Citrus Sinensis ID: 047182

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
MNNRSPVRFSQALSLVLLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAKA
cccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccEEEEEEEccccccccEEEEEEccccccccccccEEEEEEcccHHHHccccccccEEEEEEcccccccccccccccccEEEEEEEEEEEccccHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEccccccccccHHHHHcccc
ccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEccccccccccEEEEccccccccccccEEEEEEcccccHHHHHccccEEEEEEcccccccccccccccccEEEEEEEEEEEEcccHHHHHHHHHHHHHHcccHccccccccEEEEEEEEEEEEEEEcccccccccHHHHHHHcc
mnnrspvrfSQALSLVLLFVVVGtqdsvegrlipaisnkphpndaAAYARWLVSQNSWGVLSTIssglggapfgnvvsfsdglpnegsgvpyfylttldptasnalkdkrsslaiseyplgtcgkrdpedpvcakitltgkLVLVDVNSKAAEFARNALfakhpemkgwpkdhnfqtfkleiddiflinwfggpkpltvdqylhaka
mnnrspvrfsQALSLVLLFVVVGTQDSVEGRLipaisnkphpNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISeyplgtcgkrdpeDPVCAKITLTGKLVLVDVNSKAAEFARNALfakhpemkgwpKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAKA
MNNRSPVRFSQALSLVLLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAKA
********FSQALSLVLLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPT************AISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYL****
******V*FSQALSLVLLFVVVGTQDSV****************AAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHA**
********FSQALSLVLLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAKA
*NNRSPVRFSQALSLVLLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAKA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNNRSPVRFSQALSLVLLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
Q8IUH2290 Protein CREG2 OS=Homo sap yes no 0.806 0.575 0.375 1e-30
O75629220 Protein CREG1 OS=Homo sap no no 0.777 0.731 0.407 4e-30
Q8BGC9288 Protein CREG2 OS=Mus musc yes no 0.792 0.569 0.370 4e-29
O88668220 Protein CREG1 OS=Mus musc no no 0.821 0.772 0.366 1e-27
Q5ZJ73192 Protein CREG1 OS=Gallus g no no 0.797 0.859 0.393 1e-25
>sp|Q8IUH2|CREG2_HUMAN Protein CREG2 OS=Homo sapiens GN=CREG2 PE=1 SV=1 Back     alignment and function desciption
 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 37  SNKPHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFY 94
           S  P P   AA AR L   + WG L+T+S+   + G PFGN +  SDG  N  +G+P+FY
Sbjct: 115 SAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPFFY 174

Query: 95  LTTLDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAA 152
           +T  DP  ++ +K+  +SL + E     C K   DPEDP C ++TLTG+++ V  + +  
Sbjct: 175 MTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQLTLTGQMIAV--SPEEV 232

Query: 153 EFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHA 205
           EFA+ A+F++HP M+ WP+ + +   K+ I+ I+L  W+GG   ++ ++Y  A
Sbjct: 233 EFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWLQKWYGGASSISREEYFKA 285

Homo sapiens (taxid: 9606)
>sp|O75629|CREG1_HUMAN Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BGC9|CREG2_MOUSE Protein CREG2 OS=Mus musculus GN=Creg2 PE=1 SV=1 Back     alignment and function description
>sp|O88668|CREG1_MOUSE Protein CREG1 OS=Mus musculus GN=Creg1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ73|CREG1_CHICK Protein CREG1 OS=Gallus gallus GN=CREG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
118488211208 unknown [Populus trichocarpa] 0.913 0.908 0.774 1e-82
224056881191 predicted protein [Populus trichocarpa] 0.908 0.984 0.778 2e-82
225452574209 PREDICTED: protein CREG1 [Vitis vinifera 0.922 0.913 0.769 3e-81
255552734201 Protein CREG1 precursor, putative [Ricin 0.956 0.985 0.73 1e-80
388494214239 unknown [Lotus japonicus] 0.951 0.824 0.686 2e-76
351721270202 uncharacterized protein LOC100306499 [Gl 0.859 0.881 0.743 9e-75
357503801208 Protein CREG1 [Medicago truncatula] gi|3 0.859 0.855 0.737 2e-74
388494576208 unknown [Medicago truncatula] 0.859 0.855 0.731 1e-73
147852955 1399 hypothetical protein VITISV_006146 [Viti 0.859 0.127 0.716 1e-73
449449180213 PREDICTED: protein CREG2-like [Cucumis s 0.946 0.920 0.656 4e-71
>gi|118488211|gb|ABK95925.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/191 (77%), Positives = 167/191 (87%), Gaps = 2/191 (1%)

