~qriaiA------Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~ 509 (1224)
++++.+ ...+.+||||||||++|| ||++.+|+++||||||++||+++...+.+.+.++. +|+|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 565554 456789999999999876 99999999999999999999999999999998864 589999999
Q ss_pred CCcchhhccCEEEEE--eCceE
Q 047171 510 HRLSTIRKADLIGVL--QSGRV 529 (1224)
Q Consensus 510 H~l~~~~~ad~i~vl--~~G~i 529 (1224)
|+.+....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999655669999999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-19 Score=194.24 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=108.4
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc---cHHHHHccC--
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG---TIRQNIVYG-- 1077 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g---TIreNl~~~-- 1077 (1224)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+.+++. |+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 59999999998843 677776543
Q ss_pred CC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH----HHHHHHHHHHccCCCEEEEeccCCC------
Q 047171 1078 KE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ----KQRIALARAVLKNPMILLLDEATSA------ 1146 (1224)
Q Consensus 1078 ~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ----rQRlaLARAll~~p~ILlLDEaTSa------ 1146 (1224)
.+ ..+.+.+.++++..++.+.+ ...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 22 22445666666555443322 12244577775 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHhc--CCCeEEEEccCc
Q 047171 1147 -LDSASENLVQEALEKMM--VGRTCVVVAHRL 1175 (1224)
Q Consensus 1147 -LD~~te~~I~~~l~~~~--~~~TvI~IaHrl 1175 (1224)
||+.++..+++.+.+.. +|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987653 588999999984
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-18 Score=199.56 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=119.8
Q ss_pred ceece-eEEEeCCcEEEEEcCCCCChHHHHHHHhccc--CCCC----ce-EEECCccCCCCCHHHHhcceEEEecCCCCC
Q 047171 995 IFKGL-TLKIEAGKTVALVGQSGSGKSTIIGLIERFY--DPQS----GS-VMVDERNIKSYNLRKLRSCIALVSQEPTLF 1066 (1224)
Q Consensus 995 vL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~~~~~~lR~~i~~V~Qdp~LF 1066 (1224)
.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6666 67 999998752 256788999999998
Q ss_pred cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc-------cCCCEEE
Q 047171 1067 AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL-------KNPMILL 1139 (1224)
Q Consensus 1067 ~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll-------~~p~ILl 1139 (1224)
..++.+||.+.... + |++|+|++.++++++ .+|++||
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999999876421 1 345666666666666 6899999
Q ss_pred EeccCCCCCHHH------------HHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1140 LDEATSALDSAS------------ENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1140 LDEaTSaLD~~t------------e~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+||||+.+|++. -..+.+.|.++. .++|||+++|....... ++.+.+...|++++++++..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 133334444433 38899999998876543 4556778889999998887775
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=162.55 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=74.8
Q ss_pred cccccc-----CCCCCCCChHHHHHHHHH------HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 047171 1105 GYDTYC-----GERGVQLSGGQKQRIALA------RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVA 1172 (1224)
Q Consensus 1105 gldt~v-----ge~G~~LSGGQrQRlaLA------RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 1172 (1224)
+|+..+ .....+||||||||++|| ||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566654 244578999999999876 99999999999999999999999999999999875 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCE
Q 047171 1173 HRLSTIQKADNIVVI--KNGK 1191 (1224)
Q Consensus 1173 Hrl~ti~~aD~I~vl--~~G~ 1191 (1224)
|+++....||+|++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999666669999999 4564
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-20 Score=197.64 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=122.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD-------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
+..++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|++++|++++.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFSG 78 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeecC
Confidence 56899999999999999999999986 78897 589998888999998876 7999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCHHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR-ALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR-al~~~~~ililDE~ts~lD~~~ 488 (1224)
|+ +|. +.+++.++++...+.- ....|+|+++.... ++ .|| +++.+|++++|||+|+++|.++
T Consensus 79 n~-~g~---~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 79 NL-YGT---SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp EE-EEE---EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred cc-CCC---CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 98 774 4667777776432110 11235566665432 12 577 8999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 489 ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 489 ~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
++.|++.|....++ +.++| ++ ..+|+|+|+++
T Consensus 142 e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 99999999876544 35677 44 77999998875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-17 Score=206.60 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=114.2
Q ss_pred cccEEEEEEEEECCCC--CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-CCCceEEECCccCCCCCHHH
Q 047171 975 KGFIELKNVFFSYPSR--PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-PQSGSVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~~~~~~ 1051 (1224)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+|||||||||+++++.|+.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 346899888 56531 235799999999 99999999999999999999999874 6778752 1 1
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1052 LRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1052 lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
.+.++++++| +|. .++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2456888887 454 366666532 258999999999999
Q ss_pred H--ccCCCEEEEecc---CCCCCHHHH-HHHHHHHHHhcCCCeEEEEccCchhhhhc
Q 047171 1131 V--LKNPMILLLDEA---TSALDSASE-NLVQEALEKMMVGRTCVVVAHRLSTIQKA 1181 (1224)
Q Consensus 1131 l--l~~p~ILlLDEa---TSaLD~~te-~~I~~~l~~~~~~~TvI~IaHrl~ti~~a 1181 (1224)
+ +.+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||+.+....|
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999875 578888876 589999999998876544
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=188.60 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEEe
Q 047171 1116 QLSGGQKQRIALARAVL----KNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAHRLSTIQKADNIVVIK 1188 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll----~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~aD~I~vl~ 1188 (1224)
.||||||||++|||+|. ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 689999999988888899999985
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=204.31 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=118.2
Q ss_pred ccEEEEEEEEECCCC--CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHH--------hcccCCCCceEEECCccCC
Q 047171 976 GFIELKNVFFSYPSR--PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLI--------ERFYDPQSGSVMVDERNIK 1045 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL--------~rl~~p~~G~I~idG~di~ 1045 (1224)
+.|++++..--+-.. .+..|++|++|++++|+.++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468888764333221 134689999999999999999999999999999999 55544443221
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1046 SYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1046 ~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
++++. .+|. .++ +.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11000 0110 011 00100 124788888888
Q ss_pred HHHHHH--ccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhH
Q 047171 1126 ALARAV--LKNPMILLLDEATSALDSASENLV-QEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSS 1200 (1224)
Q Consensus 1126 aLARAl--l~~p~ILlLDEaTSaLD~~te~~I-~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~e 1200 (1224)
.+|+++ +.+|+++||||||+++|+.....+ +..++.+. .++|+|++||..+....||++..+++|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877766 55555554 3899999999988888899999999999998877666
Q ss_pred H
Q 047171 1201 L 1201 (1224)
Q Consensus 1201 L 1201 (1224)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-18 Score=202.97 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=117.8
Q ss_pred EEEEEEEE---CCCCCCccce---------eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 979 ELKNVFFS---YPSRPDQMIF---------KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 979 ~~~~vsf~---Y~~~~~~~vL---------~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
+|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|.|+++|++|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8632 23466 9999999999999999999999999999999999999999999985 45
Q ss_pred CCHHHHhcceEEEe-cCCCC---CcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHH
Q 047171 1047 YNLRKLRSCIALVS-QEPTL---FAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQK 1122 (1224)
Q Consensus 1047 ~~~~~lR~~i~~V~-Qdp~L---F~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQr 1122 (1224)
+.+..+|+++++++ |++.+ +..|+++||..+....+|..+..+++.+.+++++..+|.|++|.+++.+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 788999999877554444444444445667889999999999999988888788999
Q ss_pred HHHHHHH
Q 047171 1123 QRIALAR 1129 (1224)
Q Consensus 1123 QRlaLAR 1129 (1224)
+|+....
T Consensus 294 ~Rl~~l~ 300 (361)
T 2gza_A 294 ERLALMV 300 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-17 Score=176.81 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=102.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCC-------CCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDP-------QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI 1074 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-------~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl 1074 (1224)
.|++||.++|+||||||||||++.|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 445888888653 11 2357778888888877999998
Q ss_pred ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH-------ccCCCEEEEeccCCCC
Q 047171 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV-------LKNPMILLLDEATSAL 1147 (1224)
Q Consensus 1075 ~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl-------l~~p~ILlLDEaTSaL 1147 (1224)
.+.... +..+ |++.+..++++ ..+|++|+|||||+.+
T Consensus 95 ~~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAF-NSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECC-SHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecC-ChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 876432 2111 11122222222 3489999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHhc--CCCeEEEEccCch----hhhh-cCEEEEEeCC
Q 047171 1148 DSA-------SE-----NLVQEALEKMM--VGRTCVVVAHRLS----TIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1148 D~~-------te-----~~I~~~l~~~~--~~~TvI~IaHrl~----ti~~-aD~I~vl~~G 1190 (1224)
|++ .+ ..+.+.|.+.. .++|+|+|+|..+ .+.. ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 984 22 24555555443 3899999999444 4766 9999999875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-17 Score=191.57 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=134.1
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCC-------CCHHHH
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK-------LQLKWL 389 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-------~~~~~~ 389 (1224)
-++.+++++.|+.. .+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++.++ .....+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~ 124 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL 124 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH
T ss_pred CeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh
Confidence 47788999998632 2577999999999999999999999999999999998875321 122334
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHHHHHHHHHHh
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~qriaiARal 468 (1224)
++.+.+++|... +. .+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 125 ~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la--- 182 (347)
T 2obl_A 125 SKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA--- 182 (347)
T ss_dssp TTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---
T ss_pred hceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---
Confidence 555666666421 11 2223223333333333322 233211 124567899999 999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEeCCcchhhccCEEEEEeCceEEeecChHHHH
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQAS---QGR-----TMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~---~~~-----t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
+.+|++ |+++|+.....+.+.++++. +|. |++++||+++ -.-||++++|.+|+|+.+|+.+++.
T Consensus 183 l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 183 SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 588888 99999999999999998875 366 8999999999 4459999999999999988777653
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-17 Score=187.67 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=108.9
Q ss_pred EEEEEECCCCCCccceeceeE-------EEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECCccCCCCCHHHH
Q 047171 981 KNVFFSYPSRPDQMIFKGLTL-------KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl-------~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~~~~l 1052 (1224)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5788888543 3467788877 78899999999999999999999999999987 567665444332 22 2
Q ss_pred hcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1053 RSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
+...++++|.+.-.. ..+-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 344566777643211 001110 9999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNG 1190 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G 1190 (1224)
.+|++|++|||| |.++.+.+.++ ...|+|||+++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776655554 34599999999999999889999887443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=185.56 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEEe
Q 047171 453 QLSGGQKQRIAIARALI----RDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVLQ 525 (1224)
Q Consensus 453 ~LSgGq~qriaiARal~----~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl~ 525 (1224)
.||||||||++||++|+ .+|++|||||||++||+.....+.+.+.+.. ++.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 6899999999999999999999999998875 3789999999988888899999986
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-18 Score=212.43 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=122.8
Q ss_pred cEEEEEEEEECCCCCCccceece----------eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEEECCccCC
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGL----------TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVMVDERNIK 1045 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~ 1045 (1224)
.++++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999632 23455444 366665 999999999999999999999988 7999999999863
Q ss_pred CC---CHHHHhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHH
Q 047171 1046 SY---NLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQ 1121 (1224)
Q Consensus 1046 ~~---~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQ 1121 (1224)
.. ....+|++++|++|++.+++ .||++||.... .. +. + .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~----~-------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IA----G-------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HH----C-------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hc----C-------Cccccc---
Confidence 21 24568899999999998875 58999886421 00 00 0 011122
Q ss_pred HHHHHHHHHHccCCCEEEEecc------CCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhh--------hh----
Q 047171 1122 KQRIALARAVLKNPMILLLDEA------TSALDSASENLVQEALEKMMV---GRTCVVVAHRLSTI--------QK---- 1180 (1224)
Q Consensus 1122 rQRlaLARAll~~p~ILlLDEa------TSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti--------~~---- 1180 (1224)
++++.++++...+|+++|+||| |++||+.+.+.+.+.++++.+ +.++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555555668999999999 999999999999999998642 45778889987632 22
Q ss_pred -cCEEEEEeCCEEEEecChhHHh
Q 047171 1181 -ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1181 -aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
...|+|+.++.+++.|+.++++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3569999999999999876554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-16 Score=175.66 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=115.9
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
++++++.. ++++.++|+||||||||||++.|+|...|++| .|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 25 Ld~i~~~l---~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 25 INDKTLGA---RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp HHHHHCSB---CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHhcCC---CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 45666544 45779999999999999999999999999988 77654432 3555666666555555432 223
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C-
Q 047171 409 ENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ-KQRIAIARALIRDPKILLLDEATS---A- 483 (1224)
Q Consensus 409 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq-~qriaiARal~~~~~ililDE~ts---~- 483 (1224)
+|+..+. .+.++..+. +.+.+...+-+ +.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 96 ~~l~~~~--~~~~~~~~~-----~~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 96 DSLKREI--IENGKFDQW-----FDELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHHHH--HHHTHHHHH-----HHHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred cccccCC--CCHHHHHHH-----HHHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 4443321 111222221 12222222222 334445789999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHc--CCCeEEEEeCCc--c--------------------hhhc-cCEEEEEeCceE
Q 047171 484 --LDA-ESERIVQEALDQAS--QGRTMIIIAHRL--S--------------------TIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 484 --lD~-~~~~~i~~~l~~~~--~~~t~i~i~H~l--~--------------------~~~~-ad~i~vl~~G~i 529 (1224)
+|. .....+.+.|+++. .|.|+|+++|.. + .+.+ ||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 344 44566777777653 389999999995 4 5554 999999999875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-17 Score=178.69 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc-----CCCCceEEE-------CCccCC
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY-----DPQSGSVMV-------DERNIK 1045 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di~ 1045 (1224)
|+++|++|+|+ .+++++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 788887754 222221
Q ss_pred C---C--------CHHHHhcceEEEecCCCCCcc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCC
Q 047171 1046 S---Y--------NLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER 1113 (1224)
Q Consensus 1046 ~---~--------~~~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~ 1113 (1224)
+ . ..+.+++.++++.|++..+++ ++..++..+. ...++++.+.++. ..+|. ..++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~-------~~~~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVD-------SNIAV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH-------TTCCE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHHHH-------cCCCe---EEEEec
Confidence 1 1 113455556666665433332 2222332221 1011223222211 11221 123444
Q ss_pred CCCCChHHHHH-HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC
Q 047171 1114 GVQLSGGQKQR-IALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMV 1164 (1224)
Q Consensus 1114 G~~LSGGQrQR-laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~ 1164 (1224)
...+|+||||| +..||+++++|+++++|||||++|......+.+.|.+..+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 55799999999 8999999999999999999999999999999999987653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-17 Score=181.49 Aligned_cols=146 Identities=25% Similarity=0.264 Sum_probs=102.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHH--hcceEEEecCCCCCc-ccHHHHHccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKL--RSCIALVSQEPTLFA-GTIRQNIVYG 1077 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Qdp~LF~-gTIreNl~~~ 1077 (1224)
+|+.++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..| |.++++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2333 467999999998775 4788888643
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCC---CCCCChHHHHHHHHHHHHccCCC--EEEEeccCCCCCHHHH
Q 047171 1078 KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGER---GVQLSGGQKQRIALARAVLKNPM--ILLLDEATSALDSASE 1152 (1224)
Q Consensus 1078 ~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~---G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSaLD~~te 1152 (1224)
. ..+.+.. -+|| .|.. ...++..++||.+||||+..+|+ +|.|| |+++.|
T Consensus 181 ~-------------~~~~d~~------llDt-~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~---- 235 (304)
T 1rj9_A 181 K-------------ARGYDLL------FVDT-AGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN---- 235 (304)
T ss_dssp H-------------HHTCSEE------EECC-CCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH----
T ss_pred H-------------hCCCCEE------EecC-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH----
Confidence 1 0010000 1122 1111 12246777999999999999999 55566 454443
Q ss_pred HHHHHHHHHhc--CCCeEEEEccCchh
Q 047171 1153 NLVQEALEKMM--VGRTCVVVAHRLST 1177 (1224)
Q Consensus 1153 ~~I~~~l~~~~--~~~TvI~IaHrl~t 1177 (1224)
+.+.+++.. .+.|+|++||.-.+
T Consensus 236 --~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 236 --GLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp --HHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred --HHHHHHHHHHHcCCcEEEEECCccc
Confidence 333333322 27899999997554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-18 Score=188.41 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC---C
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV---A 1081 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~---~ 1081 (1224)
++..|||+|+|||||||++++|.+++++. | .+ ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~---------~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG---------EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG---------GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC---------CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46789999999999999999999999863 2 10 4557777999999999999999764211 0
Q ss_pred CHHHHHHHHHHHhHHHHHHhcccccccc------cCCCCCCCChHHHHHHHHH--HHHccCCCEEEEeccCCCCCHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISSTEDGYDTY------CGERGVQLSGGQKQRIALA--RAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp~gldt~------vge~G~~LSGGQrQRlaLA--RAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
+....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222445678899999998764 4556789999999999998 666 999999999999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-18 Score=182.33 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=104.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc---ccHHHHHhcC--CC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS---TSIKENILIG--KP 416 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~---~ti~~ni~~g--~~ 416 (1224)
++.++||+||||||||||+++|.|++.| +++|++|++.+++ -|+++|+.+. .+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHP 62 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCCh
Confidence 4568999999999999999999999875 4899999998874 3777776553 22
Q ss_pred C-CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHH----HHHHHHHHHhccCCCEEEEeCCCCC-------C
Q 047171 417 G-ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQ----KQRIAIARALIRDPKILLLDEATSA-------L 484 (1224)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq----~qriaiARal~~~~~ililDE~ts~-------l 484 (1224)
. ...+.+.++++..+ ....+...+..+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 63 ~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALL-----------RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHH-----------TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHH-----------cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 2 22334444433222 2222334566788885 5799999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH--cCCCeEEEEeCCc
Q 047171 485 DAESERIVQEALDQA--SQGRTMIIIAHRL 512 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~--~~~~t~i~i~H~l 512 (1224)
|+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999998888888764 3589999999984
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=155.23 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCCCChHHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE--
Q 047171 1114 GVQLSGGQKQRIALARAVL----KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI-- 1187 (1224)
Q Consensus 1114 G~~LSGGQrQRlaLARAll----~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl-- 1187 (1224)
...||||||||++|||++. ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+..++..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988888999999999998899999865
Q ss_pred eCCEE
Q 047171 1188 KNGKV 1192 (1224)
Q Consensus 1188 ~~G~I 1192 (1224)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-19 Score=207.40 Aligned_cols=212 Identities=14% Similarity=0.017 Sum_probs=144.4
Q ss_pred HHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccc-cccc
Q 047171 249 QSWVGSVLVTE-RGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDRVPVINSEDEIGKTLA-YLRG 326 (1224)
Q Consensus 249 ~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~-~~~~ 326 (1224)
+.+.|++.+.. +.++.+.+.+++.++.....| .+......++.+..+.+|+++++ +|...... ...... ...+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~-~~~~ir~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGT-ISVTIRKPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTC-CEEEEECCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCC-eEEEEEecCCC
Confidence 44567666665 789999999988777665444 12222223344445667888877 33322110 000000 0123
Q ss_pred cE---------EEEeEEEE---CCC---------------C------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 047171 327 EI---------EFKDVDFS---YPT---------------R------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGN 373 (1224)
Q Consensus 327 ~i---------~~~~v~f~---y~~---------------~------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 373 (1224)
.+ +|+||+|+ |++ . ++++.++|+||||||||||+++|+|+++|++|.
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCCHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 35 89999999 863 1 256799999999999999999999999999999
Q ss_pred EEECCEecCCCCHHHHhcccEEec-CCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccC
Q 047171 374 ILLDGHKIKKLQLKWLRSQMGLVN-QEPIL---FSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ 449 (1224)
Q Consensus 374 i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---f~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 449 (1224)
|.++|. .++....+++.+++++ |++.+ +..|+++||.++.....+..+..+++.+++++++..+|.|++|.+++
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 999974 4555555778899999 98876 77899999998765433333333344456778999999999999998
Q ss_pred CCCCCChHHHHHHHHHHH
Q 047171 450 FGVQLSGGQKQRIAIARA 467 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARa 467 (1224)
-..+-..+..+|+.....
T Consensus 284 ~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 284 CHAGSCELTFERLALMVL 301 (361)
T ss_dssp EECSSHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 888888999999987763
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-17 Score=190.66 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=101.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+++|++++|+. .++++|+||+| +|||+||||||||++.|+|...|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 46899999999963 46999999998 99999999999999999999876555 244433211 1112467
Q ss_pred eEEEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1056 IALVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1056 i~~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
+++++|++.++ ..||.||+.++... +.++.|+. +.+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 99999998876 67999999887532 22222322 2233321 2345667899999999999
Q ss_pred CC---EEEEeccC-CCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1135 PM---ILLLDEAT-SALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1135 p~---ILlLDEaT-SaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
|+ +|++|||| ++||+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876422 33334578899999987754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-17 Score=200.98 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=116.5
Q ss_pred cEEEEeEEEECCCC-------------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEECCEecCC--C
Q 047171 327 EIEFKDVDFSYPTR-------------------PDTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNILLDGHKIKK--L 384 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~-------------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~~--~ 384 (1224)
.++++|+++.|+.. -..+.+|||||||||||||+++|+|++.| ++|.|+++|.++.. .
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~ 89 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL 89 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC
Confidence 46778888888521 12347999999999999999999999988 79999999999632 1
Q ss_pred -CHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH
Q 047171 385 -QLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI 462 (1224)
Q Consensus 385 -~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri 462 (1224)
....+|+.|||++|++.+++. ||++||.++. . .+.. .+..+| ++++
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~------~~~~-----------~~~~~s---~~~i 137 (608)
T 3szr_A 90 VNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------N------AIAG-----------EGMGIS---HELI 137 (608)
T ss_dssp SSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------H------HHHC-----------SSSCCC---SCCE
T ss_pred CccccceeEEeeecccccCCCHHHHHHHHHHHH------------H------HhcC-----------Cccccc---hHHH
Confidence 234578899999999988754 9999986421 0 0100 011112 2444
Q ss_pred HHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHc---CCCeEEEEeCCcchh--------hc-----cCE
Q 047171 463 AIARALIRDPKILLLDEA------TSALDAESERIVQEALDQAS---QGRTMIIIAHRLSTI--------RK-----ADL 520 (1224)
Q Consensus 463 aiARal~~~~~ililDE~------ts~lD~~~~~~i~~~l~~~~---~~~t~i~i~H~l~~~--------~~-----ad~ 520 (1224)
.++.+...+|+++++||| |++||+..+..+.+.+.+.. .+.++++++|+++.. +. ...
T Consensus 138 ~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rt 217 (608)
T 3szr_A 138 TLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRT 217 (608)
T ss_dssp EEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSE
T ss_pred HHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCce
Confidence 555555678999999999 99999999999999998853 256788899998733 11 356
Q ss_pred EEEEeCceEEeecChHHHH
Q 047171 521 IGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 521 i~vl~~G~i~~~g~~~~l~ 539 (1224)
|.|+.++.+++.|+.+++.
T Consensus 218 I~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 218 IGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp EEEEECGGGSSSSSTTCCC
T ss_pred EEEecchhhcCcccHHHHH
Confidence 8999999998888765544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-17 Score=193.67 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCC----cEEEE----CCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVK----GNILL----DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG 414 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g 414 (1224)
+++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.+|+.|++|||.++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999999999 99987 45555 4555555 569999999999999999999987
Q ss_pred CCC
Q 047171 415 KPG 417 (1224)
Q Consensus 415 ~~~ 417 (1224)
..+
T Consensus 248 ~~~ 250 (365)
T 1lw7_A 248 DTD 250 (365)
T ss_dssp SSC
T ss_pred eCC
Confidence 643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-16 Score=184.82 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCC----cE-EEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFY--DPVK----GN-ILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 413 (1224)
+++.+++|+||||||||||++.+++.+ +|++ |. |++++.+.. .++++++++|++.++..++.+||.+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~~ni~~ 202 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVLKHIYV 202 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHGGGEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHhhCEEE
Confidence 456799999999999999999999998 6766 68 899987641 2467889999998888899999987
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEEEeCCCCCCCH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI-------RDPKILLLDEATSALDA 486 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~-------~~~~ililDE~ts~lD~ 486 (1224)
.... + |++|+|++.++++++ .+|+++|+||||+.+|+
T Consensus 203 ~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 203 ARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp EECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred EecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 6431 1 244666666666666 68999999999999998
Q ss_pred HH-------H-----HHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHH
Q 047171 487 ES-------E-----RIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 487 ~~-------~-----~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
+. + ..+...|.++. .|.|+|+++|....... .+.+.+...|++++++.+..|.
T Consensus 247 ~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 247 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 62 1 23333444432 48999999998875543 3456778889999888877664
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.4e-16 Score=172.93 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=101.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHH--hcccEEecCCCCCCcc-cHHHHHhcC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWL--RSQMGLVNQEPILFST-SIKENILIG 414 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~lf~~-ti~~ni~~g 414 (1224)
++++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.++++|+|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999986543 1222 4579999999988765 888888643
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhccccccccccC---CCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHH
Q 047171 415 KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQ---FGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSALDAESE 489 (1224)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~---~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~lD~~~~ 489 (1224)
. ..+.+..+ +|| .|. ....++..+|||++||||+..+|+ +|.|| |+++.|
T Consensus 181 ~-------------~~~~d~~l------lDt-~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~---- 235 (304)
T 1rj9_A 181 K-------------ARGYDLLF------VDT-AGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN---- 235 (304)
T ss_dssp H-------------HHTCSEEE------ECC-CCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH----
T ss_pred H-------------hCCCCEEE------ecC-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH----
Confidence 1 00100000 121 111 112246677999999999999999 55566 444443
Q ss_pred HHHHHHHHHH--cCCCeEEEEeCCcchh
Q 047171 490 RIVQEALDQA--SQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 490 ~~i~~~l~~~--~~~~t~i~i~H~l~~~ 515 (1224)
+.+.++.. ..+.|+|++||...+.
T Consensus 236 --~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 236 --GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp --HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred --HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 22233322 1378999999986543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=153.84 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=71.6
Q ss_pred CCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEE-
Q 047171 450 FGVQLSGGQKQRIAIARALI----RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVL- 524 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~----~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl- 524 (1224)
....||||||||++|||+++ ++|+++||||||++||+.+...+.+.|++..++.++|+|||+......||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34789999999999999996 5679999999999999999999999999888888999999999988889999865
Q ss_pred -eCceE
Q 047171 525 -QSGRV 529 (1224)
Q Consensus 525 -~~G~i 529 (1224)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56753
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-16 Score=170.31 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCC-------CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDP-------VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI 413 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~ 413 (1224)
+++++++|+||||||||||++.|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~~~ 96 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHIYV 96 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcEEE
Confidence 35679999999999999999999996655 445888887642 11 235778888888887899999987
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHH----
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLLDEATSALDAE---- 487 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ililDE~ts~lD~~---- 487 (1224)
..+.. ..+.....+ .+.+.+. +++ ..+|++++|||||+.+|++
T Consensus 97 ~~~~~-~~~~~~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~~~ 145 (231)
T 4a74_A 97 ARAFN-SNHQMLLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYIGR 145 (231)
T ss_dssp EECCS-HHHHHHHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSCST
T ss_pred EecCC-hHHHHHHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccCCC
Confidence 65422 111111110 1111111 111 3589999999999999984
Q ss_pred ---HH-----HHHHHHHHHH--cCCCeEEEEeCCcc----hhhc-cCEEEEEeCce
Q 047171 488 ---SE-----RIVQEALDQA--SQGRTMIIIAHRLS----TIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 488 ---~~-----~~i~~~l~~~--~~~~t~i~i~H~l~----~~~~-ad~i~vl~~G~ 528 (1224)
.+ ..+.+.+.++ ..|.|+|+++|..+ .+.+ ||++++|++|+
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 146 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 22 1444555443 24899999999544 4765 99999998753
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-17 Score=183.25 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=79.8
Q ss_pred EEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-cCCCCceEEECCccCCCCCHHHHhcceEEE
Q 047171 981 KNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF-YDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059 (1224)
Q Consensus 981 ~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-~~p~~G~I~idG~di~~~~~~~lR~~i~~V 1059 (1224)
+|+++.|. ...+++|++|+| +|+|+||+|||||++.|+|. ..|.+| |.++|.++.. .. -++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEE
Confidence 46888885 346999999998 99999999999999999998 888999 9999987653 11 24668999
Q ss_pred ecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEE
Q 047171 1060 SQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMIL 1138 (1224)
Q Consensus 1060 ~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~IL 1138 (1224)
+|++.++ .-|+.|+..++......+..... .+++.. -++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l------~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTI------ISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTH------HHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHH------HHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56888887765321111111111 111111 112222 248999999999999986 99
Q ss_pred EEeccCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEccCchh
Q 047171 1139 LLDEATSA-LDSASENLVQEALEKMMV--GRTCVVVAHRLST 1177 (1224)
Q Consensus 1139 lLDEaTSa-LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~t 1177 (1224)
++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 33433333 4567777898753
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=193.97 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE-EecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG-LVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
+.+++|+|||||||||+++.+ |++.+ ..++| ||||++. .-|+.|||.. +-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~--~l~v~d~I~~-ri----- 839 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC--RLTPIDRVFT-RL----- 839 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE--EECCCSBEEE-EC-----
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC--CCCHHHHHHH-Hc-----
Confidence 579999999999999999999 98763 34677 9999873 4577777642 11
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHc
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES-ERIVQEALDQAS 500 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~-~~~i~~~l~~~~ 500 (1224)
++.+.+ ..+..++|+++++ +++||+++.+|+++||||||+++|+.. ...+++.++.+.
T Consensus 840 ---------g~~d~~-----------~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~ 898 (1022)
T 2o8b_B 840 ---------GASDRI-----------MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA 898 (1022)
T ss_dssp ---------C--------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHH-----------hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 111111 1122467777775 999999999999999999999999986 455677777654
Q ss_pred -C-CCeEEEEeCCcchhhc-cCEEEEEeCceEE--eecCh
Q 047171 501 -Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVI--ESGSH 535 (1224)
Q Consensus 501 -~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~--~~g~~ 535 (1224)
+ |+|+|++||+++.+.. +|++.++ +|++. +.|+.
T Consensus 899 ~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 899 ETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred hcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 3 8999999999999876 9998886 58887 45544
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-17 Score=183.47 Aligned_cols=127 Identities=11% Similarity=0.064 Sum_probs=93.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCC---CCH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPG---ASM 420 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~---~~~ 420 (1224)
.+++|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.++ ...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~ 95 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQG 95 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchhhh
Confidence 489999999999999999999999864 2 0 0 3456666999999999999999876421 000
Q ss_pred HHHHHHHHHhcHHHHHHhcccccccc------ccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETK------VGQFGVQLSGGQKQRIAIA--RALIRDPKILLLDEATSALDAES 488 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~------~~~~g~~LSgGq~qriaiA--Ral~~~~~ililDE~ts~lD~~~ 488 (1224)
....++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 96 ~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 96 RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00111222345678899999997763 5567789999999999998 665 999999999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-15 Score=163.42 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=114.6
Q ss_pred ccceeceeE-EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc---ceEEEecCCCCCcc
Q 047171 993 QMIFKGLTL-KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS---CIALVSQEPTLFAG 1068 (1224)
Q Consensus 993 ~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~---~i~~V~Qdp~LF~g 1068 (1224)
.+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.+.+.+.+. +.+.+++ .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457899998 8999999999999999999999999998888888888876544 2333332 34444443211
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeccCCC
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM--ILLLDEATSA 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~--ILlLDEaTSa 1146 (1224)
+++..... .... .+ + ..+- ...|.+|.++...+.+...+|+ +|++||||+.
T Consensus 83 ---~~~~~~~~-~~~~--------~~--------~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMKE--------KE--------D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-cccc--------cC--------c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 11111100 0000 00 0 0011 1348999998888887778999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEccCc--------hhhhh-cCEEEEEeCC
Q 047171 1147 L--DSASENLVQEALEKMM--VGRTCVVVAHRL--------STIQK-ADNIVVIKNG 1190 (1224)
Q Consensus 1147 L--D~~te~~I~~~l~~~~--~~~TvI~IaHrl--------~ti~~-aD~I~vl~~G 1190 (1224)
+ |+.....+.+.|.++. .++|+|+++|.. ..+.. ||+|++|+..
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 9988888888887764 488999999998 44655 9999999754
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-16 Score=192.28 Aligned_cols=142 Identities=19% Similarity=0.217 Sum_probs=105.8
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYD-PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
...++|++|. +++++|+|||||||||++++++|+.. ++.|.+.- ..+..+++++| +|..
T Consensus 566 ~~vl~disl~------g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~~~~i~~v~~---i~~~ 625 (765)
T 1ewq_A 566 EFVPNDLEMA------HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AEEAHLPLFDG---IYTR 625 (765)
T ss_dssp CCCCEEEEES------SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SSEEEECCCSE---EEEE
T ss_pred ceEeeeccCC------CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hhccceeeHHH---hhcc
Confidence 3456777775 56999999999999999999999874 67786521 12456888887 5543
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC--
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLLDEA-- 480 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ililDE~-- 480 (1224)
++.||+.. .+|+|++|++.+|+++ +.+|+++|||||
T Consensus 626 ~~~~d~l~~---------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 626 IGASDDLAG---------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp CCC---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred CCHHHHHHh---------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 66666543 2588999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEe
Q 047171 481 -TSALDAESE-RIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIE 531 (1224)
Q Consensus 481 -ts~lD~~~~-~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~ 531 (1224)
||+||..+. ..+.+.+.+ .|.|+|++||+.+....+ .-.+.++++..
T Consensus 667 GTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 999999875 567777766 589999999998876655 22344555543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-16 Score=174.32 Aligned_cols=171 Identities=12% Similarity=0.146 Sum_probs=103.9
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccH
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 407 (1224)
..++||||.-+ ++.++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++....-|+
T Consensus 13 ~~l~~isl~i~---~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 13 LGTENLYFQSM---RPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp ----------C---CSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred eeecceeccCC---CCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 46889999864 45699999999999999999999976 555444 35678999999974334589
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 408 KENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 408 ~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
.+|+.+.... ....+-.. ...+.+.+..+..+.+. ....||+||+||+++ ++++.+|+++|||||....|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFD---NDLMHRTLKNIVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBC---HHHHHHHHHHHHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred hHhhhhhccCCCCCCccccc---HHHHHHHHHHHHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9998653211 11000000 00112223333333332 346799999999998 68899999999999988877
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCCcchh-hc-cCEEEEEeCceEEeecChHHHHh
Q 047171 486 AESERIVQEALDQASQGRTMIIIAHRLSTI-RK-ADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~-~~-ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
..- .+. .+.|++++||....+ +. ++.+ ++|+ +.+++.+
T Consensus 148 ~~l--------~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QEI--------RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HHH--------HTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred HHH--------HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 642 122 378999999974433 43 4434 6664 5566543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.9e-16 Score=164.68 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=105.0
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cH----HHH
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TI----RQN 1073 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TI----reN 1073 (1224)
-..++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. |+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 36789999999999999999999999999986 68999999877643 246789999999988864 34 455
Q ss_pred HccCCCC--CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 047171 1074 IVYGKEV--ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1074 l~~~~~~--~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
+.+.... .+.++ ++.++.+++++||| ||+.+
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5443110 01111 23334456999999 99999
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 047171 1152 ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1152 e~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
...+.+.+. +++|+++++|+++.+.. |+ +.+| .|+++++..
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999998875 57899999999998866 33 6677 678888754
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-15 Score=191.61 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=103.4
Q ss_pred ccEEEEEEEEECC------CCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 976 GFIELKNVFFSYP------SRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 976 g~I~~~~vsf~Y~------~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
+.|++++. ++| ...+..|++|+||++++|+.++|+|||||||||+++.+.+..-.
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~----------------- 699 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM----------------- 699 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-----------------
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-----------------
Confidence 35777764 343 11245799999999999999999999999999999998654211
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1050 RKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1050 ~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
.+.-.+||++..-+ .+.+++. . . .++.+. +..+-+.+|+|++|+..|+|
T Consensus 700 ---aq~g~~vpa~~~~i--~~~d~i~-~--~------------ig~~d~-----------l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 700 ---AQIGSYVPAEEATI--GIVDGIF-T--R------------MGAADN-----------IYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp ---HHHTCCBSSSEEEE--ECCSEEE-E--E------------C---------------------CCHHHHHHHHHHHHH
T ss_pred ---hhcCccccchhhhh--hHHHHHH-H--h------------CChHHH-----------HHHhHHHhhHHHHHHHHHHH
Confidence 01112233322100 0000110 0 0 001111 11223568999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHH-HHHHHhc--CCCeEEEEccCchhhhhcCE
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLVQ-EALEKMM--VGRTCVVVAHRLSTIQKADN 1183 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I~-~~l~~~~--~~~TvI~IaHrl~ti~~aD~ 1183 (1224)
+ +.+|+++||||||+++|+.....+. ..++.+. .|+|+|++||.++....||+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 9 8999999999999999998777775 5555542 48999999999887765654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=183.23 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=106.1
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHH--------hcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLL--------ERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQE 399 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll--------~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 399 (1224)
...+|++|.-+ .+++++|+|||||||||+++.+ .|.+-|.++.. ++.+.
T Consensus 650 ~v~ndisl~~~---~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------------------~~~~d-- 706 (934)
T 3thx_A 650 FIPNDVYFEKD---KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------------------VSIVD-- 706 (934)
T ss_dssp CCCEEEEEETT---TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE------------------EECCS--
T ss_pred eecccceeecC---CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc------------------chHHH--
Confidence 45677787653 4679999999999999999999 66665544321 11110
Q ss_pred CCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEE
Q 047171 400 PILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLL 477 (1224)
Q Consensus 400 ~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ilil 477 (1224)
.+|. .+|. .+. ....+|+|++++..+|+++ +.+|+++||
T Consensus 707 -~i~~-------~ig~-----------------~d~--------------l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 707 -CILA-------RVGA-----------------GDS--------------QLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp -EEEE-------ECC----------------------------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred -HHHH-------hcCc-----------------hhh--------------HHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 0111 0110 000 0134788888888888888 899999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHH
Q 047171 478 DEATSALDAESERIV-QEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLM 539 (1224)
Q Consensus 478 DE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~ 539 (1224)
||||+++|+.....+ +..++.+. .|+|+|++||+.+....||++..+++|++...++.+++.
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 999999999877666 55555543 489999999998888889999999999999888776653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-17 Score=176.66 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC-CCC
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVA 1081 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~-~~~ 1081 (1224)
.++|+++||+||||||||||+++|.|+++|. | ..+++|+||++.++.+.++|+.... ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999976 5 2588899998888888877764211 111
Q ss_pred CHHHHHHHHHHHhHHHHHHhcccc--cccccCCCCCCCChHHHHHHHHH-HHHccCCCEEEEeccC
Q 047171 1082 TEAEIRKAAVLANAHEFISSTEDG--YDTYCGERGVQLSGGQKQRIALA-RAVLKNPMILLLDEAT 1144 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp~g--ldt~vge~G~~LSGGQrQRlaLA-RAll~~p~ILlLDEaT 1144 (1224)
..+.....+.+++..++.| +++++.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1111122334455555555 78889999999999999999998 9999999999999984
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-16 Score=173.90 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCCCHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERF-YDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMET 422 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~~~~~ 422 (1224)
.++|+|+||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.+++++|++.++ .-||.|+..+|......++
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 6799999999999999999998 889999 8888887653 11 1 35689999987655 4589998877643110011
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHc-
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA-LDAESERIVQEALDQAS- 500 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~-lD~~~~~~i~~~l~~~~- 500 (1224)
... +.+++... . .....++|||||||+++|||+. ++++||||++ ||+... +.++.+.
T Consensus 96 ~~~------l~~~l~~~---~----~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~ 154 (301)
T 2qnr_A 96 FKT------IISYIDEQ---F----ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN 154 (301)
T ss_dssp CTT------HHHHHHHH---H----HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT
T ss_pred HHH------HHHHHHHH---H----HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh
Confidence 111 11111110 1 1223468999999999999986 9999999985 999874 3333333
Q ss_pred -CCCeEEEEeCCcch
Q 047171 501 -QGRTMIIIAHRLST 514 (1224)
Q Consensus 501 -~~~t~i~i~H~l~~ 514 (1224)
.+.++|+..|++.+
T Consensus 155 ~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 155 KVNIVPVIAKADTLT 169 (301)
T ss_dssp TSCEEEEECCGGGSC
T ss_pred cCCEEEEEEeCCCCC
Confidence 25677778888753
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-15 Score=173.45 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=116.1
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcE--EEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKT--VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 778853 34 9999999999999 9999999999999999999983 4566655444445577
Q ss_pred ceEEEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHH---HHhHHHHHHhc-------ccccccc-------cCCCCCC
Q 047171 1055 CIALVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAV---LANAHEFISST-------EDGYDTY-------CGERGVQ 1116 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~---~a~l~~~I~~l-------p~gldt~-------vge~G~~ 1116 (1224)
.+++++|++.++ ..|+.||+.++.. .+.+..|+... ...+.+++... +..-|+. +-+.+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999999887 5799999998853 33332222210 11223333322 1112332 1234456
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEccC
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK-MM-VGRTCVVVAHR 1174 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaHr 1174 (1224)
|+..+ +.++|+|-.+++|+++||||..|.+.-...+.+.+++ +. .|.+++.|+.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 77776 7899999999999999999999998766777777775 43 47788888753
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-15 Score=177.39 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=95.1
Q ss_pred ccEEEEeEEEECCCCCCC----CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 326 GEIEFKDVDFSYPTRPDT----PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~~~~----~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
+.|+++|++++|++.... ..++|||+||||||||++.|+|...|..| .+|.++... ....++.+++++|++.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQSKVLIKEGG 85 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC-----
T ss_pred CcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeEEEEEecCC
Confidence 458899999999754311 16899999999999999999999886655 233332211 1112356899999988
Q ss_pred CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC---EEEE
Q 047171 402 LF-STSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK---ILLL 477 (1224)
Q Consensus 402 lf-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~---ilil 477 (1224)
++ ..||.||+.++... ..++.++. +.+++.. .++.+++||++||||++++|+ +|++
T Consensus 86 ~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp -CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred cccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 77 55999999887541 11111111 1223321 234566789999999999999 9999
Q ss_pred eCCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 478 DEAT-SALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 478 DE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
|||| ++||+.....+ +.+..+.++|+|.|+.+.+
T Consensus 146 dePt~~~L~~~d~~~l----k~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 146 IAPSGHGLKPLDIEFM----KRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCC-CCSCCHHHHHHH----HHHTTTSEEEEEEESTTSS
T ss_pred ecCcccCCCHHHHHHH----HHHhccCcEEEEEEcccCc
Confidence 9999 69998764333 3344578999999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-15 Score=185.80 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=109.9
Q ss_pred ccEEEEEEEEECCCC----CCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEEECCccCCCCCHH
Q 047171 976 GFIELKNVFFSYPSR----PDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~----~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~~~~~ 1050 (1224)
+.|++++. ++|-- ++..+++|+||+ ++|+.++|+|||||||||+++++.|+.-+ ..|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 35777765 34421 235689999999 99999999999999999999999997532 2231 1111
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1051 KLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1051 ~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
-+.++++++| +|. -++.||+..+ -+.+|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHH
Confidence 1245666665 333 2444443211 1236777665 44444
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 047171 1130 AVLKNPMILLLDEATSALDSASENLV-QEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195 (1224)
Q Consensus 1130 All~~p~ILlLDEaTSaLD~~te~~I-~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~ 1195 (1224)
..+.+|+++||||||+++|+.....+ ++.++.+. .++|+|++||.++....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 56899999999999999998654443 66666554 38999999999988777888777777776543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-14 Score=154.57 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=98.2
Q ss_pred cceeceeE-EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 994 MIFKGLTL-KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 994 ~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
+.|+++.. .+++|+.++|+||+||||||+++.+++ .+..+.++++..+ ..+.+.+ ++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------VQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------HH
Confidence 46777776 799999999999999999999999999 4334445554432 1122222 22
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChH--HHHHHHHHHHHccC-CCEEEEeccCCCCCH
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGG--QKQRIALARAVLKN-PMILLLDEATSALDS 1149 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGG--QrQRlaLARAll~~-p~ILlLDEaTSaLD~ 1149 (1224)
..... ..+.+++ ...+ .+. .+|++ |+|+++.+|+++++ |+++|+||||+.+|.
