Citrus Sinensis ID: 047176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MGSSKTIMDLFQPAAKRFKLSSPHCCASDNTPNSEPLLQVVSRKLPLSSKSSGSSSATTTSLTAEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ
ccccccHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHcccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccc
ccccccHHHHcccccHHcccccccccccccccccccccccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEccHHHccHHHHHccHHHccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHcc
MGSSKTIMDLFQPaakrfklssphccasdntpnseplLQVVSrklplsskssgsssattTSLTAEQQSRIEFNRYVAKSKRNLKACSQKVSKakeegsgyvKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEikdsgvdifppqhlifnalnttpfdrvkaviigqdpyhgpgqamglsfsvpegvkipsSLANIFKEIHqdvgcrlpshgnlekwavq
MGSSKTIMDLFQPAAKRFKLSSPHCCASDNTPNSEPLLQVVSRKLPLsskssgsssatttsltaeqqsriEFNRYVAKSKRNLKACSQkvskakeegsgyvKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGcrlpshgnlekwavq
MGSSKTIMDLFQPAAKRFKLSSPHCCASDNTPNSEPLLQVVSRKLPLsskssgsssatttsltAEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKleellaeetwlevlHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ
**************************************************************************************************GYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLP***********
***SKTI**************************************************************************************************LLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ
MGSSKTIMDLFQPAAKRFKLSSPHCCASDNTPNSEPLLQVVSRK*********************QQSRIEFNRYVAKSK*****************SGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ
***************************************************************AEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGSSKTIMDLFQPAAKRFKLSSPHCCASDNTPNSEPLLQVVSRKLPLSSKSSGSSSATTTSLTAEQQSRIEFNRYxxxxxxxxxxxxxxxxxxxxxGSGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
C1DQR0 232 Uracil-DNA glycosylase OS yes no 0.509 0.487 0.570 2e-33
A7I0A8 235 Uracil-DNA glycosylase OS yes no 0.536 0.506 0.572 1e-32
B6J089 229 Uracil-DNA glycosylase OS yes no 0.504 0.489 0.584 1e-31
Q64PM3 220 Uracil-DNA glycosylase 2 yes no 0.504 0.509 0.596 1e-31
Q5L9D9 220 Uracil-DNA glycosylase 2 yes no 0.504 0.509 0.596 1e-31
B6J738 229 Uracil-DNA glycosylase OS yes no 0.504 0.489 0.584 1e-31
A9KCD5 225 Uracil-DNA glycosylase OS yes no 0.504 0.497 0.584 1e-31
A7GVX1 231 Uracil-DNA glycosylase OS yes no 0.531 0.510 0.556 2e-31
Q83CW4 229 Uracil-DNA glycosylase OS yes no 0.504 0.489 0.575 2e-31
Q02HQ1 231 Uracil-DNA glycosylase OS yes no 0.509 0.489 0.578 2e-31
>sp|C1DQR0|UNG_AZOVD Uracil-DNA glycosylase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ung PE=3 SV=1 Back     alignment and function desciption
 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 85/114 (74%), Gaps = 1/114 (0%)

Query: 109 EETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIG 168
           E +W E LH E +KPY + L +F+ +E K +G +I+PP  LIFNAL++TP D+VK VIIG
Sbjct: 11  EASWKEALHDEFEKPYMQELSDFLRRE-KAAGKEIYPPGSLIFNALDSTPLDQVKVVIIG 69