Query: 17  LLFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNV 76
           L F++VG QDSV+GRL+  + NKP PND AA ARWLVSQNSWGVL+TISS LGGAPFGNV
Sbjct: 13  LFFLLVGFQDSVQGRLL--LINKPDPNDPAASARWLVSQNSWGVLNTISSDLGGAPFGNV 70

Query: 77  VSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKI 136
           VSFSDGLP +GSG+PYFYLTTLDPTA NAL+D+RSS  ISEYPLGTCGK+DPE+P CAKI
Sbjct: 71  VSFSDGLPGKGSGIPYFYLTTLDPTAKNALQDQRSSFTISEYPLGTCGKKDPENPSCAKI 130

Query: 137 TLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKP 196
           TLTGKL ++  NSK AE A++ALF KHPEM+GWPK HNFQ FKL+I+DIFLINWFGGPKP
Sbjct: 131 TLTGKLKVLKENSKEAEIAKSALFVKHPEMRGWPKGHNFQFFKLDIEDIFLINWFGGPKP 190

Query: 197 LTVDQYLHAKA 207
           LTVDQYLH K 
Sbjct: 191 LTVDQYLHYKV 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056881|ref|XP_002299070.1| predicted protein [Populus trichocarpa] gi|222846328|gb|EEE83875.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452574|ref|XP_002280727.1| PREDICTED: protein CREG1 [Vitis vinifera] gi|296087727|emb|CBI34983.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552734|ref|XP_002517410.1| Protein CREG1 precursor, putative [Ricinus communis] gi|223543421|gb|EEF44952.1| Protein CREG1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388494214|gb|AFK35173.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351721270|ref|NP_001235924.1| uncharacterized protein LOC100306499 [Glycine max] gi|255628717|gb|ACU14703.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357503801|ref|XP_003622189.1| Protein CREG1 [Medicago truncatula] gi|355497204|gb|AES78407.1| Protein CREG1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494576|gb|AFK35354.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449180|ref|XP_004142343.1| PREDICTED: protein CREG2-like [Cucumis sativus] gi|449492655|ref|XP_004159063.1| PREDICTED: protein CREG2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
TAIR|locus:2049234210 AT2G04690 [Arabidopsis thalian 0.898 0.885 0.657 4.7e-64
ZFIN|ZDB-GENE-041114-173279 creg2 "cellular repressor of E 0.821 0.609 0.398 4.7e-32
UNIPROTKB|F1MX50221 CREG1 "Uncharacterized protein 0.855 0.800 0.406 1.3e-31
UNIPROTKB|Q5ZJ73192 CREG1 "Protein CREG1" [Gallus 0.797 0.859 0.410 2.6e-31
UNIPROTKB|O75629220 CREG1 "Protein CREG1" [Homo sa 0.777 0.731 0.407 1.8e-30
UNIPROTKB|F1NRF8184 CREG1 "Protein CREG1" [Gallus 0.806 0.907 0.402 4.9e-30
UNIPROTKB|F1PVI3220 CREG1 "Uncharacterized protein 0.777 0.731 0.401 4.9e-30
UNIPROTKB|J9NRR0217 CREG1 "Uncharacterized protein 0.777 0.741 0.401 4.9e-30
UNIPROTKB|F1S268222 CREG1 "Uncharacterized protein 0.951 0.887 0.370 6.2e-30
UNIPROTKB|Q8IUH2290 CREG2 "Protein CREG2" [Homo sa 0.806 0.575 0.375 1e-29
TAIR|locus:2049234 AT2G04690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 125/190 (65%), Positives = 152/190 (80%)

Query:    18 LFVVVGTQDSVEGRLIPAISNKPHPNDAAAYARWLVSQNSWGVLSTISSGLGGAPFGNVV 77
             +F+ +  Q S   R++     KP  +D AA ARWLVSQNSWGVLST+S    GAPFGNVV
Sbjct:    18 VFLTI-LQQSSSARVLTI--TKPDRHDYAASARWLVSQNSWGVLSTLSVDHKGAPFGNVV 74