T Consensus 65 ~~~~~--~~~~~~~------------~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETR--GLNPEEA------------LSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTT--TCCHHHH------------HHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhc--CCChHHH------------hhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11110 1112211 1111 111 23344 47899999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHHhcC--CCeEEEEccCch-------------hhh-hcCEEEEEeCC
Q 047171 1150 ASE--------NLVQEALEKMMV--GRTCVVVAHRLS-------------TIQ-KADNIVVIKNG 1190 (1224)
Q Consensus 1150 ~te--------~~I~~~l~~~~~--~~TvI~IaHrl~-------------ti~-~aD~I~vl~~G 1190 (1224)
..+ ..+.+.|+++.+ ++|+|+++|... .+. .||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 543 234444555543 889999999865 344 49999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-15 Score=169.06 Aligned_cols=121 Identities=26% Similarity=0.332 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV-KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETV 423 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~ 423 (1224)
.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. ++...++++|.+.-.. ..+..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~~~~~~v~q~~~~~~------------~~~~~~- 187 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HESKKCLVNQREVHRD------------TLGFSE- 187 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CCCSSSEEEEEEBTTT------------BSCHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hhccccceeeeeeccc------------cCCHHH-
Confidence 89999999999999999999999997 56665433222 221 2234455666432110 011111
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGR 503 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~ 503 (1224)
+|||||..+|+++++|||| |.++.+.+.++ ...|+
T Consensus 188 ---------------------------------------~La~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~ 222 (356)
T 3jvv_A 188 ---------------------------------------ALRSALREDPDIILVGEMR---DLETIRLALTA---AETGH 222 (356)
T ss_dssp ---------------------------------------HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTC
T ss_pred ---------------------------------------HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCC
Confidence 9999999999999999999 77775554443 44699
Q ss_pred eEEEEeCCcchhhccCEEEEEeCc
Q 047171 504 TMIIIAHRLSTIRKADLIGVLQSG 527 (1224)
Q Consensus 504 t~i~i~H~l~~~~~ad~i~vl~~G 527 (1224)
|+++++|+.+.+..+||+++|..|
T Consensus 223 ~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 223 LVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp EEEEEESCSSHHHHHHHHHHTSCH
T ss_pred EEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999889999988655
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-14 Score=157.05 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=100.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc-cCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV-YGKEV 1080 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~-~~~~~ 1080 (1224)
.+++|+.++|+||+|||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 57763 4554321 3457888776543 22333332 221 1
Q ss_pred CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC--CCCHHHH---HHH
Q 047171 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS--ALDSASE---NLV 1155 (1224)
Q Consensus 1081 ~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS--aLD~~te---~~I 1155 (1224)
..+++..+.++. + ++....+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~---------l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADG---------L--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHH---------E--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCc---------e--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 233322222221 1 233344556778999998865 68899999999999999 9998544 667
Q ss_pred HHHHHHhc--CCCeEEEEccCchhh
Q 047171 1156 QEALEKMM--VGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1156 ~~~l~~~~--~~~TvI~IaHrl~ti 1178 (1224)
.+.|.++. .++|||+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777664 389999999987654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-16 Score=180.48 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc--------CCCCceEEECCccCCCCC---------------HHHHhcceEEE---e
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY--------DPQSGSVMVDERNIKSYN---------------LRKLRSCIALV---S 1060 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~--------~p~~G~I~idG~di~~~~---------------~~~lR~~i~~V---~ 1060 (1224)
+.++|+|+|||||||+++.|+|++ .|+.|+|.|||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999998 789999999999987763 34678889988 7
Q ss_pred cCCC-CCcccHHHHHccCCCCCCHHHHHHHH-HHHhHHHHHHhcccccccccCCC-----CCCCChHHHHHHHHHHHHcc
Q 047171 1061 QEPT-LFAGTIRQNIVYGKEVATEAEIRKAA-VLANAHEFISSTEDGYDTYCGER-----GVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1061 Qdp~-LF~gTIreNl~~~~~~~~deei~~al-~~a~l~~~I~~lp~gldt~vge~-----G~~LSGGQrQRlaLARAll~ 1133 (1224)
|++. .|+.++.||+.++.| ..+.+.. ......+. ..+ ++.-+.++-. -.+||+||+||.+.+|+++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 8876 468899999987743 2222221 00000000 000 0111222110 01589999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS 1176 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1176 (1224)
+|+++ ||| +.+.+.+++..++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 988 677788877777899999999643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-15 Score=161.59 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=93.0
Q ss_pred EEEEeEEEECCC-------CCCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEE-------CCEecCCCC---
Q 047171 328 IEFKDVDFSYPT-------RPDTPTIGLVGSSGSGKSTVISLLERFY-----DPVKGNILL-------DGHKIKKLQ--- 385 (1224)
Q Consensus 328 i~~~~v~f~y~~-------~~~~~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~-------~g~~~~~~~--- 385 (1224)
|+++|++|.|+. .+++..++|+|++|||||||++.|+|.. .|+.|.+.. ++..+.+.+
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~ 83 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 83 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCc
Confidence 678888888842 1234589999999999999999999998 888888754 233332211
Q ss_pred --------HHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccc-cccCCCCCCC
Q 047171 386 --------LKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET-KVGQFGVQLS 455 (1224)
Q Consensus 386 --------~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LS 455 (1224)
.+.+++.++++.|+...+++ .+..++..+ .+..+ .+ +.+++... +... .++.+...+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~------~~~~~~~~--~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQ------MIEWAVDS--NIAVLVLLTKADKLA 151 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HH------HHHHHHHT--TCCEEEEEECGGGSC
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HH------HHHHHHHc--CCCeEEEEecccCCC
Confidence 12344455555554333222 222233222 12211 01 11222221 3332 3477777899
Q ss_pred hHHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 456 GGQKQR-IAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 456 gGq~qr-iaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+||||| +..||+++.+|+++++|||||++|.+....+.+.|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 999999 89999999999999999999999999888888888764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-16 Score=178.93 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC--------CCCCcEEEECCEecCCCC---------------HHHHhcccEEe---c
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY--------DPVKGNILLDGHKIKKLQ---------------LKWLRSQMGLV---N 397 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 397 (1224)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 478999999999999999999998 789999999999987653 34567789988 6
Q ss_pred CCCCC-CcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhccccccccccC-----CCCCCChHHHHHHHHHHHhcc
Q 047171 398 QEPIL-FSTSIKENILIGKPGASMETVVKAA-QAANVHDFIMKLNDGYETKVGQ-----FGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 398 Q~~~l-f~~ti~~ni~~g~~~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~-----~g~~LSgGq~qriaiARal~~ 470 (1224)
|++.+ |+.++.||+.++.|. .+.+.. ......+ -..+. +.-+.++- .-.+||||||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~-~~~l~-~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQ-RYLLD-GVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHH-HEEEE-EEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccC-eEEEC-CEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 677999999887542 222111 0000000 00110 11111111 112689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcc
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLS 513 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~ 513 (1224)
+|+++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 998 667777777777899999999743
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-15 Score=159.51 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=101.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH----HHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI----KENILI 413 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~~ni~~ 413 (1224)
++++.++|+||||||||||+++|+|+++| ..|+|.+.+.+.+. ..++.++|++|++.+|.. ++ .||+.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 56789999999999999999999999986 78999998876543 235679999999887765 44 355443
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 047171 414 GKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQ 493 (1224)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~ 493 (1224)
.... |.+ .+++ ++.++..++++||| ||+.+...+.
T Consensus 90 ~~~~-------------------------yg~------------~~~~---v~~~l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 90 FGNY-------------------------YGT------------SREA---IEQVLATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp TTEE-------------------------EEE------------EHHH---HHHHHTTTCEEEEE-----CCHHHHHHHH
T ss_pred Hhcc-------------------------CCC------------CHHH---HHHHHhcCCeEEEE-----ECHHHHHHHH
Confidence 2110 000 0111 23334457999999 9999999998
Q ss_pred HHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHh
Q 047171 494 EALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540 (1224)
Q Consensus 494 ~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~ 540 (1224)
+.+. +++|+++++|+++.+.. |+ +..| .++.+++.+
T Consensus 125 ~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 125 QKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 8775 58899999999998876 32 5666 567777654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-15 Score=160.94 Aligned_cols=139 Identities=16% Similarity=0.087 Sum_probs=91.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVA 1081 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~ 1081 (1224)
.+++|+.++|+|+|||||||++++|.+. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 678999999987643211 1345788888765 45688888754210
Q ss_pred CHHHHHHHHHHHhHHHHHHhcc--cccccc--cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISSTE--DGYDTY--CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp--~gldt~--vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~ 1157 (1224)
.. . ..+....+.... .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 78 ----~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 78 ----RY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ----HH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ----HH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 0 000000000000 011100 02233569999999999999999999987 57777766666
Q ss_pred HHHHh
Q 047171 1158 ALEKM 1162 (1224)
Q Consensus 1158 ~l~~~ 1162 (1224)
.++.+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 66543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=169.10 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCc
Q 047171 451 GVQL-SGGQKQRIAIARALIRDP--KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSG 527 (1224)
Q Consensus 451 g~~L-SgGq~qriaiARal~~~~--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G 527 (1224)
..+| ||||||||+|||||+.+| ++|||||||++||+.+...+.+.|.++.+|+|+|+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 9999999999999999999999998877789999999999988889999999655
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=149.92 Aligned_cols=155 Identities=14% Similarity=0.023 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc---ccEEecCCCCCCcccHHHHHhcCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS---QMGLVNQEPILFSTSIKENILIGKPG 417 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~ti~~ni~~g~~~ 417 (1224)
+++..++|+||||||||||++.|++...+.+|.+.+.+.+. +.+.+++ .+++.+|+... +++.+-..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 90 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE------KKLIIIDA- 90 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT------TTEEEEEC-
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh------CCEEEEec-
Confidence 35679999999999999999999998888888887755433 2333222 34444433210 01111000
Q ss_pred CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC--CHHHHHHHH
Q 047171 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK--ILLLDEATSAL--DAESERIVQ 493 (1224)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~--ililDE~ts~l--D~~~~~~i~ 493 (1224)
... . . + ...+- ...|.+|.++...+.+...+|+ ++++||||+.+ |+.....+.
T Consensus 91 ~~~-~-------------~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 91 LMK-E-------------K-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp CC------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred ccc-c-------------c-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 000 0 0 0 00011 2348999999888887778999 99999999888 988777777
Q ss_pred HHHHHHc--CCCeEEEEeCCc--------chhhc-cCEEEEEeCce
Q 047171 494 EALDQAS--QGRTMIIIAHRL--------STIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 494 ~~l~~~~--~~~t~i~i~H~l--------~~~~~-ad~i~vl~~G~ 528 (1224)
+.|.++. .|.|+|+++|.. +.+.+ ||+|++|++.+
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 7777653 488999999998 44665 99999998653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-15 Score=163.43 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhc-CCCCCCH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILI-GKPGASM 420 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~-g~~~~~~ 420 (1224)
++++++|+||||||||||+++|+|+++|+ | ..+|+|+|+.+.++.+..+|+.. .....
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~-- 79 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA-- 79 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC--
Confidence 45689999999999999999999999976 4 14788888888787777777531 11111
Q ss_pred HHHHHHHHHhcHHHHHHhcccc--ccccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 047171 421 ETVVKAAQAANVHDFIMKLNDG--YETKVGQFGVQLSGGQKQRIAIA-RALIRDPKILLLDEATSALDAESERIVQEALD 497 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g--~~t~~~~~g~~LSgGq~qriaiA-Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~ 497 (1224)
..+.....+.+++..++.| +++.+.+++..+||||+||+++| |+++.++.++++|||... .+.
T Consensus 80 ---~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-----------~l~ 145 (208)
T 3c8u_A 80 ---PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-----------DLT 145 (208)
T ss_dssp ---GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG-----------GGG
T ss_pred ---CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH-----------HHH
Confidence 1111122334556666655 67788999999999999999998 999999999889998421 111
Q ss_pred HHcCCCeEEEEeCCcch
Q 047171 498 QASQGRTMIIIAHRLST 514 (1224)
Q Consensus 498 ~~~~~~t~i~i~H~l~~ 514 (1224)
.. -.++|.+.+..+.
T Consensus 146 ~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 146 AI--WDVSIRLEVPMAD 160 (208)
T ss_dssp GT--CSEEEEECCCHHH
T ss_pred Hh--cCEEEEEeCCHHH
Confidence 11 1367777777665
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-13 Score=173.49 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=96.0
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCccc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTS 406 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 406 (1224)
....+||+|.-+ ++++++|+|||||||||+++.+.+..- +.+.-.+||++..-+ .
T Consensus 660 ~~V~ndvsl~~~---~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~aq~g~~vpa~~~~i--~ 714 (918)
T 3thx_B 660 QYVPNNTDLSED---SERVMIITGPNMGGKSSYIKQVALITI--------------------MAQIGSYVPAEEATI--G 714 (918)
T ss_dssp SSCCEEEEECTT---SCCEEEEESCCCHHHHHHHHHHHHHHH--------------------HHHHTCCBSSSEEEE--E
T ss_pred ceecccccccCC---CCeEEEEECCCCCchHHHHHHHHHHHH--------------------HhhcCccccchhhhh--h
Confidence 345678888643 467999999999999999999865311 001112333322100 0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
+.+++ |.. + |....+..+.+++|+|++|+..|+|+ +.+|+++||||||+++|+
T Consensus 715 ~~d~i-~~~-----------------------i--g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 715 IVDGI-FTR-----------------------M--GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp CCSEE-EEE-----------------------C------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HHHHH-HHh-----------------------C--ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 00111 000 0 11111223346789999999999999 799999999999999999
Q ss_pred HHHHHHH-HHHHHH-c-CCCeEEEEeCCcchhhccCEEEE-EeCceE
Q 047171 487 ESERIVQ-EALDQA-S-QGRTMIIIAHRLSTIRKADLIGV-LQSGRV 529 (1224)
Q Consensus 487 ~~~~~i~-~~l~~~-~-~~~t~i~i~H~l~~~~~ad~i~v-l~~G~i 529 (1224)
.....+. ..++.+ . .|.|+|++||+++....||+.-- +.++++
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 8877665 555554 2 58999999999988776776431 445554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=147.43 Aligned_cols=146 Identities=16% Similarity=0.259 Sum_probs=92.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc--ccCC-----CCceEEECCccCCC-CCHHHHhcceEEEecCCCCCcccHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIER--FYDP-----QSGSVMVDERNIKS-YNLRKLRSCIALVSQEPTLFAGTIRQN 1073 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p-----~~G~I~idG~di~~-~~~~~lR~~i~~V~Qdp~LF~gTIreN 1073 (1224)
.+++|+.++|+||+|||||||++.|++ ..+| ..|.+++++.+... -.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 57889999876311 1133455567776654 5566
Q ss_pred HccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCHH-
Q 047171 1074 IVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDSA- 1150 (1224)
Q Consensus 1074 l~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~~- 1150 (1224)
+.+..+ .+.++..+.+ .-+++++ .+|+++++||||+.+|.+
T Consensus 93 ~~~~~~-~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 655432 2323322221 1111122 589999999999999986
Q ss_pred ------HHH-----HHHHHHHHhc--CCCeEEEEccCchhh-------------------h-hcCEEEEEeCC
Q 047171 1151 ------SEN-----LVQEALEKMM--VGRTCVVVAHRLSTI-------------------Q-KADNIVVIKNG 1190 (1224)
Q Consensus 1151 ------te~-----~I~~~l~~~~--~~~TvI~IaHrl~ti-------------------~-~aD~I~vl~~G 1190 (1224)
+++ .+.+.|.+.. .++|||+++|-.... . .||++++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 422 2333343333 389999999965432 2 48999999865
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-13 Score=149.09 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHh-cCCCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENIL-IGKPGAS 419 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~-~g~~~~~ 419 (1224)
+.+..++|+||||||||||++.+++... .|.+. .|.+... +..+.|+..+... ..+.+++. +|. +..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~~~ 95 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-HLS 95 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-TSC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-hcC
Confidence 4577999999999999999999998654 56653 3443311 2357777665432 22322221 221 112
Q ss_pred HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---HHHHH
Q 047171 420 METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS--ALDAESE---RIVQE 494 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts--~lD~~~~---~~i~~ 494 (1224)
..+. .+.++.+ ++....+.....||+||+|++ |+++.+|+++|+||||+ ++|.... ..+.+
T Consensus 96 ~~~~---------~~~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~ 161 (279)
T 1nlf_A 96 AEER---------QAVADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG 161 (279)
T ss_dssp HHHH---------HHHHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred hhhh---------hhccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH
Confidence 2211 1223333 344445667889999998875 68889999999999999 8997543 56667
Q ss_pred HHHHHc--CCCeEEEEeCCcchh
Q 047171 495 ALDQAS--QGRTMIIIAHRLSTI 515 (1224)
Q Consensus 495 ~l~~~~--~~~t~i~i~H~l~~~ 515 (1224)
.|..+. .|+|+|+++|.....
T Consensus 162 ~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 162 RMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHcCCEEEEEecCCCcc
Confidence 776653 489999999987654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-13 Score=172.63 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=99.9
Q ss_pred cEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 327 EIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
...++|++|. +++.+++|+|||||||||++++++|...+ ..|. .+.. -+..++++.| +|..
T Consensus 595 ~~vlndisl~----~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~ 656 (800)
T 1wb9_A 595 PFIANPLNLS----PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTR 656 (800)
T ss_dssp CCCCEEEEEC----SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEE
T ss_pred ceeeeccccc----CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhh
Confidence 4567889987 34679999999999999999999997432 2221 1111 1235666665 4432
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
++.||+..+ ..++|+|+++ ++.+...+.+|+++|||||++++
T Consensus 657 ~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 657 VGAADDLASG------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp EC-----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCS
T ss_pred CCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCC
Confidence 455554221 1235667665 44444568999999999999999
Q ss_pred CHHHHHH-HHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEee
Q 047171 485 DAESERI-VQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIES 532 (1224)
Q Consensus 485 D~~~~~~-i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~ 532 (1224)
|+..... ..+.++.+. .|.|+|++||+.+....||++..+++|++...
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 9865444 355666553 38999999999988777998888888887653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-13 Score=156.93 Aligned_cols=156 Identities=23% Similarity=0.296 Sum_probs=104.6
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHH--HhcceEEEecCCCCC-ccc
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRK--LRSCIALVSQEPTLF-AGT 1069 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~--lR~~i~~V~Qdp~LF-~gT 1069 (1224)
+++||++++|++++|||+||||||||++.|.|++.|.+|+|.++|.|+.... +.. .|++++||+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999988875431 223 478899999998765 568
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCC--CCCChHHHHHHHHHHHHcc-CC-CEEEEeccCC
Q 047171 1070 IRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERG--VQLSGGQKQRIALARAVLK-NP-MILLLDEATS 1145 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G--~~LSGGQrQRlaLARAll~-~p-~ILlLDEaTS 1145 (1224)
+++|+.++..... |++ =+||. |... .++-.--+|++.++|++.. .| .+||..+||+
T Consensus 364 V~e~l~~a~~~~~--------------DvV-----LIDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 364 IFDAIQAAKARNI--------------DVL-----IADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHTTC--------------SEE-----EECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHhcCC--------------CEE-----EEeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 9999976521100 000 01111 1100 0111223578889998764 35 3565556888
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1146 ALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1146 aLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+.|.... .+.+.+. -+.|.+++|| ++.
T Consensus 424 Gq~al~~---ak~f~~~-~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 424 GQNAVSQ---AKLFHEA-VGLTGITLTK-LDG 450 (503)
T ss_dssp THHHHHH---HHHHHHH-TCCSEEEEEC-GGG
T ss_pred cHHHHHH---HHHHHhh-cCCCEEEEEc-CCC
Confidence 8655422 2223222 3789999999 444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=138.67 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
+++..++|+||+|||||||++.+++ .+..+.++++..+ ..+.. .+.+.... .....
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~~~~~--~~~~~ 73 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQMAET--RGLNP 73 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHHHHHT--TTCCH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHHHHHh--cCCCh
Confidence 4577999999999999999999999 3333444443321 11111 12211110 01111
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHH--------
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGG--QKQRIAIARALIRD-PKILLLDEATSALDAESE-------- 489 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--q~qriaiARal~~~-~~ililDE~ts~lD~~~~-------- 489 (1224)
++ +...+. + ..+|++ |+|+++.+|+++++ |+++|+||||+.+|+..+
T Consensus 74 ~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~ 131 (220)
T 2cvh_A 74 EE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAEL 131 (220)
T ss_dssp HH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHH
T ss_pred HH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHH
Confidence 11 112221 1 123344 47899999999986 999999999999997432
Q ss_pred HHHHHHHHHHc--CCCeEEEEeCCcc-------------hhhc-cCEEEEEeCc
Q 047171 490 RIVQEALDQAS--QGRTMIIIAHRLS-------------TIRK-ADLIGVLQSG 527 (1224)
Q Consensus 490 ~~i~~~l~~~~--~~~t~i~i~H~l~-------------~~~~-ad~i~vl~~G 527 (1224)
..+.+.|+++. .|.|+|+++|... .+.+ ||.|++|++.
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 23444455543 3889999999865 3444 9999999764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-14 Score=151.10 Aligned_cols=135 Identities=16% Similarity=0.026 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++..++|+|||||||||++++|+|. |+.|.|.++|.++..... .++.++|++|++. .+.++.+|+.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~------ 76 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA------ 76 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH------
Confidence 4568999999999999999999998 788999999977532211 1234688888754 3458888875421
Q ss_pred HHHHHHHHhcHHHHHHhcc--cccccc--ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 047171 422 TVVKAAQAANVHDFIMKLN--DGYETK--VGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~--~g~~t~--~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~ 497 (1224)
.. ..+ .+....++.+. .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+.+.
T Consensus 77 ~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 77 GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 00 000 00000000000 011111 13345679999999999999999999876 58876666655554
Q ss_pred H
Q 047171 498 Q 498 (1224)
Q Consensus 498 ~ 498 (1224)
.
T Consensus 146 ~ 146 (191)
T 1zp6_A 146 D 146 (191)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-14 Score=161.78 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=117.1
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC----HHHHhc
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN----LRKLRS 1054 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----~~~lR~ 1054 (1224)
+.+|++++|. ...+|+++||++++|+.++|+|++|||||||++.|.|++.|++|+|.+.|.|+.... ....|+
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3444556663 235899999999999999999999999999999999999999999999999885433 134578
Q ss_pred ceEEEecCCCCCc----------cc---HHHHHc--------------cCCCCCCHHHHHHHHH-------------HHh
Q 047171 1055 CIALVSQEPTLFA----------GT---IRQNIV--------------YGKEVATEAEIRKAAV-------------LAN 1094 (1224)
Q Consensus 1055 ~i~~V~Qdp~LF~----------gT---IreNl~--------------~~~~~~~deei~~al~-------------~a~ 1094 (1224)
++++++|+|.+|. || ++|.+. .|... ++..+.+.+. ...
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~-~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQ-SETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSS-CHHHHHTTSSEEEEEECSCC------
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCc-chhhHHhhCCEEEEEEcCCCcccHHH
Confidence 8999999998884 22 233220 00000 1111110000 000
Q ss_pred HHHHHHhcccccc-cccCC-CCCCCChHHHHHHHHHHHHcc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1095 AHEFISSTEDGYD-TYCGE-RGVQLSGGQKQRIALARAVLK------NPMILLLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1095 l~~~I~~lp~gld-t~vge-~G~~LSGGQrQRlaLARAll~------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
+...+...|.-+- +.+.. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111121100 11110 123579999999999999998 688886 99999999999999887754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-15 Score=177.50 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=121.6
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc--ccH
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA--GTI 1070 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~--gTI 1070 (1224)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++. +..+++++|++. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 347899999999999999999999999999999999999999999999876322221 356788888776 33 377
Q ss_pred HHHHccC---CC------CCCHHHHHHHHHHHh-------------HHHHHHhc---ccccccccC-------CCCCCCC
Q 047171 1071 RQNIVYG---KE------VATEAEIRKAAVLAN-------------AHEFISST---EDGYDTYCG-------ERGVQLS 1118 (1224)
Q Consensus 1071 reNl~~~---~~------~~~deei~~al~~a~-------------l~~~I~~l---p~gldt~vg-------e~G~~LS 1118 (1224)
++++... +| +.++.|...+++.++ +.+.+..+ |.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776432 12 345556666655443 22333332 222222111 1234579
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEE--EccCchhhhh-cC
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVV--VAHRLSTIQK-AD 1182 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~--IaHrl~ti~~-aD 1182 (1224)
||||||.++|. + | |++||+++.+.+++.+.++. .++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988751 1 7 99999988877777776654 3788875 8999998865 64
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-16 Score=164.28 Aligned_cols=165 Identities=16% Similarity=0.074 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCCCHH
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVATEA 1084 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~~de 1084 (1224)
|+.++|+|||||||||+++.|.+ |.+|.+.+||.++... ...++++|++..+ ..|+++|+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999987 5689999999765432 2467788776332 346777764310
Q ss_pred HHHHHHHHHhHHHHHHhcccccccccCC----CCCCC--ChHHHHHHHHHH------HHccCCCEEEEeccCCCCCHHHH
Q 047171 1085 EIRKAAVLANAHEFISSTEDGYDTYCGE----RGVQL--SGGQKQRIALAR------AVLKNPMILLLDEATSALDSASE 1152 (1224)
Q Consensus 1085 ei~~al~~a~l~~~I~~lp~gldt~vge----~G~~L--SGGQrQRlaLAR------All~~p~ILlLDEaTSaLD~~te 1152 (1224)
..... .+ .+.=++...+. .-..+ |+|++|++.++. +++++|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~-------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQ-------NDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TT-------CEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cC-------CcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 00 00001111000 00124 888888888888 8888888888884 7999877
Q ss_pred HHHHHHHHHhc-CCCeEEEEccC-chhhhh-cCEEEEEeCCEEEEecChhHH
Q 047171 1153 NLVQEALEKMM-VGRTCVVVAHR-LSTIQK-ADNIVVIKNGKVVEQGTQSSL 1201 (1224)
Q Consensus 1153 ~~I~~~l~~~~-~~~TvI~IaHr-l~ti~~-aD~I~vl~~G~Ive~Gt~~eL 1201 (1224)
+. ++.+++.. .+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 77 77777664 35789999999 999876 99998 99999999998766
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-13 Score=138.82 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=71.3
Q ss_pred EEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 982 NVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 982 ~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
|++++|. +..+++++||+|++|++++|+||||||||||+++|.|++ |++|+|.++|.++.+. ...+ + +++|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 4455663 245899999999999999999999999999999999999 9999999999988531 1112 2 7999
Q ss_pred CCCCCcccHHHHHcc
Q 047171 1062 EPTLFAGTIRQNIVY 1076 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~ 1076 (1224)
++.+|.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998888899999853
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.2e-12 Score=145.41 Aligned_cols=75 Identities=33% Similarity=0.391 Sum_probs=67.9
Q ss_pred CCCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEE
Q 047171 451 GVQLSGGQKQRI------AIARALIRD-PKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV 523 (1224)
Q Consensus 451 g~~LSgGq~qri------aiARal~~~-~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~v 523 (1224)
...||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++++|+|||+.+....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 368999999988 668999999 9999999999999999999999999887666899999999986566999999
Q ss_pred Ee
Q 047171 524 LQ 525 (1224)
Q Consensus 524 l~ 525 (1224)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-12 Score=148.19 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=80.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc-ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCCCHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIER-FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVATEAE 1085 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~~dee 1085 (1224)
.+.|+||+|+||||+++++.| ++.|..|.|.++|.+..... .-+..+++++|++++. +.+ ..+ ..+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPS-----DMG--NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHh-----hcC--CcchHH
Confidence 399999999999999999999 89999999999998775432 2377899999998752 111 001 111112
Q ss_pred HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC
Q 047171 1086 IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVG 1165 (1224)
Q Consensus 1086 i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~ 1165 (1224)
+.+.++. +.... +++..+ .||| +..+|+++|||||++ ||.++...+.+.+++..++
T Consensus 109 ~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 3332221 11111 122111 4676 778999999999999 9999999999999987778
Q ss_pred CeEEEEccCchhh
Q 047171 1166 RTCVVVAHRLSTI 1178 (1224)
Q Consensus 1166 ~TvI~IaHrl~ti 1178 (1224)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999997653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=144.96 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=67.2
Q ss_pred CCCChHHHHHH------HHHHHHccC-CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 047171 1115 VQLSGGQKQRI------ALARAVLKN-PMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1115 ~~LSGGQrQRl------aLARAll~~-p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
..|||||+||+ |+|||+..+ |++|||||||++||+.+...+.+.|.+..++++||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 36999999987 678999999 99999999999999999999999998876667999999999865669999999
Q ss_pred e
Q 047171 1188 K 1188 (1224)
Q Consensus 1188 ~ 1188 (1224)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-12 Score=137.09 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCcEEEECCEecCC-CCHHHHhcccEEecCCCCCCcccHHHHHh
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLER--FYDP-----VKGNILLDGHKIKK-LQLKWLRSQMGLVNQEPILFSTSIKENIL 412 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~ 412 (1224)
+++..++|+||||||||||++.|++ ..+| ..|.+++++.+... -....+++++++.+|+ +.+|+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~ 94 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDNVA 94 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHTEE
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhCeE
Confidence 3567999999999999999999999 5555 67889998865211 1122344556666553 456665
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----
Q 047171 413 IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE----- 487 (1224)
Q Consensus 413 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~----- 487 (1224)
+..+ .+.++..+..+ .+.+.+. -.+|+++++|||++.+|++
T Consensus 95 ~~~~-~~~~~~~~~~~--~~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~~~ 140 (243)
T 1n0w_A 95 YARA-FNTDHQTQLLY--QASAMMV-------------------------------ESRYALLIVDSATALYRTDYSGRG 140 (243)
T ss_dssp EEEC-CSHHHHHHHHH--HHHHHHH-------------------------------HSCEEEEEEETSSGGGC-------
T ss_pred EEec-CCHHHHHHHHH--HHHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcCCc
Confidence 5432 22222221111 0111110 1689999999999999986
Q ss_pred --HHH-----HHHHHHHHHc--CCCeEEEEeCCcch-------------------hh-ccCEEEEEeCc
Q 047171 488 --SER-----IVQEALDQAS--QGRTMIIIAHRLST-------------------IR-KADLIGVLQSG 527 (1224)
Q Consensus 488 --~~~-----~i~~~l~~~~--~~~t~i~i~H~l~~-------------------~~-~ad~i~vl~~G 527 (1224)
+++ .+...+.++. .|.|+|+++|.... +. .||.+++|+.|
T Consensus 141 ~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 141 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 2333333322 38999999996543 22 48999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-15 Score=159.54 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=104.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCCCHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMET 422 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~~~~~ 422 (1224)
..++|+|||||||||+++.|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-------- 65 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL-------- 65 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH--------
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH--------
Confidence 3689999999999999999997 6789999998665331 2467787765333 34777776431
Q ss_pred HHHHHHHhcHHHHHHhccccccccccC--------CCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCCH
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQ--------FGVQL--SGGQKQRIAIAR------ALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~--------~g~~L--SgGq~qriaiAR------al~~~~~ililDE~ts~lD~ 486 (1224)
++ .+.. .|.+..+.. .-..+ |+|++|++.++. +++.+|+...+|+ ++|+
T Consensus 66 ----~~-----~~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~ 130 (189)
T 2bdt_A 66 ----TV-----NFLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE 130 (189)
T ss_dssp ----HH-----HHHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred ----HH-----HHHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence 00 0000 011111100 01124 888888888888 8888888888884 7898
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEeCC-cchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 487 ESERIVQEALDQAS-QGRTMIIIAHR-LSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 487 ~~~~~i~~~l~~~~-~~~t~i~i~H~-l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
...+. .+.+.... .+.|+|..+|. ++++.. ||+|+ ++|+++..|+.+-|
T Consensus 131 ~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 131 RCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 77666 66666653 46899999999 999876 99998 99999999987655
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-14 Score=167.91 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=97.0
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC----CHHHHh
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY----NLRKLR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~~~~lR 1053 (1224)
++++|+++.|+ ...+|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++... +...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 44555665553 23478888 5 389999999999999999999999999999999999999887421 112344
Q ss_pred cceEEEe---------cCCCCC--c-----ccHHHHHccCCC--------CC-CHHHHHHHHHHHhHHHHHHhccccccc
Q 047171 1054 SCIALVS---------QEPTLF--A-----GTIRQNIVYGKE--------VA-TEAEIRKAAVLANAHEFISSTEDGYDT 1108 (1224)
Q Consensus 1054 ~~i~~V~---------Qdp~LF--~-----gTIreNl~~~~~--------~~-~deei~~al~~a~l~~~I~~lp~gldt 1108 (1224)
+++++.+ |+|.++ . .|+++|+.++.. .. +..+..+.+...++.++.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5566644 998753 2 488888865311 01 112233333333332221
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 047171 1109 YCGERGVQLSGGQKQRIALARAVLKNPMILL 1139 (1224)
Q Consensus 1109 ~vge~G~~LSGGQrQRlaLARAll~~p~ILl 1139 (1224)
...+|||||+|| |||+++.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 234699999999 9999999999975
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-13 Score=147.14 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh---cccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHccC---
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIE---RFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYG--- 1077 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~--- 1077 (1224)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999999887542 234556777788877654 5888888531
Q ss_pred ---C----CC--CCHHHHHHHHHHHhHHHHHH--hcc-c-ccccccCCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe--
Q 047171 1078 ---K----EV--ATEAEIRKAAVLANAHEFIS--STE-D-GYDTYCGERGVQLSGGQKQRIALARAV-LKNPMILLLD-- 1141 (1224)
Q Consensus 1078 ---~----~~--~~deei~~al~~a~l~~~I~--~lp-~-gldt~vge~G~~LSGGQrQRlaLARAl-l~~p~ILlLD-- 1141 (1224)
. .. .+.++.....+..... .+. ..| + .++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 01 1222211111000000 000 000 0 011111233456898 65 888 9999999999
Q ss_pred --ccCCCCCHHHHHHHHHHHHHhc
Q 047171 1142 --EATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1142 --EaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
|||+++|..+++.+.+.++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.5e-12 Score=141.91 Aligned_cols=166 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH----HHhcc--eEEEecCCCCCc-ccHHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR----KLRSC--IALVSQEPTLFA-GTIRQNI 1074 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~----~lR~~--i~~V~Qdp~LF~-gTIreNl 1074 (1224)
..++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+...... .++++ +.+++|++.++. .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999776643 34444 559999988775 5899998
Q ss_pred ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHH
Q 047171 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154 (1224)
Q Consensus 1075 ~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~ 1154 (1224)
.++.. .+ .+.+ -+||. |.... -..=-++.-.++|++..++++++||.+|. .|... .
T Consensus 205 ~~~~~-------------~~-~d~v-----liDta-G~~~~-~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~--~ 260 (328)
T 3e70_C 205 QHAKA-------------RG-IDVV-----LIDTA-GRSET-NRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE--Q 260 (328)
T ss_dssp HHHHH-------------HT-CSEE-----EEEEC-CSCCT-TTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--H
T ss_pred HHHHh-------------cc-chhh-----HHhhc-cchhH-HHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--H
Confidence 65410 00 0000 02321 11110 01112344459999999999999996665 33221 1
Q ss_pred HHHHHHHhcCCCeEEEEccCchh---------hh-hcCEEEEEeCCEEE
Q 047171 1155 VQEALEKMMVGRTCVVVAHRLST---------IQ-KADNIVVIKNGKVV 1193 (1224)
Q Consensus 1155 I~~~l~~~~~~~TvI~IaHrl~t---------i~-~aD~I~vl~~G~Iv 1193 (1224)
+ +.+.+ ..+.|.|++||--.+ +. ..-.|..+..|+-+
T Consensus 261 ~-~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 A-RQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H-HHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H-HHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1 22222 137899999993322 11 13567778888754
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-11 Score=123.51 Aligned_cols=91 Identities=14% Similarity=0.248 Sum_probs=71.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc--eEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG--SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 666666543221
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te 1152 (1224)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2367899999999998 666558
Q ss_pred HHHHHHHHHhc-CCCe-EEEEccC
Q 047171 1153 NLVQEALEKMM-VGRT-CVVVAHR 1174 (1224)
Q Consensus 1153 ~~I~~~l~~~~-~~~T-vI~IaHr 1174 (1224)
+.+.+.+++.. +++| +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887765 4677 7777775
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-12 Score=145.53 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-CCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCC-cccHHHHHhcCCCCCCHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLER-FYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMET 422 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~ni~~g~~~~~~~~ 422 (1224)
.+.|+||+|+||||+++.++| ++.|+.|.+.++|.++.... ..+..+++++|++++. +.+- .+. ...+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 389999999999999999999 89999999999998765422 2266799999988653 1110 011 11111
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQG 502 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~ 502 (1224)
+.+..+ ++.... +++..+ +||| +..+|+++|+|||++ ||+++...+.+.+++..++
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222211 111111 122111 5676 778999999999999 9999999999999887778
Q ss_pred CeEEEEeCCcchh
Q 047171 503 RTMIIIAHRLSTI 515 (1224)
Q Consensus 503 ~t~i~i~H~l~~~ 515 (1224)
.++|++||+.+.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=144.43 Aligned_cols=147 Identities=16% Similarity=0.259 Sum_probs=95.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHH--HhcccCCCCc-----eEEECCccC-CCCCHHHHhcceEEEecCCCCCcccHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGL--IERFYDPQSG-----SVMVDERNI-KSYNLRKLRSCIALVSQEPTLFAGTIRQN 1073 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~l--L~rl~~p~~G-----~I~idG~di-~~~~~~~lR~~i~~V~Qdp~LF~gTIreN 1073 (1224)
-|++|+.++|+||+|||||||+.. +.+..+++.| .+++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 4566665444 899999763 22223345566777665 57778
Q ss_pred HccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCHHH
Q 047171 1074 IVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1074 l~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~~t 1151 (1224)
+.+..+. +-++..+ .+.-+++++ .+|+++++||||+.+|.+.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 2222221 111122222 4799999999999999764
Q ss_pred H------------HHHHHHHHHhc--CCCeEEEEccCch-------------------hhhh-cCEEEEEeCCE
Q 047171 1152 E------------NLVQEALEKMM--VGRTCVVVAHRLS-------------------TIQK-ADNIVVIKNGK 1191 (1224)
Q Consensus 1152 e------------~~I~~~l~~~~--~~~TvI~IaHrl~-------------------ti~~-aD~I~vl~~G~ 1191 (1224)
. ..+.+.|.++. .++|||+|+|-.. .+.+ +|.++.|+.|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 44555665554 3899999999832 2344 89999998763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.20 E-value=7.6e-12 Score=142.89 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=81.2
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC-CCCceEEEC-CccCCCCCHHHHhcceEEEecCCCCCc-ccHH
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD-PQSGSVMVD-ERNIKSYNLRKLRSCIALVSQEPTLFA-GTIR 1071 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~id-G~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIr 1071 (1224)
-++++++. .+|++++|+||||||||||+++|.|+.. |..|+|.++ |.+.. ...++.++++||++.+++ -|++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4799999999999999999999999999 999999997 76542 235678999999998876 4898
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
++-. ...+.+++.+. ..++...+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8632 23344544322 22332222 44444455667899 999999999975
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.20 E-value=9.7e-12 Score=142.04 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEC-CEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHhcCCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD-PVKGNILLD-GHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGA 418 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~~~~ 418 (1224)
.+++++|+||||||||||+++|+|... |+.|+|.++ |.+.. ...+..+++++|++++++. +++++-. ...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e~~l---~~l 286 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVREFGL---WHL 286 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCC---CCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHHhhh---cCC
Confidence 356999999999999999999999999 999999987 76542 1235679999999988865 8998632 233
Q ss_pred CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 419 SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+.+++.+ .+.++++.+ |+....+....+|| ||+||++||+++
T Consensus 287 ~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 287 EPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred CHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 4444322 223444444 55555677788999 999999999986
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-13 Score=147.72 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=95.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcC----
Q 047171 343 TPTIGLVGSSGSGKSTVISLLE---RFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIG---- 414 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g---- 414 (1224)
...++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.+++ .++.+|+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4589999999999999999999 999999999988775432 124455677788877665 4888988641
Q ss_pred ---------CCCCCHHHHHHHHHHhcHHHHHHhc-ccc------------ccccccCCCCCCChHHHHHHHHHHHh-ccC
Q 047171 415 ---------KPGASMETVVKAAQAANVHDFIMKL-NDG------------YETKVGQFGVQLSGGQKQRIAIARAL-IRD 471 (1224)
Q Consensus 415 ---------~~~~~~~~~~~~~~~~~~~~~i~~l-~~g------------~~t~~~~~g~~LSgGq~qriaiARal-~~~ 471 (1224)
.+ .+.++... +..+ ..+ ++.....+...||| |+ ||+ +.+
T Consensus 103 ~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 103 RGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp TTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSC
T ss_pred CCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCC
Confidence 11 11211111 1111 001 11223445678999 66 888 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHHc
Q 047171 472 PKILLLD----EATSALDAESERIVQEALDQAS 500 (1224)
Q Consensus 472 ~~ililD----E~ts~lD~~~~~~i~~~l~~~~ 500 (1224)
|++++|| |||+++|..++..+.+.+....
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999 9999999999888888887654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-11 Score=141.93 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=101.8
Q ss_pred EEeEEEECCCCCCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-cc
Q 047171 330 FKDVDFSYPTRPDTPT--IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TS 406 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~t 406 (1224)
+++|+|+. ++|.. +|||||||||||||+++|+|+. ++|.++...++...++.++|++|++.++. .|
T Consensus 30 L~~vsl~i---~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSV---SQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSC---C-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEe---cCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccc
Confidence 55566654 34667 9999999999999999999984 44555543333334568999999998874 59
Q ss_pred HHHHHhcCCCCCCHHH----HHHHHHHhcHHHHHHhc-------ccccccc-------ccCCCCCCChHHHHHHHHHHHh
Q 047171 407 IKENILIGKPGASMET----VVKAAQAANVHDFIMKL-------NDGYETK-------VGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 407 i~~ni~~g~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------~~~~g~~LSgGq~qriaiARal 468 (1224)
+.||+.||.. .+.+. +.+..+ ....+++... +..-|+. +-+.+..|+-.+ +.|+++|
T Consensus 99 v~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 99 IVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 9999999864 23221 111111 1223333332 1111221 234455677776 8999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEeC
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQ-AS-QGRTMIIIAH 510 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~i~H 510 (1224)
..+++|+++|+|+..|.+.....+.+.+.+ +. .|.+++.++.
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 999999999999999988766666666665 43 5778887774
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-11 Score=137.14 Aligned_cols=145 Identities=15% Similarity=0.104 Sum_probs=95.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHH----HHhc--ccEEecCCCCCCcc-cHHHHHhcC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLK----WLRS--QMGLVNQEPILFST-SIKENILIG 414 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~r~--~i~~v~Q~~~lf~~-ti~~ni~~g 414 (1224)
++.+++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .+++ .+.+++|++.+++. +++||+.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 4669999999999999999999999999999999999998766532 2334 45599999888765 899998653
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 047171 415 KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494 (1224)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~ 494 (1224)
.. .+. +.+ =+|| .|... .-..=.++.-.++|++..++++++||.+|. .|.... + +
T Consensus 208 ~~-------------~~~-d~v-----liDt-aG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--~-~ 262 (328)
T 3e70_C 208 KA-------------RGI-DVV-----LIDT-AGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--A-R 262 (328)
T ss_dssp HH-------------HTC-SEE-----EEEE-CCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--H-H
T ss_pred Hh-------------ccc-hhh-----HHhh-ccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--H-H
Confidence 10 000 000 0122 11110 011122344458999999999999996665 333221 1 1
Q ss_pred HHHHHcCCCeEEEEeCCc
Q 047171 495 ALDQASQGRTMIIIAHRL 512 (1224)
Q Consensus 495 ~l~~~~~~~t~i~i~H~l 512 (1224)
.+.+ ..+.|.|++||--
T Consensus 263 ~~~~-~~~it~iilTKlD 279 (328)
T 3e70_C 263 QFNE-AVKIDGIILTKLD 279 (328)
T ss_dssp HHHH-HSCCCEEEEECGG
T ss_pred HHHH-hcCCCEEEEeCcC
Confidence 1211 2478999999943
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=141.96 Aligned_cols=145 Identities=23% Similarity=0.364 Sum_probs=95.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HH-H-HhcccEEecCCCCCC-cccHHHHHhcC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LK-W-LRSQMGLVNQEPILF-STSIKENILIG 414 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~-~-~r~~i~~v~Q~~~lf-~~ti~~ni~~g 414 (1224)
.+.+++|||+||||||||++.|+|++.|++|+|.++|.|..... .. + .|++|+||+|++.++ ..++++|+.++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 46699999999999999999999999999999999887764321 11 2 467899999998766 45999999764
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCC--CCCChHHHHHHHHHHHhcc-CC-CEEEEeCCCCCCCHHHHH
Q 047171 415 KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFG--VQLSGGQKQRIAIARALIR-DP-KILLLDEATSALDAESER 490 (1224)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g--~~LSgGq~qriaiARal~~-~~-~ililDE~ts~lD~~~~~ 490 (1224)
... +. +.+ + +|| .|... .+|-.--+||+.++|++.. .| .+|+..+||++.|....
T Consensus 372 ~~~-------------~~-DvV--L---IDT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~- 430 (503)
T 2yhs_A 372 KAR-------------NI-DVL--I---ADT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ- 430 (503)
T ss_dssp HHT-------------TC-SEE--E---ECC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH-
T ss_pred Hhc-------------CC-CEE--E---EeC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH-
Confidence 210 00 000 0 111 11110 1122233588999998764 45 46666668888665432
Q ss_pred HHHHHHHHHcCCCeEEEEeC
Q 047171 491 IVQEALDQASQGRTMIIIAH 510 (1224)
Q Consensus 491 ~i~~~l~~~~~~~t~i~i~H 510 (1224)
.+.+.+ .-+.|.+++||
T Consensus 431 --ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 431 --AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp --HHHHHH-HTCCSEEEEEC
T ss_pred --HHHHHh-hcCCCEEEEEc
Confidence 111221 23789999999
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-11 Score=125.27 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=76.0
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE 1079 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~ 1079 (1224)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|... .++ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence 567888999999999999999999999999876666311 110 111
Q ss_pred CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC-CCCHHHHHHHHHH
Q 047171 1080 VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS-ALDSASENLVQEA 1158 (1224)
Q Consensus 1080 ~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS-aLD~~te~~I~~~ 1158 (1224)
++.+.+.. ....+ . .. -....+.+|++|+||||++ ++|+...+.+.+.
T Consensus 77 -----~~~~~~~~--------~~~~~--------~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLKH--------LMDEG--------K--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHHH--------HHHHT--------C--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHHH--------HhcCc--------h--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 11111110 00000 0 00 1122345999999999996 8999999999999
Q ss_pred HHHhc-CCCeEEEEccCch
Q 047171 1159 LEKMM-VGRTCVVVAHRLS 1176 (1224)
Q Consensus 1159 l~~~~-~~~TvI~IaHrl~ 1176 (1224)
+++.. +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 98765 6899999999864
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-13 Score=146.91 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=70.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh-ccc------------CCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE-RFY------------DPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
..+++||++++|+.++|+|||||||||++++|. |++ +|..|++ +|.+....+...++.. ..+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 998 5555544 4444333333333221 112
Q ss_pred CCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh--HHHHHH-HHHH-HHccCCCE
Q 047171 1062 EPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG--GQKQRI-ALAR-AVLKNPMI 1137 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG--GQrQRl-aLAR-All~~p~I 1137 (1224)
+..++.+++..|+ ++.+. +++.++++. |....+.- .+.| .-++++ .-++ .++..|+.