Query: 169 QDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222
           QDPYHGPGQA GL FSV  GV +P SL NIFKE+ +D+   +P HG+L++WA Q
Sbjct: 70  QDPYHGPGQAHGLCFSVQPGVPVPPSLQNIFKELKRDLNIDIPKHGHLQRWAEQ 123
Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
Azotobacter vinelandii (strain DJ / ATCC BAA-1303) (taxid: 322710)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 2EC: 7
>sp|A7I0A8|UNG_CAMHC Uracil-DNA glycosylase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|B6J089|UNG_COXB2 Uracil-DNA glycosylase OS=Coxiella burnetii (strain CbuG_Q212) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|Q64PM3|UNG2_BACFR Uracil-DNA glycosylase 2 OS=Bacteroides fragilis (strain YCH46) GN=ung2 PE=3 SV=1 Back     alignment and function description
>sp|Q5L9D9|UNG2_BACFN Uracil-DNA glycosylase 2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ung2 PE=3 SV=1 Back     alignment and function description
>sp|B6J738|UNG_COXB1 Uracil-DNA glycosylase OS=Coxiella burnetii (strain CbuK_Q154) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|A9KCD5|UNG_COXBN Uracil-DNA glycosylase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ung PE=3 SV=2 Back     alignment and function description
>sp|A7GVX1|UNG_CAMC5 Uracil-DNA glycosylase OS=Campylobacter curvus (strain 525.92) GN=ung PE=3 SV=1 Back     alignment and function description
>sp|Q83CW4|UNG_COXBU Uracil-DNA glycosylase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=ung PE=1 SV=1 Back     alignment and function description
>sp|Q02HQ1|UNG_PSEAB Uracil-DNA glycosylase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ung PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
147836418281 hypothetical protein VITISV_028740 [Viti 0.729 0.576 0.771 2e-71
356544588303 PREDICTED: uracil-DNA glycosylase-like [ 0.869 0.636 0.593 1e-69
255560969 332 uracil DNA glycosylase, putative [Ricinu 0.882 0.590 0.622 6e-69
359473659 328 PREDICTED: uracil-DNA glycosylase [Vitis 0.995 0.673 0.651 8e-69
297834770 329 uracil DNA glycosylase family protein [A 0.986 0.665 0.617 9e-68
297738247321 unnamed protein product [Vitis vinifera] 0.729 0.504 0.777 1e-67
15230152 330 uracil dna glycosylase [Arabidopsis thal 0.995 0.669 0.592 1e-65
449445338318 PREDICTED: uracil-DNA glycosylase-like [ 0.905 0.632 0.572 5e-62
357166696310 PREDICTED: uracil-DNA glycosylase-like [ 0.891 0.638 0.545 4e-54
32488054303 OSJNBa0018M05.3 [Oryza sativa Japonica G 0.684 0.501 0.645 7e-54
>gi|147836418|emb|CAN75314.1| hypothetical protein VITISV_028740 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 144/162 (88%)

Query: 61  SLTAEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKLEELLAEETWLEVLHGEL 120
           +LTA Q+SRIEFN+++A SKRNL  CSQKVSK+K EG G+V+LE+LL EETWL+ L GE 
Sbjct: 53  TLTAHQKSRIEFNKFLAISKRNLTICSQKVSKSKAEGVGFVELEDLLVEETWLDALPGEF 112

Query: 121 QKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMG 180
           QKPYAK LC F+E+E+  SGV I+PPQHLIFNALN+TPFDRVKAVIIGQDPYHGPGQAMG
Sbjct: 113 QKPYAKTLCRFLEREVCGSGVPIYPPQHLIFNALNSTPFDRVKAVIIGQDPYHGPGQAMG 172

Query: 181 LSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222
           LSFSVPEGVK+PSSL NIFKE+ QD+GC +PSHGNLEKWAVQ
Sbjct: 173 LSFSVPEGVKVPSSLVNIFKELQQDLGCSIPSHGNLEKWAVQ 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356544588|ref|XP_003540731.1| PREDICTED: uracil-DNA glycosylase-like [Glycine max] Back     alignment and taxonomy information
>gi|255560969|ref|XP_002521497.1| uracil DNA glycosylase, putative [Ricinus communis] gi|223539294|gb|EEF40886.1| uracil DNA glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359473659|ref|XP_002271878.2| PREDICTED: uracil-DNA glycosylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297834770|ref|XP_002885267.1| uracil DNA glycosylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331107|gb|EFH61526.1| uracil DNA glycosylase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297738247|emb|CBI27448.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15230152|ref|NP_188493.1| uracil dna glycosylase [Arabidopsis thaliana] gi|9294324|dbj|BAB02221.1| uracil-DNA glycosylase-like protein [Arabidopsis thaliana] gi|21537176|gb|AAM61517.1| uracil-DNA glycosylase, putative [Arabidopsis thaliana] gi|115646763|gb|ABJ17110.1| At3g18630 [Arabidopsis thaliana] gi|332642603|gb|AEE76124.1| uracil dna glycosylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449445338|ref|XP_004140430.1| PREDICTED: uracil-DNA glycosylase-like [Cucumis sativus] gi|449518103|ref|XP_004166083.1| PREDICTED: uracil-DNA glycosylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357166696|ref|XP_003580805.1| PREDICTED: uracil-DNA glycosylase-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|32488054|emb|CAE03228.1| OSJNBa0018M05.3 [Oryza sativa Japonica Group] gi|222629761|gb|EEE61893.1| hypothetical protein OsJ_16593 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
TAIR|locus:2086904 330 UNG "uracil dna glycosylase" [ 0.986 0.663 0.561 2e-56
TIGR_CMR|CBU_0988 229 CBU_0988 "uracil-DNA glycosyla 0.463 0.449 0.596 4.4e-29
TIGR_CMR|SO_3654 218 SO_3654 "uracil-DNA glycosylas 0.450 0.458 0.519 1.6e-24
UNIPROTKB|Q9KPK8 226 ung "Uracil-DNA glycosylase" [ 0.463 0.455 0.514 2.9e-23
TIGR_CMR|VC_2359 226 VC_2359 "uracil-DNA glycosylas 0.463 0.455 0.514 2.9e-23
UNIPROTKB|P12295 229 ung "uracil-DNA glycosylase" [ 0.463 0.449 0.514 1e-22
WB|WBGene00013241 282 ung-1 [Caenorhabditis elegans 0.463 0.365 0.485 3.4e-22
DICTYBASE|DDB_G0273013 597 uglB "uracil glycosylase" [Dic 0.468 0.174 0.481 1.2e-21
TIGR_CMR|CJE_0081 231 CJE_0081 "uracil-DNA glycosyla 0.463 0.445 0.5 1.5e-21
ZFIN|ZDB-GENE-040426-900 291 unga "uracil-DNA glycosylase a 0.459 0.350 0.495 1.6e-21
TAIR|locus:2086904 UNG "uracil dna glycosylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 128/228 (56%), Positives = 146/228 (64%)