Query:    78 SFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISEYPLGTCGKRDPEDPVCAKIT 137
             SFSDGLP +G+G+PYFYLTTLDPTA NALKD+R+SLAISE PLGTC  RDP +P C+K+T
Sbjct:    75 SFSDGLPEKGNGIPYFYLTTLDPTARNALKDQRASLAISESPLGTC-TRDPMNPTCSKLT 133

Query:   138 LTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPL 197
             LTGKL++++  S+ AE A+ ALF KHPEM  WPKDH+F+ FKLEI DIFLINW+GG KP+
Sbjct:   134 LTGKLLILEGGSEEAEVAKKALFTKHPEMMDWPKDHDFRFFKLEIIDIFLINWYGGAKPI 193

Query:   198 TVDQYLHAKA 207
             TVD+YLHAK+
Sbjct:   194 TVDEYLHAKS 203
GO:0005576 "extracellular region" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA
ZFIN|ZDB-GENE-041114-173 creg2 "cellular repressor of E1A-stimulated genes 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX50 CREG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ73 CREG1 "Protein CREG1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O75629 CREG1 "Protein CREG1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRF8 CREG1 "Protein CREG1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVI3 CREG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRR0 CREG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S268 CREG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IUH2 CREG2 "Protein CREG2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.6225.1
SubName- Full=Putative uncharacterized protein; (191 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 1e-75
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score =  224 bits (573), Expect = 1e-75
 Identities = 84/169 (49%), Positives = 108/169 (63%), Gaps = 6/169 (3%)

Query: 40  PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 97
           P   +AA  AR LV +  WG LSTIS+   +GGAPFGNVVS SDG P + +G PYF LT 
Sbjct: 1   PTREEAAKVARTLVHRADWGALSTISTHKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTD 60

Query: 98  LDPTASNALKDKRSSLAISEYPLGTCGK--RDPEDPVCAKITLTGKLVLVDVNSKAAEFA 155
           LD T  N  K+ R+SL +SE   G C K   DPEDP C +ITLTGKL    V S+  +FA
Sbjct: 61  LDSTVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLK--KVPSEERDFA 118

Query: 156 RNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLH 204
           + A F++HP+ K W   HNF  +KLEI++I+L+  FGG   +T ++Y  
Sbjct: 119 KKAFFSRHPDAKDWLPGHNFHFYKLEIENIYLLGGFGGAAYITAEEYYK 167

Length = 167

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 100.0
KOG3374210 consensus Cellular repressor of transcription [Tra 100.0
PRK03467144 hypothetical protein; Provisional 99.77
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.67
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.57
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.56
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.53
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.53
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 99.52
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.38
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 99.38
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.28
COG3871145 Uncharacterized stress protein (general stress pro 99.13
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 99.04
COG3787145 Uncharacterized protein conserved in bacteria [Fun 98.98
PRK06733151 hypothetical protein; Provisional 98.86
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.82
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 98.65
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 98.33
COG5015132 Uncharacterized conserved protein [Function unknow 98.26
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 98.18
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.84
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 97.62
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 97.61
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 97.6
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 97.3
COG2808209 PaiB Transcriptional regulator [Transcription] 95.43
COG3576173 Predicted flavin-nucleotide-binding protein struct 93.98
PF04289177 DUF447: Protein of unknown function (DUF447); Inte 83.49
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=100.00  E-value=1e-44  Score=293.08  Aligned_cols=163  Identities=40%  Similarity=0.721  Sum_probs=126.9