T Consensus 91 ~~~~~~~~~~~~~-~~~~~---~~i~~~~~~------------~~~vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGVPR---KNLEDNVDK------------GVSTLLVI---DWQGAFKFMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TCEEEEEEETTEE-EEEEC---TTHHHHHHH------------TCEEEEEC---CHHHHHHHHHHSGGGEEEEEEECSCH
T ss_pred Cceehhhhhcccc-CCCCH---HHHHHHHHc------------CCeEEEEc---CHHHHHHHHHhcCCCeEEEEEECCcH
Confidence 2222223333332 22221 223333322 11111100 0011 113333 2222 34667788
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC------CCeEEEEccCchhh-hhcCEEEEEeCCEE
Q 047171 1138 LLLDEATSALDSASENLVQEALEKMMV------GRTCVVVAHRLSTI-QKADNIVVIKNGKV 1192 (1224)
Q Consensus 1138 LlLDEaTSaLD~~te~~I~~~l~~~~~------~~TvI~IaHrl~ti-~~aD~I~vl~~G~I 1192 (1224)
.++||+.++.|..+++.+++.|++... ....+++.|.++.+ +..++++...+++.
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp HHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 889999999999998888877754431 23455555554433 22444443333333
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-13 Score=148.49 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=104.0
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCC-CCC-cccHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP-TLF-AGTIR 1071 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp-~LF-~gTIr 1071 (1224)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++........++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999876 79999999987776777788899999986 333 34677
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC------
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS------ 1145 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS------ 1145 (1224)
||++...+...+.+.. . ..+.. +..+ ..|||||+||..+++|+..+|++| |||..
T Consensus 110 Deid~~~~~r~~~~~~-~-----~~~~~-------~~~l----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-A-----SVRVV-------NQLL----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHH-------HHHH----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch-H-----HHHHH-------HHHH----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 8887643321111100 0 01111 1111 248999999999999999999984 99975
Q ss_pred ------CCCHHHHHHHHHHH
Q 047171 1146 ------ALDSASENLVQEAL 1159 (1224)
Q Consensus 1146 ------aLD~~te~~I~~~l 1159 (1224)
--|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23566666666654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.1e-11 Score=136.86 Aligned_cols=145 Identities=12% Similarity=0.173 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----EEEECCEec-CCCCHHHHhcccEEecCCCCCCcccHHHHHh
Q 047171 341 PDTPTIGLVGSSGSGKSTVISL--LERFYDPVKG-----NILLDGHKI-KKLQLKWLRSQMGLVNQEPILFSTSIKENIL 412 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~l--l~~~~~~~~G-----~i~~~g~~~-~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~ 412 (1224)
+++.+++|+||||||||||++. +.+..+++.| .+++++.+. .......+++++++.+| ++.+|+.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vleni~ 248 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNNVA 248 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHTEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhcEE
Confidence 4577999999999999999994 4577776444 889988763 11122334456776554 6778877
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHHH-
Q 047171 413 IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL--IRDPKILLLDEATSALDAESE- 489 (1224)
Q Consensus 413 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal--~~~~~ililDE~ts~lD~~~~- 489 (1224)
+..+. +.++..+. +.-++.+ -.+|+++++||||+.+|++..
T Consensus 249 ~~~~~-~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 249 YARAY-NADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp EEECC-SHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred EeccC-ChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence 76542 22222111 1111111 147999999999999997533
Q ss_pred -----------HHHHHHHHHHc--CCCeEEEEeCCcc-------------------hhhc-cCEEEEEeCce
Q 047171 490 -----------RIVQEALDQAS--QGRTMIIIAHRLS-------------------TIRK-ADLIGVLQSGR 528 (1224)
Q Consensus 490 -----------~~i~~~l~~~~--~~~t~i~i~H~l~-------------------~~~~-ad~i~vl~~G~ 528 (1224)
..+.+.|.++. .|.|+|+|+|-.. .+.+ +|.+++|++|+
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 34555555543 3899999999822 2344 89999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-11 Score=139.51 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=78.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE---CCccCCCCCHHHHh-cceEEEecCCCCC------cccHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV---DERNIKSYNLRKLR-SCIALVSQEPTLF------AGTIR 1071 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~~~~lR-~~i~~V~Qdp~LF------~gTIr 1071 (1224)
++.+|++++|+||||||||||+++|. +.+|.+|+|.+ +|.++.... ...+ +.+++|+|+|-+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44579999999999999999999999 99999999999 999887643 2223 3799999999652 4578
Q ss_pred HHH--ccC---------C---C-CCCHHHHHHHHHHHhHHH-HHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1072 QNI--VYG---------K---E-VATEAEIRKAAVLANAHE-FISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1072 eNl--~~~---------~---~-~~~deei~~al~~a~l~~-~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
||+ .++ . + ....+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 1 1 112356778887777754 333322 248998888999987
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=116.45 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG--NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~ 419 (1224)
+++.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-----------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-----------------------------------
Confidence 3568999999999999999999999887 57 555554322110
Q ss_pred HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 420 METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+++.+|++|+||||++ +|...++.+.+.+...
T Consensus 79 -----------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~ 110 (149)
T 2kjq_A 79 -----------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRF 110 (149)
T ss_dssp -----------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHH
Confidence 2457899999999998 5554477788888765
Q ss_pred c-CCCe-EEEEeCC
Q 047171 500 S-QGRT-MIIIAHR 511 (1224)
Q Consensus 500 ~-~~~t-~i~i~H~ 511 (1224)
. +|++ +|++||+
T Consensus 111 ~~~g~~~iiits~~ 124 (149)
T 2kjq_A 111 RNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHTCCEEEEEESS
T ss_pred HHcCCcEEEEECCC
Confidence 4 4688 7777775
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-12 Score=148.90 Aligned_cols=120 Identities=22% Similarity=0.206 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC----CHHHHhcccEEec---------CCCCCC--c---
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL----QLKWLRSQMGLVN---------QEPILF--S--- 404 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q~~~lf--~--- 404 (1224)
+..++|+|||||||||++++|+|+++|++|+|.+.|.++... +...+++++++.+ |+|.++ .
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 448999999999999999999999999999999998776321 1122345566655 998653 2
Q ss_pred --ccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 405 --TSIKENILIGKPG---------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 405 --~ti~~ni~~g~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
.|+.+|+.++... .+..+....+.. + |++... ...+|||||+|| |||+++.+|+
T Consensus 247 d~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~---------l--gl~~~~--~~~~LSgg~~QR--LaraL~~~p~ 311 (418)
T 1p9r_A 247 DLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRD---------M--GIEPFL--ISSSLLGVLAQR--LVRTLCPDCK 311 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHH---------H--TCCHHH--HHHHEEEEEEEE--EEEEECTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHH---------c--CCcHHH--HHHHHHHHHHHH--hhhhhcCCCC
Confidence 3888988763210 111122222221 1 222211 346799999999 9999999999
Q ss_pred EEEE
Q 047171 474 ILLL 477 (1224)
Q Consensus 474 ilil 477 (1224)
+..-
T Consensus 312 ~~~~ 315 (418)
T 1p9r_A 312 EPYE 315 (418)
T ss_dssp EEEE
T ss_pred ccCC
Confidence 9763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-12 Score=154.02 Aligned_cols=160 Identities=13% Similarity=0.155 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcC---CC--
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIG---KP-- 416 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g---~~-- 416 (1224)
+..++|+|||||||||++++|+|+++|++|.|.++|.+--..+ -++.++++.|+..... .|..+++... +|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 4479999999999999999999999999999999886522221 1345777877765221 2677776432 22
Q ss_pred ----CCCHHHHHHHHHHhc-------------HHHHHHhcc---cccccccc-------CCCCCCChHHHHHHHHHHHhc
Q 047171 417 ----GASMETVVKAAQAAN-------------VHDFIMKLN---DGYETKVG-------QFGVQLSGGQKQRIAIARALI 469 (1224)
Q Consensus 417 ----~~~~~~~~~~~~~~~-------------~~~~i~~l~---~g~~t~~~-------~~g~~LSgGq~qriaiARal~ 469 (1224)
+.+.+|...+.+.+. +.+.+.++. .|....+. .....+|||||||.++|.
T Consensus 337 iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai--- 413 (511)
T 2oap_1 337 IIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV--- 413 (511)
T ss_dssp EEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE---
T ss_pred EEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE---
Confidence 234444444443332 344444442 23222111 223468999999987752
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEE--EeCCcchhhc
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMII--IAHRLSTIRK 517 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~--i~H~l~~~~~ 517 (1224)
+ | |++||+++.+.+.+.+.++. .++|+++ +||+++.+..
T Consensus 414 -------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 414 -------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp -------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred -------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 1 6 99999987666655555543 4788875 8999998864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-11 Score=141.15 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=93.6
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV 1075 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~ 1075 (1224)
-++++|+++.|+.|+|||++|||||||++.|.+..+ .+.+.+...+ ...+++|+|+.. ...++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 489999999999999999999999999999999743 4555554433 345788887751 1122323221
Q ss_pred cCC-----CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHH
Q 047171 1076 YGK-----EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150 (1224)
Q Consensus 1076 ~~~-----~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~ 1150 (1224)
+.. ......-. +..+.+ +..+ .-+|.. .+...+||+||+||+++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl-~~~era--~~lL----~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFL-RHIART--RVLL----YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHH-HHHTSS--SEEE----EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHH-HHHHHH--Hhhh----EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 00111111 100000 0001 011111 122346999999999999999999999999 899987
Q ss_pred HHHHHHHHHHHhc-CCCeEEEEc
Q 047171 1151 SENLVQEALEKMM-VGRTCVVVA 1172 (1224)
Q Consensus 1151 te~~I~~~l~~~~-~~~TvI~Ia 1172 (1224)
....+.+..+.+. .+.+++.||
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEE
Confidence 6533333333222 366888776
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-11 Score=139.15 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=98.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC----HHHHhcccEEecCCCCCCcc------------
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ----LKWLRSQMGLVNQEPILFST------------ 405 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~~v~Q~~~lf~~------------ 405 (1224)
.+.+++|+|+||||||||++.|+|++.|++|+|.+.|.|+.... ....|.++++++|++.+|..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 46699999999999999999999999999999999999885432 12356789999999988752
Q ss_pred -cHHHHHh-c---CC-------CCC--CHHHHHHHHHH-------------hcHHHHHHhcccccc-ccccC-CCCCCCh
Q 047171 406 -SIKENIL-I---GK-------PGA--SMETVVKAAQA-------------ANVHDFIMKLNDGYE-TKVGQ-FGVQLSG 456 (1224)
Q Consensus 406 -ti~~ni~-~---g~-------~~~--~~~~~~~~~~~-------------~~~~~~i~~l~~g~~-t~~~~-~g~~LSg 456 (1224)
+++|.+. + |. +.. +...+.+.++. ..+.+.+...|.-+- +.+.. ....+|+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHH
Confidence 2333321 0 00 000 11111100000 000000111221110 11111 1245799
Q ss_pred HHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 457 GQKQRIAIARALIR------DPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 457 Gq~qriaiARal~~------~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 99999999999987 688887 9999999888888888664
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-11 Score=133.46 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc---CCCCceEEE--------CCccCCC-CCHHHHhcceEEEecCC------CCCc
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFY---DPQSGSVMV--------DERNIKS-YNLRKLRSCIALVSQEP------TLFA 1067 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~~-~~~~~lR~~i~~V~Qdp------~LF~ 1067 (1224)
+.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999877 678899887 7877653 45677899999999987 4566
Q ss_pred ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccC-CCCCCCChHHHHHHHHHHHHccCCCEEEEeccCC
Q 047171 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCG-ERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1068 gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vg-e~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTS 1145 (1224)
.++.+++. ++++.+++..+..++++.....+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67877763 46788888899999999887777666553 456678887 46677889999999988754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.9e-11 Score=133.13 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEecCCCCHHHHh-cccEEecCCCCCC------cccHHHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL---DGHKIKKLQLKWLR-SQMGLVNQEPILF------STSIKENI 411 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~lf------~~ti~~ni 411 (1224)
.+.+++|+||||||||||+|+|. ..+|++|+|.+ +|+++..... ..+ +.+|||+|+|.+. .-|+ ||+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 35699999999999999999999 99999999999 9988765432 222 3699999999542 3478 888
Q ss_pred --hcCC------------C-CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHH
Q 047171 412 --LIGK------------P-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466 (1224)
Q Consensus 412 --~~g~------------~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiAR 466 (1224)
.|+. + ......+.++++..++.+ .........|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~----------~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC----------ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH----------HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4531 0 011123444444333322 0223334579998899999987
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=121.15 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=100.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 4556677777422 1 678888 99999999999999999999999999999999999888765311110
Q ss_pred EEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCE
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMI 1137 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~I 1137 (1224)
++....+.. |++-... +..-...+-||.+|+++..+++++
T Consensus 144 ---------------------------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 000001111 2221111 112344566899999998899999
Q ss_pred EEEecc-CCCCCHHHHHHHHHHHHHhcCCCeEEEEc
Q 047171 1138 LLLDEA-TSALDSASENLVQEALEKMMVGRTCVVVA 1172 (1224)
Q Consensus 1138 LlLDEa-TSaLD~~te~~I~~~l~~~~~~~TvI~Ia 1172 (1224)
+|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999 99999988888888877666666666554
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-10 Score=129.92 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=69.4
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE---CCccCCCCCHHHHhcceEEEecCCCC------------
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV---DERNIKSYNLRKLRSCIALVSQEPTL------------ 1065 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qdp~L------------ 1065 (1224)
|++.+|+.++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999999 99988765422112469999999953
Q ss_pred ----C-cccHHHHHccCCC---CCCHHHHHHHHHHHhH-HHHHHhccc
Q 047171 1066 ----F-AGTIRQNIVYGKE---VATEAEIRKAAVLANA-HEFISSTED 1104 (1224)
Q Consensus 1066 ----F-~gTIreNl~~~~~---~~~deei~~al~~a~l-~~~I~~lp~ 1104 (1224)
| ..|+ +|+.++.. ......+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 4 3477 88887521 1234578899999988 466665554
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-11 Score=137.00 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=96.8
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEE-------------------eCCcEEEEEcCCCCChHHHHHHHhcccC--CC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKI-------------------EAGKTVALVGQSGSGKSTIIGLIERFYD--PQ 1033 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I-------------------~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~ 1033 (1224)
++.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35699999999993 5899999998 8999999999999999999999999998 99
Q ss_pred CceEEE---CCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccc
Q 047171 1034 SGSVMV---DERNIKSYNLRKLRSCIALVSQEPTLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTY 1109 (1224)
Q Consensus 1034 ~G~I~i---dG~di~~~~~~~lR~~i~~V~Qdp~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~ 1109 (1224)
+|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+... + ..-.+ -...| -++
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~------l------~~~~~-~i~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVSD------L------KSGVP-NVTAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHH------H------TTTCS-CEEEC-CEE--
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHH------H------hCCCC-ceecc-ccc--
Confidence 999999 998742 2456778999 766553 3467777653210 0 00000 00111 122
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 047171 1110 CGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDS 1149 (1224)
Q Consensus 1110 vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~ 1149 (1224)
.+.+ +|+..+.+.+.+++++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 333333355678899999999887763
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-10 Score=127.64 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=80.2
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh---cccCCCCceEE--------ECCccC-CCCCHHHHhcceEEEec
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE---RFYDPQSGSVM--------VDERNI-KSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~~~~~~lR~~i~~V~Q 1061 (1224)
.++++.+ ++|++++|+|||||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 999998 45668889999999996
Q ss_pred CC------CCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCC
Q 047171 1062 EP------TLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGE 1112 (1224)
Q Consensus 1062 dp------~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge 1112 (1224)
++ .+++.++.+||. .+++..++..+..+..+......+...+.+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 54 466778888764 245666666666666665554444444443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=114.32 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=39.0
Q ss_pred ccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcch
Q 047171 469 IRDPKILLLDEATS-ALDAESERIVQEALDQAS-QGRTMIIIAHRLST 514 (1224)
Q Consensus 469 ~~~~~ililDE~ts-~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~ 514 (1224)
+.+|++|+||||++ ++|+.....+.+.+.... +|+++|++||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999996 899999888888887654 68999999998753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-09 Score=121.13 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=91.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCH
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE 1083 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~d 1083 (1224)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 46899999999999999999999999988778 24777888773 3333333321
Q ss_pred HHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1084 AEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1084 eei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
.++.. |++.... .+ ++..+.+++++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 156 -----~~~~~-----------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-----------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-----------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-----------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11111 1111111 12 34457777764 999999999 99999877766665443322
Q ss_pred ---CCCeEEEE--ccCchhhhh-cCEEEEEeCCEEEE
Q 047171 1164 ---VGRTCVVV--AHRLSTIQK-ADNIVVIKNGKVVE 1194 (1224)
Q Consensus 1164 ---~~~TvI~I--aHrl~ti~~-aD~I~vl~~G~Ive 1194 (1224)
.+.+++++ +|....+.. +|++..++.|.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23456666 899877765 77766666677764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.2e-10 Score=130.79 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=55.9
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
.+.++++.. ..+|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455555432 2379999999999 9999999999999999999999999999999999999876543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-09 Score=120.46 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=72.5
Q ss_pred eeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC
Q 047171 999 LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK 1078 (1224)
Q Consensus 999 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~ 1078 (1224)
++++.++|+.++|+|++||||||++..|.+.+.+..|+|.+.+.|+... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3555678999999999999999999999999999889999887765320 011
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH---HHHHHHccCCCEEEEeccCC
Q 047171 1079 EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI---ALARAVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1079 ~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl---aLARAll~~p~ILlLDEaTS 1145 (1224)
+++...++.. |++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1121111111 2221 1 14689999999 99999999999999999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.6e-11 Score=129.52 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=99.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC---CCCCcEEEE--------CCEecCC-CCHHHHhcccEEecCCC------CCCcc
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY---DPVKGNILL--------DGHKIKK-LQLKWLRSQMGLVNQEP------ILFST 405 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf~~ 405 (1224)
.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGE 85 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCe
Confidence 479999999999999999999877 788899887 7877653 45667888999999976 44556
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKV-GQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 406 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
++.+++. .+++..++..+..++++.....+..+.+ .++|.-++|+ .++++++.+++++|+.++.
T Consensus 86 ~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 86 DVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp ECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 7878763 4677788888888888887766665554 3567778887 5677788999999998874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-10 Score=115.82 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=58.4
Q ss_pred EeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 331 ~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
++|+|.. +++++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|++.+|.-|+.||
T Consensus 24 ~~vsl~i---~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~~ltv~e~ 94 (158)
T 1htw_A 24 ILLKLHT---EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLYRLADPEE 94 (158)
T ss_dssp HHHHHCC---SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEEEECTTCSCTTH
T ss_pred hcccccc---CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---CcceeccccccCCcHHH
Confidence 3444443 356799999999999999999999999 9999999999887421 1111 28999998887799999
Q ss_pred Hh-cC
Q 047171 411 IL-IG 414 (1224)
Q Consensus 411 i~-~g 414 (1224)
+. +|
T Consensus 95 l~~~g 99 (158)
T 1htw_A 95 LEFMG 99 (158)
T ss_dssp HHHST
T ss_pred HHHcC
Confidence 84 44
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-11 Score=136.94 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC-CCCcc-cHHHHHhcCCCCCCHHHH
Q 047171 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP-ILFST-SIKENILIGKPGASMETV 423 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~-ti~~ni~~g~~~~~~~~~ 423 (1224)
++|+||+|||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..++. ++.|||....+.....+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~ 124 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc
Confidence 899999999999999999999887 79999999887665556677899999986 34433 677777654321111100
Q ss_pred HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC------------CCCHHHHHH
Q 047171 424 VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS------------ALDAESERI 491 (1224)
Q Consensus 424 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts------------~lD~~~~~~ 491 (1224)
+ .....+.+....|||||+||+.|++|+..+|++| |||+. .-|.+.+..
T Consensus 125 -------~----------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 125 -------G----------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp -------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred -------h----------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 0 0011122223468999999999999999999985 99874 236666666
Q ss_pred HHHHH
Q 047171 492 VQEAL 496 (1224)
Q Consensus 492 i~~~l 496 (1224)
|.+.+
T Consensus 186 il~~~ 190 (274)
T 2x8a_A 186 ILKTI 190 (274)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-09 Score=123.75 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEecCCCCHHHHhcccEEecCCCC----------------CC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL---DGHKIKKLQLKWLRSQMGLVNQEPI----------------LF 403 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~----------------lf 403 (1224)
+++++|+||||||||||+++|.|+.+|++|+|.+ +|+++.........+.+|+|+|+|. +|
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~ 248 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 248 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHH
Confidence 5689999999999999999999999999999999 9998876542111236999999985 45
Q ss_pred cc-cHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhccc
Q 047171 404 ST-SIKENILIGKP---GASMETVVKAAQAANV-HDFIMKLND 441 (1224)
Q Consensus 404 ~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~-~~~i~~l~~ 441 (1224)
+. |+ +|+.|+.. ......+.++++..++ .+...+.|.
T Consensus 249 ~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 249 KEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp TTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred Hhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 54 88 99988532 1223457777777776 355555543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=114.63 Aligned_cols=153 Identities=10% Similarity=0.086 Sum_probs=92.7
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHccCC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGK 1078 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TIreNl~~~~ 1078 (1224)
|+++++|+.++|+||||||||||+++|.|+++ .+.++|.++...+....+..++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57889999999999999999999999999974 688898888776666668889999999987754 4445443211
Q ss_pred C------CCCHHHHHHHHHHH----------hHHHHHHhcccc------------cccccCCCCCCCChHHHHHHHHHHH
Q 047171 1079 E------VATEAEIRKAAVLA----------NAHEFISSTEDG------------YDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1079 ~------~~~deei~~al~~a----------~l~~~I~~lp~g------------ldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
. ....+++.++++.. ++.......|.. +...+.+++..-....++|+.-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 11223444443321 222222222322 1112234454444567788888877
Q ss_pred Hc---cCCCEEEEeccCCCCCHH-HHHHHHHHHHH
Q 047171 1131 VL---KNPMILLLDEATSALDSA-SENLVQEALEK 1161 (1224)
Q Consensus 1131 ll---~~p~ILlLDEaTSaLD~~-te~~I~~~l~~ 1161 (1224)
.. +.++.+|.++ |.+ +.+.+.+.+..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 65 3467777644 332 44555555543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-10 Score=125.92 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE---CCccCCCCCHHHHhcceEEEecCCCCCc-----ccHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV---DERNIKSYNLRKLRSCIALVSQEPTLFA-----GTIRQN 1073 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Qdp~LF~-----gTIreN 1073 (1224)
++.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.+++... ..++..+++|+|.|-++. .|+ ||
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888876532 222333899999997654 578 99
Q ss_pred Hc--cC-----------C----CCCCHHHHHHHHHHHhHHH
Q 047171 1074 IV--YG-----------K----EVATEAEIRKAAVLANAHE 1097 (1224)
Q Consensus 1074 l~--~~-----------~----~~~~deei~~al~~a~l~~ 1097 (1224)
|. |. . .......+.++++..++.+
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 83 21 0 0112345777777776644
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-11 Score=139.58 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=108.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc------------ccCCCCceEEECCccCCCCC-HHHHhcce---EEEecCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIER------------FYDPQSGSVMVDERNIKSYN-LRKLRSCI---ALVSQEPTL 1065 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r------------l~~p~~G~I~idG~di~~~~-~~~lR~~i---~~V~Qdp~L 1065 (1224)
++++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 67899999999885332110 00001222 356666665
Q ss_pred Ccc-cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEec
Q 047171 1066 FAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP--MILLLDE 1142 (1224)
Q Consensus 1066 F~g-TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p--~ILlLDE 1142 (1224)
..+ |..+++ . .+....++.+.. +... +|..-......+||+. +| +|+++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchh
Confidence 532 222222 0 111111111110 0000 0000012223356552 89 9999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEccCchhhhh-cCEEE-EEeCC-EEEEecCh
Q 047171 1143 ATSALDSASENLVQEALEKM-MV-GRTCVVVAHRLSTIQK-ADNIV-VIKNG-KVVEQGTQ 1198 (1224)
Q Consensus 1143 aTSaLD~~te~~I~~~l~~~-~~-~~TvI~IaHrl~ti~~-aD~I~-vl~~G-~Ive~Gt~ 1198 (1224)
|++.+|++..+..++.+++. .+ |+|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999998888888876 54 4554 3999998866 99999 99999 88876754
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=9.1e-09 Score=115.56 Aligned_cols=137 Identities=14% Similarity=0.193 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++.+++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..|++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~-------- 155 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT-------- 155 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH--------
Confidence 3569999999999999999999999998778 14677777773 3233333221
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS- 500 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~- 500 (1224)
.++ .+ |.+-... ..++..+.+|+++ .+|+++|+| |+++|+.....+.+..+-..
T Consensus 156 ----~~~---------~~--gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ----YAE---------LL--QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ----HHT---------TT--TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ----HHH---------hc--CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 111 01 1111111 1234567788875 999999999 99999876665555443332
Q ss_pred --CCCeEEEE--eCCcchhhc-cCEEEEEeCceEEe
Q 047171 501 --QGRTMIII--AHRLSTIRK-ADLIGVLQSGRVIE 531 (1224)
Q Consensus 501 --~~~t~i~i--~H~l~~~~~-ad~i~vl~~G~i~~ 531 (1224)
...+++++ +|..+.+.. +|++..++.|.++-
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345565 898777765 77766666677765
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.5e-11 Score=136.25 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=94.7
Q ss_pred ccceeceeEEEeCC-------cEEEEEcCCCCChHHHHHHHhccc----CCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 993 QMIFKGLTLKIEAG-------KTVALVGQSGSGKSTIIGLIERFY----DPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 993 ~~vL~~isl~I~~G-------e~vaIVG~SGsGKSTL~~lL~rl~----~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
..+++++++.+++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.++..+.....+..|.+|+|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35899999999887 889999999999999999999998 6778888887776643211112567999999
Q ss_pred CCCCCcccHHHHHccCCCCC--C----HHHHHHHHHHHhHHHHHHhcc-cccccccCCCCCCCChHHHHHHHHHHHHccC
Q 047171 1062 EPTLFAGTIRQNIVYGKEVA--T----EAEIRKAAVLANAHEFISSTE-DGYDTYCGERGVQLSGGQKQRIALARAVLKN 1134 (1224)
Q Consensus 1062 dp~LF~gTIreNl~~~~~~~--~----deei~~al~~a~l~~~I~~lp-~gldt~vge~G~~LSGGQrQRlaLARAll~~ 1134 (1224)
.+.++. ++.|++....... + .++-. +. +.. .+| -++.. .......||+|+|||++++
T Consensus 111 ~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~---~l~~~~li~-at~~~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 111 IHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRI---DIQPFTLVG-ATTRSGLLSSPLRSRFGII------ 174 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHHHTTCSEE------
T ss_pred hhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccc---cCCCeEEEE-ecCCcccCCHHHHHhcCce------
Confidence 988775 8888874221110 0 00000 00 011 111 12211 1223347999999998665
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
.+||+.+.+.+.+.|++..
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHH
Confidence 6777777777777776553
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-11 Score=130.70 Aligned_cols=124 Identities=20% Similarity=0.225 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh-cCC------------CCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLE-RFY------------DPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SI 407 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~-~~~------------~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 407 (1224)
++++++|+||||||||||+++|+ |++ +|..|++ +| ++|++|++..|.. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g--------------~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG--------------KDYYFVDREEFLRLCS 89 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT--------------TTBEECCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC--------------CeEEEecHHHhhhhhh
Confidence 46799999999999999999999 998 4444433 33 4455555443332 22
Q ss_pred HHHHh---------cCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCCh--HHHHHH-HHHH-HhccCCCE
Q 047171 408 KENIL---------IGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSG--GQKQRI-AIAR-ALIRDPKI 474 (1224)
Q Consensus 408 ~~ni~---------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg--Gq~qri-aiAR-al~~~~~i 474 (1224)
.+|+. +|.+.. ++.+..+. |....+. ..+.| .-+++. .-++ .++..|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~---~i~~~~~~------------~~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRK---NLEDNVDK------------GVSTLLV---IDWQGAFKFMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TTCEEEEEEETTEEEEEECT---THHHHHHH------------TCEEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCH
T ss_pred cCceehhhhhccccCCCCHH---HHHHHHHc------------CCeEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcH
Confidence 22222 332222 22222211 1111111 00111 113333 2222 34567888
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
.++||++++.|..++..+++.+...
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHHC--------------CHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8899999999988888777777543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-11 Score=133.00 Aligned_cols=138 Identities=18% Similarity=0.206 Sum_probs=97.7
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4456666663 235899999999999 99999999999999999999885 7999999988765555566777888
Q ss_pred EecCCC-CC-cccHHHHHc-cCCCCC-----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1059 VSQEPT-LF-AGTIRQNIV-YGKEVA-----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1059 V~Qdp~-LF-~gTIreNl~-~~~~~~-----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
++|++. .+ .-++.||++ ++.... ..++..+. +..++ ..|||||+||..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888864 33 346677774 221110 01111111 11111 1378999999999999
Q ss_pred HccCCCEEEEeccCC
Q 047171 1131 VLKNPMILLLDEATS 1145 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTS 1145 (1224)
+..+|++ ||++..
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 787753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.9e-09 Score=113.62 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=89.8
Q ss_pred cceece-eEEEeCCcEEEEEcCCCCChHHHHH-HHhcccCCCCceEEECCccCCCCCHHHHh---cceEEEecCCCCCcc
Q 047171 994 MIFKGL-TLKIEAGKTVALVGQSGSGKSTIIG-LIERFYDPQSGSVMVDERNIKSYNLRKLR---SCIALVSQEPTLFAG 1068 (1224)
Q Consensus 994 ~vL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~~~~lR---~~i~~V~Qdp~LF~g 1068 (1224)
+.|+++ .--+++|+.++|+||+||||||++. ++....+...+.+++++.. +...++ +++++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 356666 6679999999999999999999954 5555555444555565532 223322 334555443210
Q ss_pred cHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCC
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSA 1146 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSa 1146 (1224)
.+|+...... . +.+ ...+. .+..+-+. +....+.+..++.++ .+|+++++|++|+-
T Consensus 83 --~~~l~~~~~~-~-~~~-------------~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDAF-T-AGI-------------GKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEECS-T-TTT-------------CC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEecc-h-hhc-------------ccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 0122111000 0 000 00000 00011111 112334444445444 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEccCchh--------h-hhcCEEEEEeC
Q 047171 1147 L--DSASENLVQEALEKMM--VGRTCVVVAHRLST--------I-QKADNIVVIKN 1189 (1224)
Q Consensus 1147 L--D~~te~~I~~~l~~~~--~~~TvI~IaHrl~t--------i-~~aD~I~vl~~ 1189 (1224)
+ |+...+.....+.+.. .++|+|+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5433333333333332 48899999997764 3 45999999963
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.9e-10 Score=131.06 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=93.3
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhc--ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc---c---
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIER--FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG---T--- 1069 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g---T--- 1069 (1224)
.+++++.+|..+.|+|.|||||||+++.|.. ++.++.|++.+.+.|.+...+..+.. -|+++.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4678889999999999999999999999876 67777788888888877654444321 1333210 0
Q ss_pred HHHHHccCCCCCCHHHHH---HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH----------HHHHHHccCCC
Q 047171 1070 IRQNIVYGKEVATEAEIR---KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI----------ALARAVLKNPM 1136 (1224)
Q Consensus 1070 IreNl~~~~~~~~deei~---~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl----------aLARAll~~p~ 1136 (1224)
..+.+... .+|+. +.++..++.++ .+|+..+. ..+||||+|+. ++|+++-..|.
T Consensus 232 a~~~L~~~-----~~EmerR~~ll~~~Gv~~i-----~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRWC-----VNEMERRYKLMSALGVRNL-----AGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHTTCSSH-----HHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHcCCccH-----HHHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 11111100 01111 11111111110 01221111 13678887753 46777788898
Q ss_pred -EEEEeccCCCCCHHHHHHHHHHHHHh----c-CCCeEEEEccCch
Q 047171 1137 -ILLLDEATSALDSASENLVQEALEKM----M-VGRTCVVVAHRLS 1176 (1224)
Q Consensus 1137 -ILlLDEaTSaLD~~te~~I~~~l~~~----~-~~~TvI~IaHrl~ 1176 (1224)
++++||+++-+|... ..+.+.+.++ . .|.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999999988432 2333433322 2 2779999999988
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.3e-10 Score=129.27 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=89.6
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
-+++++... .+..++|||+||||||||++.|++..+ .+.+.+...+ ...+++|.|+.. ..-++.|
T Consensus 147 ~~~i~lelk---~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~D 211 (416)
T 1udx_A 147 KRRLRLELM---LIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLAD 211 (416)
T ss_dssp EEEEEEEEC---CSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEE
T ss_pred EeeeeeEEc---CCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEe
Confidence 467777764 356899999999999999999999843 3444444333 235777777641 1112222
Q ss_pred HHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 410 NILIGKP-----GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 410 ni~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
+..+... ..... ..+..+ .++..+..+ |-. .+...+||+||+||+++||+|..+|.|+++ +.+
T Consensus 212 tpGli~~a~~~~~L~~~-fl~~~e--ra~~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKl 279 (416)
T 1udx_A 212 IPGIIEGASEGKGLGLE-FLRHIA--RTRVLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKV 279 (416)
T ss_dssp CCCCCCCGGGSCCSCHH-HHHHHT--SSSEEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECC
T ss_pred ccccccchhhhhhhhHH-HHHHHH--HHHhhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECC
Confidence 2221100 01111 111110 111111111 111 233457999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEeC
Q 047171 485 DAESERIVQEALDQAS-QGRTMIIIAH 510 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~-~~~t~i~i~H 510 (1224)
|......+.+..+.+. .+.+++.||.
T Consensus 280 Dl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 280 DLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp TTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred ChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 9865533333333332 3667777764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=5.9e-08 Score=111.49 Aligned_cols=143 Identities=17% Similarity=0.314 Sum_probs=84.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce-EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS-VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV 1080 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~ 1080 (1224)
-+++|+.+.|.||+|||||||+..+........|. ++++... ..+. .+.+++++-+|+. .+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l-----------~i~--- 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSL-----------LVS--- 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGC-----------EEE---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHe-----------EEe---
Confidence 58899999999999999999987776554433333 3444321 1111 1111222211111 000
Q ss_pred CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccC--CCEEEEeccCCCC----------C
Q 047171 1081 ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKN--PMILLLDEATSAL----------D 1148 (1224)
Q Consensus 1081 ~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~--p~ILlLDEaTSaL----------D 1148 (1224)
. ..++ .|.+.++++++++ |+++|+||+|+-+ |
T Consensus 120 -------------------------------~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 120 -------------------------------Q---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp -------------------------------C---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred -------------------------------c---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0 0112 2445678888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHhc-----CCCeEEEEccCch----------------hhhh-cCEEEEEeCCEEEEecC
Q 047171 1149 S---ASENLVQEALEKMM-----VGRTCVVVAHRLS----------------TIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1149 ~---~te~~I~~~l~~~~-----~~~TvI~IaHrl~----------------ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
. ...+.+.+.++++. .++|||+++|-.. .+.+ ||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 12223444444431 3899999999543 1444 99999998777655554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-09 Score=116.31 Aligned_cols=91 Identities=24% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE--------ECCEecC-CCCHHHHhcccEEecCC------CCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLE---RFYDPVKGNIL--------LDGHKIK-KLQLKWLRSQMGLVNQE------PILF 403 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~------~~lf 403 (1224)
++.+++|+|||||||||++++|+ |++.|++|.|+ .+|.++. ......+++++++++|+ .+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 46799999999999999999999 99999999999 9999984 45678899999999964 3566
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhc
Q 047171 404 STSIKENILIGKPGASMETVVKAAQAANVHDFIMKL 439 (1224)
Q Consensus 404 ~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l 439 (1224)
..++.+||.. +++..++.....++.+...
T Consensus 106 ~~~v~~~i~~-------~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 106 GEDVSNEIRT-------ETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp TEECTTGGGS-------HHHHHHHHHHTTSHHHHHH
T ss_pred CeehhHHHHH-------HHHHHHHHHhcccHHHHHH
Confidence 6788888742 4555555555555555444
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.7e-11 Score=129.75 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=97.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
.+++++...|. ...+++++++++++| ++|+||+|||||||++++.+... .|.|.++|.++........+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45566666663 235899999999999 99999999999999999999875 799999998876555555667788
Q ss_pred EEecCCC-CC-cccHHHHHc-cCCCCC-----CHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHH
Q 047171 1058 LVSQEPT-LF-AGTIRQNIV-YGKEVA-----TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALAR 1129 (1224)
Q Consensus 1058 ~V~Qdp~-LF-~gTIreNl~-~~~~~~-----~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLAR 1129 (1224)
.++|+.. .+ .-++.||++ ++.... ..++..+. +..++. .|||||+||..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll~---------------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLLV---------------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHHH---------------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHHH---------------HHhCCCCCCCEEEE
Confidence 8888864 33 345667773 321110 11111111 111111 36899999999999
Q ss_pred HHccCCCEEEEeccCC
Q 047171 1130 AVLKNPMILLLDEATS 1145 (1224)
Q Consensus 1130 All~~p~ILlLDEaTS 1145 (1224)
|+..+|++ ||++..
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-08 Score=105.69 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHHHh
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENIL 412 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ni~ 412 (1224)
++++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. ++.+|+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 467999999999999999999999974 588888887766555557789999999987755 5555543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.2e-09 Score=117.57 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEE---CCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD--PVKGNILL---DGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKP 416 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~ 416 (1224)
+.++||+||||||||||+++|.|++. |++|+|.+ ||.+. +. ..++.+|++ |+..++. -++.+|+.+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~- 153 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVS- 153 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHH-
Confidence 45899999999999999999999998 99999999 88764 22 345678999 7765543 37777765321
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 047171 417 GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA 486 (1224)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~ 486 (1224)
.+..|.. .+.......+.+ +|++.+.+.+.+|+++|+|.|....|.
T Consensus 154 ---------------------~l~~~~~-~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 154 ---------------------DLKSGVP-NVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ---------------------HHTTTCS-CEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ---------------------HHhCCCC-ceeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 0111111 000001111111 333333355678999999999987764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-08 Score=127.47 Aligned_cols=132 Identities=22% Similarity=0.213 Sum_probs=95.5
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCC--CCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHc--
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDP--QSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIV-- 1075 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~-- 1075 (1224)
|+++++|++++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987665 68999 8999999999999999999999999988888877874
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH
Q 047171 1076 YGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155 (1224)
Q Consensus 1076 ~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I 1155 (1224)
+|..+.. .++..+++ ..+.-++++| ||.++|..+++.+
T Consensus 82 pG~~~f~-~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDFV-GEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGGH-HHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccchH-HHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHH
Confidence 3321111 12222221 2244577777 8888888777555
Q ss_pred HHHHHHhcCCCeEEEEccCchh
Q 047171 1156 QEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1156 ~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
..+.. .+.++|++.|+++.
T Consensus 120 ~~~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHH---TTCCEEEEEECGGG
T ss_pred HHHHH---ccCCEEEEecCCch
Confidence 44432 26677777777764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-11 Score=138.86 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc------------CCCCCCcEEEECCEecCCCCH-HHHhccc---EEecCCCCCCcc
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLER------------FYDPVKGNILLDGHKIKKLQL-KWLRSQM---GLVNQEPILFST 405 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~lf~~ 405 (1224)
.+..++|||++|+|||||++.|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 456999999999999999999999 567999999998854321100 0001122 356676665543
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCC
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP--KILLLDEATS 482 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~--~ililDE~ts 482 (1224)
|..|++ . +......+.+. . +..+ .+..-......+||+. +| +++++|||++
T Consensus 99 ~s~~e~L-------~-~~fl~~ir~~d--~-il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildeel~ 152 (392)
T 1ni3_A 99 ASTGVGL-------G-NAFLSHVRAVD--A-IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDELL 152 (392)
T ss_dssp CCSSSSS-------C-HHHHHHHTTCS--E-EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHHHH
T ss_pred CcHHHHH-------H-HHHHHHHHHHH--H-HHHH---Hhccccceeeeecccc------------CcchhhhhchhhhH
Confidence 322221 0 11111111110 0 0000 0000022334456653 99 9999999999
Q ss_pred CCCHHHHHHHHHHHHHH-cC-CCeEEEEeCCcchhhc-cCEEE-EEeCc-eEEeecCh
Q 047171 483 ALDAESERIVQEALDQA-SQ-GRTMIIIAHRLSTIRK-ADLIG-VLQSG-RVIESGSH 535 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~-~~-~~t~i~i~H~l~~~~~-ad~i~-vl~~G-~i~~~g~~ 535 (1224)
.+|++..+...+.++.. .+ |.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 153 ~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 153 IKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999988888888776 43 5564 3999998876 99999 99999 88766654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-08 Score=113.03 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMET 422 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~ 422 (1224)
+.+++|+|++||||||++..|++.+.+..|+|.+.+.|... ....++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq------------ 150 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ------------ 150 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH------------
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH------------
Confidence 45899999999999999999999999998999887765421 001111
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCC
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRI---AIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qri---aiARal~~~~~ililDE~ts 482 (1224)
+. .+.+.+ |++. + ..+|||+.|++ +|+||+..+|+++|+|+|..
T Consensus 151 L~---------~~~~~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 LK---------IWGERV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HH---------HHHHHH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HH---------HHHHHc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11 111111 2222 1 24689999999 99999999999999999974
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-09 Score=109.80 Aligned_cols=142 Identities=22% Similarity=0.207 Sum_probs=75.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC-----------CCceEEECCccCCC--CCHHHHhcceEEEecCCCCCcc--cHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDP-----------QSGSVMVDERNIKS--YNLRKLRSCIALVSQEPTLFAG--TIRQ 1072 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--~~~~~lR~~i~~V~Qdp~LF~g--TIre 1072 (1224)
+++|+|++|||||||++.+.+...+ ..|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57899999976531 1111112223333332110000 1111
Q ss_pred HHccCCCCCCHHHHHHHHHHHhHHHHH-HhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH
Q 047171 1073 NIVYGKEVATEAEIRKAAVLANAHEFI-SSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al~~a~l~~~I-~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t 1151 (1224)
+... .+.+++...++. +.+.. ...|- -.++.. ..|..-..+...+||++.++|+++++| ||++|.++
T Consensus 111 ~~~~----~s~~~~~~~~~~--~~~~~~~~~~i---~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH----LTYENVERWLKE--LRDHADSNIVI---MLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH----HHHHTHHHHHHH--HHHHSCTTCEE---EEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH----HHHHHHHHHHHH--HHHhcCCCCcE---EEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1000 000111111110 00000 00010 011111 112211223478899999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 047171 1152 ENLVQEALEK 1161 (1224)
Q Consensus 1152 e~~I~~~l~~ 1161 (1224)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888765
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-09 Score=109.82 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=66.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccC-------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYD-------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g 1068 (1224)
...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 445899999999999999999999999986 67887 799999999999998876 699999999
Q ss_pred cHHHHHccCCCCCCHHHHHHHH
Q 047171 1069 TIRQNIVYGKEVATEAEIRKAA 1090 (1224)
Q Consensus 1069 TIreNl~~~~~~~~deei~~al 1090 (1224)
++.+|. ||.+ .+.+.+++
T Consensus 90 ~~~~n~-YGt~---~~~v~~~l 107 (197)
T 3ney_A 90 SYQGNM-FGTK---FETVHQIH 107 (197)
T ss_dssp EETTEE-EEEE---HHHHHHHH
T ss_pred hhhcee-cccc---hhhHHHHH
Confidence 999994 7753 34455543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.8e-08 Score=107.22 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMET 422 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~ 422 (1224)
+.+++++|++||||||++..|++.+.+..|+|.+.+.|+..-... +.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---------------------~q------------ 144 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---------------------EQ------------ 144 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---------------------HH------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---------------------HH------------
Confidence 458999999999999999999999999999999887765321000 00
Q ss_pred HHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 047171 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA-TSALDAESERIVQEALDQA 499 (1224)
Q Consensus 423 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~-ts~lD~~~~~~i~~~l~~~ 499 (1224)
+...++. . |++-... +..-+..+-+|.+|+++...+++++|+|+| ++++|...-..+.+..+..