Query:     1 MGSS--KTIMDLFQPAAKRFKLS--SPHCCASDNTPNSEPLLQVVSRKLPLXXXXXXXXX 56
             M SS  KT+MD FQPA KR K S  S    A      S  L  V +   P          
Sbjct:     1 MASSTPKTLMDFFQPA-KRLKASPSSSSFPAVSVAGGSRDLGSVANS--PPRVTVTTSVA 57

Query:    57 XXXXXXXAEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKXXXXXXXXXXXXXX 116
                     EQ +R EFN++VAKSKRNL  CS++V+KAK EG+ YV               
Sbjct:    58 DDSSGLTPEQIARAEFNKFVAKSKRNLAVCSERVTKAKSEGNCYVPLSELLVEESWLKAL 117

Query:   117 HGELQKPYAKRLCEFVEKEI-KDSGVD-IFPPQHLIFNALNTTPFDRVKAVIIGQDPYHG 174
              GE  KPYAK L +F+E+EI  DS    I+PPQHLIFNALNTTPFDRVK VIIGQDPYHG
Sbjct:   118 PGEFHKPYAKSLSDFLEREIITDSKSPLIYPPQHLIFNALNTTPFDRVKTVIIGQDPYHG 177

Query:   175 PGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222
             PGQAMGLSFSVPEG K+PSSL NIFKE+H+DVGC +P HGNL+KWAVQ
Sbjct:   178 PGQAMGLSFSVPEGEKLPSSLLNIFKELHKDVGCSIPRHGNLQKWAVQ 225
GO:0004844 "uracil DNA N-glycosylase activity" evidence=IEA;ISS;IDA
GO:0006281 "DNA repair" evidence=ISS
GO:0006284 "base-excision repair" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0005739 "mitochondrion" evidence=IDA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
TIGR_CMR|CBU_0988 CBU_0988 "uracil-DNA glycosylase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3654 SO_3654 "uracil-DNA glycosylase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPK8 ung "Uracil-DNA glycosylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2359 VC_2359 "uracil-DNA glycosylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P12295 ung "uracil-DNA glycosylase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
WB|WBGene00013241 ung-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273013 uglB "uracil glycosylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0081 CJE_0081 "uracil-DNA glycosylase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-900 unga "uracil-DNA glycosylase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.27LOW CONFIDENCE prediction!
3rd Layer3.2.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021219001
RecName- Full=Uracil-DNA glycosylase; EC=3.2.2.-;; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity) (328 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00024178001
RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa)
   •• • 0.871
GSVIVG00013338001
SubName- Full=Chromosome undetermined scaffold_463, whole genome shotgun sequence; (476 aa)
•     • 0.868
GSVIVG00000640001
RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)
•  •  • 0.862
GSVIVG00001931001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (291 aa)
•   • • 0.839
GSVIVG00025329001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (263 aa)
   •  • 0.812
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
      • 0.780
GSVIVG00005398001
SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_151, whole gen [...] (185 aa)
•     • 0.777
GSVIVG00019724001
RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)
      • 0.776
GSVIVG00006007001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (796 aa)
      • 0.771
GSVIVG00017250001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (176 aa)
•  •• • 0.755