Q ss_pred             CCchHHHHHHHHHHhcCCeEEEEeecC--CCCCCeeEEEeccccCCCCCCCCcEEEEEeCCCcchhhhccCCCeEEEEee
Q 047182           40 PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAISE  117 (207)
Q Consensus        40 ~~~~~~~~~ar~LL~~~~~~vLAT~s~--~~~G~P~~S~v~y~dg~~~~~~g~~y~~~s~~s~h~~NL~~nprvSl~V~~  117 (207)
                      |+.+++++.||+||+.+++|+|||++.  +.+|+||+|+++|+||+..+.+|+|||++|.++.|++||++||||||+|.+
T Consensus         1 P~~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~   80 (170)
T PF13883_consen    1 PTREEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISE   80 (170)
T ss_dssp             --TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEG
T ss_pred             CChHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEec
Confidence            688999999999999999999999998  347999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC--CCCCCCCccceEEEEEEEEEecCChHHHHHHHHHHHHhCCCCCCCCCC---CCeEEEEEEEeEEEEeccCC
Q 047182          118 YPLGTCG--KRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKD---HNFQTFKLEIDDIFLINWFG  192 (207)
Q Consensus       118 ~~~~~~~--~~dp~~~~~~Rvtl~G~~~~v~~~~~e~~~a~~~~~~rhP~~~~~~~~---~df~~~rl~~~~~~~V~GFG  192 (207)
                      .+...|.  ..||++++++|+||+|++++|++  +|.+.++++|++|||+++.|+++   |||.||||+|++++||||||
T Consensus        81 ~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~--~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG  158 (170)
T PF13883_consen   81 PQGGDCDNSGVDPEDPACPRVTLTGRAEPVPP--DEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFG  158 (170)
T ss_dssp             GGSSHHHHHT--TTSTTS-EEEEEEEEEE--T--TTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSS
T ss_pred             CCCCcccccCCCCCCCCCcEEEEEEEEEEcCc--hHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccC
Confidence            9876553  36888889999999999999984  36678999999999999999999   99999999999999999999


Q ss_pred             Cceeechhhhcc
Q 047182          193 GPKPLTVDQYLH  204 (207)
Q Consensus       193 ~a~~v~~~~~~~  204 (207)
                      +++||+.+||++
T Consensus       159 ~~~~i~~~~Y~~  170 (170)
T PF13883_consen  159 GAAWISAEEYYN  170 (170)
T ss_dssp             S-EEE-HHHHHH
T ss_pred             CceEeCHHHhcC
Confidence            999999999974

>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
1xhn_A184 The Crystal Structure Of Cellular Repressor Of E1a- 2e-30
>pdb|1XHN|A Chain A, The Crystal Structure Of Cellular Repressor Of E1a- Stimulated Genes (Creg) Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 6/167 (3%)
Query: 40  PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 97
           P   DAA  AR++   + WG L+TIS+   + G PF +V+S SDG P  GSGVPYFYL+ 
Sbjct: 14  PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 73
Query: 98  LDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAAEFA 155
           L  + SN  ++  ++L  +      C K   DP+ P+C  I L+G   +  VN    + A
Sbjct: 74  LQLSVSNLQENPYATLTXTLAQTNFCKKHGFDPQSPLCVHIXLSG--TVTKVNETEXDIA 131
Query: 156 RNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQY 202
           +++LF +HPE K WP  HN+   KL I +I+++++FGGPK +T ++Y
Sbjct: 132 KHSLFIRHPEXKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEY 178

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 5e-52
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 5e-24
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 2e-19
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 3e-19
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 6e-07
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 2e-05
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
 Score =  164 bits (417), Expect = 5e-52
 Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 6/174 (3%)

Query: 37  SNKPHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFY 94
            + P   DAA  AR++   + WG L+TIS+   + G PF +V+S SDG P  GSGVPYFY
Sbjct: 11  GSLPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFY 70

Query: 95  LTTLDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAA 152
           L+ L  + SN  ++  ++L ++      C K   DP+ P+C  I L+G   +  VN    
Sbjct: 71  LSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGT--VTKVNETEM 128

Query: 153 EFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHAK 206
           + A+++LF +HPEMK WP  HN+   KL I +I+++++FGGPK +T ++Y +  
Sbjct: 129 DIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVT 182
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 100.0
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 100.0
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 99.98
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.97
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.96
2hq7_A146 Protein, related to general stress protein 26(GS2 99.82
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.79
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.79
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.78
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.77
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.77
2re7_A134 Uncharacterized protein; general stress protein CO 99.75
2fhq_A141 Putative general stress protein; alpha-beta struct 99.75
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.73
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.72
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.72
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.7
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.69
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.66
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.66
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.64
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.63
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.62
2qea_A160 Putative general stress protein 26; structural gen 99.62
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.62
2hti_A185 BH0577 protein; structural genomics, joint center 99.61
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.6
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.54
2fur_A209 Hypothetical protein; structural genomics, joint c 99.54
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.51
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.49
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 99.38
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 99.36
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 99.3
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 99.24
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 99.16
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 99.15
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 99.14
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 99.09
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 99.09
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.72
3a6r_A122 FMN-binding protein; electron transport, flavoprot 98.56
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 98.34
3r5z_A145 Putative uncharacterized protein; split barrel-lik 97.84
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 97.8
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 97.78
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
Probab=100.00  E-value=3.1e-39  Score=261.96  Aligned_cols=167  Identities=40%  Similarity=0.778  Sum_probs=148.6