T Consensus 145 l~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 145 LRLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 0000110 0 2221111 112344566899999998899999999999 9999988777777666554
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.7e-09 Score=109.71 Aligned_cols=141 Identities=20% Similarity=0.154 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEecCC--CCHHHHhcccEEecCCCCCCcc--cHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDP-----------VKGNILLDGHKIKK--LQLKWLRSQMGLVNQEPILFST--SIKE 409 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~~ 409 (1224)
+++|+|++|||||||++.+.|...+ +.|+|.++|.++.- ++....++..++++|...-... ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 1111112222333321100000 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhc-ccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 047171 410 NILIGKPGASMETVVKAAQAANVHDFIMKL-NDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAE 487 (1224)
Q Consensus 410 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~ 487 (1224)
+... .+.+.+....+ .+... +.... -.++.+ ..|..-..+...+||+++.+|+++++| ||++|.+
T Consensus 111 ~~~~----~s~~~~~~~~~------~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWLK------ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHHH------HHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHHH------HHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1000 00111111000 01110 00000 112222 112222234578899999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 047171 488 SERIVQEALDQ 498 (1224)
Q Consensus 488 ~~~~i~~~l~~ 498 (1224)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88777776654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-09 Score=132.86 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=103.4
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCC-ceEEECCccCCCCCHHHHhcceEEEecCC--------
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS-GSVMVDERNIKSYNLRKLRSCIALVSQEP-------- 1063 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Qdp-------- 1063 (1224)
..+++++++.+++|+.+.|+||+|+||||++++|.++.++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8899988766543 34588888764
Q ss_pred --------------CCC-cccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHH
Q 047171 1064 --------------TLF-AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1064 --------------~LF-~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLA 1128 (1224)
+.| ..++.+|+...+.......+... ......+++.. ++..- .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCc
Confidence 111 12333343322110000000000 00011112211 11111 12235999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEK 1161 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~ 1161 (1224)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 899999999999875
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-09 Score=116.25 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=52.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH-------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL------- 1049 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~------- 1049 (1224)
.|+++|+...|. . ++++.+ +.++|+||||||||||+++|.|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865442 1 566667 8999999999999999999999999999999999998843322
Q ss_pred -HHHhcceEEEecC
Q 047171 1050 -RKLRSCIALVSQE 1062 (1224)
Q Consensus 1050 -~~lR~~i~~V~Qd 1062 (1224)
...+.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2357789999985
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-08 Score=117.16 Aligned_cols=177 Identities=12% Similarity=0.134 Sum_probs=110.2
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eEEECCccCCCCCHHHHhcce-EEEecCCCCCcccHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SVMVDERNIKSYNLRKLRSCI-ALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i-~~V~Qdp~LF~gTIr 1071 (1224)
+.|++++.-+++|+.+.|.|++|+||||++..+++...+..| .+.+-+.+ .+...+++++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 468888888999999999999999999999999887766445 56665543 3445554432 111100 0 0
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCH
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDS 1149 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~ 1149 (1224)
+++.-| ..++++.....+. .+.+...|- .+.+ ...+|++|.+ +.||++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a---~~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMA---MGSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHH---HHHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHH---HHHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 123222 3455554333222 222322221 2222 2468999876 6777776 57999999999997743
Q ss_pred H--------HHHHHHHHHHHhc--CCCeEEEEcc---------C--ch--------hhh-hcCEEEEEeCCEE
Q 047171 1150 A--------SENLVQEALEKMM--VGRTCVVVAH---------R--LS--------TIQ-KADNIVVIKNGKV 1192 (1224)
Q Consensus 1150 ~--------te~~I~~~l~~~~--~~~TvI~IaH---------r--l~--------ti~-~aD~I~vl~~G~I 1192 (1224)
. .-..+.+.|+.+. .+++||+++| . +. .+. .||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 1244555565443 3789999999 1 32 344 4999999986654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-09 Score=117.15 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---CCEecCCCCHHHHhcccEEecCCCCCCc-----ccHHHHHh
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL---DGHKIKKLQLKWLRSQMGLVNQEPILFS-----TSIKENIL 412 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~~ni~ 412 (1224)
++++++|+||||||||||+|.|.|...|..|+|.+ +|+++.... ...+..+|+++|.|-+.. .|+ ||+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 46699999999999999999999999999999999 888775432 222323899999997653 478 9984
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-08 Score=105.57 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=64.6
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccC
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG 1077 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~ 1077 (1224)
++-=++++|+.++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3344778899999999999999999999999875 38999999999876 566654
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEec
Q 047171 1078 KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDE 1142 (1224)
Q Consensus 1078 ~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDE 1142 (1224)
.+...+.++.+++....+.+++..+..+. +- ..++.|.++ ..+++++|+|=
T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~---~~---~~~~~~~~~--------~~~~~~vi~eg 117 (207)
T 2qt1_A 67 KNGFLQYDVLEALNMEKMMSAISCWMESA---RH---SVVSTDQES--------AEEIPILIIEG 117 (207)
T ss_dssp TTSCBCCSSGGGBCHHHHHHHHHHHHHHH---TT---SSCCC-------------CCCCEEEEEC
T ss_pred ccCCChhHHHHHhHHHHHHHHHHHHHhCC---CC---CCcCCCeee--------cCCCCEEEEee
Confidence 33222222233333344445544432221 10 134555554 45677888843
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-08 Score=105.00 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=61.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEE----------ECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVM----------VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 445543 47888877888888764 57888999999999
Q ss_pred HHccCCCCCCHHHHHHHH
Q 047171 1073 NIVYGKEVATEAEIRKAA 1090 (1224)
Q Consensus 1073 Nl~~~~~~~~deei~~al 1090 (1224)
| .+|.+ .+.+.+++
T Consensus 80 n-~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIH 93 (180)
T ss_dssp E-EEEEE---HHHHHHHH
T ss_pred c-ccccc---HHHHHHHH
Confidence 9 45533 44455444
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-09 Score=124.07 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=87.8
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQN 1073 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreN 1073 (1224)
.+|+++|+++++|+.++|+||+|||||||+++|.+.+ +|.+..-+ ... +.++..++++||...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 4899999999999999999999999999999999964 67776511 111 22334588889987642 234
Q ss_pred HccCCC---CC-CHHHHHHHHHHHhHHHHHHh---------cccccc-----cccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1074 IVYGKE---VA-TEAEIRKAAVLANAHEFISS---------TEDGYD-----TYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1074 l~~~~~---~~-~deei~~al~~a~l~~~I~~---------lp~gld-----t~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++.... .. ..+.+. ....+.+.+.. .|+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443221 00 001110 11223333320 000000 0123344568999999999998889999
Q ss_pred CEEE-EeccCC
Q 047171 1136 MILL-LDEATS 1145 (1224)
Q Consensus 1136 ~ILl-LDEaTS 1145 (1224)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-07 Score=104.90 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=49.2
Q ss_pred HHHHHHHhccC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH-----cCCCeEEEEeCCcc-------
Q 047171 461 RIAIARALIRD--PKILLLDEATSAL----------DA---ESERIVQEALDQA-----SQGRTMIIIAHRLS------- 513 (1224)
Q Consensus 461 riaiARal~~~--~~ililDE~ts~l----------D~---~~~~~i~~~l~~~-----~~~~t~i~i~H~l~------- 513 (1224)
-+.+++++.++ |+++++|++++.+ |+ ...+.+.+.+.++ ..|.|+|+++|-..
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 34578888755 9999999999998 32 1222344444433 24899999999543
Q ss_pred ---------hhhc-cCEEEEEeCceEEeecC
Q 047171 514 ---------TIRK-ADLIGVLQSGRVIESGS 534 (1224)
Q Consensus 514 ---------~~~~-ad~i~vl~~G~i~~~g~ 534 (1224)
.+++ ||.++.++.+++...|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1444 99999998887765553
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-09 Score=124.44 Aligned_cols=134 Identities=16% Similarity=0.189 Sum_probs=79.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC----CCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY----DPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~ 419 (1224)
..++|+||+|+|||||+++|+|.+ .+++|.+..++.++..+.....+..|.++.|...++. ++.|++.....+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQ 130 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcc
Confidence 478999999999999999999998 6778887776665532211112457999999887765 78887742110000
Q ss_pred HHHH---HHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 047171 420 METV---VKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496 (1224)
Q Consensus 420 ~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l 496 (1224)
..-+ ....+ .+...+..+ ++.. ...+...||+|+|||++++ ..||+.+...+.+.+
T Consensus 131 ~~i~~~~~~~~~--~i~~~l~~~--~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL 189 (334)
T 1in4_A 131 IDIMIGKGPSAK--SIRIDIQPF--TLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEII 189 (334)
T ss_dssp CCC-----------------CCC--EEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHH
T ss_pred cceeeccCcccc--cccccCCCe--EEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHH
Confidence 0000 00000 011111111 2221 2344568999999998655 567776666666666
Q ss_pred HHH
Q 047171 497 DQA 499 (1224)
Q Consensus 497 ~~~ 499 (1224)
++.
T Consensus 190 ~~~ 192 (334)
T 1in4_A 190 KRA 192 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.5e-08 Score=115.23 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=47.0
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 385 (1224)
++||+|..+ + ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 20 l~~vsl~i~---~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 20 FFARTFDFD---E-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEECC---S-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccceEEEEc---c-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 678999875 3 699999999999999999999999999999999999887654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-08 Score=122.36 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=84.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLER--FYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
.+.++|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|+++. +|.+| .
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd---------~ 229 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTD---------M 229 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCS---------H
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecC---------H
Confidence 45889999999999999999876 5677778888877776653322221 1122221 11111 1
Q ss_pred HHHHHHHHHh-----cHHHHHHhccccccccccC---CCCCCChHHHHHH----------HHHHHhccCCC-EEEEeCCC
Q 047171 421 ETVVKAAQAA-----NVHDFIMKLNDGYETKVGQ---FGVQLSGGQKQRI----------AIARALIRDPK-ILLLDEAT 481 (1224)
Q Consensus 421 ~~~~~~~~~~-----~~~~~i~~l~~g~~t~~~~---~g~~LSgGq~qri----------aiARal~~~~~-ililDE~t 481 (1224)
++..++++.+ .=.+.+... |.....+. ....+||||+||. ++|+++...|. ++++||++
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 1111111100 001222222 22211110 0124788888753 46778888898 89999999
Q ss_pred CCCCHHHHHHHHHHHHH----Hc-CCCeEEEEeCCcc
Q 047171 482 SALDAESERIVQEALDQ----AS-QGRTMIIIAHRLS 513 (1224)
Q Consensus 482 s~lD~~~~~~i~~~l~~----~~-~~~t~i~i~H~l~ 513 (1224)
+.+|... ..+.+.+.. .+ .|.++|++|||.+
T Consensus 308 ~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 308 DLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9888432 333344432 22 2779999999998
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-09 Score=122.03 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCc-ccHHHHH-hcCCCCCC--
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFS-TSIKENI-LIGKPGAS-- 419 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~-~ti~~ni-~~g~~~~~-- 419 (1224)
-++|+||+|||||||+++|++... .|.|.++|.++.+......++.+++++|++. .++ -++.||| .++.....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~ 152 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-----
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccccc
Confidence 389999999999999999999875 7999999887755444445567888888763 333 3666777 34321110
Q ss_pred ---HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 420 ---METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 420 ---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
.++.. +.+..+. ..|||||+||+.+++|+..+|++
T Consensus 153 ~~~~~~~~---------~~~~~ll-----------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 153 GGGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp ---CHHHH---------HHHHHHH-----------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred CCcchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEEEecCCchh
Confidence 01111 1111221 24789999999999999999986
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.3e-08 Score=103.31 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD-------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIK 408 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 408 (1224)
.+..++|+||||||||||++.|.+.++ |..|+ +||.+..-++.+.+++.+ .|+.+++.+++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~ 92 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQ 92 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEET
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhh
Confidence 456899999999999999999999886 77887 799998888888888765 689999999999
Q ss_pred HHHhcCCC
Q 047171 409 ENILIGKP 416 (1224)
Q Consensus 409 ~ni~~g~~ 416 (1224)
+| .||.+
T Consensus 93 ~n-~YGt~ 99 (197)
T 3ney_A 93 GN-MFGTK 99 (197)
T ss_dssp TE-EEEEE
T ss_pred ce-ecccc
Confidence 99 58864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-09 Score=119.80 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=75.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCc-ccHHHHH-hcCCCCCC---
Q 047171 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFS-TSIKENI-LIGKPGAS--- 419 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~-~ti~~ni-~~g~~~~~--- 419 (1224)
++|+||+|||||||+++|++... .|.|.++|.++........++.+++++|+.. .++ -++.||| .++.....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~ 129 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc
Confidence 89999999999999999999875 7999999887754444445567888888753 333 3666676 34321100
Q ss_pred --HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 047171 420 --METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481 (1224)
Q Consensus 420 --~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~t 481 (1224)
.++.. +.+..+. ..|||||+||+.+++|+..+|++ ||++.
T Consensus 130 ~~~~~~~---------~~~~~ll-----------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 130 GGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp --CHHHH---------HHHHHHH-----------HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred ccchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 01111 1111111 24689999999999999999987 56654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-07 Score=102.98 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHhc--cCCCEEEEeCCCCCC--CHHH-HHHHHHHHHHH-cCCCeEEEEeCCcch--------h-hccCEEEEE
Q 047171 460 QRIAIARALI--RDPKILLLDEATSAL--DAES-ERIVQEALDQA-SQGRTMIIIAHRLST--------I-RKADLIGVL 524 (1224)
Q Consensus 460 qriaiARal~--~~~~ililDE~ts~l--D~~~-~~~i~~~l~~~-~~~~t~i~i~H~l~~--------~-~~ad~i~vl 524 (1224)
+....++.++ .+|+++++|++++-+ |+.. .+.+.+..+.+ ..|.|+|+++|.... + ..||.|+.|
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEE
Confidence 3333344443 479999999999887 5433 33333333322 358899999997764 3 348999999
Q ss_pred eC
Q 047171 525 QS 526 (1224)
Q Consensus 525 ~~ 526 (1224)
+.
T Consensus 195 ~~ 196 (247)
T 2dr3_A 195 DL 196 (247)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-07 Score=99.01 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=30.4
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 047171 1125 IALARAVLKNPMILLLDEATSALDSASENLVQEALEKM 1162 (1224)
Q Consensus 1125 laLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~ 1162 (1224)
...||++.++|+++++| ||++|.+....+.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999888877777554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.8e-08 Score=120.57 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEECCEecCCCCHHHHhcccEEecCCC---------------------
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVK-GNILLDGHKIKKLQLKWLRSQMGLVNQEP--------------------- 400 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--------------------- 400 (1224)
+..++|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~ 134 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYREKAKSQESVKSS 134 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHHHHHHHHTCC---
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHHHhhccchhhhhh
Confidence 45899999999999999999999999887 8888887665433 33578887653
Q ss_pred -CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 047171 401 -ILFS-TSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478 (1224)
Q Consensus 401 -~lf~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililD 478 (1224)
+.|. .++.+|+..++.......+... ......+++..+ +. -......+|+|++|++..++....++.+|+||
T Consensus 135 ~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~-~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LD 208 (604)
T 3k1j_A 135 NMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RH-DPFQSGGLGTPAHERVEPGMIHRAHKGVLFID 208 (604)
T ss_dssp --------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CC-CCC----CCCCGGGGEECCHHHHTTTSEEEET
T ss_pred cccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Ee-chhhcCCccccccccccCceeeecCCCEEEEe
Confidence 2221 1334444332211000000000 000111222111 11 11222459999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 047171 479 EATSALDAESERIVQEALDQ 498 (1224)
Q Consensus 479 E~ts~lD~~~~~~i~~~l~~ 498 (1224)
|.-. |++.....+.+.|++
T Consensus 209 Ei~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 209 EIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TGGG-SCHHHHHHHHHHHHH
T ss_pred chhh-CCHHHHHHHHHHHHc
Confidence 9988 798888888777764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=104.78 Aligned_cols=113 Identities=19% Similarity=0.330 Sum_probs=75.9
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNI 1074 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl 1074 (1224)
.++++++++++| +.|+||+|+|||||++++.+..... -+.+++. +.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is~~-----------------------------~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHISGS-----------------------------DFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGG-----------------------------GTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHH-----------------------------HHH
Confidence 577888888888 9999999999999999999843110 0111110 000
Q ss_pred ccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccC----------
Q 047171 1075 VYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEAT---------- 1144 (1224)
Q Consensus 1075 ~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaT---------- 1144 (1224)
. ..+| .|++++|-.+++|....|.||++||+.
T Consensus 87 ~--------------------------------~~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 87 E--------------------------------LFVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp T--------------------------------CCTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred H--------------------------------HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 0 0011 267889999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHh-----cCCCeEEEEccCchhh
Q 047171 1145 SALDSASENLVQEALEKM-----MVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1145 SaLD~~te~~I~~~l~~~-----~~~~TvI~IaHrl~ti 1178 (1224)
++.|.+.++.+.+.+..+ ..+..+|..||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 466777766666666543 1355788889998654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.6e-08 Score=104.91 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=38.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH--------HHHhcccEEecCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL--------KWLRSQMGLVNQE 399 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~--------~~~r~~i~~v~Q~ 399 (1224)
.+++|+||||||||||+++|+|++.|++|+|.++|.++...++ ...+.+++||+|+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 3689999999999999999999999999999999998843322 2245689999984
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-07 Score=96.56 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCC------CcEEEECCEecC----CCC-HHHHhcccEEecCCCC--C--Cc
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY-----DPV------KGNILLDGHKIK----KLQ-LKWLRSQMGLVNQEPI--L--FS 404 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~-----~~~------~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--f~ 404 (1224)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +.+ .+..+.......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 678999997652 222 2222322222233321 1 11
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhc-ccccc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 405 TSIKENILIGKPGASMETVVKAAQAANVHDFIMKL-NDGYE-TKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 405 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~-t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
.+-.. +.+++.... +.+... +.+.. -.++.+- .|..-.......||+++.+|+++++| ||
T Consensus 87 ~~~~~---------s~~~~~~~~------~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKHL---------TYENVERWL------KELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCHH---------HHHTHHHHH------HHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCHH---------HHHHHHHHH------HHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11000 001111100 001110 01110 1122221 12111112345699999999999999 99
Q ss_pred CCCHHHHHHHHHHHHH
Q 047171 483 ALDAESERIVQEALDQ 498 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~ 498 (1224)
|+|.+....+.+.+.+
T Consensus 149 al~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILT 164 (199)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999887777666644
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.5e-08 Score=100.58 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEE----------ECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNIL----------LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
.+..++|+||||||||||+++|.+++++ ..|.|. ++|.+....+.+.+++. +.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 3568999999999999999999999874 445543 35656555666666653 567888888898888
Q ss_pred HhcCCC
Q 047171 411 ILIGKP 416 (1224)
Q Consensus 411 i~~g~~ 416 (1224)
.+|.+
T Consensus 81 -~yg~~ 85 (180)
T 1kgd_A 81 -MYGTK 85 (180)
T ss_dssp -EEEEE
T ss_pred -ccccc
Confidence 56653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-07 Score=102.73 Aligned_cols=143 Identities=15% Similarity=0.251 Sum_probs=83.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC-----------CCCceEEECCccCCCCCHHHHhcceEEEecCCCC----CcccHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD-----------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL----FAGTIRQ 1072 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~L----F~gTIre 1072 (1224)
+|+|||++|||||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999765 67799999997652 22346666665532 22232 2
Q ss_pred HHccCC-----CCCCHHH--HHHHHHHHhHHHHHHhc--ccccccccCCCCCCCChHHHHHHHHH----HHH-ccCCCEE
Q 047171 1073 NIVYGK-----EVATEAE--IRKAAVLANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIALA----RAV-LKNPMIL 1138 (1224)
Q Consensus 1073 Nl~~~~-----~~~~dee--i~~al~~a~l~~~I~~l--p~gldt~vge~G~~LSGGQrQRlaLA----RAl-l~~p~IL 1138 (1224)
.+.-.+ -+.++.. ..+..+ ...+.+..+ ++.---.|+.....+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222111 0112111 111111 111222221 11001122333445788899988877 666 444555
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc
Q 047171 1139 LLDEATSALDSASENLVQEALEKMM 1163 (1224)
Q Consensus 1139 lLDEaTSaLD~~te~~I~~~l~~~~ 1163 (1224)
+|||++|.+.-..+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999998888888887654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.8e-07 Score=95.66 Aligned_cols=71 Identities=23% Similarity=0.206 Sum_probs=53.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceEE----------ECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSVM----------VDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
++|+.++|+|||||||||+++.|.+.++| ..+.+. .+|++...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 456666666777776654 5677777777766
Q ss_pred HHccCC
Q 047171 1073 NIVYGK 1078 (1224)
Q Consensus 1073 Nl~~~~ 1078 (1224)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 6 3553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-07 Score=103.33 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=35.9
Q ss_pred cEEEEEE-EEECCCCCCccceeceeEEEeC---CcEEEEEcCCCCChHHHHHHHhccc
Q 047171 977 FIELKNV-FFSYPSRPDQMIFKGLTLKIEA---GKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 977 ~I~~~~v-sf~Y~~~~~~~vL~~isl~I~~---Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.++++|+ +|+|. .+.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 245699999999999 9999999999999999999999865
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-06 Score=101.82 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC-----------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCC----CcccHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD-----------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPIL----FSTSIK 408 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~ 408 (1224)
..++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.|.|.- |..| .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l 252 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-L 252 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-H
Confidence 3699999999999999999999765 67899999997653 22356777665431 2222 2
Q ss_pred HHHhcCC-----CCCCHHH--HHHHHHHhcHHHHHHhcc-ccc-cccccCCCCCCChHHHHHHHHH----HHh-ccCCCE
Q 047171 409 ENILIGK-----PGASMET--VVKAAQAANVHDFIMKLN-DGY-ETKVGQFGVQLSGGQKQRIAIA----RAL-IRDPKI 474 (1224)
Q Consensus 409 ~ni~~g~-----~~~~~~~--~~~~~~~~~~~~~i~~l~-~g~-~t~~~~~g~~LSgGq~qriaiA----Ral-~~~~~i 474 (1224)
+.+.-.. -+.+... ..+.. ....+.+..+. .+. --.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~--~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETL--QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHH--HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHH--HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 2222110 0111111 11111 11223333331 111 1234666677898999998887 666 445554
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+|+||+|.+.-..+.+.|.+.
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHH
Confidence 899999998877777776553
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8e-08 Score=101.72 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=46.2
Q ss_pred ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE--EECCccCC
Q 047171 993 QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV--MVDERNIK 1045 (1224)
Q Consensus 993 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I--~idG~di~ 1045 (1224)
..+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 346788889999999999999999999999999999987 78988 99987664
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=102.48 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=99.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEECCEecCCCCHHHHhccc-EEecCCCCCCcccHHHHHhcCCCC
Q 047171 340 RPDTPTIGLVGSSGSGKSTVISLLERFYDPVKG-NILLDGHKIKKLQLKWLRSQM-GLVNQEPILFSTSIKENILIGKPG 417 (1224)
Q Consensus 340 ~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~~ni~~g~~~ 417 (1224)
-+++..+.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +....- . .+.+.-|.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~~~l~~g~-- 267 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-AQNLRTGK-- 267 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-HHHHHTSC--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-HHHHhcCC--
Confidence 346779999999999999999999887766545 5555332 23444444332 111110 0 12233332
Q ss_pred CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH--------
Q 047171 418 ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI--RDPKILLLDEATSALDAE-------- 487 (1224)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~--~~~~ililDE~ts~lD~~-------- 487 (1224)
.+.++..+..+. .+.+...| -.+.+ ...+|++|.+ +.||.+. .+|+++++|+++.-.+..
T Consensus 268 l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~ 337 (454)
T 2r6a_A 268 LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQ 337 (454)
T ss_dssp CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHH
T ss_pred CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHH
Confidence 344443322221 12232222 12222 3578999986 5677776 589999999999877431
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEeC---------C--cc--------hhhc-cCEEEEEeCceE
Q 047171 488 SERIVQEALDQAS--QGRTMIIIAH---------R--LS--------TIRK-ADLIGVLQSGRV 529 (1224)
Q Consensus 488 ~~~~i~~~l~~~~--~~~t~i~i~H---------~--l~--------~~~~-ad~i~vl~~G~i 529 (1224)
.-..+.+.|+.+. .|.++|+++| + +. .+.+ ||.|++|..++.
T Consensus 338 ~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 338 EVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1234555555442 3889999999 1 32 3444 999999987654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-07 Score=94.76 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=48.8
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc--cCCCCCH----HHHhcceEEEecCCC
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER--NIKSYNL----RKLRSCIALVSQEPT 1064 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~--di~~~~~----~~lR~~i~~V~Qdp~ 1064 (1224)
+++++++.+| .++|+|+||||||||+.+|.++..+..|...-.+. ++-.... ...+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6889999999 99999999999999999999988877765433331 1111110 023467999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.9e-07 Score=94.97 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~ 421 (1224)
++..++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++.+.....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~~~~~~ 73 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKNGFLQY 73 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTTSCBCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccccCCChh
Confidence 455899999999999999999999875 37899999988876 5665544322111
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
++..+.....+.+++..+.++. + . ..++.|.++ ..+++++|+|=|..
T Consensus 74 ~~~~~~~~~~l~~~i~~~l~~~---~--~-~~~~~~~~~--------~~~~~~vi~eg~~~ 120 (207)
T 2qt1_A 74 DVLEALNMEKMMSAISCWMESA---R--H-SVVSTDQES--------AEEIPILIIEGFLL 120 (207)
T ss_dssp SSGGGBCHHHHHHHHHHHHHHH---T--T-SSCCC-------------CCCCEEEEECTTC
T ss_pred HHHHHhHHHHHHHHHHHHHhCC---C--C-CCcCCCeee--------cCCCCEEEEeehHH
Confidence 1222222223333443332211 1 0 134555554 45678889887653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7e-07 Score=101.20 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=57.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH----HHH-----hcceEEE-ecCCC
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL----RKL-----RSCIALV-SQEPT 1064 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~----~~l-----R~~i~~V-~Qdp~ 1064 (1224)
+++++||++++|+.++|+|++|+||||++..|.+.+.+..|+|.+.+.|+..... ..| +.++.++ +|.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3468889999999999999999999999999999999999999999988865432 344 6678999 66543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.3e-07 Score=94.18 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=25.1
Q ss_pred ECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 986 SYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 986 ~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+|++++..++++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466666778999999999999999999999999999999999876
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.1e-07 Score=96.21 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=43.8
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPT 1064 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~ 1064 (1224)
.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 4667899999999999999999999999987 8999999887531 1122335678888753
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.7e-07 Score=111.78 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=94.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~ 419 (1224)
.+..++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..++..||.- .|...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD-TpG~~ 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD-APGYG 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE-CCCSG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe-CCCcc
Confidence 3458999999999999999999987665 77988 78989999999888999999999988877766666642 11110
Q ss_pred HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 047171 420 METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA 499 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~ 499 (1224)
+.. . .... ..-..+..++++| |+.++|+.++..+..+..
T Consensus 86 --~f~--------------------------------~--~~~~--~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-- 124 (665)
T 2dy1_A 86 --DFV--------------------------------G--EIRG--ALEAADAALVAVS-AEAGVQVGTERAWTVAER-- 124 (665)
T ss_dssp --GGH--------------------------------H--HHHH--HHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH--
T ss_pred --chH--------------------------------H--HHHH--HHhhcCcEEEEEc-CCcccchhHHHHHHHHHH--
Confidence 000 0 0011 1112466788888 999999998866654432
Q ss_pred cCCCeEEEEeCCcchh
Q 047171 500 SQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 500 ~~~~t~i~i~H~l~~~ 515 (1224)
.+.++|++.|+++..
T Consensus 125 -~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 125 -LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -TTCCEEEEEECGGGC
T ss_pred -ccCCEEEEecCCchh
Confidence 478899999988764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.6e-07 Score=102.84 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=83.3
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc--ccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER--FYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-.+..+.-.+...-....+..++.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~------- 94 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR------- 94 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT-------
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC-------
Confidence 47899999998 999999999999999999999 777777776544432211000000112222222221
Q ss_pred HHHccCCCCCCHHHHHHHHHHHhHHHHHHh---------------cccc-----ccccc-C--CCCCCCChHHHHHHHHH
Q 047171 1072 QNIVYGKEVATEAEIRKAAVLANAHEFISS---------------TEDG-----YDTYC-G--ERGVQLSGGQKQRIALA 1128 (1224)
Q Consensus 1072 eNl~~~~~~~~deei~~al~~a~l~~~I~~---------------lp~g-----ldt~v-g--e~G~~LSGGQrQRlaLA 1128 (1224)
....+.+++.+....... .+.. -|.+ .||+= . ..+.+.+++++|+..++
T Consensus 95 ------~~~~~~~~v~~~i~~~~~--~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~ 166 (360)
T 3t34_A 95 ------KKFTDFAAVRKEIQDETD--RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV 166 (360)
T ss_dssp ------CCBSCHHHHHHHHHHHHH--HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHH--HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH
Confidence 111122233222211100 0000 0000 12221 0 11234678899999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CC-CeEEEEcc
Q 047171 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VG-RTCVVVAH 1173 (1224)
Q Consensus 1129 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~-~TvI~IaH 1173 (1224)
++.+++|+++||.-..+..|..+. ...+.++... .+ +|++++++
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLATS-DAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHhhcCCeEEEEeecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence 999999998777744444565443 2334444443 24 46666654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-07 Score=114.12 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=54.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eE-EECCccCCC-------CCH---HHHhcceEEEecCCCCCccc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SV-MVDERNIKS-------YNL---RKLRSCIALVSQEPTLFAGT 1069 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I-~idG~di~~-------~~~---~~lR~~i~~V~Qdp~LF~gT 1069 (1224)
.+++|+.++|+|+||||||||+++|.+.+.|.+| +| ++||.++.+ ++. ..+++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999887 78 499977642 222 23456789998873 4
Q ss_pred HHHHHcc
Q 047171 1070 IRQNIVY 1076 (1224)
Q Consensus 1070 IreNl~~ 1076 (1224)
..+|+.+
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 4455544
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-06 Score=93.28 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=40.9
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCC
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTL 1065 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~L 1065 (1224)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +...+... ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 222 11222211 1123347788887643
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-07 Score=113.10 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=95.5
Q ss_pred EEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 979 ELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 979 ~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
+++++...|. ++.+++++++++++| +.|+||+|+|||||++++.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3444444442 234789999999999 99999999999999999999875 7899999998876655566677888
Q ss_pred EecCCC-CCc-ccHHHHHcc-CCCC-----CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1059 VSQEPT-LFA-GTIRQNIVY-GKEV-----ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1059 V~Qdp~-LF~-gTIreNl~~-~~~~-----~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
++|+.. .+. -.+-|+|+. +... ...++..+.+ ..++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence 888874 232 355677743 2211 0122222221 11221 267888888888888
Q ss_pred HccCCCEEEEeccCCC
Q 047171 1131 VLKNPMILLLDEATSA 1146 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSa 1146 (1224)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 8888887 8888753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.7e-06 Score=105.05 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeccCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EccCchhhhh-cC
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLDEATS-ALDSASENLVQEALEKMMVG-RTCVV-VAHRLSTIQK-AD 1182 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLDEaTS-aLD~~te~~I~~~l~~~~~~-~TvI~-IaHrl~ti~~-aD 1182 (1224)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.+...+ +++++ .||..+.+.. ++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3578999999999999999999999999996 89988766666666665544 45555 4798776654 44
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=92.45 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
++++.++|+|+|||||||++++|.+.+ |.+.++|.++... ....+..+|+++|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 356799999999999999999999987 8999999776421 1122235788888653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=8e-06 Score=94.50 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEe-ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEc--cCchh
Q 047171 1115 VQLSGGQKQRIALARAVLKNPMILLLD-EATSALDSASENLVQEALEKMMVGRTCVVVA--HRLST 1177 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAll~~p~ILlLD-EaTSaLD~~te~~I~~~l~~~~~~~TvI~Ia--Hrl~t 1177 (1224)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...++.+|+|. |++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 358999999886 66656677789999 9999999998888877777766678888888 77743
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-05 Score=94.79 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH-----cCCCeEEEEeCCcchhh
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEAT----------SALDAESERIVQEALDQA-----SQGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~t----------s~lD~~~~~~i~~~l~~~-----~~~~t~i~i~H~l~~~~ 516 (1224)
|++++|-.+++|....|.||++||+. ++.|.+.++.+.+.+..+ ..+..+|..||+.+.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 78899999999999999999999993 356666666555555443 23568888999986553
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-06 Score=98.57 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=49.9
Q ss_pred cccEEEEEEEEECCCCCCcccee--------------ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFK--------------GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~--------------~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
++.++|+||+|.||. ++.+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 578999999999985 356888 9999999999999999999999999999999863
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.5e-06 Score=93.58 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=45.0
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-EECCccCCCCCHHHHhcceEEEecCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-MVDERNIKSYNLRKLRSCIALVSQEP 1063 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Qdp 1063 (1224)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+..+ ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhh
Confidence 589999999999999999999999999887777765 677654322 22455677766553
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=3.8e-06 Score=89.07 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh---hhcCEEEEEe
Q 047171 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI---QKADNIVVIK 1188 (1224)
Q Consensus 1117 LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti---~~aD~I~vl~ 1188 (1224)
.+.|+.+|..+++.++.+|+.+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+... ..||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999888754433 3456677666676666543 356788888877654 5599999986
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=5e-06 Score=88.17 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh---hccCEEEEEe
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI---RKADLIGVLQ 525 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~---~~ad~i~vl~ 525 (1224)
.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+.+. +.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3688999999999988888654333 2344565555555555433 356888888887664 4599998885
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.2e-05 Score=89.46 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe--CCc
Q 047171 450 FGVQLSGGQKQRIAIARALIRDPKILLLD-EATSALDAESERIVQEALDQASQGRTMIIIA--HRL 512 (1224)
Q Consensus 450 ~g~~LSgGq~qriaiARal~~~~~ililD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~--H~l 512 (1224)
....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 34568999999887 66666788899999 9999999988766666666554478888888 554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=9.8e-07 Score=95.51 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=49.6
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC------CHHH----HhcceEEEecCCCCCc
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY------NLRK----LRSCIALVSQEPTLFA 1067 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~------~~~~----lR~~i~~V~Qdp~LF~ 1067 (1224)
+.+.++|+.++|+|++||||||++++|.++ .|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 335578999999999999999999999998 78999999876421 1211 2467889999876654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.81 E-value=6.2e-05 Score=88.04 Aligned_cols=161 Identities=18% Similarity=0.186 Sum_probs=94.2
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH-HhcceEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK-LRSCIAL 1058 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~i~~ 1058 (1224)
.++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ ++..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34455556422 1 567777 89999999999999999999999999999999999888876533322 2110
Q ss_pred EecCCCCCcccHHHHHccC--CCCCCHHHHHHHHHHHhHHHHHHhc-ccccccccCCCCCCCC---hHHHHHHHHHHHHc
Q 047171 1059 VSQEPTLFAGTIRQNIVYG--KEVATEAEIRKAAVLANAHEFISST-EDGYDTYCGERGVQLS---GGQKQRIALARAVL 1132 (1224)
Q Consensus 1059 V~Qdp~LF~gTIreNl~~~--~~~~~deei~~al~~a~l~~~I~~l-p~gldt~vge~G~~LS---GGQrQRlaLARAll 1132 (1224)
.-+.|+.+. .+..+..++. .+.+..+ ..++|..+-+.+..++ .-..+...+++++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 001233211 1112333331 1222222 2467765554433333 34567778888886
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEcc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaH 1173 (1224)
-++-+|++| ++++.|.... + +.+.+. -+.+-+++||
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 666677788 5566554422 2 233322 2456677775
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=92.08 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+.|.||+||||||++..+...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999887764
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.6e-06 Score=105.10 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEE-ECCEecCC-------CCH---HHHhcccEEecCCCCCCcccHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG-NIL-LDGHKIKK-------LQL---KWLRSQMGLVNQEPILFSTSIKE 409 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~-~~g~~~~~-------~~~---~~~r~~i~~v~Q~~~lf~~ti~~ 409 (1224)
++..++|+|+||||||||+++|+|.+.|++| +|. +||.++.. ++. ...++.+++|+|+. +..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~~~~ 442 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----TKNR 442 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----HHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----HhcC
Confidence 4568999999999999999999999999987 785 89977642 222 22345688888862 4455
Q ss_pred HHhcC
Q 047171 410 NILIG 414 (1224)
Q Consensus 410 ni~~g 414 (1224)
|+.+.
T Consensus 443 ~ivi~ 447 (552)
T 3cr8_A 443 GIAIC 447 (552)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 65543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=89.74 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4678999999999999999999999998888888766654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.75 E-value=8.3e-07 Score=102.52 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCC---CC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKP---GA 418 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~---~~ 418 (1224)
++..++|+||+|||||||+++|+|.+ +|++...+ . +.+.++..+|+++|...++ .|++..... ..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd~~~~~~~~r~l 235 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FEDVKGTGGESRDL 235 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETTCCCSTTTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHHHHHHHHHHhhc
Confidence 45699999999999999999999864 67775511 1 1122233588899987542 233332221 00
Q ss_pred -CHHHHHHHHHHhcHHHHHHhc-cccccc-------------cccCCCCCCChHHHHHHHHHHHhccCCCEEE-EeCCCC
Q 047171 419 -SMETVVKAAQAANVHDFIMKL-NDGYET-------------KVGQFGVQLSGGQKQRIAIARALIRDPKILL-LDEATS 482 (1224)
Q Consensus 419 -~~~~~~~~~~~~~~~~~i~~l-~~g~~t-------------~~~~~g~~LSgGq~qriaiARal~~~~~ili-lDE~ts 482 (1224)
....+. ....+.+.+... +-..+| .+..+...+++|++||++.+.+++.+|++++ ||+|+.
T Consensus 236 ~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 236 PSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred cccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 000110 111222333200 000111 2445667799999999999988999999998 999987
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.6e-06 Score=89.52 Aligned_cols=70 Identities=21% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEE----------ECCEecCCCCHHHHhcccEEecCCCCCCcccHHHH
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP-VKGNIL----------LDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKEN 410 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~n 410 (1224)
++..++|+|||||||||+++.|++.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++..++.+|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~ 83 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGN 83 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEccc
Confidence 4678999999999999999999999987 333332 234333334444444433 35555666666665
Q ss_pred HhcCC
Q 047171 411 ILIGK 415 (1224)
Q Consensus 411 i~~g~ 415 (1224)
.||.
T Consensus 84 -~yg~ 87 (208)
T 3tau_A 84 -YYGT 87 (208)
T ss_dssp -EEEE
T ss_pred -cCCC
Confidence 4554
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.7e-05 Score=83.78 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
++..++|+|||||||||++++|.+.+.|+.| +.+ +...+... ...+..++|++|++.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 4668999999999999999999999977655 212 22222211 112234778888753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=6.3e-05 Score=95.54 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcC-CCeEEE-EeCCcchhhc
Q 047171 451 GVQLSGGQKQRIAIARALIRDPKILLLDEATS-ALDAESERIVQEALDQASQ-GRTMII-IAHRLSTIRK 517 (1224)
Q Consensus 451 g~~LSgGq~qriaiARal~~~~~ililDE~ts-~lD~~~~~~i~~~l~~~~~-~~t~i~-i~H~l~~~~~ 517 (1224)
..-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+..... .+++++ .||+.+.+..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 35578999999999999999999999999997 8998766555555555544 456666 4888776643
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.9e-05 Score=84.97 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=31.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5777776899999999999999999999988776543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-06 Score=103.31 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=80.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCcc-cHHHHH-hcCCCCC---
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFST-SIKENI-LIGKPGA--- 418 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~~-ti~~ni-~~g~~~~--- 418 (1224)
-+.|+||+|+|||||+++|++... .|.+.++|.++.+......++++..++|+.. ..+. .+.|+| .++....
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~ 143 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 143 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc
Confidence 389999999999999999999875 7899999988866544445566788888864 3333 566777 3443211
Q ss_pred --CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 419 --SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 419 --~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
..++..+. +..++. .|||||+|+..|++|...+|++ ||||.-.
T Consensus 144 ~~~~~e~~~~-----l~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr 188 (499)
T 2dhr_A 144 GGGNDEREQT-----LNQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALLR 188 (499)
T ss_dssp TTSSHHHHHH-----HHHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSS
T ss_pred CCCcHHHHHH-----HHHHHH---------------HhcccccCccEEEEEecCChhh--cCccccc
Confidence 11221111 112221 3678999999999999999988 8998764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.4e-06 Score=94.20 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHH----hcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD--PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENI----LIGKPGA 418 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni----~~g~~~~ 418 (1224)
++||+|||||||||++++|.++++ |++|. ++++++|.+..+....+.. .+|.|+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~ 154 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFLYSNAKLEKQGLMKRKGFPES 154 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGBCCHHHHHHTTCGGGTTSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccccchhhhhhHHHHhhccCccc
Confidence 789999999999999999999987 45554 4556666655443333321 1333322
Q ss_pred -CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 419 -SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 419 -~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+.+.+ .+++..+..|-++. .- -..|-+..+|+.-+...+..|+|+|+|.+..-.|
T Consensus 155 ~D~~~l---------~~~L~~L~~g~~~v-~~--P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~ 210 (321)
T 3tqc_A 155 YDMPSL---------LRVLNAIKSGQRNV-RI--PVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQT 210 (321)
T ss_dssp BCHHHH---------HHHHHHHHTTCSSE-EE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred ccHHHH---------HHHHHhhhcccccc-cc--chhhhhccccccCceeeccCCCEEEEEccccccc
Confidence 22222 23344444443110 00 0122222233332334567899999999987543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.9e-05 Score=88.80 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEECCE
Q 047171 344 PTIGLVGSSGSGKSTVISLLER--FYDPVKGNILLDGH 379 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~ 379 (1224)
+.+++||++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 3899999999999999999999 77888887654443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.62 E-value=1.9e-05 Score=83.40 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=41.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHH
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLR 1050 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~ 1050 (1224)
.++|+.++|+|++||||||+++.|.+.+++..|.|.+.+.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 567899999999999999999999999998899998887776554443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4e-06 Score=88.48 Aligned_cols=40 Identities=38% Similarity=0.586 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE--EECCEecC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI--LLDGHKIK 382 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i--~~~g~~~~ 382 (1224)
++..++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 466999999999999999999999987 77988 88886553
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.9e-05 Score=81.17 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.1
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 1045 (1224)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88999987765
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=4.3e-06 Score=90.37 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCC------CHHH----HhcccEEecCCCCCCc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL------QLKW----LRSQMGLVNQEPILFS 404 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 404 (1224)
+++.+++|+|++||||||++++|.+. .|+|.+.+.+.... .... .++.+++++|++.++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 45679999999999999999999998 78999998875421 1111 2456788888765543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=9.6e-06 Score=85.52 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1043 (1224)
..|+|+|++||||||+.+.|.+. |-..+|.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 47999999999999999999985 777777644
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.55 E-value=6e-05 Score=86.14 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-EECCEecCCCCHHHHhcccEEecCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI-LLDGHKIKKLQLKWLRSQMGLVNQEPI 401 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 401 (1224)
+++..+.|.||+|||||||+..+++...+..|.+ ++++.+.. +. ...+++|+.+|+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLL 117 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhh
Confidence 4567999999999999999999999888877765 66654322 22 24456777666543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00025 Score=82.68 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=33.2
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc----CCCeEEEEccCchh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM----VGRTCVVVAHRLST 1177 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~----~~~TvI~IaHrl~t 1177 (1224)
.+|.+|+|||+... |......+.+.+.+.. .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999886 8877777777765433 36688889998854
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00016 Score=84.68 Aligned_cols=39 Identities=33% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEec
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI 381 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~ 381 (1224)
+.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 348899999999999999999999998888887765553
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.44 E-value=2.4e-05 Score=88.10 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=35.4
Q ss_pred cceeceeEEEeCCc------EEEEEcCCCCChHHHHHHHhcccCC--CCce
Q 047171 994 MIFKGLTLKIEAGK------TVALVGQSGSGKSTIIGLIERFYDP--QSGS 1036 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge------~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~ 1036 (1224)
..|++++..+.+++ .+||+|+|||||||++++|.+++++ .+|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 46777777777776 8999999999999999999999873 4444
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=2.7e-05 Score=80.03 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=37.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc-ccEEecCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS-QMGLVNQE 399 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~ 399 (1224)
++..++|+|++||||||+++.|.+.+ |.+.+++.++.. ...+++ .+|+++|+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 45689999999999999999999875 888998866542 122222 35555554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=4.6e-05 Score=90.52 Aligned_cols=66 Identities=17% Similarity=0.310 Sum_probs=44.8
Q ss_pred CCCEEEEeccCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEccCc-hhhhh-cCEEEE-EeCCEEEEecChh
Q 047171 1134 NPMILLLDEATSALDS-ASENLVQEALEKMM-VGRTCVVVAHRL-STIQK-ADNIVV-IKNGKVVEQGTQS 1199 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~-~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti~~-aD~I~v-l~~G~Ive~Gt~~ 1199 (1224)
+|++|++||+..-.+. .+...+...+++.. .++++|++||+. ..+.. .+++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887775 57777888887754 467888889984 33222 222222 4557777666553
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=8.2e-05 Score=84.71 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+.+..+.|.||+|||||||+..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 45679999999999999999888764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=84.08 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+.|.||+||||||++..+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999888764
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=2.9e-05 Score=80.24 Aligned_cols=41 Identities=37% Similarity=0.484 Sum_probs=34.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCc--eEEECCccCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSG--SVMVDERNIK 1045 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~ 1045 (1224)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 67 6777876554
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00053 Score=79.85 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=32.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCCeEEEEeCCcchh
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS----QGRTMIIIAHRLSTI 515 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~i~H~l~~~ 515 (1224)
.+|.++++||+... |......+.+.+.... .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8777777766664432 366888889987543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.29 E-value=8e-05 Score=84.25 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCH----HHH-----hcccEEe-cCCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQL----KWL-----RSQMGLV-NQEPI 401 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~ 401 (1224)
++.+++++|++||||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 356899999999999999999999999999999998888754321 223 5568888 66543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.28 E-value=5.1e-05 Score=87.13 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=38.1
Q ss_pred cceeceeEEEeCCcE--EEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 994 MIFKGLTLKIEAGKT--VALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
.+++.++..|+.|+. +.+.||+|+||||+++++.+...+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 488999999999998 9999999999999999999987765543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.27 E-value=7e-05 Score=84.28 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE-CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCH
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV-DERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATE 1083 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i-dG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~d 1083 (1224)
++.+|+|+|++|+|||||++.|.|.- +.+ .+.+-. ..++..++++|+..-+. +.| .+| ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~--~iD--TpG---~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAI--YVD--TPG---LHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEE--EES--SSS---CCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEE--EEE--CcC---CCc
Confidence 34489999999999999999999852 222 111111 12345678888764211 100 122 110
Q ss_pred HHHHHHHHHHhHHHHHHhccc---ccccc--cCCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeccCCCCCHHH-HHHH
Q 047171 1084 AEIRKAAVLANAHEFISSTED---GYDTY--CGERGVQLSGGQKQRIALARAVL--KNPMILLLDEATSALDSAS-ENLV 1155 (1224)
Q Consensus 1084 eei~~al~~a~l~~~I~~lp~---gldt~--vge~G~~LSGGQrQRlaLARAll--~~p~ILlLDEaTSaLD~~t-e~~I 1155 (1224)
+-...+. .++...... ..|.. |-+... +|+|++ .+++++. ..|.|+++ +-+|... ...+
T Consensus 69 -~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 69 -EEKRAIN----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp -HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred -cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 1111111 112111111 11221 112223 999986 4566665 67889988 6788765 5556
Q ss_pred HHHHHHhcC--C--CeEEEEccCchhhhh-cCEEE
Q 047171 1156 QEALEKMMV--G--RTCVVVAHRLSTIQK-ADNIV 1185 (1224)
Q Consensus 1156 ~~~l~~~~~--~--~TvI~IaHrl~ti~~-aD~I~ 1185 (1224)
.+.+.++.+ + .++.+.||.-..+.. +|.|.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 666665543 3 244455677666554 45443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.24 E-value=6.8e-05 Score=79.07 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ 385 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 385 (1224)
+.+++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 4589999999999999999999999988999888766654433
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00063 Score=77.06 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCH
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~ 420 (1224)
.++..+.|.|++|+|||||+.-++.......+ .+.|++=| .+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------------ms~ 86 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------------MSA 86 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------------SCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------------CCH
Confidence 45779999999999999999887655432222 23443221 233
Q ss_pred HHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
+++..-.... ...++ ++.... ..||++++||++.|...+.+++++|.|+|...+|
T Consensus 87 ~ql~~Rlls~-----~~~v~--~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 87 EQLALRALSD-----LTSIN--MHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHHHHH-----HHCCC--HHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHHHHHH-----hhCCC--HHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 3332221111 01110 111111 2699999999999999999999999999876544
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.5e-05 Score=78.23 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE--ecCCCCH----HHHhcccEEecCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH--KIKKLQL----KWLRSQMGLVNQEP 400 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~--~~~~~~~----~~~r~~i~~v~Q~~ 400 (1224)
.++|+||||||||||+++|.+...+..|...-.+. ++-.... ...+..|.+++|++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 88999999999999999999988777665422221 1100000 01245789999986
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=71.41 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
+|+|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6999999999999999999987665554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=70.96 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
..++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 38999999999999999999997766655
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00088 Score=78.27 Aligned_cols=142 Identities=23% Similarity=0.226 Sum_probs=81.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH-HhcccEEecCCCCCCcccHHHHHhc--CCCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW-LRSQMGLVNQEPILFSTSIKENILI--GKPGAS 419 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~ti~~ni~~--g~~~~~ 419 (1224)
+.+++++|++||||||++..|++.+.+..|+|.+.+.|+..-...+ ++. .+ -..|+-+ ..+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~-~~------------~~~gv~v~~~~~~~~ 164 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL-LG------------EKVGVPVLEVMDGES 164 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH-HH------------HHHTCCEEECCTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH-hc------------ccCCccEEecCCCCC
Confidence 4589999999999999999999999999999999877765422211 211 00 0011110 011122
Q ss_pred HHHHHHHHHHhcHHHHHHhc-cccccccccCCCCCCC---hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 047171 420 METVVKAAQAANVHDFIMKL-NDGYETKVGQFGVQLS---GGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495 (1224)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~l-~~g~~t~~~~~g~~LS---gGq~qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~ 495 (1224)
..++. .+.+..+ ..+||..+=+-+..++ ....+...+++++..++-+|++| ++++.|.... + +.