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
PRK05254 224 PRK05254, PRK05254, uracil-DNA glycosylase; Provis 7e-63
COG0692 223 COG0692, Ung, Uracil DNA glycosylase [DNA replicat 6e-56
cd10027 201 cd10027, UDG_F1, Family 1 of Uracil-DNA glycosylas 4e-51
TIGR00628212 TIGR00628, ung, uracil-DNA glycosylase 1e-49
PHA03199 304 PHA03199, PHA03199, uracil DNA glycosylase; Provis 5e-25
PHA03202 313 PHA03202, PHA03202, uracil DNA glycosylase; Provis 2e-24
PHA03347 252 PHA03347, PHA03347, uracil DNA glycosylase; Provis 2e-22
PHA03204 322 PHA03204, PHA03204, uracil DNA glycosylase; Provis 7e-19
PHA03201 318 PHA03201, PHA03201, uracil DNA glycosylase; Provis 1e-18
PHA03200 255 PHA03200, PHA03200, uracil DNA glycosylase; Provis 4e-13
smart00987135 smart00987, UreE_C, UreE urease accessory protein, 2e-07
smart00986156 smart00986, UDG, Uracil DNA glycosylase superfamil 5e-07
pfam03167143 pfam03167, UDG, Uracil DNA glycosylase superfamily 0.001
>gnl|CDD|235376 PRK05254, PRK05254, uracil-DNA glycosylase; Provisional Back     alignment and domain information 
 Score =  194 bits (497), Expect = 7e-63
 Identities = 67/114 (58%), Positives = 79/114 (69%), Gaps = 1/114 (0%)

Query: 109 EETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIG 168
           E +W EVL  E +KPY + L EF+  E   +G  I+PP   IF A N TPFD VK VI+G
Sbjct: 7   EPSWKEVLKPEFKKPYFQELLEFLRAERA-AGKTIYPPGEDIFRAFNLTPFDDVKVVILG 65

Query: 169 QDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222
           QDPYHGPGQA GLSFSVP GV IP SL NIFKE+  D+G  +P+HG+L  WA Q
Sbjct: 66  QDPYHGPGQAHGLSFSVPPGVPIPPSLRNIFKELEDDLGFPIPNHGDLTSWAEQ 119

Length = 224
>gnl|CDD|223764 COG0692, Ung, Uracil DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|198425 cd10027, UDG_F1, Family 1 of Uracil-DNA glycosylase (UDG) enzymes Back     alignment and domain information
>gnl|CDD|233060 TIGR00628, ung, uracil-DNA glycosylase Back     alignment and domain information
>gnl|CDD|165466 PHA03199, PHA03199, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165469 PHA03202, PHA03202, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|177588 PHA03347, PHA03347, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165471 PHA03204, PHA03204, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|165467 PHA03200, PHA03200, uracil DNA glycosylase; Provisional Back     alignment and domain information
>gnl|CDD|214957 smart00987, UreE_C, UreE urease accessory protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|214956 smart00986, UDG, Uracil DNA glycosylase superfamily Back     alignment and domain information
>gnl|CDD|217399 pfam03167, UDG, Uracil DNA glycosylase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
KOG2994 297 consensus Uracil DNA glycosylase [Replication, rec 100.0
COG0692 223 Ung Uracil DNA glycosylase [DNA replication, recom 100.0
PHA03202 313 uracil DNA glycosylase; Provisional 100.0
PHA03204 322 uracil DNA glycosylase; Provisional 100.0
PHA03201 318 uracil DNA glycosylase; Provisional 100.0
PHA03199 304 uracil DNA glycosylase; Provisional 100.0
TIGR00628212 ung uracil-DNA glycosylase. This family is based o 100.0
PHA03347 252 uracil DNA glycosylase; Provisional 100.0
PHA03200 255 uracil DNA glycosylase; Provisional 100.0
PRK05254 224 uracil-DNA glycosylase; Provisional 100.0
PF03167152 UDG: Uracil DNA glycosylase superfamily; InterPro: 94.26
>KOG2994 consensus Uracil DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-54  Score=380.05  Aligned_cols=158  Identities=44%  Similarity=0.749  Sum_probs=142.7

Q ss_pred             CCCCCCHHHHhHHHHhHHHHHhHhhHhhhhhhhchhhhcCCCccchhhccccccHHHHhhhhhChHHHHHHHHHHHHHHh
Q 047176           58 TTTSLTAEQQSRIEFNRYVAKSKRNLKACSQKVSKAKEEGSGYVKLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIK  137 (222)
Q Consensus        58 ~~~~ls~eq~~r~~~nk~~A~~kr~~~l~~~~~~~ak~~~~~~~~l~~~~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~  137 (222)
                      .++.|.+||+-+-+.|..  +.+++...+++++..++.   .++.|++.+++++|+..|.+||.|+||.+|.+||.+|++
T Consensus        33 ~~~ai~~e~~~~a~e~~~--~~k~~~~~~~E~l~~~~r---~ll~Le~~~~~esW~~~L~~EF~KpYf~~lk~Fl~~E~~  107 (297)
T KOG2994|consen   33 SSAAIKPEKKPAAKENPS--KSKLNAPVSAENLTKAQR---ALLRLEERTIGESWFKHLKGEFGKPYFIKLKGFLAEERN  107 (297)
T ss_pred             cccccCcccccccccCCC--CCcccccccHhhhhHHHH---HHhhHHHhhcChHHHHhhhhhhcCHHHHHHHHHHHHhhc
Confidence            455688888888888877  556666677777766444   678888888999999999999999999999999999986


Q ss_pred             cCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCc
Q 047176          138 DSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNL  216 (222)
Q Consensus       138 ~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL  216 (222)
                      .  .+||||+++||+|+++||+++||||||||||||++||||||||||++|++.||||+||||||+.|| ||.+|.||||
T Consensus       108 ~--~~vfPP~~~Ift~~~~~P~~kvKVVIiGQDPYHn~nQAhGLsFSV~~gvp~PPSLkNIYkEl~~Di~df~~P~hGdL  185 (297)
T KOG2994|consen  108 S--YTVFPPPHQIFTWTRLTPFDKVKVVIIGQDPYHNPNQAHGLSFSVQPGVPPPPSLKNIYKELSSDIEDFVIPKHGDL  185 (297)
T ss_pred             C--CcccCCHHHhhhhhhcccccceeEEEeccCCCCCCcccceeeeecCCCCCCCchHHHHHHHHhccccccccCCCCCc
Confidence            3  579999999999999999999999999999999999999999999999999999999999999999 6999999999


Q ss_pred             cccccC
Q 047176          217 EKWAVQ  222 (222)
Q Consensus       217 ~~WAkQ  222 (222)
                      ++||+|
T Consensus       186 ~~WA~Q  191 (297)
T KOG2994|consen  186 SGWAKQ  191 (297)
T ss_pred             hhhhhc
Confidence            999998

>COG0692 Ung Uracil DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA03202 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03204 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03201 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03199 uracil DNA glycosylase; Provisional Back     alignment and domain information
>TIGR00628 ung uracil-DNA glycosylase Back     alignment and domain information
>PHA03347 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PHA03200 uracil DNA glycosylase; Provisional Back     alignment and domain information
>PRK05254 uracil-DNA glycosylase; Provisional Back     alignment and domain information
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
3tr7_A 232 Structure Of A Uracil-Dna Glycosylase (Ung) From Co 6e-30
3ufm_A 255 Co-Crystal Structure Of Deinococcus Radiodurans Ura 1e-23
2boo_A 247 The Crystal Structure Of Uracil-Dna N-Glycosylase ( 1e-23
2jhq_A 226 Crystal Structure Of Uracil Dna-Glycosylase From Vi 2e-23
2uug_A 229 Escherichia Coli Uracil-Dna Glycosylase:inhibitor C 3e-23
1uug_A 229 Escherichia Coli Uracil-Dna Glycosylase:inhibitor C 3e-23
1eui_A 228 Escherichia Coli Uracil-Dna Glycosylase Complex Wit 3e-23
3uf7_A 237 Co-Crystal Structure Of Escherichia Coli Uracil-Dna 3e-23
4eug_A 229 Crystallographic And Enzymatic Studies Of An Active 4e-23
1eug_A 229 Crystal Structure Of Escherichia Coli Uracil Dna Gl 4e-23
2eug_A 229 Crystal Structure Of Escherichia Coli Uracil Dna Gl 2e-22
1flz_A 228 Uracil Dna Glycosylase With Uaap Length = 228 2e-22
3tkb_A 223 Crystal Structure Of Human Uracil-Dna Glycosylase D 5e-19
1yuo_A 223 Optimisation Of The Surface Electrostatics As A Str 2e-18
2ssp_E 223 Leucine-272-Alanine Uracil-Dna Glycosylase Bound To 3e-18
1okb_A 223 Crystal Structure Of Uracil-Dna Glycosylase From At 3e-18
1ugh_E 223 Crystal Structure Of Human Uracil-Dna Glycosylase I 3e-18
3cxm_A 268 Leishmania Naiffi Uracil-Dna Glycosylase In Complex 8e-18
4skn_E 223 A Nucleotide-flipping Mechanism From The Structure 9e-18
2zhx_A 238 Crystal Structure Of Uracil-Dna Glycosylase From My 1e-15
1udi_E 244 Nucleotide Mimicry In The Crystal Structure Of The 9e-13
2c53_A 244 A Comparative Study Of Uracil Dna Glycosylases From 3e-12
2j8x_A 231 Epstein-Barr Virus Uracil-Dna Glycosylase In Comple 3e-11
>pdb|3TR7|A Chain A, Structure Of A Uracil-Dna Glycosylase (Ung) From Coxiella Burnetii Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 119 ELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQA 178
           E Q+PY + + +FV+KE + +G  I+PPQ  IFNAL  TP++ +K VI+GQDPYHGP QA
Sbjct: 20  EKQEPYFQEILDFVKKE-RKAGKIIYPPQKDIFNALKLTPYEAIKVVILGQDPYHGPNQA 78
Query: 179 MGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ 222
            GL+FSV  GV  P SL NIFKE+H D+G  +PSHG LEKWA Q
Sbjct: 79  HGLAFSVRPGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAKQ 122
>pdb|3UFM|A Chain A, Co-Crystal Structure Of Deinococcus Radiodurans Uracil-Dna Glycosylase And The C-Terminus Of The Single-Stranded Dna-Binding Protein Length = 255 Back     alignment and structure
>pdb|2BOO|A Chain A, The Crystal Structure Of Uracil-Dna N-Glycosylase (Ung) From Deinococcus Radiodurans Length = 247 Back     alignment and structure
>pdb|2JHQ|A Chain A, Crystal Structure Of Uracil Dna-Glycosylase From Vibrio Cholerae Length = 226 Back     alignment and structure
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex With H187d Mutant Udg And Wild-Type Ugi Length = 229 Back     alignment and structure
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex With Wild-Type Udg And Wild-Type Ugi Length = 229 Back     alignment and structure
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With Uracil- Dna Glycosylase Inhibitor Protein Length = 228 Back     alignment and structure
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna Glycosylase And A C-Terminal Fragement Of The Single-Stranded Dna-Binding Protein Length = 237 Back     alignment and structure
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site Variant H187q Of Escherichia Coli Uracil Dna Glycosylase: Crystal Structures Of Mutant H187q And Its Uracil Complex Length = 229 Back     alignment and structure
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna Glycosylase And Its Complexes With Uracil And Glycerol: Structure And Glycosylase Mechanism Revisited Length = 229 Back     alignment and structure
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna Glycosylase And Its Complexes With Uracil And Glycerol: Structure And Glycosylase Mechanism Revisited Length = 229 Back     alignment and structure
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap Length = 228 Back     alignment and structure
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase D183gK302R MUTANT Length = 223 Back     alignment and structure
>pdb|1YUO|A Chain A, Optimisation Of The Surface Electrostatics As A Strategy For Cold Adaptation Of Uracil-Dna N-Glycosylase (Ung)from Atlantic Cod (Gadus Morhua) Length = 223 Back     alignment and structure
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic Site-Containing Dna Length = 223 Back     alignment and structure
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic Cod (Gadus Morhua) Length = 223 Back     alignment and structure
>pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In Complex With A Protein Inhibitor: Protein Mimicry Of Dna Length = 223 Back     alignment and structure
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With 5-Bromouracil Length = 268 Back     alignment and structure
>pdb|4SKN|E Chain E, A Nucleotide-flipping Mechanism From The Structure Of Human Uracil-dna Glycosylase Bound To Dna Length = 223 Back     alignment and structure
>pdb|2ZHX|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Mycobacterium Tuberculosis In Complex With A Proteinaceous Inhibitor Length = 238 Back     alignment and structure
>pdb|1UDI|E Chain E, Nucleotide Mimicry In The Crystal Structure Of The Uracil- Dna Glycosylase-Uracil Glycosylase Inhibitor Protein Complex Length = 244 Back     alignment and structure
>pdb|2C53|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human And Herpes Simplex Virus Type 1 Length = 244 Back     alignment and structure
>pdb|2J8X|A Chain A, Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With Ugi From Pbs-2 Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
3tr7_A 232 UDG, uracil-DNA glycosylase; DNA metabolism, hydro 3e-67
4eug_A 229 UDG, UNG, protein (glycosylase); hydrolase; 1.40A 6e-65
1udg_A 244 Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes s 2e-64
3fci_A 223 UDG, uracil-DNA glycosylase; DNA repair, alternati 1e-63
2boo_A 247 UDG, uracil-DNA glycosylase; base excision repair, 8e-63
3cxm_A 268 Uracil-DNA glycosylase; base excision repair, BER, 6e-62
3a7n_A 238 UDG, uracil-DNA glycosylase; UNG-UGI interactions, 8e-58
2j8x_A 231 Uracil-DNA glycosylase; hydrolase-inhibitor comple 1e-57
2owr_A 218 UDG, uracil-DNA glycosylase; uracil-DNA glycosylas 3e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii} Length = 232 Back     alignment and structure
 Score =  205 bits (525), Expect = 3e-67
 Identities = 65/121 (53%), Positives = 84/121 (69%), Gaps = 1/121 (0%)