Q ss_pred             CCCCchHHHHHHHHHHhcCCeEEEEeecCCC--CCCeeEEEeccccCCCCCCCCcEEEEEeCCCcchhhhccCCCeEEEE
Q 047182           38 NKPHPNDAAAYARWLVSQNSWGVLSTISSGL--GGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAI  115 (207)
Q Consensus        38 ~~~~~~~~~~~ar~LL~~~~~~vLAT~s~~~--~G~P~~S~v~y~dg~~~~~~g~~y~~~s~~s~h~~NL~~nprvSl~V  115 (207)
                      .+|+.++.+++||+||+++++|+|||++++.  +|+||+|+++|++|++.+.+|.+||++|..++|++||++||||||+|
T Consensus        12 ~~~~~~~~~~~ar~ll~~~~~g~LaTi~~~~~~dG~P~~s~v~~~~~~~~d~~g~~~f~~s~~~~~~~nl~~nprvSl~v   91 (184)
T 1xhn_A           12 SLPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTM   91 (184)
T ss_dssp             CCCCTTCHHHHHHHHHHHCSEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHhCCEEEEEecccCCCCCCcceEEEEEEEeccCcCCCCCEEEEEeCccHhHHHHhhCCCEEEEE
Confidence            3678888999999999999999999998621  49999999999966544678999999999999999999999999999


Q ss_pred             eeCCCCCCCC--CCCCCCccceEEEEEEEEEecCChHHHHHHHHHHHHhCCCCCCCCCCCCeEEEEEEEeEEEEeccCCC
Q 047182          116 SEYPLGTCGK--RDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGG  193 (207)
Q Consensus       116 ~~~~~~~~~~--~dp~~~~~~Rvtl~G~~~~v~~~~~e~~~a~~~~~~rhP~~~~~~~~~df~~~rl~~~~~~~V~GFG~  193 (207)
                      .+++..+|++  .+|.++.++|||++|+++++++  +|++.++++|+++||+++.|.+.+||.||||+|+++++++|||+
T Consensus        92 ~~~~~~~~~~~~~dp~~~~~~rvtl~G~a~~v~d--~e~~~~~~~~~~~hP~~~~~~~~~~~~~~~l~i~~i~~v~gFG~  169 (184)
T 1xhn_A           92 TLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNE--TEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGG  169 (184)
T ss_dssp             EGGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCG--GGHHHHHHHHHHHCGGGGGSCGGGCCEEEEEEEEEEEEECSSSS
T ss_pred             ecCCCccccccCCCCccccCceEEEEEEEEECCh--HHHHHHHHHHHHHCcChhHcccCCCEEEEEEEEeEEEEEccCCc
Confidence            9987544433  4666555899999999999985  36788999999999999999999999999999999999999999


Q ss_pred             ceeechhhhcccC
Q 047182          194 PKPLTVDQYLHAK  206 (207)
Q Consensus       194 a~~v~~~~~~~a~  206 (207)
                      ++||+++||.+|+
T Consensus       170 ~~~v~~~~~~~a~  182 (184)
T 1xhn_A          170 PKIVTPEEYYNVT  182 (184)
T ss_dssp             CEECCHHHHHHCC
T ss_pred             eEEeCHHHHhhcc
Confidence            9999999999886
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 1e-56
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 1e-29
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 2e-18
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (443), Expect = 1e-56
 Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 40  PHPNDAAAYARWLVSQNSWGVLSTISS--GLGGAPFGNVVSFSDGLPNEGSGVPYFYLTT 97
           P   DAA  AR++   + WG L+TIS+   + G PF +V+S SDG P  GSGVPYFYL+ 
Sbjct: 2   PPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSP 61

Query: 98  LDPTASNALKDKRSSLAISEYPLGTCGKR--DPEDPVCAKITLTGKLVLVDVNSKAAEFA 155
           L  + SN  ++  ++L ++      C K   DP+ P+C  I L+G +  V+      + A
Sbjct: 62  LQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVN--ETEMDIA 119