T Consensus 165 p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~~--a-~~ 232 (425)
T 2ffh_A 165 PESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALSV--A-RA 232 (425)
T ss_dssp HHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHHH--H-HH
T ss_pred HHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHHH--H-HH
Confidence 33331 1223333 2467765444333332 34677778888887777778888 4556555422 1 22
Q ss_pred HHHHcCCCeEEEEeC
Q 047171 496 LDQASQGRTMIIIAH 510 (1224)
Q Consensus 496 l~~~~~~~t~i~i~H 510 (1224)
+.+ .-+.+-|++|+
T Consensus 233 f~~-~l~i~GVIlTK 246 (425)
T 2ffh_A 233 FDE-KVGVTGLVLTK 246 (425)
T ss_dssp HHH-HTCCCEEEEES
T ss_pred HHh-cCCceEEEEeC
Confidence 222 12457777775
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00042 Score=82.22 Aligned_cols=43 Identities=16% Similarity=0.362 Sum_probs=33.4
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHH-cCCCeEEEEeCCc
Q 047171 470 RDPKILLLDEATSALDA-ESERIVQEALDQA-SQGRTMIIIAHRL 512 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~-~~~~~i~~~l~~~-~~~~t~i~i~H~l 512 (1224)
.+|++|++||+..-.+. .++..+...+... ..|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 5666777777664 4578899999984
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=3.5e-05 Score=81.10 Aligned_cols=31 Identities=48% Similarity=0.686 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 379 (1224)
..++|+|++||||||+.+.|... |-..+|.-
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 37999999999999999999986 66666543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0013 Score=73.53 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHH----------HHHHHHHHHHhcC-----CCeEEEEccCchhh----
Q 047171 1118 SGGQKQRIALARAVLKNPMILLLDEATSALDSAS----------ENLVQEALEKMMV-----GRTCVVVAHRLSTI---- 1178 (1224)
Q Consensus 1118 SGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~t----------e~~I~~~l~~~~~-----~~TvI~IaHrl~ti---- 1178 (1224)
++++++|-.+++|...+|.+|++||+.+-.+... ...+...++.... +..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3577788888888888999999999988765422 2223444443321 23456677876432
Q ss_pred -hhcCEEEEEe
Q 047171 1179 -QKADNIVVIK 1188 (1224)
Q Consensus 1179 -~~aD~I~vl~ 1188 (1224)
+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 3577766553
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0018 Score=70.82 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=30.2
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
.++++++.+++| +.|+||+|+||||+++++.+..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 345555555555 9999999999999999999876432 355665443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00019 Score=85.25 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC------------CCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD------------PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNI 1074 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~g-TIreNl 1074 (1224)
+++|+|++|+|||||++.|.|... |.+|.+.++|.++.-++..-+|+..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 699999999999999999999743 6789999999877666666666767777777666642 344555
Q ss_pred c
Q 047171 1075 V 1075 (1224)
Q Consensus 1075 ~ 1075 (1224)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00052 Score=74.17 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=70.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHccCCCCC
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVA 1081 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~~~~~ 1081 (1224)
+.+|+.+.++|+|||||||++.++........|. ...+.++.|.|.... -++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999887654321111111 134677888886443 35666664221100
Q ss_pred CHHHHHHHHHHHhHHHHHHhccccccccc----CCCC---CCCChHHHHHHHHHHHHccCCCEEEEeccCC-CCCHHHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISSTEDGYDTYC----GERG---VQLSGGQKQRIALARAVLKNPMILLLDEATS-ALDSASEN 1153 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~lp~gldt~v----ge~G---~~LSGGQrQRlaLARAll~~p~ILlLDEaTS-aLD~~te~ 1153 (1224)
- + ...|+.... ...+ .--+.|.-.+. .+.-+++-+++|+||+-. ++|.....
T Consensus 137 ~-----------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P-----------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T-----------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c-----------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0 001111111 0000 01244655444 344689999999999965 57766554
Q ss_pred HHHHHHHHhcCCCeEE
Q 047171 1154 LVQEALEKMMVGRTCV 1169 (1224)
Q Consensus 1154 ~I~~~l~~~~~~~TvI 1169 (1224)
...+.+.....+..+|
T Consensus 197 ~~l~~i~~~~~~~~~i 212 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIV 212 (235)
T ss_dssp HHHHHHHHHCTTSEEE
T ss_pred HHHHHHHhhCCCCeEE
Confidence 3444444444444333
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00031 Score=83.49 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=42.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC------------CCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHHHH
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD------------PVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKEN 410 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~n 410 (1224)
..++|||++|+|||||++.|+|... |.+|.+.++|+++.-++...+++..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 7789999999977655544455555555565544432 33444
Q ss_pred Hh
Q 047171 411 IL 412 (1224)
Q Consensus 411 i~ 412 (1224)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00012 Score=76.90 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=37.6
Q ss_pred EEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc----ccC----CCCceEEECCc
Q 047171 984 FFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER----FYD----PQSGSVMVDER 1042 (1224)
Q Consensus 984 sf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r----l~~----p~~G~I~idG~ 1042 (1224)
+++|++ -.++++++|+..+++ +|+++|++|+|||||++.+.+ .+. ++.+.+.++|.
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 456763 245899999998887 699999999999999999986 222 23456666664
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.07 E-value=8.2e-05 Score=85.30 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=46.2
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCC
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIK 1045 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 1045 (1224)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+..|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888877666553
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.06 E-value=9.9e-05 Score=90.03 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=48.6
Q ss_pred EEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEE
Q 047171 980 LKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALV 1059 (1224)
Q Consensus 980 ~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V 1059 (1224)
++++..+|. +..+++++++++ +|+.+.|+||+|+||||++++|.+...+..|.|.++|.....--....++.++..
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 444544452 234678888888 8999999999999999999999999999999998888543221122233455555
Q ss_pred ecC
Q 047171 1060 SQE 1062 (1224)
Q Consensus 1060 ~Qd 1062 (1224)
+|.
T Consensus 162 ~~~ 164 (543)
T 3m6a_A 162 PGR 164 (543)
T ss_dssp --C
T ss_pred chH
Confidence 554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00029 Score=81.89 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1034 (1224)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00011 Score=89.53 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
+++.++|+||+|+|||||++.|.+...+..|+|.++|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3568999999999999999999999988888887665
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00024 Score=81.51 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
++.+|+|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 467899999999999999999999998889999888877654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0025 Score=71.21 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHc-----CCCeEEEEeCCcchh----
Q 047171 455 SGGQKQRIAIARALIRDPKILLLDEATSALDAES----------ERIVQEALDQAS-----QGRTMIIIAHRLSTI---- 515 (1224)
Q Consensus 455 SgGq~qriaiARal~~~~~ililDE~ts~lD~~~----------~~~i~~~l~~~~-----~~~t~i~i~H~l~~~---- 515 (1224)
++++++|-.++++...+|.+|++||+.+-++... ...+...++... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3677888888888888999999999988765321 122333333322 123466678876543
Q ss_pred -hccCEEEEE
Q 047171 516 -RKADLIGVL 524 (1224)
Q Consensus 516 -~~ad~i~vl 524 (1224)
+++|+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346665554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00016 Score=76.84 Aligned_cols=44 Identities=34% Similarity=0.362 Sum_probs=38.6
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc--eEEECCccC
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG--SVMVDERNI 1044 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di 1044 (1224)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988888 888886543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0012 Score=75.04 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
+..+.|.||+|+|||||++.+.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999987654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00035 Score=75.20 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=32.1
Q ss_pred eeceeEEEe---CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 996 FKGLTLKIE---AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 996 L~~isl~I~---~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
|.++|+.+. +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 556666665 8999999999999999999999999987 6666543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00036 Score=71.30 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56765
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00021 Score=75.39 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCC-CCceE----------EECCccCCCCCHHHHhc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDP-QSGSV----------MVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~~~~~~lR~ 1054 (1224)
...+|..++|+|+|||||||+.+.|...++. ..+.+ .+||.+..-++.+.+++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~ 71 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH
Confidence 3567999999999999999999999887642 11211 23566665566666554
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0019 Score=72.10 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=43.7
Q ss_pred ec-eeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCC
Q 047171 997 KG-LTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSY 1047 (1224)
Q Consensus 997 ~~-isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 1047 (1224)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 45 777776 999999999999999999999999998889999988887553
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0034 Score=71.91 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=32.8
Q ss_pred cceecee--EEEeCCcEEEEEcCCCCChHHHHHHHhcccCCC-CceEEECC
Q 047171 994 MIFKGLT--LKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQ-SGSVMVDE 1041 (1224)
Q Consensus 994 ~vL~~is--l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~idG 1041 (1224)
+.|+.+- =-+++|+.+.|.|++|+|||||+.-+....... ...+++|.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3455552 138999999999999999999997776543322 22344554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00011 Score=75.83 Aligned_cols=39 Identities=41% Similarity=0.508 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEECCEec
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG--NILLDGHKI 381 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~ 381 (1224)
++..++|+|++||||||+++.|.+.+++ .| .|.+||..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 4568999999999999999999998866 56 666666443
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00033 Score=76.24 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=23.9
Q ss_pred cEEEEeE-EEEC-CCC----------CC---CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 327 EIEFKDV-DFSY-PTR----------PD---TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 327 ~i~~~~v-~f~y-~~~----------~~---~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++++|+ +|+| .+. .+ ++.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9999 432 23 6799999999999999999998865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00059 Score=70.92 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=20.9
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+++++|++.++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 899999999999999999987
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00011 Score=78.92 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHh---cccCCCCceE--------EECCccCCCCC-HHHHhcceEEEe------cCCCCCc
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIE---RFYDPQSGSV--------MVDERNIKSYN-LRKLRSCIALVS------QEPTLFA 1067 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I--------~idG~di~~~~-~~~lR~~i~~V~------Qdp~LF~ 1067 (1224)
.-.++|+||+||||||+.+.|. |+.-.+.|.+ .-.|.+..+.. ...+.+.+.+.. |+.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998 4444456665 24566665533 445666666666 3444555
Q ss_pred ccHHHHH
Q 047171 1068 GTIRQNI 1074 (1224)
Q Consensus 1068 gTIreNl 1074 (1224)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 5555554
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00073 Score=69.02 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++|.+|+|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0022 Score=72.85 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHH-cCCCeEEEEeCCc
Q 047171 469 IRDPKILLLDEATSAL-DAESERIVQEALDQA-SQGRTMIIIAHRL 512 (1224)
Q Consensus 469 ~~~~~ililDE~ts~l-D~~~~~~i~~~l~~~-~~~~t~i~i~H~l 512 (1224)
++++++|++||+-.-- |..+...+...+... ..++.+|+++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999986632 346666677777654 3466677777643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=68.08 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
..+.|.||+|+|||||++.+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999987654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00075 Score=76.35 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=30.4
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+.|+++.--+++|+.+.|.|++|+||||++.-++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777776799999999999999999999877764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=69.48 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999998866443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0043 Score=68.85 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++++..+.|.||+|+||||+++.+.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=72.14 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
..+.|+||+|+||||+++.|.+...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4699999999999999999999887666643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00015 Score=77.86 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=44.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE--------ECCEecCCCC-HHHHhcccEEec------CCCCCCcc
Q 047171 344 PTIGLVGSSGSGKSTVISLLE---RFYDPVKGNIL--------LDGHKIKKLQ-LKWLRSQMGLVN------QEPILFST 405 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf~~ 405 (1224)
..++|+||+||||||+.+.|. |+...+.|.++ -+|.++.+.. ...+.+++.+.+ |+.+|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~ 89 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGE 89 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCe
Confidence 479999999999999999998 55445666652 2455554432 344555666666 33445555
Q ss_pred cHHHHHh
Q 047171 406 SIKENIL 412 (1224)
Q Consensus 406 ti~~ni~ 412 (1224)
.|.++|+
T Consensus 90 ~v~~~ir 96 (233)
T 3r20_A 90 DVSSEIR 96 (233)
T ss_dssp ECTTGGG
T ss_pred ehhhhhc
Confidence 6655553
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0028 Score=71.15 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=30.9
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 1000 TLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 1000 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
++.++++..+.|.||+|+||||+++++.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34568899999999999999999999998763 3444444
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00051 Score=79.77 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
+..+.|.||+|+|||||++.+.+...+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4478999999999999999999877554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.003 Score=75.35 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
+.|++....++..+++++++|+......-....+..+.+.+++ .++.+|+|.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 3588888899999999998776655544344445566666654 478899999888765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=75.24 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+.+..+.|.||+|||||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988774
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=67.51 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCc-ccHHHHHhcCCCCCCHH
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFS-TSIKENILIGKPGASME 421 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ni~~g~~~~~~~ 421 (1224)
+..++++|||||||||++.++........|. ...++++.|.|.... .++.+|+.......-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~-- 137 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEEP-- 137 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT--
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcccc--
Confidence 3578999999999999887664321111111 124677777776443 366677643211000
Q ss_pred HHHHHHHHhcHHHHHHhccccccccccC----C---CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHH
Q 047171 422 TVVKAAQAANVHDFIMKLNDGYETKVGQ----F---GVQLSGGQKQRIAIARALIRDPKILLLDEATS-ALDAESERIVQ 493 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~----~---g~~LSgGq~qriaiARal~~~~~ililDE~ts-~lD~~~~~~i~ 493 (1224)
....|+...... . ..=.+.|.-.+.. +.-+++-+++|+||+-. ++|........
T Consensus 138 ----------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 138 ----------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp ----------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred ----------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 000122111110 0 0112456665553 34689999999999976 47766553333
Q ss_pred HHHHHHcCCC
Q 047171 494 EALDQASQGR 503 (1224)
Q Consensus 494 ~~l~~~~~~~ 503 (1224)
+.+.....+.
T Consensus 200 ~~i~~~~~~~ 209 (235)
T 3llm_A 200 RDVVQAYPEV 209 (235)
T ss_dssp HHHHHHCTTS
T ss_pred HHHHhhCCCC
Confidence 3333333333
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00088 Score=68.30 Aligned_cols=26 Identities=38% Similarity=0.425 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
..++|+|++||||||++++|++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=70.34 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0006 Score=78.24 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 382 (1224)
+.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 5589999999999999999999999999998888766654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.48 E-value=0.001 Score=74.75 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE-CCEecCCCCHHHHhcccEEecCCCC--CCcccHHHHHhcCCCCCCHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILL-DGHKIKKLQLKWLRSQMGLVNQEPI--LFSTSIKENILIGKPGASME 421 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~ni~~g~~~~~~~ 421 (1224)
.++|+|++|+|||||++.|.|.- +.+ .+.+-. ..++..|++.++.. .|-+| |....
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~~~- 68 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGLHM- 68 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSCCH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCCCc-
Confidence 79999999999999999999863 111 111100 11234677777643 11121 22210
Q ss_pred HHHHHHHHhcHHHHHHhcccc---ccc--cccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 047171 422 TVVKAAQAANVHDFIMKLNDG---YET--KVGQFGVQLSGGQKQRIAIARALI--RDPKILLLDEATSALDAES-ERIVQ 493 (1224)
Q Consensus 422 ~~~~~~~~~~~~~~i~~l~~g---~~t--~~~~~g~~LSgGq~qriaiARal~--~~~~ililDE~ts~lD~~~-~~~i~ 493 (1224)
+...... .++....... .|- .+-+... +|+|++ .+++++. ..|.|+++ +-+|... ...+.
T Consensus 69 ~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 69 EEKRAIN----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 1111110 0111111111 121 1122223 999987 5566665 67889888 6788765 45565
Q ss_pred HHHHHHcC--C--CeEEEEeCCcchhh
Q 047171 494 EALDQASQ--G--RTMIIIAHRLSTIR 516 (1224)
Q Consensus 494 ~~l~~~~~--~--~t~i~i~H~l~~~~ 516 (1224)
+.+.++.+ + .++.+.+|.-.-+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 66655432 3 24445556554443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00099 Score=71.60 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=32.1
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 376 (1224)
+.+.++++.+.....+..++|.|++||||||+++.|...+.+ .+.+..
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566667776654455779999999999999999999999887 666543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00066 Score=78.00 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=33.4
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+++|+++|| .-.++......+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 5678888888899999876555567777776654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=64.90 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=24.5
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455566655 88999999999999999986
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0007 Score=76.74 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=37.9
Q ss_pred cccccEEEEeEEEECCCCC-------------------------CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 323 YLRGEIEFKDVDFSYPTRP-------------------------DTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 323 ~~~~~i~~~~v~f~y~~~~-------------------------~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..++.+.|+||+|.||... .|++++|+||+|+|||||++.|.++.
T Consensus 129 ~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3467899999999998531 24489999999999999999999975
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00021 Score=75.09 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=37.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc------cCCCCceEEECCc--cCCCCCH--------HHHhcceEEEecCCCCCcccHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF------YDPQSGSVMVDER--NIKSYNL--------RKLRSCIALVSQEPTLFAGTIR 1071 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl------~~p~~G~I~idG~--di~~~~~--------~~lR~~i~~V~Qdp~LF~gTIr 1071 (1224)
.++|+|++||||||+.+.|.+. .+|..|...++.. +-...+. ..++.....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444343222211 1000000 0022333456666777777777
Q ss_pred HHHcc
Q 047171 1072 QNIVY 1076 (1224)
Q Consensus 1072 eNl~~ 1076 (1224)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=68.29 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=23.4
Q ss_pred EEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 328 IEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 328 i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
-..+||+|..+ ++..++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~---~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSN---AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecC---CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678888763 35689999999999999999999876
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00057 Score=72.48 Aligned_cols=39 Identities=38% Similarity=0.325 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEECCEe
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKG--NILLDGHK 380 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~ 380 (1224)
.+..++|+|++||||||+++.|.+.+.|..| .+.++|.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3458999999999999999999999988888 88887543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=74.61 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
.+.+.||+|+||||+++.+++.+.+..+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3899999999999999999998766554
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.012 Score=64.09 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGH 379 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 379 (1224)
.+.|+||+|+||||+++.+.+.+... -+.+++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 58899999999999999999876432 3555543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00075 Score=71.11 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.+..++|+|||||||||+.+.|...++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999988764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0018 Score=69.45 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=33.9
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
.++.+|++||+-. +|.+....+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999876 78888888888886654566778888876544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0018 Score=74.63 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc-----------cCCCCceEEECCc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF-----------YDPQSGSVMVDER 1042 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~idG~ 1042 (1224)
.++.|.+++|||++|+|||||++.|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898888764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0018 Score=66.87 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=26.6
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999876
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.00096 Score=69.06 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-EECCc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-MVDER 1042 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~idG~ 1042 (1224)
..++|..+.|+|++||||||+.+.|.+.+.+..|.+ .+|+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345789999999999999999999999988776765 45543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=57.81 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
.+.-|-|.|++|+|||++++.+......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4556999999999999999999876543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0022 Score=72.68 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
-+++|+.+.|.|++|+||||++.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.00054 Score=79.04 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=36.1
Q ss_pred cccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 975 ~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
.|.|.++|++..|. ...++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46789999988884 235789999876 99999999999999999987665555544333
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0023 Score=68.74 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
...+.|.||+|+||||+++.+......
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999876543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.002 Score=70.44 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=35.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKS 1046 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1046 (1224)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456678999999999999999999998775 3678888866543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0053 Score=69.31 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 047171 454 LSGGQKQRIAIARALIRDPKILLLDEATSA 483 (1224)
Q Consensus 454 LSgGq~qriaiARal~~~~~ililDE~ts~ 483 (1224)
||++++||++.|...+.++++++.|+|...
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 899999999999999999999999998644
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0021 Score=73.65 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcch
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLST 514 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~ 514 (1224)
++.|+++|| ...+++.....+.+.+++...+..+|+++++.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778888888888888776555567777777654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0084 Score=66.47 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999999998865
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0041 Score=62.70 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.032 Score=65.26 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEE
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMV 1039 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1039 (1224)
++..++++|++|+||||++.-|...+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35679999999999999999999887754334443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.013 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
.+.|.||+|+|||++++.|.......
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 46899999999999999998875543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0023 Score=67.16 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
...++|+|++||||||+.+.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998876 5566766443
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.00038 Score=73.07 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998843
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0063 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.011 Score=69.98 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=70.1
Q ss_pred cceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eE-EECCccCCCCCHHHHhcceE----EEecCCCCCc
Q 047171 994 MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SV-MVDERNIKSYNLRKLRSCIA----LVSQEPTLFA 1067 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I-~idG~di~~~~~~~lR~~i~----~V~Qdp~LF~ 1067 (1224)
+-|+.+.--+++|+.+.|.||+|+||||++.-++.-.....| .+ +++. +.+.+.+..++- -++.+. +.+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~-l~~ 262 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR-VRL 262 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-CCG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-HhC
Confidence 357777766999999999999999999999877765543223 23 3322 234444443321 111111 101
Q ss_pred ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeccCC
Q 047171 1068 GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK--NPMILLLDEATS 1145 (1224)
Q Consensus 1068 gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~--~p~ILlLDEaTS 1145 (1224)
...++++.....+. .+.+...|- .+.+ ...+|..+ ..+.+|.+.+ +++++++|..+.
T Consensus 263 -----------g~l~~~~~~~~~~a---~~~l~~~~l----~i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 263 -----------GQLTDRDFSRLVDV---ASRLSEAPI----YIDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp -----------GGCCHHHHHHHHHH---HHHHHTSCE----EEEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGG
T ss_pred -----------CCCCHHHHHHHHHH---HHHHhcCCE----EEEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhh
Confidence 12345553332222 122332221 1211 13466654 4566676663 689999999886
Q ss_pred CCC
Q 047171 1146 ALD 1148 (1224)
Q Consensus 1146 aLD 1148 (1224)
-.+
T Consensus 322 ~~~ 324 (444)
T 2q6t_A 322 MSG 324 (444)
T ss_dssp CBC
T ss_pred cCC
Confidence 554
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0034 Score=64.12 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCC---CceEEECCcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQ---SGSVMVDERN 1043 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~idG~d 1043 (1224)
..++|+|+|||||||+++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999876543 3677777644
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0049 Score=62.75 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+..++|+|++|+|||||++.+.|..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0035 Score=64.53 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+++++|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0021 Score=68.95 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=32.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
.+|.++++||+-. +|......+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999865 68777777777775544566778888876544
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.003 Score=64.53 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCEe
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPV---KGNILLDGHK 380 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~ 380 (1224)
.+.++|+|+||||||||++.|.+.+.+. -|.|..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3478999999999999999999876543 3666666544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.021 Score=63.96 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
...+.|.||+|+||||+++.+++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34789999999999999999998763
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.014 Score=65.48 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNI 374 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 374 (1224)
.+.|+||+|+||||+++.|.+...+..|.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 689999999999999999999887766643
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.013 Score=67.47 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=31.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
.+|..+-|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999988764444555655443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0052 Score=63.20 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.028 Score=64.26 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.+..+.|.|++|||||||+.-++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999997776543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.033 Score=64.00 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+...+.|.||+|+||||+++.+.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45579999999999999999998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.006 Score=72.74 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCCCeEEEEeCCcc
Q 047171 456 GGQKQRIAIARALIRDPKILLLDEATS-ALDAESERIVQEALDQASQGRTMIIIAHRLS 513 (1224)
Q Consensus 456 gGq~qriaiARal~~~~~ililDE~ts-~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~ 513 (1224)
+.|++....++..+.+++++|+..... .+.... ..+.+.+++ .++.+|++.++.+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECcc
Confidence 347888888888889998887765544 344443 445555533 4778888887665
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0084 Score=69.41 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999988764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.047 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+...+.|.||+|+||||+++.+.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0026 Score=66.69 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
..++|+|++||||||+++.|.+.+ |...+++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 479999999999999999998876 4445554
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.006 Score=62.73 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
+|+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987544
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0058 Score=63.02 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=33.4
Q ss_pred EEEEcCCCCChHHHHHHHhccc-------------CCCCceEEECCccCCCCCHHHHhcc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFY-------------DPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~-------------~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|+||||||||||++.|+.-+ +|-.|+ +||+|.-=++.++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 7899999999999999887543 234565 48888777777666543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0058 Score=64.04 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.005 Score=63.58 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNI 374 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 374 (1224)
.+..+.|+|++||||||+++.|.+.+.+..|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 455899999999999999999999887776665
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.076 Score=62.06 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
.+++++|++||||||++.-|+..+...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 488999999999999999998877653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.007 Score=63.44 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0081 Score=63.09 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=24.0
Q ss_pred eceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 997 KGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 997 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455566554 89999999999999999874
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0077 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0089 Score=68.91 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCcEEEECC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERF-----------YDPVKGNILLDG 378 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~-----------~~~~~G~i~~~g 378 (1224)
+..++|||++|+|||||++.|+|. .+|+.|.+.++|
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 458999999999999999999997 556667766654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.028 Score=62.61 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 1001 LKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1001 l~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
-.+++|..+.|.||.|+|||||...+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988875
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0047 Score=70.60 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEe
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHK 380 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 380 (1224)
.+.+++|+|++|+||||+++.|++.+.+..|++.+-+.|
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 356899999999999999999999998888877664444
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0093 Score=59.22 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
..+|+|||||||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0026 Score=71.95 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=33.6
Q ss_pred cceeceeEEEeCCcE--EEEEcCCCCChHHHHHHHhccc
Q 047171 994 MIFKGLTLKIEAGKT--VALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 994 ~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378899999999999 9999999999999999998864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.094 Score=58.56 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+..+.|.||+|+||||+++.+.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999998887763
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.013 Score=60.30 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChHHHHHHHh-cc----cCCCCc----eEEECCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIE-RF----YDPQSG----SVMVDER 1042 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~-rl----~~p~~G----~I~idG~ 1042 (1224)
+|+|+|++|+|||||++.+. +. +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 69999999999999996554 43 566666 5666664
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.065 Score=61.42 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+.|.||+|+|||||..-+..-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4799999999999999999999766543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.012 Score=67.03 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-----------ccCCCCceEEECC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIER-----------FYDPQSGSVMVDE 1041 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~r-----------l~~p~~G~I~idG 1041 (1224)
|-+++|||++|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3467788888766
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.018 Score=59.19 Aligned_cols=35 Identities=34% Similarity=0.627 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcC----CCCCCc----EEEECCE
Q 047171 345 TIGLVGSSGSGKSTVISLL-ERF----YDPVKG----NILLDGH 379 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll-~~~----~~~~~G----~i~~~g~ 379 (1224)
.++|+|++|+|||||++.+ .+. +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 7899999999999999655 444 567766 4555553
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.007 Score=65.99 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIK 382 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 382 (1224)
..+.|+|++||||||+.+.|.+.+. .|.+.++|-.++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 4789999999999999999998775 356777775543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.021 Score=60.64 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC-----------chhhhhcCEEEEEe
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHR-----------LSTIQKADNIVVIK 1188 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr-----------l~ti~~aD~I~vl~ 1188 (1224)
+++++++||+-- ++.+.-+.+ +.+.. .+.+||++-|+ .+.+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 665533333 22333 38899999993 22345699998864
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.055 Score=56.73 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=31.1
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
.++.+|++||+-. ++.+....+.+.+++...+..+|++|.+...
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 3678999999754 6777777788888765455566666766543
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=65.36 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=28.8
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
.+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 789999999999999999998887
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.035 Score=63.87 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
+..+.|.||+|+||||+++.+.........-+.+++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 347899999999999999999988764434444544
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.04 Score=63.22 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|.||+|+||||+++.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=60.20 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0096 Score=61.24 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.12 Score=58.39 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|..-+.|.||+|+|||++++.+.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455679999999999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.059 Score=58.53 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|.||+|+||||+++.+.+.+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999998754
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=60.32 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
=+++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.022 Score=58.75 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=34.2
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch-----------hhhhcCEEEEEeC
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLS-----------TIQKADNIVVIKN 1189 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~-----------ti~~aD~I~vl~~ 1189 (1224)
+++++++||+=- +|++-...+.+..+ .+..|++..++.+ .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999965 66543333333332 3778888888544 3455999988753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1224 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-94 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-90 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-89 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-87 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-85 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-80 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-82 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-75 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-82 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-78 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-71 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-62 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-51 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-43 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-39 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-43 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-34 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-34 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-40 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-35 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-28 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-34 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-29 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-29 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-30 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-29 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-26 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-24 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-23 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 6e-16 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 3e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1uf9a_ | 191 | c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 300 bits (770), Expect = 2e-94
Identities = 126/246 (51%), Positives = 169/246 (68%), Gaps = 3/246 (1%)
Query: 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
E +G I++ +V F Y + I K + L IE G+TVA VG SG GKST+I LI RFYD
Sbjct: 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 69
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAV 1091
SG +++D NIK + LR+ I LV Q+ LF+ T+++NI+ G+ AT+ E+ +AA
Sbjct: 70 VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAK 129
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
+ANAH+FI + GYDT GERGV+LSGGQKQR+++AR L NP IL+LDEATSALD S
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 1152 ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
E+++QEAL+ + RT ++VAHRLSTI AD IVVI+NG +VE GT L++ GAY
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA--KQGAYE 247
Query: 1212 SLIKMQ 1217
L +Q
Sbjct: 248 HLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 288 bits (740), Expect = 5e-90
Identities = 124/257 (48%), Positives = 170/257 (66%), Gaps = 17/257 (6%)
Query: 314 EDEIG-KTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVI 360
++ +G + + +G I+ V F Y T+ VG SG GKST+I
Sbjct: 2 KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 361 SLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASM 420
+L+ RFYD G IL+DGH IK LR+Q+GLV Q+ ILFS ++KENIL+G+P A+
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 421 ETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEA 480
E VV+AA+ AN HDFIM L GY+T+VG+ GV+LSGGQKQR++IAR + +P IL+LDEA
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 481 TSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQ 540
TSALD ESE I+QEALD S+ RT +I+AHRLSTI AD I V+++G ++E+G+H L+
Sbjct: 182 TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241
Query: 541 MNNGEGGAYSKMVQLQQ 557
+ GAY + +Q
Sbjct: 242 ----KQGAYEHLYSIQN 254
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 286 bits (734), Expect = 2e-89
Identities = 124/247 (50%), Positives = 171/247 (69%), Gaps = 4/247 (1%)
Query: 972 EPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031
+ G +E +NV F+YP R + + + LKI AGKTVALVG+SGSGKSTI LI RFYD
Sbjct: 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 66
Query: 1032 PQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAA 1090
G +++D +++ Y L LR+ +ALVSQ LF T+ NI Y + E + +I +AA
Sbjct: 67 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA 126
Query: 1091 VLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
+A A +FI+ ++G DT GE GV LSGGQ+QRIA+ARA+L++ IL+LDEATSALD+
Sbjct: 127 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 186
Query: 1151 SENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAY 1210
SE +Q AL+++ RT +V+AHRLSTI++AD IVV+++G +VE+GT S LL+ G Y
Sbjct: 187 SERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVY 244
Query: 1211 YSLIKMQ 1217
L KMQ
Sbjct: 245 AQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 280 bits (717), Expect = 5e-87
Identities = 116/255 (45%), Positives = 169/255 (66%), Gaps = 17/255 (6%)
Query: 315 DEIGKTLAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISL 362
DE + + G++EF++V F+YP R P T+ LVG SGSGKST+ SL
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 363 LERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGA-SME 421
+ RFYD +G+IL+DGH +++ L LR+Q+ LV+Q LF+ ++ NI + S E
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 422 TVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEAT 481
+ +AA+ A DFI K+++G +T +G+ GV LSGGQ+QRIAIARAL+RD IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 482 SALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQM 541
SALD ESER +Q ALD+ + RT ++IAHRLSTI +AD I V++ G ++E G+H L+
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA- 239
Query: 542 NNGEGGAYSKMVQLQ 556
+ G Y+++ ++Q
Sbjct: 240 ---QHGVYAQLHKMQ 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (704), Expect = 3e-85
Identities = 95/244 (38%), Positives = 155/244 (63%), Gaps = 5/244 (2%)
Query: 975 KGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQS 1034
+G ++ ++V F+YP+RPD ++ +GLT + G+ ALVG +GSGKST+ L++ Y P
Sbjct: 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 1035 GSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYG-KEVATEAEIRKAAVLA 1093
G +++D + + Y R L +A V QEP +F ++++NI YG + T EI AAV +
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 128
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
AH FIS GYDT E G QLSGGQ+Q +ALARA+++ P +L+LD+ATSALD+ S+
Sbjct: 129 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 1154 LVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYY 1211
V++ L + R+ +++ LS +++AD+I+ ++ G + E GT L+ G Y+
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME--KKGCYW 246
Query: 1212 SLIK 1215
++++
Sbjct: 247 AMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 260 bits (667), Expect = 5e-80
Identities = 102/247 (41%), Positives = 148/247 (59%), Gaps = 20/247 (8%)
Query: 324 LRGEIEFKDVDFSYPTRPDTP-------------TIGLVGSSGSGKSTVISLLERFYDPV 370
L G ++F+DV F+YP RPD LVG +GSGKSTV +LL+ Y P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 371 KGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQA 429
G +LLDG + + + ++L Q+ V QEP +F S++ENI G +ME + AA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
+ H FI L GY+T+V + G QLSGGQ+Q +A+ARALIR P +L+LD+ATSALDA S+
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 490 RIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547
V++ L ++ + R++++I LS + +AD I L+ G + E G+H LM+ + G
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME----KKG 243
Query: 548 AYSKMVQ 554
Y MVQ
Sbjct: 244 CYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 267 bits (683), Expect = 2e-82
Identities = 100/243 (41%), Positives = 152/243 (62%), Gaps = 5/243 (2%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ ++V F+Y I + ++ + + +A G SG GKSTI L+ERFY P +G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAH 1096
+D + I + +L RS I VSQ+ + AGTIR+N+ YG E T+ ++ + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
F+ + D +T GERGV++SGGQ+QR+A+ARA L+NP IL+LDEAT++LDS SE++VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1157 EALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216
+AL+ +M GRT +V+AHRLSTI AD I I+ G++ G + L++ Y +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA--THPLYAKYVSE 237
Query: 1217 QAS 1219
Q +
Sbjct: 238 QLT 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 247 bits (632), Expect = 2e-75
Identities = 99/244 (40%), Positives = 145/244 (59%), Gaps = 16/244 (6%)
Query: 328 IEFKDVDFSYPTRPDT-----------PTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
+ + VDF+Y I G SG GKST+ SLLERFY P G I +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIG-KPGASMETVVKAAQAANVHDF 435
DG I + L+ RSQ+G V+Q+ + + +I+EN+ G + + E + + A F
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
+ + D T+VG+ GV++SGGQ+QR+AIARA +R+PKIL+LDEAT++LD+ESE +VQ+A
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 496 LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555
LD +GRT ++IAHRLSTI AD I ++ G++ SG H+ L+ Y+K V
Sbjct: 182 LDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA----THPLYAKYVSE 237
Query: 556 QQSA 559
Q +
Sbjct: 238 QLTV 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 265 bits (679), Expect = 7e-82
Identities = 101/241 (41%), Positives = 152/241 (63%), Gaps = 2/241 (0%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I +N+ F Y +I + L I+ G+ + +VG+SGSGKST+ LI+RFY P++G V
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHE 1097
++D ++ + LR + +V Q+ L +I NI + ++ AA LA AH+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1098 FISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQE 1157
FIS +GY+T GE+G LSGGQ+QRIA+ARA++ NP IL+ DEATSALD SE+++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1158 ALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKMQ 1217
+ K+ GRT +++AHRLST++ AD I+V++ GK+VEQG LLS Y L ++Q
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQLQ 239
Query: 1218 A 1218
+
Sbjct: 240 S 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 254 bits (651), Expect = 5e-78
Identities = 114/245 (46%), Positives = 158/245 (64%), Gaps = 19/245 (7%)
Query: 327 EIEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDPVKG 372
+I F+++ F Y PD+P IG+VG SGSGKST+ L++RFY P G
Sbjct: 1 DITFRNIRFRYK--PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 373 NILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANV 432
+L+DGH + WLR Q+G+V Q+ +L + SI +NI + PG S+E V+ AA+ A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIV 492
HDFI +L +GY T VG+ G LSGGQ+QRIAIARAL+ +PKIL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 493 QEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKM 552
+ + +GRT+IIIAHRLST++ AD I V++ G+++E G H L+ YS +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL---YSYL 235
Query: 553 VQLQQ 557
QLQ
Sbjct: 236 YQLQS 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 238 bits (608), Expect = 1e-71
Identities = 71/259 (27%), Positives = 120/259 (46%), Gaps = 17/259 (6%)
Query: 957 SEIDPEDPKASEDIEEPTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSG 1016
E E + + K + NV FS+ + K + L IE G+ +A+ G +G
Sbjct: 13 EEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTG 72
Query: 1017 SGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVY 1076
SGK++++ LI + G + R ++ SQ + GTI++NI++
Sbjct: 73 SGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENIIF 119
Query: 1077 GKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136
G E + + I+ + +T GE GV LSGGQ+ RI+LARAV K+
Sbjct: 120 GVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178
Query: 1137 ILLLDEATSALDSAS-ENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQ 1195
+ LLD LD + E + + + K+M +T ++V ++ ++KAD I+++ G
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFY 238
Query: 1196 GTQSSLLSMGNGGAYYSLI 1214
GT S L S + S +
Sbjct: 239 GTFSELQS--LRPDFSSKL 255
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 212 bits (540), Expect = 2e-62
Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 37/258 (14%)
Query: 300 RIFEMIDRVPVINSEDEIGKTLAYLRGEIEFKDVDFSYPTRPDTP-------------TI 346
E++++V N + + + +V FS+ P +
Sbjct: 15 GFGELLEKVQQSNGDRKH---------SSDENNVSFSHLCLVGNPVLKNINLNIEKGEML 65
Query: 347 GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTS 406
+ GS+GSGK++++ L+ + +G I G ++ +Q + +
Sbjct: 66 AITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGT 112
Query: 407 IKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIAR 466
IKENI+ G +A + I K + T +G+ GV LSGGQ+ RI++AR
Sbjct: 113 IKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 171
Query: 467 ALIRDPKILLLDEATSALDAES-ERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQ 525
A+ +D + LLD LD + E++ + + + +T I++ ++ +RKAD I +L
Sbjct: 172 AVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
Query: 526 SGRVIESGSHDVLMQMNN 543
G G+ L +
Sbjct: 232 QGSSYFYGTFSELQSLRP 249
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 176 bits (449), Expect = 7e-51
Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 978 IELKNVFFSYPSRPDQ-MIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I+LKNV +Y + K + L I+ G+ V+++G SGSGKST++ +I P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1037 VMVDERNIKSYNLRKL----RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAV 1091
V +D + +L R I V Q+ L T +N+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1092 LANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSAS 1151
A E + E + + + QLSGGQ+QR+A+ARA+ NP I+L D+ T ALDS +
Sbjct: 122 RKRALECLKMAELE-ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1152 ENLVQEALEKM--MVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197
+ + L+K+ G+T VVV H ++ + + I+ +K+G+V +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 158 bits (402), Expect = 1e-44
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 328 IEFKDVDFSYPTRPDTP--------------TIGLVGSSGSGKSTVISLLERFYDPVKGN 373
I+ K+V +Y + + ++G SGSGKST+++++ P +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 374 ILLDGHKIKKL----QLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQ 428
+ +D K L K R ++G V Q+ L + EN+ + + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 429 AANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAES 488
+ +K+ + E QLSGGQ+QR+AIARAL +P I+L D+ T ALD+++
Sbjct: 122 RKRALE-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 489 ERIVQEALD--QASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533
+ + L G+T++++ H ++ R + I L+ G V
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 155 bits (393), Expect = 3e-43
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 28/236 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L++V S L+ ++ AG+ + LVG +G+GKST++ + GS+
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTL-FAGTIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+ +++++ KL A +SQ+ T FA + + + T E+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK-------NPMILLLDEATSALDS 1149
D G QLSGG+ QR+ LA VL+ +LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1150 ASENLVQEALEKMMV-GRTCVVVAHRLS-TIQKADNIVVIKNGKVVEQGTQSSLLS 1203
A ++ + + L + G V+ +H L+ T++ A ++K GK++ G + +L+
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 2e-39
Identities = 50/229 (21%), Positives = 105/229 (45%), Gaps = 27/229 (11%)
Query: 328 IEFKDVDFSYPTRPDTPTI------GLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI 381
++ +DV S P + + LVG +G+GKST+++ + KG+I G +
Sbjct: 4 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPL 62
Query: 382 KKLQLKWLRSQMGLVNQEP-ILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLN 440
+ L ++Q+ F+T + + + + + ++ A
Sbjct: 63 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--------- 113
Query: 441 DGYETKVGQFGVQLSGGQKQRIAIARALIR-------DPKILLLDEATSALDAESERIVQ 493
+ K+G+ QLSGG+ QR+ +A +++ ++LLLDE ++LD + +
Sbjct: 114 -ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172
Query: 494 EALDQ-ASQGRTMIIIAHRLS-TIRKADLIGVLQSGRVIESGSHDVLMQ 540
+ L QG +++ +H L+ T+R A +L+ G+++ SG + ++
Sbjct: 173 KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 154 bits (390), Expect = 9e-43
Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 18/232 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+N+ + + L L I+ G+ + L+G SG GK+T + +I +P G +
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
+R++ L I++V Q ++ T+ +NI + ++ + K +
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKRVR 118
Query: 1097 EFISST--EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
E+ + Y QLSGGQ+QR+A+ARA++ P +LL+DE S LD+
Sbjct: 119 WAAELLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 1155 VQEALEK--MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
++ ++K + T + V H D I V+ G++++ G+ + +
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 130 bits (329), Expect = 1e-34
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
E++ +++ + D + L+G SG GK+T + ++ +P +G I
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 377 DGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDF 435
+ L + +V Q ++ ++ ENI ++ K V
Sbjct: 66 GDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFP---LKIKKFPKDEIDKRVRWA 120
Query: 436 IMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEA 495
L E + ++ QLSGGQ+QR+A+ARA++ +P +LL+DE S LDA+ ++
Sbjct: 121 AELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 496 LD--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ Q T I + H D I V+ G++++ GS
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 220
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 148 bits (375), Expect = 1e-40
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 28/245 (11%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ + ++ Y + KG++L+ AG ++++G SGSGKST + I P G++
Sbjct: 3 LHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1038 MVDERNIKSYN-------------LRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA-- 1081
+V+ +NI LR LR+ + +V Q L++ T+ +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1082 -TEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLL 1140
++ + R+ A + E Y LSGGQ+QR+++ARA+ P +LL
Sbjct: 120 LSKHDARERA--LKYLAKVGIDERAQGKYPV----HLSGGQQQRVSIARALAMEPDVLLF 173
Query: 1141 DEATSALDSASENLVQEALEKM-MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQ 1198
DE TSALD V ++++ G+T VVV H + + + +++ + GK+ E+G
Sbjct: 174 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 233
Query: 1199 SSLLS 1203
+
Sbjct: 234 EQVFG 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 131 bits (331), Expect = 1e-34
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 29/236 (12%)
Query: 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376
++ D+ Y I ++GSSGSGKST + + P +G I++
Sbjct: 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61
Query: 377 DGHKIKKL-------------QLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMET 422
+G I + QL+ LR+++ +V Q L+S ++ EN++ +
Sbjct: 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA--PIQVLG 119
Query: 423 VVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482
+ K ++ K+ E G++ V LSGGQ+QR++IARAL +P +LL DE TS
Sbjct: 120 LSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 483 ALDA-ESERIVQEALDQASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHD 536
ALD +++ A +G+TM+++ H + R + + L G++ E G +
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 145 bits (367), Expect = 9e-40
Identities = 76/236 (32%), Positives = 124/236 (52%), Gaps = 17/236 (7%)
Query: 978 IELKNVFFSYPSRPDQM-IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036
I+L N+ + + ++L + AG+ ++G SG+GKST+I + P GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1037 VMVDERNIKSYN---LRKLRSCIALVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVL 1092
V+VD + + + + L K R I ++ Q L + T+ N+ E+ K V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVK 118
Query: 1093 ANAHEFISST--EDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSA 1150
E +S D +D+Y LSGGQKQR+A+ARA+ NP +LL DEATSALD A
Sbjct: 119 RRVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1151 SENLVQEALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ + E L+ + +G T +++ H + +++ D + VI NG+++EQ T S + S
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 128 bits (322), Expect = 9e-34
Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 328 IEFKDVDFSYPTRPDTPT--------------IGLVGSSGSGKSTVISLLERFYDPVKGN 373
I+ ++ + T G++G+SG+GKST+I + P +G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 374 ILLDGHKIKKL---QLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQA 429
+L+DG ++ L +L R Q+G++ Q L S ++ N+ + ++ K
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP---LELDNTPKDEVK 118
Query: 430 ANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESE 489
V + + + G K + LSGGQKQR+AIARAL +PK+LL DEATSALD +
Sbjct: 119 RRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 490 RIVQEALD--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
R + E L G T+++I H + +++ D + V+ +G +IE + +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 135 bits (341), Expect = 4e-36
Identities = 46/234 (19%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ +N+ + G+++ + G ++G +GSGKST+I +I F G V
Sbjct: 5 LRTENIVKYFGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1038 MVDERNIKSYNLRKL-RSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEI--------- 1086
+ ++I + +L I Q P T+ +N++ G+ E+ +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1087 -RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATS 1145
++ ++ A + + + +LSGGQ + + + RA++ NP ++++DE +
Sbjct: 122 PKEEEMVEKAFKILE--FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 179
Query: 1146 ALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197
+ + + + ++ G T +++ HRL + D++ V+ NG+++ +G
Sbjct: 180 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 121 bits (305), Expect = 3e-31
Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 15/222 (6%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL- 389
V S ++G +GSGKST+I+++ F +G + + I + L
Sbjct: 21 DGVSISVN---KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77
Query: 390 RSQMGLVNQEPILF-STSIKENILIG------KPGASMETVVKAAQAANVHDFIMKLND- 441
+ Q P ++ EN+LIG P S+ + + + K+ +
Sbjct: 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 137
Query: 442 -GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDA-ESERIVQEALDQA 499
+ +LSGGQ + + I RAL+ +PK++++DE + + + I L+
Sbjct: 138 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 500 SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
++G T +II HRL + D + V+ +G++I G + ++
Sbjct: 198 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 132 bits (334), Expect = 2e-35
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 18/232 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
++L+NV ++ + K + L I G+ V VG SG GKST++ +I SG +
Sbjct: 1 VQLQNVTKAWGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVA--TEAEIRKAAVLAN 1094
+ E+ + + + +V Q L+ ++ +N+ +G ++A + I +
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
++ D + LSGGQ+QR+A+ R ++ P + LLDE S LD+A
Sbjct: 116 EVLQLAHLLD-------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 1155 VQEALEK--MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
++ + + +GRT + V H AD IVV+ G+V + G L
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 7e-28
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377
++ ++V ++ + + VG SG GKST++ ++ G++ +
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 378 GHKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQAANVHDFI 436
++ +G+V Q L+ S+ EN+ G A + V + V + +
Sbjct: 61 EKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 437 MKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL 496
L + K LSGGQ+QR+AI R L+ +P + LLDE S LDA ++ +
Sbjct: 119 Q-LAHLLDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 497 D--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
GRTMI + H AD I VL +GRV + G
Sbjct: 174 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 214
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (332), Expect = 4e-35
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 12/231 (5%)
Query: 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035
G + +K++ + I KG++ +IE G+ L+G +G+GK+T + +I P SG
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1036 SVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLAN 1094
V V +N+ ++R I+ + +E + + + + + ++
Sbjct: 58 IVTVFGKNVV-EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1095 AHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENL 1154
A E G +R S G +++ +ARA++ NP + +LDE TS LD +
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1155 VQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
V++ L++ G T +V +H + ++ D I +I NG +VE GT L
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 111 bits (279), Expect = 5e-28
Identities = 48/233 (20%), Positives = 101/233 (43%), Gaps = 19/233 (8%)
Query: 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375
G + KD+ + + GL+G +G+GK+T + ++ P G +
Sbjct: 1 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60
Query: 376 LDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHD 434
+ G + + + +R + + +E + E + A + V
Sbjct: 61 VFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFV---AGFYASSSSEIEEMVER 116
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
G K+ S G +++ IARAL+ +P++ +LDE TS LD + R V++
Sbjct: 117 ATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 174
Query: 495 ALDQ-ASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGE 545
L Q + +G T+++ +H + + D I ++ +G ++E+G+ + L + +
Sbjct: 175 ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 130 bits (329), Expect = 1e-34
Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 12/230 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++++ Y + KG+ LK+ G+ V L+G +G+GK+T + I Q G +
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1038 MVDERNI--KSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANA 1095
+ + ++I K ++ + T+ +N++ G + E K +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 1096 HEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLV 1155
F + G LSGG++Q +A+ RA++ P +L++DE + L + V
Sbjct: 124 SLF-----PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1156 QEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
E ++K+ G T ++V K A V++ G++V +G S LL
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 121 bits (305), Expect = 2e-31
Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 12/214 (5%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKL-QLKWL 389
K +D P + L+G++G+GK+T +S + KG I+ +G I
Sbjct: 23 KGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 390 RSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVG 448
R + LV + +F ++ EN+++G + +K I L + ++
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-----IFSLFPRLKERLK 134
Query: 449 QFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEAL-DQASQGRTMII 507
Q G LSGG++Q +AI RAL+ PK+L++DE + L V E + +G T+++
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
Query: 508 IAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
+ K A VL++G+++ G L+
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 129 bits (325), Expect = 4e-34
Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 16/234 (6%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+ L +V+ + + ++L+++ G+ + L+G SG GK+T + +I +P G +
Sbjct: 4 VRLVDVWKVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1038 MVDERNIKSYNLRKLRSC----IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVL 1092
+ ++ + IA+V Q L+ T+ NI + ++ ++ + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL---RKVPRQEID 117
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
E G + +LSGGQ+QR+AL RA+++ P + L+DE S LD+
Sbjct: 118 QRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 1153 NLVQEALEK--MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
++ L+K +G T + V H D I V+ G + + G+ +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 115 bits (290), Expect = 2e-29
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 16/218 (7%)
Query: 331 KDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKI----KKLQL 386
+++ D + L+G SG GK+T + ++ +P +G I + + K + +
Sbjct: 20 REMSLEVK---DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 387 KWLRSQMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYET 445
+ +V Q L+ ++ +NI + + V + + G
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GLTE 131
Query: 446 KVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QASQGR 503
+ + +LSGGQ+QR+A+ RA++R P++ L+DE S LDA+ ++ L Q G
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 504 TMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
T I + H D I V+ G + + GS D +
Sbjct: 192 TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 126 bits (317), Expect = 2e-33
Identities = 41/215 (19%), Positives = 93/215 (43%), Gaps = 27/215 (12%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
+E++++ Y D+ + + +T+ IE G V G +G GK+T++ I + P G +
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEV----ATEAEIRKAAVL 1092
+ + I K++ I + +E + ++ + + + EI A
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1093 ANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASE 1152
+ ++ +LS G +R+ LA +L N I +LD+ A+D S+
Sbjct: 114 VEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1153 NLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVI 1187
+ V +++ +++ + V+++ R + D +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 114 bits (287), Expect = 2e-29
Identities = 41/206 (19%), Positives = 88/206 (42%), Gaps = 22/206 (10%)
Query: 328 IEFKDVDFSYPTR---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378
+E +D+ Y + G +G GK+T++ + + P+KG I+ +G
Sbjct: 3 LEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
Query: 379 HKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMK 438
I K++ K ++ I +K + + ++ A ++ V D K
Sbjct: 63 VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK 122
Query: 439 LNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQ 498
L +LS G +R+ +A L+ + +I +LD+ A+D +S+ V +++ +
Sbjct: 123 LG------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 499 ASQGRTMIIIAHRLSTIRKADLIGVL 524
+ + ++II+ R + D+ L
Sbjct: 171 ILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 117 bits (295), Expect = 3e-30
Identities = 62/230 (26%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
IE++++ + + L+LK+E+G+ ++G +G+GK+ + LI F+ P SG +
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1038 MVDERNIKSYNLRKLRSCIALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAH 1096
++D +++ +L + IA V Q +LF +++N+ +G + + ++ A
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1097 EFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQ 1156
+ + LSGG++QR+ALARA++ NP ILLLDE SALD ++ +
Sbjct: 116 KIEH--------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 1157 EALEKM--MVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
E L + T + + H + + AD I V+ +GK+++ G +
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 101 bits (252), Expect = 1e-24
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 23/226 (10%)
Query: 328 IEFKDVDFSYPTR---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378
IE + + + ++G +G+GK+ + L+ F+ P G ILLDG
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61
Query: 379 HKIKKLQLKWLRSQMGLVNQEPILF-STSIKENILIGKPGASMETVVKAAQAANVHDFIM 437
+ L + + V Q LF ++K+N+ G ++ + A
Sbjct: 62 KDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119
Query: 438 KLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD 497
L+ + + LSGG++QR+A+ARAL+ +PKILLLDE SALD ++ +E L
Sbjct: 120 LLD--------RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 498 --QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQ 540
T++ I H + R AD I V+ G++I+ G + + +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 117 bits (293), Expect = 8e-30
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 13/233 (5%)
Query: 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037
I +KNV + + + + + IE G+ ++G SG+GK+T + +I P +G +
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1038 MVDERNIKSYNLRKLRSC---IALVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLA 1093
D+R + S + I +V Q L+ T +NI + ++ +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1094 NAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASEN 1153
+ + +LSG Q+QR+ALARA++K+P +LLLDE S LD+ +
Sbjct: 123 EVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 1154 LVQEALEK--MMVGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
+ +++ +G T +VV+H + I AD + V+ GK+V+ G L
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.1 bits (241), Expect = 7e-23
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 16/223 (7%)
Query: 320 TLAYLRGEIE-FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378
+ + +G++ +V+ + + G++G SG+GK+T + ++ P G + D
Sbjct: 10 SKVFKKGKVVALDNVNINIE---NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 379 HKIKKLQLKWLRS---QMGLVNQEPILFST-SIKENILIGKPGASMETVVKAAQAANVHD 434
+ + ++G+V Q L+ + ENI M + V
Sbjct: 67 RLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAK 126
Query: 435 FIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQE 494
+ + F +LSG Q+QR+A+ARAL++DP +LLLDE S LDA +
Sbjct: 127 IL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 495 ALD--QASQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGS 534
+ Q+ G T+++++H + I AD +GVL G++++ G
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 114 bits (287), Expect = 5e-29
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 14/210 (6%)
Query: 999 LTLKIEAGK-TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057
L + E G+ L+G +G+GKS + LI P G V ++ +I L R I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1058 LVSQEPTLFAG-TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQ 1116
V Q+ LF ++ +NI YG E + G + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPAR 126
Query: 1117 LSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEK--MMVGRTCVVVAHR 1174
LSGG++QR+ALARA++ P +LLLDE SA+D ++ ++ E L + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 1175 LSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203
L AD + V+ NG++VE+G L S
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 107 bits (268), Expect = 2e-26
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 324 LRGEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKK 383
+R E + + L+G +G+GKS + L+ P +G + L+G I
Sbjct: 5 VRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT- 63
Query: 384 LQLKWLRSQMGLVNQEPILFST-SIKENILIGKPGASM-ETVVKAAQAANVHDFIMKLND 441
L R +G V Q+ LF S+ NI G E + + A L+
Sbjct: 64 -PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD- 121
Query: 442 GYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALDAESERIVQEALD--QA 499
+ +LSGG++QR+A+ARAL+ P++LLLDE SA+D +++ ++ E L Q
Sbjct: 122 -------RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 500 SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMNNGE 545
++ + H L AD + V+ +GR++E G L NGE
Sbjct: 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 98.1 bits (243), Expect = 5e-24
Identities = 17/188 (9%), Positives = 41/188 (21%), Gaps = 29/188 (15%)
Query: 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAG 1068
+ + G+ G GK+T++ I ++ +E R I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1069 TIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALA 1128
+ G + + A
Sbjct: 63 FFTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYR 93
Query: 1129 RAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIK 1188
A ++++DE + + V I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1189 NGKVVEQG 1196
++E
Sbjct: 154 GAVLIELT 161
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 96.2 bits (238), Expect = 2e-23
Identities = 20/191 (10%), Positives = 47/191 (24%), Gaps = 29/191 (15%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
I + G G GK+T++ + + + + + + + ++ I S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIA 465
L+G G +++ + A
Sbjct: 63 FFTSKKLVGSYGVNVQ-----------------------------YFEELAIPILERAYR 93
Query: 466 RALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQ 525
A K++++DE + ++ I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 526 SGRVIESGSHD 536
+IE +
Sbjct: 154 GAVLIELTPEN 164
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 78.0 bits (190), Expect = 6e-16
Identities = 48/320 (15%), Positives = 123/320 (38%), Gaps = 5/320 (1%)
Query: 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCL 698
RL A ++ + + A L ++ F K D +S L
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPL 60
Query: 699 IFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICAR 758
+ +GL L I + I Y + + +V +R ++ + + +FD+ +
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 759 LANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSRSV 818
++ V S + + +++ S + + +W+++I+++ + P+ S
Sbjct: 121 --YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 178
Query: 819 LMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQSWF 878
+S+S+ + + + + A + H+ + F Q+ F + + + +K
Sbjct: 179 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238
Query: 879 SGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSD 938
S I Q + + ++ + A ++ + F +++ + + ++ +
Sbjct: 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 298
Query: 939 IAKGSSAIRTIFTILDRKSE 958
+G +A +T+F ILD + E
Sbjct: 299 FQRGMAACQTLFAILDSEQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 45/312 (14%), Positives = 102/312 (32%), Gaps = 10/312 (3%)
Query: 7 LFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINE-LGTSDIS-------ISIEA 58
L+ K L+ + I + + +L ++++ G +D S + I
Sbjct: 7 LWPTI-APFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGL 65
Query: 59 VDKVPEKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHS 118
+ + + ++ M + + +G ST +++ IT D+
Sbjct: 66 MILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQ 125
Query: 119 IQDAVAEKIPNCLAHLTSFIGSILVAFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGA 178
+ + + + + S IG ++ F SW+L++ + + + + V K + +
Sbjct: 126 VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISK 185
Query: 179 QGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQGLTKGLLLGS 238
++ AEQ + + V F G+ KRF K G+K +
Sbjct: 186 NMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245
Query: 239 MGMTYGAWAFQS-WVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTA 297
+ + + S G + V I + S + + A
Sbjct: 246 IQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 305
Query: 298 ATRIFEMIDRVP 309
+F ++D
Sbjct: 306 CQTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 73.0 bits (177), Expect = 4e-14
Identities = 30/322 (9%), Positives = 98/322 (30%), Gaps = 6/322 (1%)
Query: 641 RLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKD----DSKLKSETRLY 696
R L+ R + I + + D K+ T
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 697 CLIFLGLAFLTLIANLIQHYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAIC 756
+ + I+ Y ++ +R+K+ + ++ ++
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 757 ARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTWRVAIVMIAVQPLNIGCFYSR 816
N+ + FI + + + +A ++ + ++ + + + P I Y
Sbjct: 124 VI--NDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 817 SVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQS 876
++ ++ + ++ +E E + +F+ +D F + ++K +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 877 WFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMT 936
++ + +T + + G ++ L L + +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 937 SDIAKGSSAIRTIFTILDRKSE 958
+ + + +++ +F ++D +
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYD 323
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 6/179 (3%)
Query: 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLF 1066
+ V L G G GK+T+I V R++ + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1067 AGTIRQNIVYGKEVATEAEIRKAAVLANAHEFI-----SSTEDGYDTYCGERGVQLSGGQ 1121
+ + +E + + S+ G + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1122 KQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQK 1180
+ I R L P ++L LV+E + V V +R +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENRNHLLPD 179
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 25/188 (13%), Positives = 58/188 (30%), Gaps = 8/188 (4%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405
+ L G G GK+T+I + + + + + + ++ S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLND-----GYETKVGQFGVQLSGGQKQ 460
E + + VV + +++ D G V ++ +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADL 520
I R + P ++L +V+E ++ + +R + D+
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP--DI 180
Query: 521 IGVLQSGR 528
+ +QS R
Sbjct: 181 VTCVQSSR 188
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.5 bits (106), Expect = 3e-05
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 433 HDFIMKLNDGYETKVGQFGVQLSGGQKQRIAI----ARALIRDPKILLLDEATSALDAES 488
+ +K + K + LSGG+K A+ A + +LDE +ALD +
Sbjct: 312 FNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN 371
Query: 489 ERIVQEALDQ-ASQGRTMIIIAHRLSTIRKAD-LIGV 523
+ + + + + I+I+ + + K+D L+GV
Sbjct: 372 VQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 0.001
Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 1118 SGGQKQRIAL----ARAVLKNPMILLLDEATSALDSASENLVQEALEKMMVGRT-CVVVA 1172
SGG+K AL A + +LDE +ALD + + + + +V++
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 1173 HRLSTIQKADNIVVIKNGKVVEQGTQSSLLSM 1204
+ + +K+D +V + + ++ + S ++++
Sbjct: 394 LKNTMFEKSDALVGVY--RQQQENS-SKIITL 422
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Score = 38.4 bits (88), Expect = 0.002
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 346 IGLVGSSGSGKSTVISLLERFYDPV 370
IG+ G+ GSGKSTV +LL + PV
Sbjct: 6 IGITGNIGSGKSTVAALLRSWGYPV 30
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1224 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.63 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.05 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.02 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.87 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.86 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.68 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.6 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.41 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.1 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.92 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.66 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.49 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.45 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.36 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.27 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.18 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.15 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.12 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.1 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.08 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.07 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.03 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.03 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.02 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.02 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.02 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.02 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.01 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.93 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.91 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.89 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.81 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.81 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.75 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.67 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.65 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.62 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.62 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.55 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.48 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.46 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.43 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.41 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.38 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.36 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.36 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.35 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.35 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.33 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.32 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.28 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.23 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.22 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.2 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.15 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.14 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.05 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.03 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.02 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.98 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.95 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.95 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.92 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.91 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.83 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.83 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.82 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.8 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.78 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.77 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.76 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.74 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.7 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.67 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.55 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.54 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.54 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.49 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.47 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.44 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.43 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.43 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.39 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.32 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.28 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.26 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.26 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.24 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.22 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.19 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.18 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.18 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.16 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.14 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.04 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.03 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.02 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.97 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.97 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.97 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.93 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.92 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.89 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.89 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.88 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.85 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.84 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.83 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.83 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.74 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.71 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.69 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.67 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.67 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.65 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.63 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.61 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.51 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.5 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.48 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.4 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.39 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.36 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.34 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.31 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.3 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.28 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.28 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.28 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.24 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.22 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.22 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.17 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.17 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.09 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.08 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.05 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.04 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.99 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.99 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.96 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.95 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.92 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.84 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.82 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.73 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.71 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.66 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.64 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.63 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.63 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.59 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.59 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.58 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.41 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.41 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.41 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.4 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.37 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.35 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.34 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.33 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.24 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.21 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.21 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.17 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.14 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.13 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.96 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.94 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.93 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.92 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.83 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.8 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.7 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.68 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.59 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.55 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.52 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.49 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.45 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.44 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.4 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.4 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.37 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.31 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.3 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.29 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.27 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.26 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.11 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.03 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.02 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.01 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.98 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.95 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.89 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.78 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.74 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.7 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.68 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.68 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.64 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.59 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.59 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.55 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.47 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.47 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.45 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.44 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.43 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.39 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.35 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.35 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.32 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.3 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.28 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.27 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.2 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.18 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.16 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.15 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.11 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.1 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.04 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.98 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.97 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.94 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.93 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.88 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.84 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.7 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.68 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.61 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.57 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.54 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.48 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.45 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.36 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.26 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.15 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.14 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.09 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.99 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.95 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.88 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.86 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.81 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.79 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.78 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.71 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.7 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.6 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.59 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.53 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.52 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.49 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.49 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.43 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.4 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.34 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.33 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.27 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.23 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.15 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.14 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.14 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.13 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.11 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.1 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.89 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.84 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.84 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.72 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.7 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.68 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.61 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.59 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.58 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.56 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.44 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.31 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.21 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.13 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.13 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.09 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.08 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.07 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.07 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.0 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.96 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 86.95 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.9 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.89 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.8 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.79 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.64 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.6 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.54 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.49 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.34 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.24 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.08 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.98 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.95 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.78 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.77 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.72 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.71 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.61 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.56 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.45 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.41 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.41 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.27 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.16 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.16 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.11 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.1 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.04 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.04 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.66 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.56 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 82.93 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.91 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 82.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 82.27 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.26 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.12 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.01 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 81.99 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 81.75 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.33 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.74 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 80.6 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-69 Score=580.30 Aligned_cols=240 Identities=42% Similarity=0.687 Sum_probs=232.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
+|+|+||+|+|++. ++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.|||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999754 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1057 ALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1057 ~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
+||||+|++|++||+|||.++.+..++++++++++.+++++++..+|.|++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
|||||||||+||+.+++.|.+.|+++.+++|+|+||||+++++.||||+||++|+|+|+|+|+||+++ +++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~-~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS-TTCHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 57899999998
Q ss_pred hh
Q 047171 1217 QA 1218 (1224)
Q Consensus 1217 q~ 1218 (1224)
|.
T Consensus 239 Q~ 240 (241)
T d2pmka1 239 QS 240 (241)
T ss_dssp HC
T ss_pred hc
Confidence 85
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.3e-69 Score=585.66 Aligned_cols=242 Identities=52% Similarity=0.802 Sum_probs=235.0
Q ss_pred CcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHh
Q 047171 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 974 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1053 (1224)
.+|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 46889999999999854 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1054 SCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++|+||||+|++|++||+|||.++.+..+++++++|++.+++++++..+|+||||.+|++|.+|||||||||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
+|+|||||||||+||++|++.|.+.|+++.+++|+|+||||++.++.||||+||++|+|+|+|+|+||+++ +|.|++|
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~--~~~y~~l 249 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEHL 249 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT--TSHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 8999999
Q ss_pred HHHhh
Q 047171 1214 IKMQA 1218 (1224)
Q Consensus 1214 ~~~q~ 1218 (1224)
|+.|.
T Consensus 250 ~~~Q~ 254 (255)
T d2hyda1 250 YSIQN 254 (255)
T ss_dssp HTTTT
T ss_pred HHHcC
Confidence 98875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-67 Score=573.83 Aligned_cols=243 Identities=51% Similarity=0.785 Sum_probs=233.8
Q ss_pred CcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHh
Q 047171 974 TKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLR 1053 (1224)
Q Consensus 974 ~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1053 (1224)
..|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++++.+|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence 45789999999999854 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1054 SCIALVSQEPTLFAGTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++|+||||+|++|++|+++|+.++.+ ..++++++++++.+++++++..+|+||+|.++++|.+|||||||||||||||+
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999864 56899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHH
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYS 1212 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~ 1212 (1224)
++|+|||||||||+||+++++.|++.|+++.+++|+|+||||++.++.||+|+||++|+|+|+|||+||+++ +|.|++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~--~~~y~~ 246 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ--HGVYAQ 246 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH--TSSHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CcHHHH
Confidence 999999999999999999999999999999899999999999999999999999999999999999999987 899999
Q ss_pred HHHHhhc
Q 047171 1213 LIKMQAS 1219 (1224)
Q Consensus 1213 l~~~q~~ 1219 (1224)
||+.|.+
T Consensus 247 l~~~Q~g 253 (253)
T d3b60a1 247 LHKMQFG 253 (253)
T ss_dssp HHHHTCC
T ss_pred HHHHccC
Confidence 9999863
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-66 Score=566.83 Aligned_cols=241 Identities=39% Similarity=0.724 Sum_probs=230.3
Q ss_pred CCcccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH
Q 047171 973 PTKGFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL 1052 (1224)
Q Consensus 973 ~~~g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1052 (1224)
..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 34678999999999997767789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1053 RSCIALVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
|++|+||||+|++|++||+||+.++. +..++++++++++.+++++++..+|+|++|.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999984 45678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCch
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGA 1209 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~ 1209 (1224)
+++|+|||||||||+||+.++..|++.|+++.+ ++|+|+||||+++++.||||+||++|+|+|+|||+||+++ +|.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~--~~~ 244 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGC 244 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--TSH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CcH
Confidence 999999999999999999999999999988754 7999999999999999999999999999999999999997 899
Q ss_pred hHHHHH
Q 047171 1210 YYSLIK 1215 (1224)
Q Consensus 1210 y~~l~~ 1215 (1224)
|++||+
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7e-67 Score=565.15 Aligned_cols=238 Identities=42% Similarity=0.699 Sum_probs=228.9
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|++|||+|+|++ ++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999974 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccHHHHHccCC-CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1058 LVSQEPTLFAGTIRQNIVYGK-EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1058 ~V~Qdp~LF~gTIreNl~~~~-~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
||||||.+|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 4678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLIKM 1216 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1216 (1224)
|||||||||+||+.+++.|++.|+++.+++|+|+||||+++++.||||+||++|+|+|+|||+||+++ ++.|++|++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~--~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHHC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--ChHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999997 8999999998
Q ss_pred hhc
Q 047171 1217 QAS 1219 (1224)
Q Consensus 1217 q~~ 1219 (1224)
|..
T Consensus 238 Q~~ 240 (242)
T d1mv5a_ 238 QLT 240 (242)
T ss_dssp CCC
T ss_pred Hhh
Confidence 753
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.4e-62 Score=531.57 Aligned_cols=232 Identities=53% Similarity=0.847 Sum_probs=222.0
Q ss_pred cccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH
Q 047171 321 LAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW 388 (1224)
Q Consensus 321 ~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~ 388 (1224)
.+..+|+|+|+||+|+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 33446889999999999753 256799999999999999999999999999999999999999999999
Q ss_pred HhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 389 LRSQMGLVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
+|++|+||+|+|++|++||+|||+||.++.++++++++++.+++++++.++|+|++|.+|++|.+|||||||||+|||||
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCch
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGA 548 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 548 (1224)
+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.++.||+|++|++|+|++.|+|+||+++ ++.
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~----~~~ 245 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK----QGA 245 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT----TSH
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC----CcH
Confidence 9999999999999999999999999999999899999999999999999999999999999999999999998 899
Q ss_pred HHHHHHHH
Q 047171 549 YSKMVQLQ 556 (1224)
Q Consensus 549 y~~~~~~~ 556 (1224)
|+++|+.|
T Consensus 246 y~~l~~~Q 253 (255)
T d2hyda1 246 YEHLYSIQ 253 (255)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHc
Confidence 99999765
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-62 Score=523.93 Aligned_cols=227 Identities=49% Similarity=0.819 Sum_probs=217.7
Q ss_pred cEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccE
Q 047171 327 EIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMG 394 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 394 (1224)
+|+|+||||+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 48999999999643 256799999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 395 LVNQEPILFSTSIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 395 ~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
||+|+|++|++||+|||+++.++.+.+++.++++.+++++++..+|+|++|.+|++|.+|||||||||||||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHH
Q 047171 475 LLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQ 554 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~ 554 (1224)
||||||||+||+.+++.|.+.|+++.+++|+|+||||+++++.||+|+||++|+|++.|+|+||++++ ++.|+++|+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~---~~~y~~l~~ 237 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP---ESLYSYLYQ 237 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST---TCHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC---CCHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999873 578999998
Q ss_pred HH
Q 047171 555 LQ 556 (1224)
Q Consensus 555 ~~ 556 (1224)
.|
T Consensus 238 ~Q 239 (241)
T d2pmka1 238 LQ 239 (241)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.5e-61 Score=522.38 Aligned_cols=233 Identities=49% Similarity=0.776 Sum_probs=221.3
Q ss_pred cccccccEEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH
Q 047171 321 LAYLRGEIEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW 388 (1224)
Q Consensus 321 ~~~~~~~i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~ 388 (1224)
.+...|+|+|+||||+|++. ++++++|||||||||||||+++|+|+|+|++|+|++||+|+++++.++
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred cCCCceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhh
Confidence 34456889999999999754 256799999999999999999999999999999999999999999999
Q ss_pred HhcccEEecCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHH
Q 047171 389 LRSQMGLVNQEPILFSTSIKENILIGKP-GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARA 467 (1224)
Q Consensus 389 ~r~~i~~v~Q~~~lf~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARa 467 (1224)
+|++|+||+|+|++|++|+++|+.++.+ ..++++++++++.+++++++..+|+|++|.++++|.+|||||||||+||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999975 568899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCc
Q 047171 468 LIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGG 547 (1224)
Q Consensus 468 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 547 (1224)
|+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.++.||+|+||++|+|+++|+|+||+++ ++
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~----~~ 242 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ----HG 242 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH----TS
T ss_pred HhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC----Cc
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999998 89
Q ss_pred hHHHHHHHHH
Q 047171 548 AYSKMVQLQQ 557 (1224)
Q Consensus 548 ~y~~~~~~~~ 557 (1224)
.|+++|+.|.
T Consensus 243 ~y~~l~~~Q~ 252 (253)
T d3b60a1 243 VYAQLHKMQF 252 (253)
T ss_dssp SHHHHHHHTC
T ss_pred HHHHHHHHcc
Confidence 9999998763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-60 Score=511.97 Aligned_cols=228 Identities=44% Similarity=0.722 Sum_probs=214.8
Q ss_pred cccccEEEEeEEEECCCC-------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH
Q 047171 323 YLRGEIEFKDVDFSYPTR-------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL 389 (1224)
Q Consensus 323 ~~~~~i~~~~v~f~y~~~-------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 389 (1224)
..+|.|+|+||||+||+. ++++++|||||||||||||+++|+|+|+|++|+|++||+|+++++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 356889999999999753 2466999999999999999999999999999999999999999999999
Q ss_pred hcccEEecCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHh
Q 047171 390 RSQMGLVNQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARAL 468 (1224)
Q Consensus 390 r~~i~~v~Q~~~lf~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal 468 (1224)
|++|+||+|+|++|++||+|||.+|. +..+.+++.++++.+++++++..+|+|++|.++++|.+|||||||||||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999995 45678889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCC
Q 047171 469 IRDPKILLLDEATSALDAESERIVQEALDQASQ--GRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEG 546 (1224)
Q Consensus 469 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~ 546 (1224)
+++|+|||||||||+||+.++..+.+.|.++.+ |+|+|+||||++.++.||+|+||++|+|+++|+|+||+++ +
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~----~ 242 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK----K 242 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH----T
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC----C
Confidence 999999999999999999999999999987643 8999999999999999999999999999999999999998 8
Q ss_pred chHHHHHH
Q 047171 547 GAYSKMVQ 554 (1224)
Q Consensus 547 ~~y~~~~~ 554 (1224)
+.|++|++
T Consensus 243 ~~y~~l~~ 250 (251)
T d1jj7a_ 243 GCYWAMVQ 250 (251)
T ss_dssp SHHHHHHC
T ss_pred cHHHHHhc
Confidence 99998874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.7e-60 Score=512.33 Aligned_cols=225 Identities=44% Similarity=0.704 Sum_probs=213.8
Q ss_pred EEEEeEEEECCCC-----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 328 IEFKDVDFSYPTR-----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~-----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
|+++||||+|++. ++++++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 81 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEE
Confidence 7899999999754 24669999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 047171 397 NQEPILFSTSIKENILIGK-PGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKIL 475 (1224)
Q Consensus 397 ~Q~~~lf~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~il 475 (1224)
+|+|++|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.+|++|.+|||||||||||||||+++|+||
T Consensus 82 ~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~il 161 (242)
T d1mv5a_ 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (242)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred ccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999985 457788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHHHH
Q 047171 476 LLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMVQL 555 (1224)
Q Consensus 476 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~~~ 555 (1224)
|||||||+||+++++.+++.|+++.+|+|+|+||||++.++.||+|+||++|+|+++|+|+||+++ ++.|+++++.
T Consensus 162 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~----~~~y~~l~~~ 237 (242)
T d1mv5a_ 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT----HPLYAKYVSE 237 (242)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH----CHHHHHHHHC
T ss_pred EecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC----ChHHHHHHHH
Confidence 999999999999999999999998899999999999999999999999999999999999999998 8999999875
Q ss_pred H
Q 047171 556 Q 556 (1224)
Q Consensus 556 ~ 556 (1224)
|
T Consensus 238 Q 238 (242)
T d1mv5a_ 238 Q 238 (242)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-54 Score=479.46 Aligned_cols=219 Identities=30% Similarity=0.459 Sum_probs=198.4
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+.|.|+|++|. ..|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 34666665542 34799999999999999999999999999999999999999999999999 3
Q ss_pred eEEEecCCCCCcccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCC
Q 047171 1056 IALVSQEPTLFAGTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNP 1135 (1224)
Q Consensus 1056 i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p 1135 (1224)
++||||+|++|++||+|||.++. ..++.+++++++.+++.+++..+|+++++.++++|.+|||||||||||||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeeccccccc-cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999985 46788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHH-HHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchhHHHH
Q 047171 1136 MILLLDEATSALDSASENLVQEA-LEKMMVGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSLI 1214 (1224)
Q Consensus 1136 ~ILlLDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l~ 1214 (1224)
+|||||||||+||+.+++.|.+. +....+++|+|+||||++.++.||||++|++|+|+++|||+||++. ++.|.+.+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~--~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--CHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc--CcHHHHHH
Confidence 99999999999999999988875 4555678999999999999999999999999999999999999986 56776655
Q ss_pred H
Q 047171 1215 K 1215 (1224)
Q Consensus 1215 ~ 1215 (1224)
.
T Consensus 256 ~ 256 (281)
T d1r0wa_ 256 M 256 (281)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.2e-51 Score=436.73 Aligned_cols=211 Identities=29% Similarity=0.508 Sum_probs=187.7
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999952 389999999999999999999999999999999999999999999999999987765 78999
Q ss_pred EEecCCCCCc-ccHHHHHccCC---CCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGK---EVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~---~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
||||++.+|. .||+|||.++. ....++++.++++..++.++ ......+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhh-----------HhCChhhCCHHHhcchhhhhhhhc
Confidence 9999999996 59999998763 22356677777776655443 334456799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMG 1205 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~ 1205 (1224)
+|+|||||||||+||+.+.+.+++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|+++|+|+|+++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999864 47899999999999877 9999999999999999999999873
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.4e-51 Score=434.52 Aligned_cols=222 Identities=25% Similarity=0.400 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+++.+.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999996 45799999999999999999999999999999999999999999999999999988764 6789
Q ss_pred EEEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
|||||+|.+|. .||+||+.++.. ..+.+++.+.+ .+.++.+ |++........+||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 99999999995 699999998753 34555544322 2223222 45555667778899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAY 1210 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y 1210 (1224)
+|+|||||||||+||+.+...|++.|+++. .|+|+|+|||+++.+.. ||||++|++|+|+++|+++|+.++ +...|
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~~~~ 232 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-PNSVF 232 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-CSBHH
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCCHH
Confidence 999999999999999999999999999874 38999999999999866 999999999999999999999987 45555
Q ss_pred H
Q 047171 1211 Y 1211 (1224)
Q Consensus 1211 ~ 1211 (1224)
-
T Consensus 233 ~ 233 (239)
T d1v43a3 233 V 233 (239)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-51 Score=437.04 Aligned_cols=217 Identities=27% Similarity=0.476 Sum_probs=162.4
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.++.+.+. .|++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceee
Confidence 78999999995 4569999999999999999999999999999999999999999999999999988775 467899
Q ss_pred EEecCCCCCc-ccHHHHHccCCC--CCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHH
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKE--VAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARA 1130 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~--~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARA 1130 (1224)
||||+|.+|. .|++||+.++.. ..+ ++.+.++++..++.++.. ....+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-----------~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999996 599999998742 112 234556666666555433 3345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 047171 1131 VLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNG 1207 (1224)
Q Consensus 1131 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~ 1207 (1224)
|+.+|++||||||||+||+.+.+.|++.|.+.. .|+|+|+|||+++.+.. ||||++|++|+|+++|+++|++++ +.
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~ 223 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-PA 223 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CS
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC-CC
Confidence 999999999999999999999999999998864 48999999999999877 999999999999999999999987 45
Q ss_pred chhH
Q 047171 1208 GAYY 1211 (1224)
Q Consensus 1208 g~y~ 1211 (1224)
..|-
T Consensus 224 ~~~v 227 (232)
T d2awna2 224 DRFV 227 (232)
T ss_dssp BHHH
T ss_pred CHHH
Confidence 5553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-51 Score=437.92 Aligned_cols=221 Identities=30% Similarity=0.466 Sum_probs=190.3
Q ss_pred EEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH---Hh
Q 047171 978 IELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK---LR 1053 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1053 (1224)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 25899999999999999999999999999999999999999999999999999888665 56
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCC--CCCC----HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGK--EVAT----EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~--~~~~----deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++||||||+|.+|. .||+|||.++. ...+ ++.+.++++.+++.+ .....+.+||||||||+|
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHH
Confidence 88999999999996 59999998752 1222 244556666665543 233445679999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-V-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|+||||||||++||+.+...|++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|+|.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 3 8999999999999876 99999999999999999999998
Q ss_pred cCCCchh
Q 047171 1204 MGNGGAY 1210 (1224)
Q Consensus 1204 ~~~~g~y 1210 (1224)
+ +...|
T Consensus 231 ~-P~~~~ 236 (240)
T d3dhwc1 231 H-PKTPL 236 (240)
T ss_dssp S-SCCTT
T ss_pred C-CCChH
Confidence 7 44444
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5e-51 Score=434.86 Aligned_cols=221 Identities=29% Similarity=0.409 Sum_probs=190.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC---HHHHh
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN---LRKLR 1053 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~lR 1053 (1224)
.|+++||+++|+.. +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||+|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 457899999999999999999999999999999999999999999999999997765 44568
Q ss_pred cceEEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHH
Q 047171 1054 SCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIA 1126 (1224)
Q Consensus 1054 ~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRla 1126 (1224)
++||||||+|.||+ .||+|||.++.. ..+.++ +.++++.+++ +........+||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-----------~~~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI-----------HHVLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC-----------GGGTTSCGGGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcCh-----------HhhhhCChhhCCHHHHhHHH
Confidence 89999999999996 599999998743 334443 4444444443 33444555679999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 047171 1127 LARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLS 1203 (1224)
Q Consensus 1127 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~ 1203 (1224)
|||||+.+|+|||||||||+||+.+...|++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998874 28999999999999866 99999999999999999999998
Q ss_pred cCCCchh
Q 047171 1204 MGNGGAY 1210 (1224)
Q Consensus 1204 ~~~~g~y 1210 (1224)
+ +...|
T Consensus 231 ~-P~~~~ 236 (242)
T d1oxxk2 231 N-PVSIQ 236 (242)
T ss_dssp S-CSSHH
T ss_pred C-CCCHH
Confidence 7 45554
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.2e-51 Score=437.20 Aligned_cols=219 Identities=26% Similarity=0.439 Sum_probs=188.7
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHH----H
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRK----L 1052 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1052 (1224)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999995 456999999999999999999999999999999999999999999999999998766544 3
Q ss_pred hcceEEEecCCCCCc-ccHHHHHccCCC--CCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1053 RSCIALVSQEPTLFA-GTIRQNIVYGKE--VATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~-gTIreNl~~~~~--~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
|++||||||+|.||. .||+||+.++.. ..+.++ +.++++.+++.+ .....+.+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-----------~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-----------LLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-----------GTTCCGGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHH
Confidence 788999999999996 599999987631 234444 444555554433 23344567999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-V-GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLL 1202 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~-~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl 1202 (1224)
+|||||+.+|+||||||||++||+.+...|++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.||++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998875 3 8999999999999877 9999999999999999999999
Q ss_pred hcCCCchh
Q 047171 1203 SMGNGGAY 1210 (1224)
Q Consensus 1203 ~~~~~g~y 1210 (1224)
.+ +...|
T Consensus 229 ~~-P~~~~ 235 (240)
T d1g2912 229 DK-PANTF 235 (240)
T ss_dssp HS-CSBHH
T ss_pred hC-CCCHH
Confidence 87 44444
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-50 Score=431.16 Aligned_cols=214 Identities=33% Similarity=0.487 Sum_probs=178.5
Q ss_pred EEEEEEEEECCCCCC-ccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH----
Q 047171 978 IELKNVFFSYPSRPD-QMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL---- 1052 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1052 (1224)
|+++||+++|+.... ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999974321 247999999999999999999999999999999999999999999999999999998775
Q ss_pred hcceEEEecCCCCCc-ccHHHHHccCC-----CCCCHHHHHH-HHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHH
Q 047171 1053 RSCIALVSQEPTLFA-GTIRQNIVYGK-----EVATEAEIRK-AAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRI 1125 (1224)
Q Consensus 1053 R~~i~~V~Qdp~LF~-gTIreNl~~~~-----~~~~deei~~-al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRl 1125 (1224)
|++||||||+|.+|. .||+||+.++. +..+.++..+ +.+..+ . ..+|+. .......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~---~-~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK---M-AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH---H-TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHH---h-hchhhh---hhcCChhhCCHHHHHHH
Confidence 467999999999885 59999998642 2334443332 222211 1 112221 22344567999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 047171 1126 ALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VGRTCVVVAHRLSTIQKADNIVVIKNGKVVEQGTQ 1198 (1224)
Q Consensus 1126 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt~ 1198 (1224)
+|||||+.+|+|||||||||+||+.+.+.|++.|.++. .|+|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999874 37899999999998888999999999999999975
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.2e-49 Score=427.84 Aligned_cols=225 Identities=29% Similarity=0.474 Sum_probs=189.2
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCC--------
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYN-------- 1048 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1048 (1224)
.|+++||+++|. +.+||+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 456999999999999999999999999999999999999999999999999986543
Q ss_pred -----HHHHhcceEEEecCCCCCc-ccHHHHHccC---CCCCCHHH----HHHHHHHHhHHHHHHhcccccccccCCCCC
Q 047171 1049 -----LRKLRSCIALVSQEPTLFA-GTIRQNIVYG---KEVATEAE----IRKAAVLANAHEFISSTEDGYDTYCGERGV 1115 (1224)
Q Consensus 1049 -----~~~lR~~i~~V~Qdp~LF~-gTIreNl~~~---~~~~~dee----i~~al~~a~l~~~I~~lp~gldt~vge~G~ 1115 (1224)
...+|++||||||+|.+|. .|++||+.++ ....+.++ +.++++.+++.+... .....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----------GKYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH----------TSCGG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhh----------ccCcc
Confidence 3457899999999999996 6999999865 12234333 444444444433221 12245
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 047171 1116 QLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVV 1193 (1224)
Q Consensus 1116 ~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Iv 1193 (1224)
+||||||||++|||||+.+|+|||||||||+||+.+.+.|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999998875 57999999999999876 9999999999999
Q ss_pred EecChhHHhhcCCCchhH-HHHH
Q 047171 1194 EQGTQSSLLSMGNGGAYY-SLIK 1215 (1224)
Q Consensus 1194 e~Gt~~eLl~~~~~g~y~-~l~~ 1215 (1224)
|+|+++|++++ +...|. +++.
T Consensus 229 ~~g~~~ev~~~-P~~~~~~~ll~ 250 (258)
T d1b0ua_ 229 EEGDPEQVFGN-PQSPRLQQFLK 250 (258)
T ss_dssp EEECHHHHHHS-CCSHHHHHHHH
T ss_pred EEcCHHHHHhC-CCCHHHHHHHh
Confidence 99999999987 344444 4443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.1e-49 Score=432.46 Aligned_cols=207 Identities=28% Similarity=0.428 Sum_probs=189.3
Q ss_pred ccEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
|.=.++||+|.-+ +++++||+||||||||||+++|+|+++|++|+|.++| +|+||+|++++|++
T Consensus 48 g~pvL~~isl~i~---~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 48 GNPVLKNINLNIE---KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPG 111 (281)
T ss_dssp TCEEEEEEEEEEC---TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSE
T ss_pred CCeEEeCeEEEEc---CCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCc
Confidence 4456889999874 5789999999999999999999999999999999998 59999999999999
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 406 SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 406 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
||+|||.||.. .+..++.++++.+++++++..+|+|++|.++++|.+|||||||||+|||||+++|+|||||||||+||
T Consensus 112 tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD 190 (281)
T d1r0wa_ 112 TIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190 (281)
T ss_dssp EHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred eeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCC
Confidence 99999999864 56778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHcCCCeEEEEeCCcchhhccCEEEEEeCceEEeecChHHHHhhccCCCchHHHHH
Q 047171 486 AESERIVQEA-LDQASQGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSHDVLMQMNNGEGGAYSKMV 553 (1224)
Q Consensus 486 ~~~~~~i~~~-l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~~~~y~~~~ 553 (1224)
+.+++.+.+. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++. ++.|.+.+
T Consensus 191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~----~~~~~~~~ 255 (281)
T d1r0wa_ 191 VFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL----RPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc----CcHHHHHH
Confidence 9998888765 4555678999999999999999999999999999999999999987 56676543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.3e-48 Score=415.30 Aligned_cols=219 Identities=26% Similarity=0.416 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHH-hcc
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKL-RSC 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~ 1055 (1224)
-|+++|++++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+...+.+.. |..
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 589999999995 4569999999999999999999999999999999999999999999999999999988876 445
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC-CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE-VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK 1133 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~-~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~ 1133 (1224)
++|+||++.+|+ .|++||+.++.. ....++..+.++.+ .+. + .+++........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~---~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSL---F-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHH---C-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH--HHH---h-hChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 999999999997 599999987642 22223333332221 111 1 123333445556799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|+||||||||++||+.+.+.|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|++.|+++|++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999875 57999999999999866 999999999999999999999874
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-47 Score=411.98 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=188.2
Q ss_pred ccEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcc
Q 047171 976 GFIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 976 g~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
|.|+++|++++|. +.+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+.+ ..+.+|++
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 5699999999996 4579999999999999999999999999999999999999999999999999987 56788999
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCC--CCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHc
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKE--VATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVL 1132 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~--~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll 1132 (1224)
++||||++.+|. .|++||+.+... ..+.+++++..+.+ .+.. |++....+...+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~-----~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH-----CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH--HHhC-----CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 999999998886 599999976531 23455555443322 1111 3444445556679999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
.+|+||||||||++||+.+.+.|++.|++.. +|+|+|++||+++.+.. ||||+||++|+|++.|||+||.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999998875 68999999999999986 999999999999999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.5e-47 Score=405.00 Aligned_cols=207 Identities=26% Similarity=0.403 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 327 EIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+|+..++.. |++||||
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEE
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEE
Confidence 47888888888643 46789999999999999999999999999999999999999988754 5689999
Q ss_pred cCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 047171 397 NQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPK 473 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ 473 (1224)
||++.||+. ||+||+.|+.. ..+.++..+. +.+.++.+ |++...+..+.+||||||||++|||||+.+|+
T Consensus 84 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 84 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred eechhhcccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhccCCC
Confidence 999999965 99999999754 3344443332 34556666 67778889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 474 ILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 474 ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
|||||||||+||+.+...+++.+.++. .|+|+|+|||+++.+.. ||||++|++|+|+++|+++|+.+++
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999998863 38999999999999976 9999999999999999999998763
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-47 Score=403.42 Aligned_cols=196 Identities=31% Similarity=0.511 Sum_probs=168.7
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc-cHH
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST-SIK 408 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 408 (1224)
++||||.- ++++++||+||||||||||+++|+|+++|++|+|+++|+|+.+++.. |++||||+|++.||+. ||+
T Consensus 16 L~~vs~~i---~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 16 LDNLSLKV---ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp EEEEEEEE---CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCCCCTTSCHH
T ss_pred EeeeEEEE---CCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--HhcceeeccccccCccccHH
Confidence 44444443 36789999999999999999999999999999999999999988765 6789999999999965 999
Q ss_pred HHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 409 ENILIGKP---GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 409 ~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
||+.|+.. ....+++.++++ .+ |+.......+.+||||||||++|||||+.+|+|||||||||+||
T Consensus 91 enl~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD 159 (229)
T d3d31a2 91 KNLEFGMRMKKIKDPKRVLDTAR---------DL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (229)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHH---------HT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred HHHHHHHhhccccHHHHHHHHHH---------Hh--cchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCC
Confidence 99998642 123344444433 33 55556677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 486 AESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 486 ~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+...+++.+.++. .|.|+|+|||+++++.. ||||++|++|+|++.|+++|++++
T Consensus 160 ~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999998863 48999999999999877 999999999999999999999876
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-47 Score=415.56 Aligned_cols=217 Identities=22% Similarity=0.427 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhc-c
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRS-C 1055 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~-~ 1055 (1224)
-|+++||+++|+ +.+||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...++++.++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 489999999996 456999999999999999999999999999999999999999999999999999999988654 5
Q ss_pred eEEEecCCCCCc-ccHHHHHccCCCC---------------CCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCCh
Q 047171 1056 IALVSQEPTLFA-GTIRQNIVYGKEV---------------ATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSG 1119 (1224)
Q Consensus 1056 i~~V~Qdp~LF~-gTIreNl~~~~~~---------------~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSG 1119 (1224)
|+++||+|.+|. .|++|||.++... ..+++..+. +.+.+..+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK-----AFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHH-----HHHHHHhc--CcchhccCchhhCCc
Confidence 999999999885 6999999875211 112222111 11122211 333334445567999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 047171 1120 GQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1120 GQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt 1197 (1224)
|||||++|||||+.+|++|||||||++||+.+.+.|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999998874 68999999999999866 99999999999999999
Q ss_pred hhHHhh
Q 047171 1198 QSSLLS 1203 (1224)
Q Consensus 1198 ~~eLl~ 1203 (1224)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHhh
Confidence 999765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.3e-47 Score=403.22 Aligned_cols=220 Identities=28% Similarity=0.445 Sum_probs=184.6
Q ss_pred EEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceE
Q 047171 978 IELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIA 1057 (1224)
Q Consensus 978 I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1057 (1224)
+++ ++..+|.+ . .+ ||||++. ||.+||+||||||||||+++|.|+++|++|+|.+||+|+.++++. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 455 56777742 2 24 8999995 689999999999999999999999999999999999999988765 78999
Q ss_pred EEecCCCCCc-ccHHHHHccCCCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCC
Q 047171 1058 LVSQEPTLFA-GTIRQNIVYGKEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPM 1136 (1224)
Q Consensus 1058 ~V~Qdp~LF~-gTIreNl~~~~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ 1136 (1224)
||||+|.+|. .||+|||.++....+..+.++- +.+.++.+ |+.........+||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHH-----HHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 9999999996 5999999998655555444321 12333332 45455556667899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchhHHH
Q 047171 1137 ILLLDEATSALDSASENLVQEALEKMMV--GRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSMGNGGAYYSL 1213 (1224)
Q Consensus 1137 ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~~~~g~y~~l 1213 (1224)
|||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|+++|+++|+++. ++...+++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~-~~~~v~~f 225 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA-KNGEVAEF 225 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CCSSHHHH
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcC-CCHHHHHH
Confidence 9999999999999999999999988753 8899999999999876 999999999999999999999986 46655555
Q ss_pred H
Q 047171 1214 I 1214 (1224)
Q Consensus 1214 ~ 1214 (1224)
+
T Consensus 226 l 226 (240)
T d2onka1 226 L 226 (240)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-47 Score=404.91 Aligned_cols=206 Identities=28% Similarity=0.421 Sum_probs=143.8
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+++.+.+.. |++|||||
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEEC
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeeec
Confidence 4566666666532 46789999999999999999999999999999999999999887754 57899999
Q ss_pred CCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 398 QEPILFST-SIKENILIGKPG--ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
|+|.||+. ||+||+.|+... .+.++.. ..+.+.++.+ |+.......+.+||||||||++|||||+.+|++
T Consensus 79 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 79 QSYALYPHLSVAENMSFGLKLAGAKKEVIN-----QRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp SSCCC---------------------CHHH-----HHHHHHHHHC-----------------------CHHHHHHTCCSE
T ss_pred cccccccchhHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999966 999999997531 1222222 1234455555 455556777889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 475 LLLDEATSALDAESERIVQEALDQA--SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
||||||||+||+.+.+.+++.|.++ ..|+|+|+|||+++++.. ||||++|++|+|++.|+++|+++++
T Consensus 152 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 9999999999999999999999885 358999999999999987 9999999999999999999999763
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-47 Score=403.21 Aligned_cols=196 Identities=30% Similarity=0.442 Sum_probs=163.0
Q ss_pred EEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHH----hcccEEecCCCCCCcc
Q 047171 330 FKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWL----RSQMGLVNQEPILFST 405 (1224)
Q Consensus 330 ~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 405 (1224)
++||||.. ++|+++||+||||||||||+++|+|+++|++|+|++||+++..++...+ |++||||+|+|.||+.
T Consensus 21 l~~isl~i---~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~ 97 (230)
T d1l2ta_ 21 LKNVNLNI---KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (230)
T ss_dssp EEEEEEEE---CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred EeceEEEE---cCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcC
Confidence 45555554 3577999999999999999999999999999999999999999987664 4579999999999866
Q ss_pred -cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhccccccc-cccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 047171 406 -SIKENILIGK-----PGASMETVVKAAQAANVHDFIMKLNDGYET-KVGQFGVQLSGGQKQRIAIARALIRDPKILLLD 478 (1224)
Q Consensus 406 -ti~~ni~~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq~qriaiARal~~~~~ililD 478 (1224)
||+||+.++. +..+.++..+. +.+.++.+ |+.. .....+.+|||||||||+|||||+.+|+|||||
T Consensus 98 ~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 98 LTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp SCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ccHHHHHhHHHHHhccCCCCHHHHHHH-----HHHHHHhh--chhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 9999999753 23333333222 22334443 4433 346678899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhccCEEEEEeCceEEeecCh
Q 047171 479 EATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRKADLIGVLQSGRVIESGSH 535 (1224)
Q Consensus 479 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g~~ 535 (1224)
||||+||+.++..+++.|.++. .|+|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999863 48999999999998878999999999999998853
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.7e-47 Score=404.10 Aligned_cols=208 Identities=29% Similarity=0.452 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCC------------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC---HHHHhcc
Q 047171 328 IEFKDVDFSYPTR------------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ---LKWLRSQ 392 (1224)
Q Consensus 328 i~~~~v~f~y~~~------------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 392 (1224)
|+++||+++|+.. +++++++|+||||||||||+++|.|+++|++|+|+++|+++...+ ....|++
T Consensus 4 i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ 83 (242)
T d1oxxk2 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83 (242)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSC
T ss_pred EEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhcc
Confidence 5566666666321 357899999999999999999999999999999999999997655 3456788
Q ss_pred cEEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhc
Q 047171 393 MGLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALI 469 (1224)
Q Consensus 393 i~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~ 469 (1224)
||||+|+|.||+. ||+|||.|+.. ..+.++..+. +.+.++.+ |++.....++.+||||||||++|||||+
T Consensus 84 ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARaL~ 156 (242)
T d1oxxk2 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALV 156 (242)
T ss_dssp EEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred ceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHH-----HHHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhHHh
Confidence 9999999999976 99999999754 2333333322 33455555 6777778889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 470 RDPKILLLDEATSALDAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
.+|+|||||||||+||+.+...+++.++++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+++
T Consensus 157 ~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred hcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998863 38999999999999866 9999999999999999999998763
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-46 Score=401.96 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=175.6
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH----Hhccc
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW----LRSQM 393 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~----~r~~i 393 (1224)
|+++||+++|++. +++++++|+||||||||||+++|+|+++|++|+|.++|+++...+... .|++|
T Consensus 4 i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~i 83 (240)
T d1g2912 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccc
Confidence 6777777777543 367899999999999999999999999999999999999997765433 36789
Q ss_pred EEecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc
Q 047171 394 GLVNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR 470 (1224)
Q Consensus 394 ~~v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~ 470 (1224)
|||+|+|.||+. ||+||+.++.. ..+.++..+. +.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 84 g~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~-----v~~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAraL~~ 156 (240)
T d1g2912 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVR 156 (240)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred eecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 99999998632 2334443322 22334444 55556678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
+|+||||||||++||+.+...+++.++++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|++.++
T Consensus 157 ~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P 231 (240)
T d1g2912 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (240)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999998863 3 8999999999999977 9999999999999999999998763
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-46 Score=400.20 Aligned_cols=203 Identities=33% Similarity=0.566 Sum_probs=171.0
Q ss_pred EEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHH---HhcccEEecCCCCCCcc
Q 047171 329 EFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKW---LRSQMGLVNQEPILFST 405 (1224)
Q Consensus 329 ~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r~~i~~v~Q~~~lf~~ 405 (1224)
.++||||.. ++++++||+||||||||||+++|.|+.+|++|+|.++|+|+..++.+. +|++||||||++.+|+.
T Consensus 20 al~~vsl~i---~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~ 96 (240)
T d3dhwc1 20 ALNNVSLHV---PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (240)
T ss_dssp EEEEEEEEE---CSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred EeeceeEEE---cCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCC
Confidence 355666654 357799999999999999999999999999999999999999888654 56789999999999976
Q ss_pred -cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 047171 406 -SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATS 482 (1224)
Q Consensus 406 -ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts 482 (1224)
||+|||.++.. ..+.++..+. +.+.++.+ |++......+.+||||||||++|||||+.+|++||||||||
T Consensus 97 ~tv~eni~~~l~~~~~~~~~~~~~-----v~~~L~~v--gL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~ 169 (240)
T d3dhwc1 97 RTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169 (240)
T ss_dssp SBHHHHHHHHHHTTTCCTTHHHHH-----HHHHHHHH--STTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGG
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccc
Confidence 99999988521 2222222221 22334444 55556777889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-C-CCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 483 ALDAESERIVQEALDQAS-Q-GRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 483 ~lD~~~~~~i~~~l~~~~-~-~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||+.+...+++.|.++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 170 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~ 231 (240)
T d3dhwc1 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231 (240)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred cCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999998863 3 8999999999999987 999999999999999999999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.1e-45 Score=392.26 Aligned_cols=203 Identities=31% Similarity=0.512 Sum_probs=178.0
Q ss_pred ccEEEEeEEEECCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcc
Q 047171 326 GEIEFKDVDFSYPTRPDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFST 405 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 405 (1224)
|+..+ ||+|.-+ +++++|+||||||||||+++|+|+++|++|+|.++|+|+.++++. |++||||||++.||+.
T Consensus 12 g~~~~-~vs~~~~----~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ 84 (240)
T d2onka1 12 GNFRL-NVDFEMG----RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84 (240)
T ss_dssp TTEEE-EEEEEEC----SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTT
T ss_pred CCEEE-EEEEEeC----CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhccc
Confidence 45555 7888763 258999999999999999999999999999999999999988754 6789999999999975
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 047171 406 -SIKENILIGKPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSAL 484 (1224)
Q Consensus 406 -ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~l 484 (1224)
||+|||.|+....+.++..+ .+.+.++.+ |+.......+.+||||||||++|||||+.+|+|||||||||+|
T Consensus 85 ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~L 157 (240)
T d2onka1 85 LSVYRNIAYGLRNVERVERDR-----RVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCHHHHHHTTCTTSCHHHHHH-----HHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred chhhHhhhhhhcccCHHHHHH-----HHHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccC
Confidence 99999999865555544332 234566666 7777888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhhc
Q 047171 485 DAESERIVQEALDQAS--QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQMN 542 (1224)
Q Consensus 485 D~~~~~~i~~~l~~~~--~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 542 (1224)
|+.+...+++.++++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++.+
T Consensus 158 D~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence 9999999999998863 38999999999999877 9999999999999999999999763
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-44 Score=390.32 Aligned_cols=208 Identities=32% Similarity=0.546 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCC------------
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQ------------ 385 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~------------ 385 (1224)
|+++||+++|++. .+++++||+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~ 82 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 82 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHh
Confidence 6677777777542 367899999999999999999999999999999999999996543
Q ss_pred -HHHHhcccEEecCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhcccccccc-ccCCCCCCChHHH
Q 047171 386 -LKWLRSQMGLVNQEPILFST-SIKENILIGK---PGASMETVVKAAQAANVHDFIMKLNDGYETK-VGQFGVQLSGGQK 459 (1224)
Q Consensus 386 -~~~~r~~i~~v~Q~~~lf~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~ 459 (1224)
....|++||||||+|.+|+. ||.||+.++. ...+.++..+. +.+.++.+ |+... ....+.+||||||
T Consensus 83 ~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~p~~LSGG~~ 155 (258)
T d1b0ua_ 83 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAKV--GIDERAQGKYPVHLSGGQQ 155 (258)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHT--TCCHHHHTSCGGGSCHHHH
T ss_pred HHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhccCcccccHHHH
Confidence 23577899999999999975 9999998762 23344333322 23344544 44333 2445788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHH
Q 047171 460 QRIAIARALIRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDV 537 (1224)
Q Consensus 460 qriaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~ 537 (1224)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||||+||++|+|++.|+++|
T Consensus 156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~e 235 (258)
T d1b0ua_ 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235 (258)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999998764 68999999999999976 99999999999999999999
Q ss_pred HHhhc
Q 047171 538 LMQMN 542 (1224)
Q Consensus 538 l~~~~ 542 (1224)
++.++
T Consensus 236 v~~~P 240 (258)
T d1b0ua_ 236 VFGNP 240 (258)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 99864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.2e-44 Score=383.95 Aligned_cols=208 Identities=25% Similarity=0.437 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHh-cccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLR-SQMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~i~~v 396 (1224)
|+++||+++|++. ++++++||+||||||||||+++|+|+++|++|+|.++|+|+...+.+..+ ..|+|+
T Consensus 7 Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~ 86 (240)
T d1ji0a_ 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhccccc
Confidence 6777777777542 36789999999999999999999999999999999999999998877654 469999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 047171 397 NQEPILFST-SIKENILIGKPGA-SMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKI 474 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~i 474 (1224)
||++.+|+. ||+||+.++.... ..++..+..+. .+..+ .+++....+.+.+||||||||++|||||+.+|++
T Consensus 87 ~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l 160 (240)
T d1ji0a_ 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-----IFSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHH-----HHHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHH-----HHHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 999999976 9999998864321 22222222221 11111 1344456677889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 475 LLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 475 lilDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
|||||||++||+.+...+.+.++++ .+|+|+|+|||+++.+.. ||||+||++|+|+++|+++|+.++
T Consensus 161 LllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred eeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999886 468999999999999876 999999999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-43 Score=385.57 Aligned_cols=207 Identities=23% Similarity=0.358 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhc-ccEEe
Q 047171 328 IEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRS-QMGLV 396 (1224)
Q Consensus 328 i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v 396 (1224)
|+++|||++|++. ++++++||+||||||||||+++|+|+++|++|+|+++|+|+...++...++ .|+||
T Consensus 5 L~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v 84 (254)
T d1g6ha_ 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 84 (254)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCcc
Confidence 6777777777643 367899999999999999999999999999999999999999998877654 59999
Q ss_pred cCCCCCCcc-cHHHHHhcCCCC---------------CCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHH
Q 047171 397 NQEPILFST-SIKENILIGKPG---------------ASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQ 460 (1224)
Q Consensus 397 ~Q~~~lf~~-ti~~ni~~g~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~q 460 (1224)
||+|.+|+. ||+||+.+|... ...++.. ..+.+.++.+ |++........+|||||||
T Consensus 85 ~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~Q 157 (254)
T d1g6ha_ 85 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGGQMK 157 (254)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHH-----HHHHHHHHhc--CcchhccCchhhCCcHHHH
Confidence 999998865 999999987321 0111111 1223344444 5566667778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHH
Q 047171 461 RIAIARALIRDPKILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVL 538 (1224)
Q Consensus 461 riaiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l 538 (1224)
|++|||||+.+|++|||||||++||+.+.+.+.+.++++ .+|+|+|+|||+++.+.. ||||+||++|+|+++|+++|+
T Consensus 158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~ 237 (254)
T d1g6ha_ 158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237 (254)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred HHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHH
Confidence 999999999999999999999999999999999999876 468999999999999976 999999999999999999998
Q ss_pred Hhh
Q 047171 539 MQM 541 (1224)
Q Consensus 539 ~~~ 541 (1224)
.++
T Consensus 238 ~~~ 240 (254)
T d1g6ha_ 238 IKN 240 (254)
T ss_dssp HHH
T ss_pred hhc
Confidence 654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.5e-43 Score=377.62 Aligned_cols=208 Identities=23% Similarity=0.386 Sum_probs=177.9
Q ss_pred ccEEEEeEEEECCCC----------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 326 GEIEFKDVDFSYPTR----------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 326 ~~i~~~~v~f~y~~~----------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
|.|+++|++++|+++ ++++++||+||||||||||+++|+|+++|++|+|.++|+|+.+. ...+|+.+||
T Consensus 1 gaI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i~~ 79 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISY 79 (238)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTEEE
T ss_pred CCEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhEeE
Confidence 457788888888643 46789999999999999999999999999999999999999874 5678899999
Q ss_pred ecCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 396 VNQEPILFST-SIKENILIGKP--GASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 396 v~Q~~~lf~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|||++.+|+. |+.||+.|... ..+.+++.+..+ ..++.+ |++....++..+||||||||++|||||+.+|
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE-----RATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998866 99999976431 223444443332 223333 5667778888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 473 KILLLDEATSALDAESERIVQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+||||||||++||+.+.+.+++.++++ .+|+|+|++||+++++.. ||||++|++|+|++.|+++|+.++
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999886 468999999999999987 999999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-43 Score=376.98 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=182.5
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+...+.+.++.+.
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 47999997655 699999999999999999999999999999999986 6899999999999999999999999
Q ss_pred EEEecCCC-CCcccHHHHHccCCCCCC-HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHcc-
Q 047171 1057 ALVSQEPT-LFAGTIRQNIVYGKEVAT-EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLK- 1133 (1224)
Q Consensus 1057 ~~V~Qdp~-LF~gTIreNl~~~~~~~~-deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~- 1133 (1224)
+|++|+.. .|..++.+|+.++....+ .+.+.++++..+ ++..++....+||||||||++|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA-----------LDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTT-----------CTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcC-----------CHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence 99999986 577899999987755433 344555554443 4445556667899999999999999997
Q ss_pred ------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 047171 1134 ------NPMILLLDEATSALDSASENLVQEALEKMM-VGRTCVVVAHRLSTIQK-ADNIVVIKNGKVVEQGTQSSLLSM 1204 (1224)
Q Consensus 1134 ------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-aD~I~vl~~G~Ive~Gt~~eLl~~ 1204 (1224)
+|+|||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|+|++.|+++|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 679999999999999999999999999864 68999999999998765 999999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.1e-40 Score=348.16 Aligned_cols=191 Identities=21% Similarity=0.334 Sum_probs=159.0
Q ss_pred cEEEEEEEEECCCCCCccceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcce
Q 047171 977 FIELKNVFFSYPSRPDQMIFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCI 1056 (1224)
Q Consensus 977 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1056 (1224)
.|+++|++|+|+ .+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++. .+|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcE
Confidence 489999999994 36999999999999999999999999999999999999999999999999875 468899
Q ss_pred EEEecCCCCCc-ccHHHHHccC----CCCCCHHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHH
Q 047171 1057 ALVSQEPTLFA-GTIRQNIVYG----KEVATEAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAV 1131 (1224)
Q Consensus 1057 ~~V~Qdp~LF~-gTIreNl~~~----~~~~~deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAl 1131 (1224)
+|+||++.++. -|+.+|+.+. ....+++++.++++..++. +++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------cccccc----CcCCCcHHHHHHHHHHH
Confidence 99999998875 5899998642 2345677887776654432 133333 46999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 047171 1132 LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVVIKN 1189 (1224)
Q Consensus 1132 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~vl~~ 1189 (1224)
+++|+++||||||++||+++++.+++.|.+..+++++++|+|+. .+..||++.+|++
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999999877555445455442 3457999998853
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-39 Score=345.48 Aligned_cols=189 Identities=24% Similarity=0.408 Sum_probs=164.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCC-CCcccHHHHHhcCCCCCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPI-LFSTSIKENILIGKPGAS 419 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~~ti~~ni~~g~~~~~ 419 (1224)
.+|+++||+||||||||||+++|+|++ |++|+|.++|+++..++...++...+|++|+.. .|..++.+|+.++..+..
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT 101 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhh
Confidence 367899999999999999999999976 689999999999999999999999999999875 467799999998765443
Q ss_pred -HHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhcc-------CCCEEEEeCCCCCCCHHHHHH
Q 047171 420 -METVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIR-------DPKILLLDEATSALDAESERI 491 (1224)
Q Consensus 420 -~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~-------~~~ililDE~ts~lD~~~~~~ 491 (1224)
.+.+.++++ .+ |++..++++..+||||||||++|||||++ +|+|||||||||+||+.+...
T Consensus 102 ~~~~~~~~~~---------~~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~ 170 (231)
T d1l7vc_ 102 RTELLNDVAG---------AL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170 (231)
T ss_dssp CHHHHHHHHH---------HT--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred HHHHHHHHHH---------hc--CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 333333333 23 55666788888999999999999999997 779999999999999999999
Q ss_pred HHHHHHHH-cCCCeEEEEeCCcchhhc-cCEEEEEeCceEEeecChHHHHhh
Q 047171 492 VQEALDQA-SQGRTMIIIAHRLSTIRK-ADLIGVLQSGRVIESGSHDVLMQM 541 (1224)
Q Consensus 492 i~~~l~~~-~~~~t~i~i~H~l~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 541 (1224)
+.+.++++ .+|+|+|++||+++.+.. ||||++|++|+|++.|+++|++..
T Consensus 171 i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 171 LDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp HHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 99999886 479999999999998765 999999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.5e-36 Score=314.39 Aligned_cols=182 Identities=21% Similarity=0.408 Sum_probs=141.6
Q ss_pred cEEEEeEEEECCCC---------CCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEec
Q 047171 327 EIEFKDVDFSYPTR---------PDTPTIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVN 397 (1224)
Q Consensus 327 ~i~~~~v~f~y~~~---------~~~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 397 (1224)
.|+++|+||+|+.. ++|+++||+||||||||||+++|+|+++|++|+|.+||+++.. .|.+++|+|
T Consensus 2 ~lev~~ls~~y~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~~ 76 (200)
T d1sgwa_ 2 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLP 76 (200)
T ss_dssp EEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEEC
T ss_pred eEEEEEEEEEeCCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEEe
Confidence 36778888887521 3577999999999999999999999999999999999999864 577899999
Q ss_pred CCCCCCcc-cHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCC
Q 047171 398 QEPILFST-SIKENILIG----KPGASMETVVKAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDP 472 (1224)
Q Consensus 398 Q~~~lf~~-ti~~ni~~g----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~ 472 (1224)
|++.++.. |++||+.+. ....+.+++.++.+..++ + + +.++..+||||||||++|||||+.+|
T Consensus 77 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~----~~~~~~~LSgG~~qrv~ia~al~~~~ 144 (200)
T d1sgwa_ 77 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--D----LKKKLGELSQGTIRRVQLASTLLVNA 144 (200)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--C----TTSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCC------c--c----cccccCcCCCcHHHHHHHHHHHhcCC
Confidence 99988765 999998643 123456666555443221 1 1 23455679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEEEeC
Q 047171 473 KILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGVLQS 526 (1224)
Q Consensus 473 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~vl~~ 526 (1224)
+++||||||++||+++++.+.+.+.+..+++++++|+|+ +.+..||++.+|.+
T Consensus 145 ~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 145 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe-chhhhcchhhheee
Confidence 999999999999999999999998876543333444443 23456999988753
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=4.3e-29 Score=282.98 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=274.5
Q ss_pred CcchHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ChHHHHHH----HH----H---HHHHHHH
Q 047171 1 MGTKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTS-DISISIEA----VD----K---VPEKGMC 68 (1224)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~----~~----~---~~~~~~~ 68 (1224)
|+.++|+++|.+|+++ .+++++++.++.+++.+..|++++.++|..... +...+... +. . .+++.++
T Consensus 1 Wk~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp CHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 6789999999988755 566777888888888899999999999976443 33222210 00 0 0667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047171 69 WTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILVAFLLS 148 (1224)
Q Consensus 69 ~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1224)
..+.+.++..++|.++++|++++|.++|++ + ++|++++|+++|++.+++.+...+..++..+..++++++++++++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~---~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDK---Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 155 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHH---S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhccccchhhHHHHhhcccchhhccc---c-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhh
Confidence 889999999999999999999999999999 5 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 047171 149 WRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNMELGIKQ 228 (1224)
Q Consensus 149 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~~~~~~ 228 (1224)
|.+++++++.+|+..++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047171 229 GLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIFEMIDR 307 (1224)
Q Consensus 229 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~ 307 (1224)
.+..+...+.. .+..++.++++++|++++.+|.+|+|++++++.+......|+..+...++.++++.+|++|++|++|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 236 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99888888777 77777788889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 047171 308 VPV 310 (1224)
Q Consensus 308 ~~~ 310 (1224)
|||
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.2e-28 Score=280.10 Aligned_cols=303 Identities=16% Similarity=0.126 Sum_probs=269.0
Q ss_pred chHHHHhhccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC---hH-HHHH---HH-----HH-------HH
Q 047171 3 TKGGLFRYADGKDKLLLLFGTVGSIGDGMMTPLTMYILSMVINELGTSD---IS-ISIE---AV-----DK-------VP 63 (1224)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~-~~~~---~~-----~~-------~~ 63 (1224)
++||+++|.+|+++ .+++++++.++.+++..+.|++++.++|.+.... .. .... .+ .. .+
T Consensus 1 mlKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (323)
T d2hyda2 1 MIKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEF 79 (323)
T ss_dssp CHHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999998755 5567777778888888888999999999875431 11 1000 00 00 05
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047171 64 EKGMCWTRTAERQASRIRMEYLKSVLRQEVGFFDNQTSSSSTFQVVTNITSDAHSIQDAVAEKIPNCLAHLTSFIGSILV 143 (1224)
Q Consensus 64 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (1224)
++.++..+.+.++..++|.++++|++++|.+||++ + ++|++++|+++|++.+++.+...+..++..+..+++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~---~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 155 (323)
T d2hyda2 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN---N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT---S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhccccccccc---c-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhh
Confidence 56777888999999999999999999999999998 5 9999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHH
Q 047171 144 AFLLSWRLALAALPFSLLFIVPGIVFGKVLKDLGAQGKDAYEAAGGIAEQAISSIRTVYSFVGEHQTLKRFSLALRKNME 223 (1224)
Q Consensus 144 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~vk~~~~e~~~~~~~~~~~~~~~~ 223 (1224)
+++++|.+++++++++|+..++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+
T Consensus 156 l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~ 235 (323)
T d2hyda2 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT 235 (323)
T ss_dssp HHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 224 LGIKQGLTKGLLLGSM-GMTYGAWAFQSWVGSVLVTERGEKGGLVFVAGICTILGGVGIMSALPNLSFISQATTAATRIF 302 (1224)
Q Consensus 224 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~ 302 (1224)
...+..+..+...+.. .+..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++.+|++|++
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~ 315 (323)
T d2hyda2 236 RALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVF 315 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888887777 777778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCC
Q 047171 303 EMIDRVPV 310 (1224)
Q Consensus 303 ~~l~~~~~ 310 (1224)
|++|++||
T Consensus 316 elLd~e~e 323 (323)
T d2hyda2 316 QLIDEDYD 323 (323)
T ss_dssp HHHTCCCS
T ss_pred HHHCCCCC
Confidence 99997663
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=5.8e-24 Score=240.22 Aligned_cols=317 Identities=15% Similarity=0.232 Sum_probs=289.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 637 SSLLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSETRLYCLIFLGLAFLTLIANLIQHY 716 (1224)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 716 (1224)
..+++++++.++.++.+++++++.++.+++.+..|++++.+++......+ ......+.+.++++.++..++.+++.+
T Consensus 2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~ 78 (319)
T d3b60a2 2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY 78 (319)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 45778888888889998888888888888999999999998886543221 122333456677778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 717 NFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLVTW 796 (1224)
Q Consensus 717 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1224)
.....+.++..++|++++++++++|+++|+ ++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccccchhhHHHHhhcccchhhcc--ccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhc
Confidence 999999999999999999999999999999 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHHHH
Q 047171 797 RVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIKQS 876 (1224)
Q Consensus 797 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 876 (1224)
.+++++++.+|+.........+...+..++.++..++..+.+.|.+.|+++||+|+.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999998888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 047171 877 WFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILDRK 956 (1224)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 956 (1224)
...........++..+..++++++|++++..|.+|+|++++++.+......|+..+...+.++.++..+.+|+.+++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CC
Q 047171 957 SE 958 (1224)
Q Consensus 957 ~~ 958 (1224)
+|
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
Confidence 65
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.2e-23 Score=238.23 Aligned_cols=318 Identities=9% Similarity=0.131 Sum_probs=281.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCchhhhhh----HHHHHHHHHHHHHHHHHHHHHH
Q 047171 639 LLRLLRMSAIEWKRTLLGCLGSAGSGAIYPSYAYCLGSVVSAYFIKDDSKLKSE----TRLYCLIFLGLAFLTLIANLIQ 714 (1224)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 714 (1224)
+++++++.++.++.++.++++.++.+++....|++++.+++............. ....+..++++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888899999999987765422111111 1112233445566677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047171 715 HYNFAIMGEHLVQRVREKMLEKIFTFEIGWFDQDENTSAAICARLANEAHLVRSFIADRMSLLIQVFFSASLAYTLSLLV 794 (1224)
Q Consensus 715 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~g~l~~rls~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1224)
.++..+.+.++..++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhcccccccc--cccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999 6789999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHhccHHHHHHHHHHHhhhHHHHHHH
Q 047171 795 TWRVAIVMIAVQPLNIGCFYSRSVLMKSMSEKAKKSQSEGSQLASEATTNHRTITAFSSQDRILDLFRETMKGPKKESIK 874 (1224)
Q Consensus 795 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 874 (1224)
+|.+++++++..|+.........+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999988889999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047171 875 QSWFSGIGLFSSQFLTTASITLTFWYAGRIMNQGLVSPKQLFQAFFLLMSTGKNIADAGSMTSDIAKGSSAIRTIFTILD 954 (1224)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 954 (1224)
..............+..+..++++++|++++.+|.+|+|+++++..+......|+..+...+.++.++..+++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999998
Q ss_pred cCCC
Q 047171 955 RKSE 958 (1224)
Q Consensus 955 ~~~~ 958 (1224)
+++|
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7553
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.67 E-value=1.4e-18 Score=179.03 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=110.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~ 1087 (1224)
|++|+||+|||||||++.|+|+++|..|.+.++|.+....+...........++.+.++..+..++...++...+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcch--
Confidence 699999999999999999999999999999999877654433322233333444444444444333333221111111
Q ss_pred HHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CC
Q 047171 1088 KAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALEKMM--VG 1165 (1224)
Q Consensus 1088 ~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~ 1165 (1224)
..+|+|++||.++++++.++|++|++|||+...+. .....+.+.+.. .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred ---------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCC
Confidence 13789999999999999999999999998655432 233344444433 36
Q ss_pred CeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 047171 1166 RTCVVVAHRLSTIQKADNIVVIKNGKVVEQGT 1197 (1224)
Q Consensus 1166 ~TvI~IaHrl~ti~~aD~I~vl~~G~Ive~Gt 1197 (1224)
+|+|+++|+.+....||++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 89999999988878899999999999998754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.63 E-value=8.6e-18 Score=172.90 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVV 424 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~ 424 (1224)
+++|+||||||||||++.|+|+++|+.|.+.++|.+....+............+.+.++..+..++..+++.....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc---
Confidence 58999999999999999999999999999999887654332211111122223333333333333322222111111
Q ss_pred HHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC--HHHHHHHHHHHHHHcCC
Q 047171 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD--AESERIVQEALDQASQG 502 (1224)
Q Consensus 425 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD--~~~~~~i~~~l~~~~~~ 502 (1224)
...+|+|++||.++++++..+|+++++|||....+ .+....+.+.++ ..+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~--~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH--DPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT--CTT
T ss_pred --------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc--cCC
Confidence 12478999999999999999999999999865543 222333333331 236
Q ss_pred CeEEEEeCCcchhhccCEEEEEeCceEEeec
Q 047171 503 RTMIIIAHRLSTIRKADLIGVLQSGRVIESG 533 (1224)
Q Consensus 503 ~t~i~i~H~l~~~~~ad~i~vl~~G~i~~~g 533 (1224)
.|+|+++|+.+....+|++..+++|++++-+
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 8999999998877789999999999998764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.1e-10 Score=136.16 Aligned_cols=73 Identities=25% Similarity=0.335 Sum_probs=62.2
Q ss_pred CCCChHHHHHHHHHHHH----ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEE
Q 047171 1115 VQLSGGQKQRIALARAV----LKNPMILLLDEATSALDSASENLVQEALEKMMV-GRTCVVVAHRLSTIQKADNIVVI 1187 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAl----l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~aD~I~vl 1187 (1224)
..||||||.+++||-.+ ..++||++||||+++||+.....+.+.|++... +.-+|+|||+..++..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 46799999998776432 467899999999999999999999999987753 44599999999999999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=5.6e-10 Score=124.17 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=66.7
Q ss_pred CCCChHHHHHHHHHHH----hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCEEEE--Ee
Q 047171 452 VQLSGGQKQRIAIARA----LIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADLIGV--LQ 525 (1224)
Q Consensus 452 ~~LSgGq~qriaiARa----l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~i~v--l~ 525 (1224)
..+|+|||+...++.. ...+|+++++|||-++|+|...+.+.+.|++..++.-+|++||+...+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 4689999999877665 34578999999999999999999999999988888899999999999999999866 55
Q ss_pred Cc
Q 047171 526 SG 527 (1224)
Q Consensus 526 ~G 527 (1224)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=6.8e-10 Score=123.47 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=66.5
Q ss_pred CCCChHHHHHHHHHHHH----ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE--Ee
Q 047171 1115 VQLSGGQKQRIALARAV----LKNPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNIVV--IK 1188 (1224)
Q Consensus 1115 ~~LSGGQrQRlaLARAl----l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I~v--l~ 1188 (1224)
..+|+|||+.+.++..+ ..+++++++|||-++||+...+.+.+.|++..++.=+|++||+...+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 36899999998776653 3467999999999999999999999999999888889999999999999999965 56
Q ss_pred CC
Q 047171 1189 NG 1190 (1224)
Q Consensus 1189 ~G 1190 (1224)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=2e-07 Score=107.76 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCCcchhhccCEEEEE
Q 047171 452 VQLSGGQKQRIAIARAL----IRDPKILLLDEATSALDAESERIVQEALDQAS-QGRTMIIIAHRLSTIRKADLIGVL 524 (1224)
Q Consensus 452 ~~LSgGq~qriaiARal----~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~i~H~l~~~~~ad~i~vl 524 (1224)
..||||||.++++|-.+ ..++|+++||||+++||+.+...+.+.|.+.. .+.-+|+|||+...+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 56799999998876433 56889999999999999999999999998764 345699999999999999998755
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=5.8e-06 Score=82.97 Aligned_cols=161 Identities=13% Similarity=0.030 Sum_probs=80.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCC------CCC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGK------EVA 1081 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~------~~~ 1081 (1224)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+........+.....-+.|+...+.....++..... ...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhccccccccc
Confidence 58999999999999999999999877777766555433222222222233333433222111111111110 111
Q ss_pred CHHHHHHHHHHHhHHHHHHh-cccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 047171 1082 TEAEIRKAAVLANAHEFISS-TEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEATSALDSASENLVQEALE 1160 (1224)
Q Consensus 1082 ~deei~~al~~a~l~~~I~~-lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~ 1160 (1224)
..+++...... ..+.+.. ...+.+..+.+.....+......+.+-+.++..++++++...+..-+.. ..+.+.+.
T Consensus 83 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIR 158 (189)
T ss_dssp CHHHHHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHH
T ss_pred cHHHHHHHHHH--HHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcch--HHHHHHHh
Confidence 22222221100 0011111 1234445555555566777777888888888888766554333322221 12233333
Q ss_pred HhcCCCeEEEEcc
Q 047171 1161 KMMVGRTCVVVAH 1173 (1224)
Q Consensus 1161 ~~~~~~TvI~IaH 1173 (1224)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCeEEEECh
Confidence 2 34566666653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=7.4e-06 Score=82.14 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+.|+||+|||||||++.+.+.+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999999999999887766665443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.00029 Score=70.38 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
|+.+.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987665
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.00068 Score=69.16 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEE
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1038 (1224)
+|++.+++|+||.|||||++.|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5999999999999999999999987666566654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.45 E-value=0.0043 Score=65.93 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=28.2
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
-|+++..-++||+.+.|.|++|+||||++.-++.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4666655589999999999999999999866653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00046 Score=67.53 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
++++|+|++|||||||++-|.+.+..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999876554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.35 E-value=0.0006 Score=67.06 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
.|+.|.|+|++||||||+.+.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5889999999999999999999876532 1355555
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.27 E-value=0.0016 Score=70.79 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=34.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCH
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNL 1049 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~ 1049 (1224)
++.|..+.|+|++||||||++++|+++.+|..=-|.|- |..++.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE--d~~El~l 207 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE--DTEEIVF 207 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE--SSCCCCC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc--chhhhhc
Confidence 45567799999999999999999999998866556663 3344443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.18 E-value=0.0065 Score=62.07 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=32.9
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEccCchhhh
Q 047171 1133 KNPMILLLDEATSALDSASENLVQEALEK-MM-VGRTCVVVAHRLSTIQ 1179 (1224)
Q Consensus 1133 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaHrl~ti~ 1179 (1224)
.+..++|+||.-++=|++.-..+-.++-+ +. .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 34569999999999999755544444433 32 3778999999866543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.00083 Score=65.56 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
.++|+|++|||||||++-|.+.+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999876654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.016 Score=59.45 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHH-HHHHHHH-cC-CCeEEEEeCCcch
Q 047171 471 DPKILLLDEATSALDAESERIV-QEALDQA-SQ-GRTMIIIAHRLST 514 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i-~~~l~~~-~~-~~t~i~i~H~l~~ 514 (1224)
+..++|+||+.++=|+.....+ ...++.+ .+ +..+|+.||..+.
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 4459999999999998765444 4445544 23 3466777776543
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.10 E-value=0.016 Score=58.94 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=32.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH-cCCCeEEEEeCCcchhh
Q 047171 470 RDPKILLLDEATSALDAESERIVQE-ALDQA-SQGRTMIIIAHRLSTIR 516 (1224)
Q Consensus 470 ~~~~ililDE~ts~lD~~~~~~i~~-~l~~~-~~~~t~i~i~H~l~~~~ 516 (1224)
.+..++|+||...+=|++....+.. .++.+ ..+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 3445999999999999976444333 33333 24678999999876543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.08 E-value=0.0083 Score=56.96 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLD 377 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 377 (1224)
.+.|+|++||||||+++.|.... .|...++
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 57899999999999999775432 2555554
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.07 E-value=0.011 Score=57.94 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
++-+.|-++|++||||||+++-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999988754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0016 Score=66.26 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 375 (1224)
+++.+++|+||+|||||+|.|.+......|+|.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 458999999999999999999988777677764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.03 E-value=0.0012 Score=64.96 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
++|-.|.|+|++||||||+.+.|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0015 Score=66.27 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCC--------------CCceEEECCccCCCCCHHHHhcc
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDP--------------QSGSVMVDERNIKSYNLRKLRSC 1055 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--------------~~G~I~idG~di~~~~~~~lR~~ 1055 (1224)
+|..+.|+||||||||||.+.|+..++. -.|+ +||+|..-++.+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHH
Confidence 5899999999999999999988765431 1243 47887777777776554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.011 Score=62.23 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=23.8
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
++.++ .||+.+.|+|++|+||||++.-|+
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 55553 469999999999999999986654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.02 E-value=0.012 Score=59.35 Aligned_cols=93 Identities=27% Similarity=0.393 Sum_probs=48.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSIKENILIGKPGASMETVV 424 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ni~~g~~~~~~~~~~ 424 (1224)
++++|||+|+||||.+-=|+..+. ..| ++|++|.=|.+= . ...|++.
T Consensus 14 vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R-------------~-ga~eQL~ 60 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYR-------------P-AALEQLQ 60 (211)
T ss_dssp EEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSS-------------H-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CceEEEEeeccc-------------c-chhHHHH
Confidence 789999999999987655555443 222 257777665431 0 0112222
Q ss_pred HHHHHhcHHHHHHhccccccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 047171 425 KAAQAANVHDFIMKLNDGYETKVGQFGVQLSGGQKQRIAIARALIRDPKILLLDEATSALD 485 (1224)
Q Consensus 425 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~qriaiARal~~~~~ililDE~ts~lD 485 (1224)
.+-+.+ |......+....+.-=. +=++..+...+.++++.| |++..
T Consensus 61 ---------~~a~~l--~v~~~~~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr~ 106 (211)
T d1j8yf2 61 ---------QLGQQI--GVPVYGEPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGRH 106 (211)
T ss_dssp ---------HHHHHH--TCCEECCTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCSC
T ss_pred ---------Hhcccc--CcceeecccchhhhHHH--HHHHHHhhccCCceEEEe--cCCcC
Confidence 222222 33444444444442222 125666677899999999 77753
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.02 E-value=0.0017 Score=62.08 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
+.|.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 468899999999999999876532 35555544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.02 E-value=0.0054 Score=63.52 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=26.8
Q ss_pred ceeceeE-EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 995 IFKGLTL-KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 995 vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-|+.+=- -+++|..+.|.|++||||||++.-++.-
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3555522 2899999999999999999998655443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.01 E-value=0.0013 Score=65.38 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
|..+.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 467899999999999999999877653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.002 Score=64.04 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.91 E-value=0.0018 Score=63.49 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..|.+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.89 E-value=0.00075 Score=69.05 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccCCCCceEE
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVM 1038 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1038 (1224)
+|++.+++|+||.|||||++.|.+-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998776677775
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.025 Score=58.06 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCEEEEeccCCCCCHHHHHHHH-HHHHHhc-C-CCeEEEEccCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQ-EALEKMM-V-GRTCVVVAHRLST 1177 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~-~~l~~~~-~-~~TvI~IaHrl~t 1177 (1224)
+..++|+||.-++=|++.-..+- ..++.+. + ++.+|+.||-.+.
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 44699999999999987555554 4454443 3 4577787886544
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.017 Score=60.16 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+++...+-+.||+|||||++++.|.+.+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 33445688999999999999999998764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.75 E-value=0.0022 Score=62.71 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
+..+.|+||+||||||+.+.|...+.
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0044 Score=61.38 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
..|||+|++|+|||||++.|+|.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.65 E-value=0.002 Score=62.80 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQ 1033 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~ 1033 (1224)
+.++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 358999999999999999888777643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.65 E-value=0.0028 Score=63.47 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
.+.+||+|++|+|||||++.|.|.
T Consensus 23 ~~~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHhcCC
Confidence 458999999999999999999985
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.62 E-value=0.0028 Score=61.91 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 340 RPDTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 340 ~~~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.|++..++|.||+||||||+.+.|...+.
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35566899999999999999999987653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.012 Score=61.79 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.+++...+-+.||+|+|||++++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 345566699999999999999999998773
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.55 E-value=0.0028 Score=61.88 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
|+|-+++|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5678899999999999999999987653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.52 E-value=0.0023 Score=63.08 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.48 E-value=0.0026 Score=61.88 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+.|+||+||||||+++.|++.++ +.+.++|
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 578999999999999999998764 3444443
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0027 Score=63.28 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=31.1
Q ss_pred EEEEcCCCCChHHHHHHHhcccC-------------CCCceEEECCccCCCCCHHHHhc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFYD-------------PQSGSVMVDERNIKSYNLRKLRS 1054 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~ 1054 (1224)
|.|+|||||||+||++.|+.-++ |..|++ ||+|..-++.+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHH
Confidence 78999999999999998865442 234443 677766666665543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.43 E-value=0.003 Score=62.98 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
+|||.|++|||||||++.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999976544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.41 E-value=0.0023 Score=63.10 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.003 Score=61.47 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.38 E-value=0.0031 Score=62.93 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.|||.|++||||||+.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 499999999999999999987655
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.36 E-value=0.0031 Score=63.14 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|||||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.36 E-value=0.0036 Score=61.08 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.+.|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999874
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.35 E-value=0.0017 Score=66.34 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDPVKGNIL 375 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 375 (1224)
+.+++++|+||+|||||+|.|.+......|+|.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 447899999999999999999998877777775
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.017 Score=60.68 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
..+.|.||+|+|||++++.+++.+.
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcchhHHHHHHHHhC
Confidence 4688999999999999999999873
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0034 Score=60.34 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+||+||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.33 E-value=0.0036 Score=61.06 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
+.|.|.|++||||||+.+.|...+.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.32 E-value=0.0087 Score=64.76 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILL 376 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 376 (1224)
.+.|+|++||||||+++.|+++.+|..=-|.+
T Consensus 168 nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 48999999999999999999999987666666
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.28 E-value=0.0025 Score=62.00 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPV 370 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 370 (1224)
.++|+|++|||||||++-|.+.+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 67999999999999999888776643
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.021 Score=59.49 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
..+.+.||+|||||++++.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3678999999999999999998764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0043 Score=60.32 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
...+.|+|++||||||+.+.|...+
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.22 E-value=0.0038 Score=60.66 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.+.|+||+||||||+.+.|+..+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999997654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.026 Score=54.94 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 047171 344 PTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
..+.++|++||||||+++-+..
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999988753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.028 Score=58.27 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+-+.||+|+|||++++.|.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.14 E-value=0.004 Score=60.46 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER 1042 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1042 (1224)
..+.|+|++||||||+++.|.+.+. +.+.++|-
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d 35 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD 35 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehH
Confidence 3589999999999999999998764 45555553
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.05 E-value=0.0046 Score=60.87 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCce
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGS 1036 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1036 (1224)
+.|+|.|++||||||+.+.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999998776554333
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0026 Score=63.48 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+|-.|.|+|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999987653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0043 Score=59.61 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|.|+|++||||||+.++|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.98 E-value=0.0043 Score=60.32 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.95 E-value=0.0027 Score=64.49 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=32.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc-CC-CCceEEECCccCCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY-DP-QSGSVMVDERNIKS 1046 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p-~~G~I~idG~di~~ 1046 (1224)
++|..|.|.|.||||||||.+.|..-+ +. ..-.+.+||-+++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 578899999999999999999987533 21 12357788866543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0054 Score=61.96 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
|..+.|+||||||||||.+.|...++
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56789999999999999998877654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.92 E-value=0.0058 Score=60.99 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+++|+||+||||||+.+.|+..|
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998766
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.91 E-value=0.0052 Score=60.64 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.00061 Score=68.72 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=28.5
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
.+++.++++.+| .+.|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 357778888776 8999999999999999998643
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0058 Score=60.22 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+.+.|+||||+||+||++.|+..+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999887544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.83 E-value=0.0042 Score=61.21 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
++++|.|++||||||+++.|...+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999987665443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.83 E-value=0.038 Score=55.38 Aligned_cols=26 Identities=38% Similarity=0.671 Sum_probs=16.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
...+++|||+|+||||.+.=|...+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44699999999999998766665553
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.82 E-value=0.056 Score=55.80 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
-+.+.||+|||||++++.|++.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 57899999999999999999865
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.0051 Score=61.12 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047171 346 IGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.|+|||||||+||++.|...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999887654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.78 E-value=0.0062 Score=59.39 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|+|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.0057 Score=60.32 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+||||||||||++.|...+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999887544
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.77 E-value=0.0047 Score=61.14 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.0054 Score=61.38 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+++.|+||+||||||+++.|+.-|
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999877
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.74 E-value=0.008 Score=59.74 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
++..+.|+||.||||||+.+.|+..|
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999655
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.0062 Score=65.16 Aligned_cols=46 Identities=22% Similarity=0.386 Sum_probs=33.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCCCCCcccH
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEPILFSTSI 407 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 407 (1224)
++||.|++||||||+.+.|...+.-..+. .++..+++|.++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCchH
Confidence 88999999999999999997765422110 14677888887765443
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.0069 Score=58.26 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEec-cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEE
Q 047171 1119 GGQKQRIALARAVLKNPMILLLDE-ATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTIQKADNI 1184 (1224)
Q Consensus 1119 GGQrQRlaLARAll~~p~ILlLDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~aD~I 1184 (1224)
..+......+...++++++++++= ++..--.+....+.+.++....++.+|+|....+........
T Consensus 65 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~ 131 (161)
T d2gj8a1 65 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 131 (161)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE
T ss_pred cchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH
Confidence 345555666777788888766432 222221222233344555555577888888887765543333
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.0066 Score=61.61 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.0069 Score=61.44 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999886654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.55 E-value=0.017 Score=59.84 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
+..++++||+=. |..+....+.+.+++...+..+|++|++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 566999999854 77777777777776655556678999988644
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.012 Score=61.00 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=33.4
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+.+++|+||+=. |..+....+.+.+++....+..|++|++.+-
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 457999999964 7788888888888766556667888988764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.0083 Score=58.43 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+|+|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.005 Score=61.28 Aligned_cols=25 Identities=44% Similarity=0.557 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.++.|+|++||||||+.+.|+..+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4478899999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.0076 Score=59.33 Aligned_cols=22 Identities=45% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+|+|||++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.44 E-value=0.0059 Score=60.15 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 047171 1009 VALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.43 E-value=0.0091 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
|+|=++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998655
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.43 E-value=0.0084 Score=58.85 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|+|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.39 E-value=0.084 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=20.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.+++.+.|.|++|+||||++.-++-
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3577999999999999999876653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.0091 Score=58.46 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999873
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.30 E-value=0.0079 Score=58.97 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
-+++|||++|+|||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999997753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.30 E-value=0.11 Score=51.74 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.++++|||+|+||||.+--|+..+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999988766665543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.0093 Score=59.39 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047171 346 IGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.|+||||||||||++.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.27 E-value=0.009 Score=57.48 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|+|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.006 Score=60.04 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+|+|+|++++|||||++.|.+..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.26 E-value=0.0092 Score=56.93 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.|+|++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.24 E-value=0.0091 Score=62.56 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+|+|+|++|+|||||++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999999853
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.22 E-value=0.01 Score=57.38 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 047171 346 IGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999997765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.01 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
++|+|||++|||||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.18 E-value=0.01 Score=59.15 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEEC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVD 1040 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1040 (1224)
...|.|+||.||||||+.+.|..-| |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 3579999999999999999998766 445554
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.1 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
++++|||+|+||||.+-=|+..+.
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 789999999999987765565554
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.16 E-value=0.039 Score=56.63 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+++..+.|.|++|||||||+.-++--
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999998666543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.14 E-value=0.0082 Score=59.80 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
|.|+||||||||||++.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999986543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.012 Score=56.57 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+++++|++|+|||||++.|+|.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.03 E-value=0.0079 Score=59.44 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
-|||+|++++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.02 E-value=0.012 Score=57.63 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+|+|+|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.011 Score=56.35 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
|++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.97 E-value=0.012 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+||+||||||+.+.|+-.|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997765
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.97 E-value=0.011 Score=57.24 Aligned_cols=23 Identities=43% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+|++||||||+.++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998655
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.93 E-value=0.012 Score=57.22 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+|++||||||+.+.|+..+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999997544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.14 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~ 364 (1224)
++..+.|.|++|+|||||+--|+
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 35688999999999999986554
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.01 Score=63.43 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQ 1072 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIre 1072 (1224)
.|||.|++||||||+.+.|..+..-..+ | .++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----H------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----C------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----C------------CceEEEeeeeeECCchHHH
Confidence 4999999999999999999877642111 1 2377888888877655443
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.012 Score=59.26 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|+|||++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.013 Score=58.21 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
++.|+||+||||||.++.|+..|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.85 E-value=0.0046 Score=59.53 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.84 E-value=0.011 Score=56.93 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=24.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
.+.|+|++||||||+.+.|...+ |--++|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEec
Confidence 48899999999999999997765 4445553
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.83 E-value=0.011 Score=58.57 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|.||+||||||+.+.|+.-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998766
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.022 Score=55.14 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER-----FYDPQSG 1035 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G 1035 (1224)
||+++|.+|+|||||++-+.+ -|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 689999999999999987664 3556655
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.74 E-value=0.014 Score=57.34 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+||.||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.71 E-value=0.014 Score=55.50 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++.|+|++|||||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.015 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.69 E-value=0.012 Score=58.77 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+++|-|+.||||||++++|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998865
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.032 Score=53.98 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLLER-----FYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G 372 (1224)
+++++|.+|+|||||++-+.+ .|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 689999999999999987654 3456655
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.67 E-value=0.01 Score=58.36 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 047171 346 IGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 346 ~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
|||+|.+|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.65 E-value=0.014 Score=60.15 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+++|+|+.|||||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.63 E-value=0.015 Score=58.52 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.++++|.+||||||+++.|++.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999997654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.61 E-value=0.015 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+++|||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.51 E-value=0.013 Score=57.37 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+++|||++|+|||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.50 E-value=0.015 Score=57.60 Aligned_cols=22 Identities=55% Similarity=0.868 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
++||.|++||||||+++.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7899999999999999998643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.48 E-value=0.014 Score=56.75 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
+.+.|+|++||||||+.+.|..-+ |--++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh----CCCEEeh
Confidence 457799999999999999997654 3345554
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.017 Score=55.08 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.40 E-value=0.12 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
++++|||+|+||||.+--|+..+
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999998765554433
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.39 E-value=0.019 Score=58.99 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|+|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.36 E-value=0.017 Score=56.68 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 047171 1009 VALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
|||+|+.+||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.34 E-value=0.018 Score=58.53 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.+||-||+||||||+.++|+..|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999987663
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.31 E-value=0.018 Score=64.41 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
.|||+|++|+|||||++.|.|...-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996543333
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.30 E-value=0.017 Score=57.49 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+++.|+||+||||||+.+.|+.-|
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998866
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.28 E-value=0.017 Score=58.05 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.|.+||++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.017 Score=57.63 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHH
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEI 1086 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei 1086 (1224)
..+.|+||.||||||+.+.|..-| |-+.|+.-| -+|+.+ .+...-....+++-..-+. ...+..+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~-~~~~~~~ 73 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQ-IVPQEIT 73 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTC-CCCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh----CCeEEehhH-------HHHHHh---hhcccHHHHHHHHhhhccc-cccchhH
Confidence 359999999999999999999877 556665322 234321 2222223334444333332 2344444
Q ss_pred HHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEecc
Q 047171 1087 RKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143 (1224)
Q Consensus 1087 ~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEa 1143 (1224)
.......-...+.. .-+..+-++ .-....|...+.+.+.....+++||=|
T Consensus 74 ~~~~~~~~~~~~~~----~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 74 LALLRNAISDNVKA----NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHhhhcc----CCCceeeec---cchhHHHHHHHHHhccccceeeccCCC
Confidence 33332222211111 111112111 122467888888877665566667643
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.02 Score=58.07 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
++++|-||+||||||+.++|+.-|.
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987663
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.24 E-value=0.11 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
...+++|||+|+||||.+.=|+..+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999875555443
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.029 Score=54.11 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhc-----ccCCCCce-----EEECCcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIER-----FYDPQSGS-----VMVDERN 1043 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~-----I~idG~d 1043 (1224)
-||+|+|++|+|||||++.+.+ .|.|+-|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence 3799999999999999998753 23455443 4566654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.22 E-value=0.025 Score=54.43 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+++++|++|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999998754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.22 E-value=0.018 Score=60.14 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.019 Score=56.18 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+||+||||||..+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998665
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.17 E-value=0.025 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+|+|||+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999987743
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.013 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
...|+|+|++++|||||++.|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.08 E-value=0.02 Score=56.79 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
.+||+|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.039 Score=53.10 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998753
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.04 E-value=0.016 Score=57.63 Aligned_cols=117 Identities=18% Similarity=0.233 Sum_probs=64.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCC
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVAT 1082 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~ 1082 (1224)
++.+..|.|+||.||||||+.+.|..-| |-..|+--++ +|+.+ ...+ .....+.+.+.-+ ...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~---~~~~-~~~~~~~~~~~~~-~~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEV---SSGS-ARGKMLSEIMEKG-QLVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHH---HHTC-HHHHHHHHHHTTT-CCCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccHH-------HHHHH---HHhH-hhhhhhHHHHhhc-cCCc
Confidence 4567889999999999999999998865 4455543221 22211 1111 1123445555444 3456
Q ss_pred HHHHHHHHHHHhHHHHHHhcccccccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEecc
Q 047171 1083 EAEIRKAAVLANAHEFISSTEDGYDTYCGERGVQLSGGQKQRIALARAVLKNPMILLLDEA 1143 (1224)
Q Consensus 1083 deei~~al~~a~l~~~I~~lp~gldt~vge~G~~LSGGQrQRlaLARAll~~p~ILlLDEa 1143 (1224)
++.+...++. .+...+...+-.+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 69 ~~~~~~~~~~-----~l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRD-----AMVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred hheeeeehhh-----hhhhcccccccceee---eccchhHHHHHHHHHhCCccchhccccc
Confidence 6666554432 222222211112212 2455566777777777666666667654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.00 E-value=0.021 Score=55.86 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++.|+||.||||||+.+.|.--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997765
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.025 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
-+++|+.+-|.||+||||||+..-++.-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3899999999999999999998766543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.012 Score=63.61 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
..++||+||.|||||||++.|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.96 E-value=0.018 Score=57.06 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998766
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.95 E-value=0.017 Score=55.77 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++.++|++||||||+.++|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37788999999999999997665
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.0086 Score=59.74 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
++.|+|||||||||++.+|.-.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.84 E-value=0.024 Score=55.11 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
|+++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.82 E-value=0.023 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+|.|+||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.82 E-value=0.025 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|.||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998665
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.019 Score=59.06 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998774
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.71 E-value=0.019 Score=56.39 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999988765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.025 Score=56.80 Aligned_cols=21 Identities=43% Similarity=0.789 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.+||.|+.||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.65 E-value=0.023 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|+|-|..||||||++++|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998865
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.025 Score=56.07 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=41.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCCCCHHHHH
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEVATEAEIR 1087 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~~~deei~ 1087 (1224)
+|.|+||.||||||..+.|..-| |-..|+-- +-+|..+ -++...+.-.+.+.+.-+ ...+|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~~---~~~~~~~~~~~~~~~~~~-~~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDER---KNPDSQYGELIEKYIKEG-KIVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HCTTSTTHHHHHHHHHTT-CCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEcHH-------HHHHHHH---HhhhhhHHHHHHHHHhcC-Cccccchhh
Confidence 58999999999999999998765 43444321 1234321 122333444566666544 345666665
Q ss_pred HHHH
Q 047171 1088 KAAV 1091 (1224)
Q Consensus 1088 ~al~ 1091 (1224)
..++
T Consensus 68 ~~~~ 71 (194)
T d1teva_ 68 SLLK 71 (194)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.63 E-value=0.27 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+..+.+|||+|+||||.+.=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999998877766554
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.053 Score=52.26 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLLER-----FYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G 372 (1224)
++++||++|+|||||++-+.. .|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 689999999999999987763 4456544
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.59 E-value=0.01 Score=60.00 Aligned_cols=39 Identities=38% Similarity=0.291 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCEe
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYDP--VKGNILLDGHK 380 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~ 380 (1224)
.+.++-+.|.||||||||.+.|...+.. .--.+.+||-+
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence 3458999999999999999998754321 12346677643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.59 E-value=0.036 Score=55.45 Aligned_cols=27 Identities=41% Similarity=0.790 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
++..+++|||+|+||||.+.=|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999998866676664
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.59 E-value=0.026 Score=55.35 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
++.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999987664
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.58 E-value=0.031 Score=54.31 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 689999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.55 E-value=0.045 Score=53.00 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=26.6
Q ss_pred ceeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 995 IFKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 995 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
.++.-.+.+ .|.-|.|.|+||+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666 788999999999999999976653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.54 E-value=0.026 Score=57.24 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.|||-||+||||||+.++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.072 Score=53.99 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+.+++++||.= .+.......+.+.|++..+..-++++++....
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 34799999985 56777888888888877655566677766554
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.41 E-value=0.01 Score=56.86 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
.++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.021 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
-+|||+|+.|||||||+..|.+.+..
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 36999999999999999999876653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.40 E-value=0.03 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|+||.||||||+.+.|+--|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999866
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.37 E-value=0.028 Score=55.07 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
.+||||+..+|||||++.|++.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 4899999999999999999874
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.36 E-value=0.06 Score=51.88 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC----CCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLLE-RF----YDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~-~~----~~~~~G 372 (1224)
++++||..|+|||||++-+. +. |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 68999999999999998654 43 345555
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.35 E-value=0.033 Score=55.75 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
...++++|||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999997766666554
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.35 E-value=0.029 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
=+|.+||+.|||||||++.|.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.047 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.+||.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987763
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.33 E-value=0.024 Score=59.38 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDG 378 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 378 (1224)
.+.++||+||||||+++.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 4789999999999999999998753 2344544
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.03 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++.|+||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.21 E-value=0.05 Score=52.51 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCce
Q 047171 1008 TVALVGQSGSGKSTIIGLIER-----FYDPQSGS 1036 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1036 (1224)
||.++|.+|+|||||++.+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 799999999999999988653 35565553
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.21 E-value=0.33 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999964
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.17 E-value=0.031 Score=56.05 Aligned_cols=20 Identities=50% Similarity=0.704 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 047171 1008 TVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
.|||+|..||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.14 E-value=0.031 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999876
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=0.034 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|+||.||||||+.+.|+-.|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998765
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.037 Score=55.72 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
++|..|+|-|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999977654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.96 E-value=0.033 Score=53.81 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||++||++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 499999999999999997754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.94 E-value=0.022 Score=59.83 Aligned_cols=26 Identities=38% Similarity=0.703 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.+++||.|+|||||||+.+.|...+.
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHh
Confidence 35899999999999999998876553
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.93 E-value=0.047 Score=52.33 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+++++|++|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998655
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.92 E-value=0.21 Score=51.82 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=38.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eEEECCccCCCCCHHHHhcceEE
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
-++.|..+-|.|++||||||+...++....-..| -++||... .++++.+ +++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a-~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA-RALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 6789999999999999999999877776543334 46777653 4555544 34554
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.90 E-value=0.2 Score=51.18 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=33.3
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1135 PMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1135 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
.+|+|+||+=. |+.+....+.+.|++...++..|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999954 77777777888887655667888899887654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.058 Score=52.08 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCce
Q 047171 1008 TVALVGQSGSGKSTIIGLIER-----FYDPQSGS 1036 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1036 (1224)
||+|||.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 699999999999999987643 34455554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.83 E-value=0.074 Score=51.17 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCcE
Q 047171 345 TIGLVGSSGSGKSTVISLLER-----FYDPVKGN 373 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~ 373 (1224)
+++++|.+|+|||||++-+.. .|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 789999999999999997653 34566553
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.061 Score=51.92 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh-c----CCCCCCcEE
Q 047171 345 TIGLVGSSGSGKSTVISLLE-R----FYDPVKGNI 374 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~-~----~~~~~~G~i 374 (1224)
+++|+|.+|+|||||++-+. + .|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 68999999999999998664 3 334666543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.70 E-value=0.04 Score=61.41 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1004 EAGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1004 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
.++-.+.|.|||||||||++..+++..+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 45667999999999999999999987643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.68 E-value=0.039 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
++++||.+|||||||++-|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998873
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.59 E-value=0.039 Score=53.51 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+|++||+.|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998855
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.073 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998765
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.52 E-value=0.039 Score=57.64 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=26.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDER 1042 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1042 (1224)
-+.++||+||||||+++.|++.+. .+-+.+|+-
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d 66 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDND 66 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEecH
Confidence 488999999999999999999774 345566653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.49 E-value=0.041 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.45 E-value=0.064 Score=51.65 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||++||..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999986553
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.44 E-value=0.029 Score=58.96 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 599999999999999999877654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.40 E-value=0.035 Score=56.97 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
.+.+.||+|+||||++++|+..+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence 568999999999999999998876553
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.05 Score=60.54 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 372 (1224)
.|||+|++|+|||||+|.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 6899999999999999999996543333
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.37 E-value=0.043 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.|+|+|+.|||||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999876
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.31 E-value=0.045 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
++.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.30 E-value=0.052 Score=56.59 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=39.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc--CCCCceEEECCccCCCCCHHHHhcceEEEec
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY--DPQSGSVMVDERNIKSYNLRKLRSCIALVSQ 1061 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1061 (1224)
.|||+|+.|||||||+..|+..- ....|++. +|..+.+..+++..+++++-+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~ 58 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTG 58 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEee
Confidence 48999999999999999885432 12356554 5777788888888887765443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.045 Score=54.95 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++||+|..||||||+++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.097 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
++.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 689999999999999999887543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.043 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.041 Score=55.12 Aligned_cols=25 Identities=36% Similarity=0.678 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
..+++|||+|+||||.+.=|...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999998866666554
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.11 E-value=0.046 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.|+|-||.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987664
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.052 Score=56.09 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
..+.|.||+|+||||+++++++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.02 E-value=0.053 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+|..|+|-|+-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.01 E-value=0.29 Score=48.90 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.5
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHc-CCCeEEEEeCCc
Q 047171 469 IRDPKILLLDEATSAL-DAESERIVQEALDQAS-QGRTMIIIAHRL 512 (1224)
Q Consensus 469 ~~~~~ililDE~ts~l-D~~~~~~i~~~l~~~~-~~~t~i~i~H~l 512 (1224)
+++.++|++||-=.-. +...+..+...+.... .|+.+|+.+.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence 4689999999985433 4667888888887754 566766666543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.00 E-value=0.051 Score=52.44 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 689999999999999997653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.048 Score=52.94 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
|+++||+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.98 E-value=0.048 Score=53.45 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.97 E-value=0.094 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|+|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 689999999999999997653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.065 Score=51.24 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.89 E-value=0.05 Score=52.14 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999997753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.78 E-value=0.052 Score=61.00 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCEecCCCCHHHHhcccEEecCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNILLDGHKIKKLQLKWLRSQMGLVNQEP 400 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 400 (1224)
-+.++||||||||-|++.|+++.+.- -+..|+..++ ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 46899999999999999999988633 4556655443 389999886
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.74 E-value=0.036 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
+.++|-|+.||||||++++|...++
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999998764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.056 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+|+|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 499999999999999988764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.68 E-value=0.08 Score=51.19 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=23.9
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
++.--+. -.|.-|.|+|+||+||||++..|..
T Consensus 5 lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4444443 3478899999999999999876653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.093 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.054 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||++||.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.64 E-value=0.058 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 688999999999999997643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.058 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
||+++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 68999999999999999887653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.095 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.59 E-value=0.053 Score=52.52 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998855
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.093 Score=50.30 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999988763
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.091 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.+||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999977654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.47 E-value=0.049 Score=57.20 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
.|||.|++|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4999999999999999877543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.47 E-value=0.064 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+|..|+|-|+-||||||++++|...++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999986665
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.058 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.+||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999997764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.084 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
||.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 68999999999999999887654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.43 E-value=0.057 Score=51.83 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.39 E-value=0.061 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
=++.|+||.||||||+.+.|.--|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998766
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.35 E-value=0.094 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999976653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.35 E-value=0.063 Score=54.67 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
+++||+|+..||||||++.|++.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCccHHHHHHHHHhh
Confidence 37999999999999999999874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.078 Score=50.90 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.30 E-value=0.11 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988763
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.28 E-value=0.053 Score=58.11 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
+.-+.++||+|+|||+|+++|++.+. .--+.+|+-++
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~ 85 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF 85 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence 34578999999999999999999764 22466666544
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.27 E-value=0.074 Score=59.72 Aligned_cols=45 Identities=18% Similarity=0.432 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccCCCCCHHHHhcceEEEecCC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNIKSYNLRKLRSCIALVSQEP 1063 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qdp 1063 (1224)
-+-++||||||||-|++.|+++.+.. =+.+|+...++ .|||-.|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe---------aGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE---------VGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee---------cceeecch
Confidence 48899999999999999999988643 57777776664 77887776
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.08 Score=50.73 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.18 E-value=0.075 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
-+++|+.+-|.|++||||||+..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999996554
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.066 Score=51.89 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.065 Score=53.75 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
.|||+|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999998753
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.095 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999986654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.10 E-value=0.089 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.074 Score=52.05 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|+|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.064 Score=51.76 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
|+.++|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998765
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.02 E-value=0.068 Score=52.12 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDE 1041 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1041 (1224)
++.|+||.||||||+.+.|.--| |-+.|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence 57899999999999999998765 4555544
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.98 E-value=0.096 Score=50.30 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=23.7
Q ss_pred eeceeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 047171 996 FKGLTLKIEAGKTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 996 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
++. ++-.-.|.-|.|.|+||+||||+...|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 33344588999999999999999866543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.97 E-value=0.12 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999997654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.94 E-value=0.11 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.93 E-value=0.055 Score=52.83 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
+|+++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999997753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.88 E-value=0.073 Score=52.05 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.079 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+++++|.+|+|||||++-+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58999999999999999988754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.85 E-value=0.063 Score=57.70 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+++|.|+.|+|||||+.-|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999887654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.84 E-value=0.068 Score=55.66 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEECCEecCCCCHHHHhcccEEe
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY--DPVKGNILLDGHKIKKLQLKWLRSQMGLV 396 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 396 (1224)
.+||+|+.|||||||+..|+..- ....|++. +|..+.++.+++..+++++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEE
Confidence 47999999999999999884321 22345543 45566677777766665543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.83 E-value=0.067 Score=54.47 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
++.|+++||.= .+.......+...+.........|+++++.+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 67799999962 333344455666665555566778888887655
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.13 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999996654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.70 E-value=0.072 Score=50.92 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.68 E-value=0.074 Score=54.14 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 047171 1009 VALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
|||+|+.+||||||++.|++-
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHhh
Confidence 999999999999999999874
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.61 E-value=0.08 Score=50.16 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDP 1032 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1032 (1224)
..+||..|.+.|+=||||||+.+.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3468999999999999999999999887643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.57 E-value=0.08 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8899999999999999877543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.54 E-value=0.072 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.+.+.||+|+||||+++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 567999999999999999998653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.48 E-value=0.071 Score=57.05 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
-+.++||+|||||.|++.|++.+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHhhccc
Confidence 567999999999999999999753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.45 E-value=0.077 Score=51.83 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
|++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999977653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.084 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++++||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999997654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.08 Score=50.75 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.|||.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.36 E-value=0.085 Score=55.06 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChHHHHHHHh---cccCCCCceEEECCccCCCCCHHHHhcceEE
Q 047171 1008 TVALVGQSGSGKSTIIGLIE---RFYDPQSGSVMVDERNIKSYNLRKLRSCIAL 1058 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1058 (1224)
.|||+|..|||||||+..|+ |..+ ..|++. +|..+.+..+++..+++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcc
Confidence 48999999999999998885 3333 245553 4555666666776666655
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.26 E-value=0.073 Score=59.14 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=36.1
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchhhccCE
Q 047171 463 AIARALIRDPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTIRKADL 520 (1224)
Q Consensus 463 aiARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~~~ad~ 520 (1224)
++..+|=+||||++..|.. |+++.+... +....|+-|+-.-|=-+.+.-.+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~---~aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV---QASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH---HHHhcCCeEEEEeccCchHhhhhh
Confidence 4666777899999999986 677655443 344568888888886655443333
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.081 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
-||.|+|.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3799999999999999987664
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.14 E-value=0.079 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.|.||+|+||||+++++++.+
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.082 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+|||..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.068 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999986543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.95 E-value=0.14 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999975543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.88 E-value=0.064 Score=51.89 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=9.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.++|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.86 E-value=0.11 Score=49.61 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.81 E-value=0.11 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
|..++|-|+-||||||++++|...+.
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999987543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.79 E-value=0.15 Score=49.43 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
++.++|.+|+|||||++-+.
T Consensus 4 KivliG~~~vGKTsli~r~~ 23 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFA 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999997553
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.082 Score=51.61 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 047171 344 PTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
-+++|+|.+|+|||||++-+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999976653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.77 E-value=0.13 Score=51.23 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=25.1
Q ss_pred CCCCCCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 337 YPTRPDTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 337 y~~~~~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
||...+.-.+||+|+..+|||||++.|++...
T Consensus 2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 44433333699999999999999999998654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.71 E-value=0.1 Score=49.81 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+++++|.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998665
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.70 E-value=0.1 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.11 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
|..++|-|+-||||||++++|...+
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999987654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.094 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999997753
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.53 E-value=0.08 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=29.1
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcccC
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
|.=+.|-+||+.+|+|++|+|||||+..+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 3345888999999999999999999999988543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.52 E-value=0.12 Score=52.28 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=24.1
Q ss_pred eeceeE-EEeCCcEEEEEcCCCCChHHHHHH
Q 047171 996 FKGLTL-KIEAGKTVALVGQSGSGKSTIIGL 1025 (1224)
Q Consensus 996 L~~isl-~I~~Ge~vaIVG~SGsGKSTL~~l 1025 (1224)
|+++-- -+++|+.+-|.|++|+||||++.-
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence 444432 389999999999999999999843
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.49 E-value=0.14 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcCC
Q 047171 345 TIGLVGSSGSGKSTVISLL-ERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll-~~~~ 367 (1224)
+++++|+.|+|||||++-+ .+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 6899999999999999855 4443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.49 E-value=0.099 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998765
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.44 E-value=0.11 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 047171 343 TPTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+.-+.|.|+||+||||++-.|..
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999876553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.43 E-value=0.1 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFYDPVK 371 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 371 (1224)
..+.|.||+|+||||+++.++..+....
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 3789999999999999999998876443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.40 E-value=0.1 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
-|++|+.+-|.|++||||||+..-++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999987665
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.34 E-value=0.1 Score=54.13 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 047171 1005 AGKTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1005 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.+..+.|+||.|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999998876543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.11 Score=49.96 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 047171 1008 TVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
||.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998877
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.27 E-value=0.11 Score=54.19 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEECCEecCCCCHHHHhcccEE
Q 047171 345 TIGLVGSSGSGKSTVISLLE---RFYDPVKGNILLDGHKIKKLQLKWLRSQMGL 395 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 395 (1224)
.+||+|+.|||||||+..|+ |..+. .|++. +|..+.+..+++..+++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCCcc
Confidence 58999999999999998884 44433 35542 3444455555555555543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.24 E-value=0.12 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLI 1026 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL 1026 (1224)
-+++|+.+-|.|++||||||+..-+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 3899999999999999999998644
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.23 E-value=0.12 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=23.0
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q 047171 1003 IEAGKTVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
+++|+.+-|.|++|+||||+..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986664
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.15 E-value=0.077 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 047171 344 PTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.+++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999998743
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.14 E-value=0.14 Score=52.82 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 047171 1006 GKTVALVGQSGSGKSTIIGLIERFYDPQSG 1035 (1224)
Q Consensus 1006 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1035 (1224)
...+.|.||+|+||||+++.+...+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 357899999999999999999988764333
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.14 E-value=0.1 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.+.||+|||||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 57899999999999999998753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.13 E-value=0.11 Score=49.97 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
|+++||+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.14 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|||.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.10 E-value=0.1 Score=53.27 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHhcccCCCCceEEECCcc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERN 1043 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1043 (1224)
+-+.||+|+||||++++|...+.... +.++|.+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~ 70 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPV 70 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTT
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc--ccccCcc
Confidence 78999999999999999998877543 3345543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.97 E-value=0.11 Score=51.31 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 047171 1008 TVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
||+|+|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 399999999999999997663
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.11 Score=50.22 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++.++|.+|+|||||++-+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987664
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.13 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 342 DTPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 342 ~~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.|..++|-|+-||||||++++|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999986654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.84 E-value=0.096 Score=56.18 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
-++||.|+.|+|||||+..|.+.+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHH
Confidence 469999999999999999988654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=0.11 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.72 E-value=0.13 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.+-|.||+|+||||++++|++.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.70 E-value=0.12 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.68 E-value=0.12 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.302 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 047171 344 PTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
.-+.|.|+||+||||++..|..
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999976653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.61 E-value=0.14 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+||+|...+|||||++.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 57999999999999999999854
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.59 E-value=0.12 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
.|+|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987554
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.58 E-value=0.12 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++|||.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.56 E-value=0.089 Score=50.82 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=9.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999986553
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.44 E-value=0.17 Score=49.79 Aligned_cols=28 Identities=43% Similarity=0.558 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHH--hcCCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLL--ERFYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll--~~~~~~~~G 372 (1224)
++.++|.+|+|||||++-+ .-.+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 6899999999999999877 234568877
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.31 E-value=0.11 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|.++|++|+|||||++.+..-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999987653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=0.13 Score=49.14 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 047171 1008 TVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998765
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.13 E-value=0.13 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
+|||||...+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999885
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.13 E-value=0.14 Score=52.33 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
++||.|+-||||||+++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.09 E-value=0.18 Score=49.07 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceE
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSV 1037 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1037 (1224)
|+.++|..|+|||||++-+....-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999988776667777743
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=0.14 Score=50.08 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 047171 1008 TVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
||+|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 59999999999999997765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.07 E-value=0.18 Score=48.34 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
++++||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998776
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.07 E-value=0.13 Score=51.97 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
+..++++||.-. +.......+...++........+++++..+-+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 467999999754 44445555666666666667788888887654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.00 E-value=0.12 Score=52.36 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
++.|+++||.= .+-......+...+.+....+..|.++++.+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 67899999972 333445556667776666666778888887654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.96 E-value=0.15 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.+++||...||||||++.|+|.-
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999964
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.95 E-value=0.15 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhc
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
+++..+.|.||+|||||||+.-++.
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999876654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.95 E-value=0.15 Score=51.49 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcCCCCCCc
Q 047171 345 TIGLVGSSGSGKSTVISLL-ERFYDPVKG 372 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll-~~~~~~~~G 372 (1224)
++.++|.+|+|||||++-+ .+.+.||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 7899999999999999865 456678777
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.90 E-value=0.15 Score=52.88 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=35.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCc-eEEECCccCCCCCHHH
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSG-SVMVDERNIKSYNLRK 1051 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~ 1051 (1224)
-+++|..+-|.|++||||||+..-++....-..| -++||... .++.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~ 98 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY 98 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHH
Confidence 6889999999999999999998766655543334 47787764 344443
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.099 Score=50.34 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+++++|++|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=86.80 E-value=0.098 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
++.++|++|+|||||++-+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999887543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.79 E-value=0.15 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
|||+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 8999999999999999998754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.64 E-value=0.069 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
.|||+|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999643
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.60 E-value=0.17 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
+.+++||.-.||||||++.|+|.-
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999964
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.54 E-value=0.15 Score=52.84 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 344 PTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 344 ~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+.|+||+|+|||||++-++...
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHC
Confidence 478999999999999998876543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.49 E-value=0.14 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 047171 1009 VALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
+-|.||+|+||||+++++++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.36 E-value=0.15 Score=54.25 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHccCCC--EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEcc
Q 047171 1121 QKQRIALARAVLKNPM--ILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAH 1173 (1224)
Q Consensus 1121 QrQRlaLARAll~~p~--ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaH 1173 (1224)
+.+--.+++..+++++ ||....++..........+.+.++.. ..+|++++++
T Consensus 154 ~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC-CCeEEEEEec
Confidence 4455677888888886 66667766666555544444444322 2578888876
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.34 E-value=0.21 Score=51.75 Aligned_cols=73 Identities=12% Similarity=0.257 Sum_probs=48.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCce-EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHccCCCC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGS-VMVDERNIKSYNLRKLRSCIALVSQEPTLFAGTIRQNIVYGKEV 1080 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Qdp~LF~gTIreNl~~~~~~ 1080 (1224)
-++.|..+-|.|++||||||+..-+.....-..|. |+||... .++++.+++ +|+ |+ +|+.+..++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~Gv---D~--------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGV---DT--------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTC---CG--------GGCEEECCS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCC---CH--------HHeEEecCC
Confidence 68899999999999999999986666655545555 6778764 356665544 453 11 355555443
Q ss_pred CCHHHHHHH
Q 047171 1081 ATEAEIRKA 1089 (1224)
Q Consensus 1081 ~~deei~~a 1089 (1224)
+-|++.+.
T Consensus 122 -~~E~~~~~ 129 (269)
T d1mo6a1 122 -TGEQALEI 129 (269)
T ss_dssp -SHHHHHHH
T ss_pred -CHHHHHHH
Confidence 45555443
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.24 E-value=0.15 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 047171 343 TPTIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+.-+.|.|+||+||||++-.|.
T Consensus 15 g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 3468999999999999885544
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.08 E-value=0.16 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIER 1028 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~r 1028 (1224)
..|||.|.-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999854
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.00 E-value=0.28 Score=48.43 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=34.5
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLST 1177 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1177 (1224)
+.+|+|+||+= .|..++...+.+.|++-.++...|++|++.+.
T Consensus 79 ~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 79 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCEEEEEeCcc-ccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence 35899999974 46788888999999876666778889998764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.98 E-value=0.25 Score=48.38 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+++++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999987654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.95 E-value=0.16 Score=49.76 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 047171 1008 TVALVGQSGSGKSTIIGLIE 1027 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~ 1027 (1224)
||+++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999997664
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.78 E-value=0.16 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
=++||||...+|||||+++|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999975
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.77 E-value=0.16 Score=51.20 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCCcchh
Q 047171 471 DPKILLLDEATSALDAESERIVQEALDQASQGRTMIIIAHRLSTI 515 (1224)
Q Consensus 471 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i~H~l~~~ 515 (1224)
+.+++++||.= .+.......+.+.+++..+..-++++++..+.+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34699999974 566677777888887766555666777765544
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.72 E-value=0.18 Score=49.53 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChHHHHHHHh--cccCCCCc
Q 047171 1008 TVALVGQSGSGKSTIIGLIE--RFYDPQSG 1035 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~--rl~~p~~G 1035 (1224)
|+.|+|.+|+|||||++-+. .-+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 78999999999999998872 22457878
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.71 E-value=0.19 Score=48.02 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
++++||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.61 E-value=0.21 Score=50.38 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCChHHHHHHH-hcccCCCCc
Q 047171 1007 KTVALVGQSGSGKSTIIGLI-ERFYDPQSG 1035 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL-~rl~~p~~G 1035 (1224)
-||.++|.+|+|||||++-+ .+-+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 37999999999999999765 455667777
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.56 E-value=0.16 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHhcccC
Q 047171 1009 VALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1009 vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+-+.||+|+||||+++++.+.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.45 E-value=0.2 Score=48.89 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 047171 345 TIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+++|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999997755
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.41 E-value=0.22 Score=46.94 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
+.++++.|+=||||||+++.+++-+-.
T Consensus 33 g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 33 AIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEecCCCccHHHHHHHHHhhccc
Confidence 458899999999999999999876643
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.41 E-value=0.16 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
-+.+.||+|||||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 57899999999999999999975
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=0.17 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
..+|+|+||.++|||||++.|.|..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCC
Confidence 3489999999999999999998754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.16 E-value=0.19 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 047171 345 TIGLVGSSGSGKSTVISLLER 365 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~ 365 (1224)
-+||+|+.++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999999864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.16 E-value=0.17 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
.|-+.||+|||||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 58899999999999999998754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.11 E-value=0.3 Score=51.02 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc-----------CCCCceEEEC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY-----------DPQSGSVMVD 1040 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~-----------~p~~G~I~id 1040 (1224)
=++||||-..+|||||+++|.+-- +|.-|.|.+.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 379999999999999999999542 4556777654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.10 E-value=0.24 Score=48.21 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDPVKGNI 374 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 374 (1224)
++.++|..|+|||||++-+....-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999988766666777743
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.04 E-value=0.19 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
-.|+|+|+.++|||||++.|+|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.04 E-value=0.23 Score=51.39 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.4
Q ss_pred ceeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 047171 998 GLTLKIEAGKTVALVGQSGSGKSTIIGLIERF 1029 (1224)
Q Consensus 998 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1029 (1224)
|.=+.+-+||+++|.|++|+|||||+.-+.+-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 44468999999999999999999998777654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.66 E-value=0.26 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
...+||||.+-||||||++.|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 358999999999999999999975
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.56 E-value=0.16 Score=46.51 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.0
Q ss_pred EeCCcEEEEEcCCCCChHHHH-HHHhccc
Q 047171 1003 IEAGKTVALVGQSGSGKSTII-GLIERFY 1030 (1224)
Q Consensus 1003 I~~Ge~vaIVG~SGsGKSTL~-~lL~rl~ 1030 (1224)
+++|+.+-|++|+|||||..+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 367999999999999999655 3444433
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.93 E-value=0.25 Score=49.71 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 047171 1134 NPMILLLDEATSALDSASENLVQEALEKMMVGRTCVVVAHRLSTI 1178 (1224)
Q Consensus 1134 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1178 (1224)
+.+++++||+-. +.......+...+++....+..+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 367999999864 44456666777777766667778888877553
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.91 E-value=0.27 Score=52.43 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
.|||||.+-+|||||++.|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999885
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=82.72 E-value=0.27 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 343 TPTIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 343 ~~~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
...+.+.||+|+||||+++.|+++..
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44789999999999999999999875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.27 E-value=0.21 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFY 367 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~ 367 (1224)
.+.++||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 34567999999999999998875
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.26 E-value=0.31 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFY 1030 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~ 1030 (1224)
-+-+.||+|+|||++++.+.+..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 48899999999999999999865
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.12 E-value=0.27 Score=49.94 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYD 368 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~ 368 (1224)
.++|=|+-||||||++++|...+.
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.01 E-value=0.34 Score=51.59 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=27.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCceEEECCccC
Q 047171 1008 TVALVGQSGSGKSTIIGLIERFYDPQSGSVMVDERNI 1044 (1224)
Q Consensus 1008 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1044 (1224)
.+.++||||+|||.|++.|.+.+. .--|.+|..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s~~ 88 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEY 88 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGC
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEeccccc
Confidence 478999999999999999999874 23566665443
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=81.99 E-value=0.17 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 047171 345 TIGLVGSSGSGKSTVISLLERFYDP 369 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~~~~ 369 (1224)
.+.|+|+.|+|||||++.+.++++|
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 5789999999999999999999876
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.75 E-value=0.31 Score=49.32 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHh
Q 047171 341 PDTPTIGLVGSSGSGKSTVISLLE 364 (1224)
Q Consensus 341 ~~~~~~~ivG~sGsGKSTl~~ll~ 364 (1224)
+.+..+.|.||+|||||||+.-++
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHH
Confidence 467799999999999999997654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.33 E-value=0.32 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccC
Q 047171 1007 KTVALVGQSGSGKSTIIGLIERFYD 1031 (1224)
Q Consensus 1007 e~vaIVG~SGsGKSTL~~lL~rl~~ 1031 (1224)
+.++|=|.-||||||++++|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4689999999999999999987654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.74 E-value=0.31 Score=52.95 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=31.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcccCCCCceE-EECCccC
Q 047171 1002 KIEAGKTVALVGQSGSGKSTIIGLIERFYDPQSGSV-MVDERNI 1044 (1224)
Q Consensus 1002 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~idG~di 1044 (1224)
.++++.++.++||.|+||||+.+.|+++.. |.+ .+|+.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence 336677899999999999999999999875 444 3666554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=80.60 E-value=0.63 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 047171 345 TIGLVGSSGSGKSTVISLLERF 366 (1224)
Q Consensus 345 ~~~ivG~sGsGKSTl~~ll~~~ 366 (1224)
++||||-.-+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 7899999999999999999964
|