Query: 102 KLEELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDR 161
            +  +   +TW  VL  E Q+PY + + +FV+KE + +G  I+PPQ  IFNAL  TP++ 
Sbjct: 3   AMTTMAETQTWQTVLGEEKQEPYFQEILDFVKKE-RKAGKIIYPPQKDIFNALKLTPYEA 61

Query: 162 VKAVIIGQDPYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAV 221
           +K VI+GQDPYHGP QA GL+FSV  GV  P SL NIFKE+H D+G  +PSHG LEKWA 
Sbjct: 62  IKVVILGQDPYHGPNQAHGLAFSVRPGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAK 121

Query: 222 Q 222
           Q
Sbjct: 122 Q 122
>4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A Length = 229 Back     alignment and structure
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A* Length = 244 Back     alignment and structure
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A Length = 223 Back     alignment and structure
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans} Length = 247 Back     alignment and structure
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi} Length = 268 Back     alignment and structure
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A* Length = 238 Back     alignment and structure
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1 Length = 231 Back     alignment and structure
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C Length = 218 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
3tr7_A 232 UDG, uracil-DNA glycosylase; DNA metabolism, hydro 100.0
3fci_A 223 UDG, uracil-DNA glycosylase; DNA repair, alternati 100.0
3uf7_A 237 UDG, uracil-DNA glycosylase; glycosylase, SSB C-te 100.0
3cxm_A 268 Uracil-DNA glycosylase; base excision repair, BER, 100.0
2boo_A 247 UDG, uracil-DNA glycosylase; base excision repair, 100.0
1udg_A 244 Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes s 100.0
2j8x_A 231 Uracil-DNA glycosylase; hydrolase-inhibitor comple 100.0
3a7n_A 238 UDG, uracil-DNA glycosylase; UNG-UGI interactions, 100.0
2owr_A 218 UDG, uracil-DNA glycosylase; uracil-DNA glycosylas 100.0
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=5.2e-50  Score=351.04  Aligned_cols=115  Identities=57%  Similarity=0.956  Sum_probs=109.4

Q ss_pred             cccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecccC
Q 047176          107 LAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFSVP  186 (222)
Q Consensus       107 ~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFSV~  186 (222)
                      .++++|+++|.+|+.++||++|.+||.+|++.+ .+|||+.++||+||++||+++||||||||||||++||||||||||+
T Consensus         8 ~~~~~W~~~L~~e~~k~yf~~l~~fl~~e~~~g-~~i~P~~~~iF~af~~tp~~~VKVVIlGQDPYh~~gqA~GLaFSV~   86 (232)
T 3tr7_A            8 AETQTWQTVLGEEKQEPYFQEILDFVKKERKAG-KIIYPPQKDIFNALKLTPYEAIKVVILGQDPYHGPNQAHGLAFSVR   86 (232)
T ss_dssp             --CCCHHHHSHHHHHSHHHHHHHHHHHHHHHTT-CCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCSSSSSCCC
T ss_pred             CCChhHHHHHHHHhccHHHHHHHHHHHHHHHcC-CEEeCCHHHHHHHHhcCCccceEEEEEecCCCCCCCCeEEEEEecC
Confidence            457899999999999999999999999999765 4599999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHHHhccCCCCCCCCCccccccC
Q 047176          187 EGVKIPSSLANIFKEIHQDVGCRLPSHGNLEKWAVQ  222 (222)
Q Consensus       187 ~~v~iPpSLrNIyKEL~~D~g~~~p~hGdL~~WAkQ  222 (222)
                      +++++||||+||||||.+|+|+..|.||||++||+|
T Consensus        87 ~~v~~PpSL~NI~kEL~~d~g~~~p~~G~L~~WA~Q  122 (232)
T 3tr7_A           87 PGVPAPPSLQNIFKELHADLGVSIPSHGFLEKWAKQ  122 (232)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHCCCCCSSCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCCCCCCcHhHHhC
Confidence            999999999999999999999999999999999997
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A Back     alignment and structure
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A Back     alignment and structure
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi} Back     alignment and structure
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans} Back     alignment and structure
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A* Back     alignment and structure
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1 Back     alignment and structure
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A* Back     alignment and structure
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d3euga_ 225 c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia 6e-35
d2hxma1 223 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human 3e-33
d2j8xa1 230 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstei 1e-32
d1laue_ 228 c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simpl 8e-31
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Uracil-DNA glycosylase
domain: Uracil-DNA glycosylase
species: Escherichia coli [TaxId: 562]

 Score =  121 bits (305), Expect = 6e-35
 Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 111 TWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQD 170
           TW +VL  E Q+P+     + V  E + SGV I+PPQ  +FNA   T    VK VI+GQD
Sbjct: 2   TWHDVLAEEKQQPHFLNTLQTVASE-RQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQD 60

Query: 171 PYHGPGQAMGLSFSVPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ 222
           PYHGPGQA GL+FSV  G+ IP SL N++KE+   + G   P+HG LE WA Q
Sbjct: 61  PYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQ 113
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 223 Back     information, alignment and structure
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]} Length = 230 Back     information, alignment and structure
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]} Length = 228 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1laue_ 228 Uracil-DNA glycosylase {Herpes simplex virus type 100.0
d2hxma1 223 Uracil-DNA glycosylase {Human (Homo sapiens) [TaxI 100.0
d3euga_ 225 Uracil-DNA glycosylase {Escherichia coli [TaxId: 5 100.0
d2j8xa1 230 Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 100.0
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Uracil-DNA glycosylase
domain: Uracil-DNA glycosylase
species: Herpes simplex virus type 1 [TaxId: 10298]

Probab=100.00  E-value=8.4e-46  Score=321.58  Aligned_cols=116  Identities=36%  Similarity=0.655  Sum_probs=109.7

Q ss_pred             hccccccHHHHhhhhhChHHHHHHHHHHHHHHhcCCCeeeCCcchhhhhhhcCCCCCeEEEEEcCCCCCCCCCCceeecc
Q 047176          105 ELLAEETWLEVLHGELQKPYAKRLCEFVEKEIKDSGVDIFPPQHLIFNALNTTPFDRVKAVIIGQDPYHGPGQAMGLSFS  184 (222)
Q Consensus       105 ~~~i~~sW~~~L~~e~~k~yf~~L~~fl~~e~~~~~~~I~P~~~~IF~af~~tp~~~VKVVILGQDPYh~pgqA~GLAFS  184 (222)
                      ++.++++|+++|.+|+.++||++|.+||.++++.  .+|||+.++||+||++||+++||||||||||||++|||||||||
T Consensus         9 ~~~i~~sW~~~L~~e~~~~~~~~l~~~l~~~~~~--~~i~P~~~~IF~af~~~~~~~vKVVIlGQDPYh~~~~A~GLaFs   86 (228)
T d1laue_           9 VFLIDDAWRPLMEPELANPLTAHLLAEYNRRCQT--EEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFS   86 (228)
T ss_dssp             HHTCCGGGHHHHGGGGGSHHHHHHHHHHHHHHHH--SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSSSC
T ss_pred             hcCCChHHHHHHHHHHccHHHHHHHHHHHHHHcC--CeEECccHHHHHHHHcCChhhceEEEEeecCCCccceeeeeecc
Confidence            4567999999999999999999999999998864  35999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccHHHHHHHHHhcc-CCCCCCCCCccccccC
Q 047176          185 VPEGVKIPSSLANIFKEIHQDV-GCRLPSHGNLEKWAVQ  222 (222)
Q Consensus       185 V~~~v~iPpSLrNIyKEL~~D~-g~~~p~hGdL~~WAkQ  222 (222)
                      |++++++|||||||||||.+|+ ++..|.||||+.||+|
T Consensus        87 v~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~Q  125 (228)
T d1laue_          87 VRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARD  125 (228)
T ss_dssp             CCTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHT
T ss_pred             cCCCccchhHHHHHHHHHHhhcCCCcCCCccchhhhccC
Confidence            9999999999999999999999 5778999999999998
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]} Back     information, alignment and structure