Query: 156 RNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGPKPLTVDQYLHA 205
           +++LF +HPEMK WP  HN+   KL I +I+++++FGGPK +T ++Y + 
Sbjct: 120 KHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV 169
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 100.0
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.98
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.74
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.74
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.73
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.72
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.71
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.7
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.7
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.66
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.65
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 99.56
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 99.5
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.31
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 98.68
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 98.62
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 98.59
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 98.51
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 98.42
d2ptfa1206 Uncharacterized protein MTH863 {Methanobacterium t 89.16
d2imla1189 Hypothetical protein AF1834 {Archaeoglobus fulgidu 88.47
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-48  Score=308.19  Aligned_cols=166  Identities=40%  Similarity=0.781  Sum_probs=154.6

Q ss_pred             CCCchHHHHHHHHHHhcCCeEEEEeecCC--CCCCeeEEEeccccCCCCCCCCcEEEEEeCCCcchhhhccCCCeEEEEe
Q 047182           39 KPHPNDAAAYARWLVSQNSWGVLSTISSG--LGGAPFGNVVSFSDGLPNEGSGVPYFYLTTLDPTASNALKDKRSSLAIS  116 (207)
Q Consensus        39 ~~~~~~~~~~ar~LL~~~~~~vLAT~s~~--~~G~P~~S~v~y~dg~~~~~~g~~y~~~s~~s~h~~NL~~nprvSl~V~  116 (207)
                      .|+++++++.||+|++++++|+|||++.+  .+|+||+|+++|+||+..+.+|.|||++|.++.|++||++||||||+|.
T Consensus         1 ~P~~~~~a~~AR~L~~~~~~g~LsTiS~~~~~~G~P~~s~v~~adg~~~~~~G~P~~llS~la~ht~Nl~~~~~vSL~v~   80 (170)
T d1xhna1           1 LPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMT   80 (170)
T ss_dssp             CCCTTCHHHHHHHHHHHCSEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHhCCEEEEEEcccCCCCCCccceeEEEEeccCCCCCCCCEEEEEcChhHhHHHHhhCCCeEEEEE
Confidence            37899999999999999999999999853  3799999999999998889999999999999999999999999999999


Q ss_pred             eCCCCCCC--CCCCCCCccceEEEEEEEEEecCChHHHHHHHHHHHHhCCCCCCCCCCCCeEEEEEEEeEEEEeccCCCc
Q 047182          117 EYPLGTCG--KRDPEDPVCAKITLTGKLVLVDVNSKAAEFARNALFAKHPEMKGWPKDHNFQTFKLEIDDIFLINWFGGP  194 (207)
Q Consensus       117 ~~~~~~~~--~~dp~~~~~~Rvtl~G~~~~v~~~~~e~~~a~~~~~~rhP~~~~~~~~~df~~~rl~~~~~~~V~GFG~a  194 (207)
                      +.+.+.|.  +.||+++.|+||||+|++++|++  +|.+.++++|++|||+++.|++++||.||||+|++++||||||++
T Consensus        81 ~~~~~~~~~~~~dp~~p~~aRlTl~G~~~~v~~--~e~~~a~~~yl~rHP~a~~w~~~~df~f~~l~i~~i~~vgGFG~~  158 (170)
T d1xhna1          81 LAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNE--TEMDIAKHSLFIRHPEMKTWPSSHNWFFAKLNITNIWVLDYFGGP  158 (170)
T ss_dssp             GGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCG--GGHHHHHHHHHHHCGGGGGSCGGGCCEEEEEEEEEEEEECSSSSC
T ss_pred             ecCCCcccccCCCccCCCCcEEEEEEEEEECCc--HHHHHHHHHHHHHHHHHHhCcccCCeEEEEEEeeEEEEECccCcc
Confidence            99876664  46899899999999999999974  477789999999999999999999999999999999999999999


Q ss_pred             eeechhhhcccC
Q 047182          195 KPLTVDQYLHAK  206 (207)
Q Consensus       195 ~~v~~~~~~~a~  206 (207)
                      .||+.+||++|.
T Consensus       159 ~~i~~~eY~~at  170 (170)
T d1xhna1         159 KIVTPEEYYNVT  170 (170)
T ss_dssp             EECCHHHHHHCC
T ss_pred             eEeCHHHHhhcC
Confidence            999999999884
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure