Citrus Sinensis ID: 047190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020-----
Protein Sequence
MSSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGWHSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQATMDASVPSVPDLCSFLNAFPAA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccEEEcccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccccEEEccccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccHHccccccccEEEcccccccccccHHHHHHcccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHccccccccccccccEEEEcccccccccccEEEEEEEEEEEcccEEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEHHHHHHHHHHHHccccHHHHHHHHHHHHHcEEEEEEHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccHHHHccHcccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHHHHcccccEEEEccccccccccccccccccccccEEEEEcccccccccccHHHHcccccccEEEEcccccccccccHHHcccccccEEEccccccccccHHHHcccccEEEEccccccccccHHHHHcccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHHHcHHcccEEEcccccccccccHHHHHHHHcccEEEcccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHcHHHHccEEEcccccccccccccccccEEEEcccccccccccHHHcccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHccccccccEEEEEccccccccccHHHHccccEEEEEcccccccccccHHHHHHccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccHHHHcccEEEEEEEcccccccccccHHHHHHHHHHEEEcccccEEccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccc
Coil and Loop (DISEMBL)
MSSKCFLLLQYVSLISVILFqleprvansnniISCLDEEKESLLAFKQGLidesgilsswgredekrncckwrgvrcsnktghvlgldlrassdspvdalkgtinpsllklqhltyldlswnnfsgspipefigSLGKLSELALSsaqfagpiphqlgnlsklqVLDLRFNNlfssgnldwlSYLSSlryldladcklskfsNWVQVLSNLRSLTNLylgycdlppistpsllhinysKSLEVIDLsnnyltnsiypwlfnvssnlvdhidlgsnqlhgsiplafghMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNvssgstknssLEWLYLAFNEitgtipdlggfpslqilslennrltgtiSKSIGQLSKLELLLLSGNSLRGVISEALFsnlssldtlqlsdnsltlkfshdwtppfqlfniflgsckigprfpkwlqsqnQTVAldvsnagisdivpdwfwdLTNQLYYLNlsnnemkgklpdlsrkfdsygpgidvssnqfdgpipllppnvsslnlsknkfsgSISFLCSISSHLLTYLDLSnnllsgrlpdcwfqfDSLAILNLannsffgeipdsMSFLRSIGSLSLynnslsgglpsffmngsqltlmdlgknglsgeiptwigeslpnLVVLSLrsnkfhgnipfqlcyLSHIQILDLSLnnisgiipkcfhnftamtkekssnLSIISNYYYnlglrgmlmpliffdtwkggqyeYKSILGLIKIIdlssnklgGKVLEEIMDLVGLVALnlsnnnltgqitprigqlksldfldlsrnhffggipssLSRLRLLSVMDLsynnfsgkipkgtqlqrfgastyagnpelcglplpnkcldeesapspsrddayytpdddgdqfiTLGFYMSMILGFFVGFWGVCGTLLvksswrhgYYNFLTRVKDWLYVEAVVNIAKLQRRIQaapevhgwhsldqSKLLLLVYLRKILLIRtfsnlspcetvpaeqnspqatmdasvpsvpdlcsFLNAFPAA
Flexible Loop (DISEMBL)
MSSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDesgilsswgredekrncckwrgvrcsnktghvlgldlrassdspvDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPevhgwhsldqSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQATMDASVPSVPDLCSFLNAFPAA
Low Complexity Region (SEG)
MSSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNldwlsylsslryldlADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQlsklellllsgnslRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIpllppnvsslnlsknkfsgsisflcsisshlltyldlsnnllsGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIgslslynnslsgglPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKssnlsiisnyyynlGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPsslsrlrllsVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRddayytpdddgdQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGWHSLDQSkllllvylrkillirTFSNLSPCETVPAEQNSPQATMDASVPSVPDLCSFLNAFPAA
Disordered region (IsUnstruct)
****CFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRA*****VDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSN***************************EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNV*******SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSN*******************************************LSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPL************************DGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGWHSLDQSKLLLLVYLRKILLIRTFSNLSPC**********************************
Disordered Region (DISOPRED)
***KCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK*******I**NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLP**************************QFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRR*******HGWHSLDQSKLLLLVYLRKILLIRTFSNLSPC******************PSVPDLCSFLNAFPA*
Disordered Region (DISEMBL)
MSSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLD*********DDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGWHSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQATMDASVPSVPDLCSFLNAFPAA
Disordered Region (DISPRO)
*SSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKC**********************DQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQA****HGWHSLDQSKLLLLVYLRKILLIRTFSNLSPCETV****************SVPDLCSFLNAFPA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGWHSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQATMDASVPSVPDLCSFLNAFPAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1025	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.763	0.626	0.310	9e-72
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.747	0.611	0.316	1e-68
Q9C9H7	847	Receptor-like protein 12	no	no	0.638	0.772	0.323	2e-65
Q9FL28	1173	LRR receptor-like serine/	no	no	0.707	0.618	0.300	2e-62
Q9LP24	1120	Probable leucine-rich rep	no	no	0.703	0.643	0.306	6e-60
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.665	0.572	0.318	1e-56
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.681	0.634	0.284	1e-54
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.573	0.517	0.318	4e-53
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.581	0.540	0.3	2e-51
O49318	1124	Probable leucine-rich rep	no	no	0.614	0.560	0.297	2e-51

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  272 bits (696), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 277/891 (31%), Positives = 428/891 (48%), Gaps = 108/891 (12%)

Query: 30  NNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTG--HVLGL 87
           NN +  L E K+SL+   Q    E   L  W  ++   N C W GV C N TG   V+ L
Sbjct: 24  NNDLQTLLEVKKSLVTNPQ----EDDPLRQWNSDN--INYCSWTGVTCDN-TGLFRVIAL 76

Query: 88  DLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSA 147
           +L          L G+I+P   +  +L +LDLS NN  G PIP  + +L  L  L L S 
Sbjct: 77  NLTGL------GLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSN 129

Query: 148 QFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNL-DWLSYLSSLRYLDLADCKL-----SKF 201
           Q  G IP QLG+L  ++ L +  N L   G++ + L  L +L+ L LA C+L     S+ 
Sbjct: 130 QLTGEIPSQLGSLVNIRSLRIGDNELV--GDIPETLGNLVNLQMLALASCRLTGPIPSQL 187

Query: 202 SNWVQVLS------NLRSLTNLYLGYCDLPPISTPSLLHINYS--------KSLEVIDLS 247
              V+V S       L       LG C    + T +   +N +        ++LE+++L+
Sbjct: 188 GRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLA 247

Query: 248 NNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPK 306
           NN LT  I   L  +S   + ++ L +NQL G IP +   + +L+ LDL +N L  E+P+
Sbjct: 248 NNSLTGEIPSQLGEMSQ--LQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPE 305

Query: 307 FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGF 365
              NMS L  LV + N L G L + I       + N++LE L L+  +++G IP +L   
Sbjct: 306 EFWNMSQLLDLVLANNHLSGSLPKSI------CSNNTNLEQLVLSGTQLSGEIPVELSKC 359

Query: 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
            SL+ L L NN L G+I +++ +L +L  L L  N+L G +S ++ SNL++L  L L  N
Sbjct: 360 QSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSI-SNLTNLQWLVLYHN 418

Query: 426 SLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWD 485
           +L  K   + +   +L  +FL   +     P+ + +      +D+        +P     
Sbjct: 419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR 478

Query: 486 LTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL-------------- 531
           L  +L  L+L  NE+ G LP            +D++ NQ  G IP               
Sbjct: 479 L-KELNLLHLRQNELVGGLPASLGNCHQLNI-LDLADNQLSGSIPSSFGFLKGLEQLMLY 536

Query: 532 -------LPP------NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
                  LP       N++ +NLS N+ +G+I  LC  SS+L    D++NN     +P  
Sbjct: 537 NNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYL--SFDVTNNGFEDEIPLE 594

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
                +L  L L  N   G+IP ++  +R +  L + +N+L+G +P   +   +LT +DL
Sbjct: 595 LGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDL 654

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
             N LSG IP W+G+ L  L  L L SN+F  ++P +L   + + +L L  N+++G IP+
Sbjct: 655 NNNFLSGPIPPWLGK-LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQ 713

Query: 699 CFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDL 758
              N  A+       L++  N +                   G   +    L  +  + L
Sbjct: 714 EIGNLGALNV-----LNLDKNQF------------------SGSLPQAMGKLSKLYELRL 750

Query: 759 SSNKLGGKVLEEIMDLVGL-VALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPS 817
           S N L G++  EI  L  L  AL+LS NN TG I   IG L  L+ LDLS N   G +P 
Sbjct: 751 SRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPG 810

Query: 818 SLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKC 868
           S+  ++ L  +++S+NN  GK+ K  Q  R+ A ++ GN  LCG PL ++C
Sbjct: 811 SVGDMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSPL-SRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  262 bits (669), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 280/884 (31%), Positives = 414/884 (46%), Gaps = 118/884 (13%)

Query: 41  ESLLAFKQGLI---DESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPV 97
           ++LL  K   I    E  +L  W       + C W GV C  +   ++GL+L        
Sbjct: 31  QTLLELKNSFITNPKEEDVLRDWNSGSP--SYCNWTGVTCGGR--EIIGLNLSGL----- 81

Query: 98  DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQF-AGPIPHQ 156
             L G+I+PS+ +  +L ++DLS N   G PIP  + +L    E     +   +G IP Q
Sbjct: 82  -GLTGSISPSIGRFNNLIHIDLSSNRLVG-PIPTTLSNLSSSLESLHLFSNLLSGDIPSQ 139

Query: 157 LGNLSKLQVLDLRFNNLFSSGNL-DWLSYLSSLRYLDLADCKL-----SKFSNWVQVLSN 210
           LG+L  L+ L L  N L  +G + +    L +L+ L LA C+L     S+F   VQ    
Sbjct: 140 LGSLVNLKSLKLGDNEL--NGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQ---- 193

Query: 211 LRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHI 270
              L  L L   +L     P    I    SL +   + N L  S+ P   N   NL   +
Sbjct: 194 ---LQTLILQDNEL---EGPIPAEIGNCTSLALFAAAFNRLNGSL-PAELNRLKNL-QTL 245

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELS 329
           +LG N   G IP   G + S+++L+L+ NQL+  +PK L  +++L+ L  S N L G + 
Sbjct: 246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH 305

Query: 330 E------------FIQNVSSGS------TKNSSLEWLYLAFNEITGTIP-DLGGFPSLQI 370
           E              +N  SGS      + N+SL+ L+L+  +++G IP ++    SL++
Sbjct: 306 EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKL 365

Query: 371 LSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLK 430
           L L NN LTG I  S+ QL +L  L L+ NSL G +S ++ SNL++L    L  N+L  K
Sbjct: 366 LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSI-SNLTNLQEFTLYHNNLEGK 424

Query: 431 FSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQL 490
              +     +L  ++L   +     P  + +  +   +D     +S  +P     L + L
Sbjct: 425 VPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKD-L 483

Query: 491 YYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL------------------- 531
             L+L  NE+ G +P  S         ID++ NQ  G IP                    
Sbjct: 484 TRLHLRENELVGNIP-ASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQ 542

Query: 532 --LP------PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFD 583
             LP       N++ +N S NKF+GSIS LC  SS+L    D++ N   G +P    +  
Sbjct: 543 GNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL--SFDVTENGFEGDIPLELGKST 600

Query: 584 SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL 643
           +L  L L  N F G IP +   +  +  L +  NSLSG +P       +LT +DL  N L
Sbjct: 601 NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYL 660

Query: 644 SGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF 703
           SG IPTW+G+ LP L  L L SNKF G++P ++  L++I  L L  N+++G IP+   N 
Sbjct: 661 SGVIPTWLGK-LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNL 719

Query: 704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID--LSSN 761
            A+                NL    +  PL              +I  L K+ +  LS N
Sbjct: 720 QALNA-------------LNLEENQLSGPL------------PSTIGKLSKLFELRLSRN 754

Query: 762 KLGGKVLEEIMDLVGL-VALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLS 820
            L G++  EI  L  L  AL+LS NN TG+I   I  L  L+ LDLS N   G +P  + 
Sbjct: 755 ALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIG 814

Query: 821 RLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPL 864
            ++ L  ++LSYNN  GK+ K  Q  R+ A  + GN  LCG PL
Sbjct: 815 DMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 236/730 (32%), Positives = 359/730 (49%), Gaps = 76/730 (10%)

Query: 164 QVLDLRFNNLFSSGNLDW---LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLT--NLY 218
           QV+ L   N F +  L     L  L  LR+LDL +C L  +      L NL  LT  NLY
Sbjct: 85  QVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNL--YGEIPSSLGNLSHLTLVNLY 142

Query: 219 LG-YCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQL 277
              +    P S  +L        L  + L+NN LT  I   L N+S  LV+ ++L SN+L
Sbjct: 143 FNKFVGEIPASIGNL------NQLRHLILANNVLTGEIPSSLGNLSR-LVN-LELFSNRL 194

Query: 278 HGSIPLAFGHMASLRHLDLLSNQL-REVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVS 336
            G IP + G +  LR+L L SN L  E+P  LGN+S+L  LV ++N+L GE+   I N+ 
Sbjct: 195 VGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNL- 253

Query: 337 SGSTKNSSLEWLYLAF--NEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLSKLE 393
                   +E   ++F  N ++G IP        L I  L +N  T T    +     LE
Sbjct: 254 --------IELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLE 305

Query: 394 LLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT--LKFSHDWTPPFQLFNIFLGSCKI 451
              +S NS  G   ++L   + SL+++ L +N  T  ++F+ + +   +L ++ LG  ++
Sbjct: 306 YFDVSYNSFSGPFPKSLLL-IPSLESIYLQENQFTGPIEFA-NTSSSTKLQDLILGRNRL 363

Query: 452 GPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKF 511
               P+ +        LD+S+   +  +P     L N L +L+LS N ++G++P    + 
Sbjct: 364 HGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVN-LLHLDLSKNNLEGEVPACLWRL 422

Query: 512 DSYGPGIDVSSNQFDG--PIPLLPPNVSSLNLSKNKFSGSISFL-CSISSHLLTYLDLSN 568
           ++    + +S N F            +  L+L+ N F G I ++ C +SS  L +LDLSN
Sbjct: 423 NT----MVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSS--LGFLDLSN 476

Query: 569 NLLSGRLPDCWFQFD-SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFF 627
           NL SG +P C   F  S+  LNL +N+F G +PD  S    + SL + +N L G  P   
Sbjct: 477 NLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSL 536

Query: 628 MNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKF-------HGNIPFQLCYLS 680
           +N   L L+++  N +    P+W+ ESLP+L VL+LRSNKF       H +I FQ     
Sbjct: 537 INCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQ----- 590

Query: 681 HIQILDLSLNNISGIIPKCF----HNFTAMTKEKSSNLS----IISNYYYNLGLRGMLMP 732
            ++I+D+S NN SG +P  +     + T +T+E    ++       +YY+ + +      
Sbjct: 591 SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVN---- 646

Query: 733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792
                  KG    ++ I    + ID S NK+ G + E +  L  L  LNLS N  T  I 
Sbjct: 647 -------KGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIP 699

Query: 793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGAST 852
             +  L  L+ LD+SRN   G IP  L+ L  LS M+ S+N   G +P+GTQ QR   S+
Sbjct: 700 RFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSS 759

Query: 853 YAGNPELCGL 862
           +  NP L GL
Sbjct: 760 FLDNPGLYGL 769

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 261/869 (30%), Positives = 389/869 (44%), Gaps = 144/869 (16%)

Query: 37  DEEKESLLAFKQGLI-DESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDS 95
           + E E+L +FK G+  D  G+LS W      R+C  W G+ C + TGHV+ + L      
Sbjct: 28  EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITC-DSTGHVVSVSLLEKQ-- 83

Query: 96  PVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPH 155
               L+G ++P++  L +L  LDL+ N+F+G  IP  IG L +L++L L    F+G IP 
Sbjct: 84  ----LEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYFSGSIPS 138

Query: 156 QLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLT 215
            +  L  +  LDLR NNL S                                        
Sbjct: 139 GIWELKNIFYLDLR-NNLLSG--------------------------------------- 158

Query: 216 NLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDL--- 272
                  D+P         I  + SL +I    N LT  I   L     +LV H+ +   
Sbjct: 159 -------DVPE-------EICKTSSLVLIGFDYNNLTGKIPECL----GDLV-HLQMFVA 199

Query: 273 GSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEF 331
             N L GSIP++ G +A+L  LDL  NQL  ++P+  GN+ +L+ LV + N L G++   
Sbjct: 200 AGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAE 259

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLS 390
           I N SS       L  L L  N++TG IP +LG    LQ L +  N+LT +I  S+ +L+
Sbjct: 260 IGNCSS-------LVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLT 312

Query: 391 KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCK 450
           +L  L LS N L G ISE +   L SL+ L L  N+ T +F    T    L  + +G   
Sbjct: 313 QLTHLGLSENHLVGPISEEI-GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNN 371

Query: 451 IGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRK 510
           I    P  L        L   +  ++  +P    + T  L  L+LS+N+M G++P   R 
Sbjct: 372 ISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTG-LKLLDLSHNQMTGEIP---RG 427

Query: 511 FDSYG-PGIDVSSNQFDGPIP---LLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDL 566
           F       I +  N F G IP       N+ +L+++ N  +G++  L       L  L +
Sbjct: 428 FGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIG-KLQKLRILQV 486

Query: 567 SNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSF 626
           S N L+G +P        L IL L +N F G IP  MS L  +  L +Y+N L G +P  
Sbjct: 487 SYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEE 546

Query: 627 FMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILD 686
             +   L+++DL  N  SG+IP    + L +L  LSL+ NKF+G+IP  L  LS +   D
Sbjct: 547 MFDMKLLSVLDLSNNKFSGQIPALFSK-LESLTYLSLQGNKFNGSIPASLKSLSLLNTFD 605

Query: 687 LSLNNISGIIP----------KCFHNF-----TAMTKEKSSNLSIISNYYYNLGLRGMLM 731
           +S N ++G IP          + + NF     T    ++   L ++     +  L    +
Sbjct: 606 ISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSI 665

Query: 732 P-----------LIFFDTWKGGQYEYKSILGLIKII--DLSSNKLGGKVLEEIMDLVGLV 778
           P           L F      G    +   G+  II  +LS N   G++ +   ++  LV
Sbjct: 666 PRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLV 725

Query: 779 ALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 838
           +L+LS+NNLTG+                        IP SL+ L  L  + L+ NN  G 
Sbjct: 726 SLDLSSNNLTGE------------------------IPESLANLSTLKHLKLASNNLKGH 761

Query: 839 IPKGTQLQRFGASTYAGNPELCGLPLPNK 867
           +P+    +   AS   GN +LCG   P K
Sbjct: 762 VPESGVFKNINASDLMGNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  233 bits (594), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 255/831 (30%), Positives = 377/831 (45%), Gaps = 110/831 (13%)

Query: 39  EKESLLAFKQGLIDESGILSSW---GREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDS 95
           E  +LL +K    + S  LSSW      +   +C  W GV C N  G +  L+L  +   
Sbjct: 33  EANALLKWKSTFTNSSK-LSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTNT--- 87

Query: 96  PVDALKGTINP-SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIP 154
               ++GT      + L +L Y+DLS N  SG+  P+F G+L KL    LS+    G I 
Sbjct: 88  ---GIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLSTNHLTGEIS 143

Query: 155 HQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSL 214
             LGNL  L VL L  N            YL+S+   +L                N+ S+
Sbjct: 144 PSLGNLKNLTVLYLHQN------------YLTSVIPSELG---------------NMESM 176

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274
           T+L L    L      SL ++   K+L V+ L  NYLT  I P L N+ S  +  + L  
Sbjct: 177 TDLALSQNKLTGSIPSSLGNL---KNLMVLYLYENYLTGVIPPELGNMES--MTDLALSQ 231

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQ 333
           N+L GSIP   G++ +L  L L  N L  V P  +GNM S+  L  S N+L G +     
Sbjct: 232 NKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPS--- 288

Query: 334 NVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLSKL 392
             S G+ KN  L  L L  N +TG IP  LG   S+  L L NN+LTG+I  S+G L  L
Sbjct: 289 --SLGNLKN--LTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNL 344

Query: 393 ELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIG 452
            +L L  N L GVI   L  N+ S+  LQL++N LT      +     L  ++L    + 
Sbjct: 345 TILYLYENYLTGVIPPEL-GNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLT 403

Query: 453 PRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFD 512
              P+ L +    + LD+S   ++  VPD F + T +L  L L  N + G +P       
Sbjct: 404 GVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFT-KLESLYLRVNHLSGAIPP-GVANS 461

Query: 513 SYGPGIDVSSNQFDGPIP---LLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNN 569
           S+   + + +N F G  P        + +++L  N   G I         L+    L N 
Sbjct: 462 SHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNK 521

Query: 570 LLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMN 629
             +G + + +  +  L  ++ ++N F GEI  +      +G+L + NN+++G +P+   N
Sbjct: 522 F-TGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWN 580

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSL 689
            +QL  +DL  N L GE+P  IG +L NL  L L  N+  G +P  L +L++++ LDLS 
Sbjct: 581 MTQLVELDLSTNNLFGELPEAIG-NLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSS 639

Query: 690 NNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSI 749
           NN S  IP+ F +F                    L L  M                    
Sbjct: 640 NNFSSEIPQTFDSF--------------------LKLHDM-------------------- 659

Query: 750 LGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN 809
                  +LS NK  G +   +  L  L  L+LS+N L G+I  ++  L+SLD LDLS N
Sbjct: 660 -------NLSRNKFDGSI-PRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHN 711

Query: 810 HFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC 860
           +  G IP++   +  L+ +D+S N   G +P     ++  A     N  LC
Sbjct: 712 NLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  222 bits (566), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 253/795 (31%), Positives = 364/795 (45%), Gaps = 113/795 (14%)

Query: 129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNL-DWLSYLSS 187
           IP+ I SL  L EL L+  QF+G IP ++ NL  LQ LDL  N+L  +G L   LS L  
Sbjct: 81  IPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSL--TGLLPRLLSELPQ 138

Query: 188 LRYLDLADCKLS-----KFSNWVQVLSNLRSLTNLYLGYCDLPP----ISTPSLLHINYS 238
           L YLDL+D   S      F   +  LS+L    N   G  ++PP    +S  S L++  +
Sbjct: 139 LLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSG--EIPPEIGKLSNLSNLYMGLN 196

Query: 239 K-------SLEVIDLSNNYLTNSIY---PWLFNVSS-NLVDHIDLGSNQLHGSIPLAFGH 287
                    +  I L  N+   S +   P    +S    +  +DL  N L  SIP +FG 
Sbjct: 197 SFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGE 256

Query: 288 MASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRG----ELSEFI-------QNV 335
           + +L  L+L+S +L   +P  LGN  SLK L+ S+N L G    ELSE         +N 
Sbjct: 257 LHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQ 316

Query: 336 SSGSTKNSSLEW-----LYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQL 389
            SGS  +   +W     L LA N  +G IP ++   P L+ LSL +N L+G+I + +   
Sbjct: 317 LSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGS 376

Query: 390 SKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHD-WTPPFQLFNIFLGS 448
             LE + LSGN L G I E +F   SSL  L L++N +      D W  P          
Sbjct: 377 GSLEAIDLSGNLLSGTIEE-VFDGCSSLGELLLTNNQINGSIPEDLWKLPL--------- 426

Query: 449 CKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLS 508
                            +ALD+ +   +  +P   W  TN L     S N ++G LP   
Sbjct: 427 -----------------MALDLDSNNFTGEIPKSLWKSTN-LMEFTASYNRLEGYLPAEI 468

Query: 509 RKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
               S    + +S NQ  G IP                   I  L S+S      L+L+ 
Sbjct: 469 GNAASL-KRLVLSDNQLTGEIPR-----------------EIGKLTSLS-----VLNLNA 505

Query: 569 NLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPS--- 625
           N+  G++P       SL  L+L +N+  G+IPD ++ L  +  L L  N+LSG +PS   
Sbjct: 506 NMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPS 565

Query: 626 -FFMNGSQLTL--------MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL 676
            +F       L         DL  N LSG IP  +GE L  LV +SL +N   G IP  L
Sbjct: 566 AYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLV-LVEISLSNNHLSGEIPASL 624

Query: 677 CYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFF 736
             L+++ ILDLS N ++G IPK   N   +     +N  +  +   + GL G L+ L   
Sbjct: 625 SRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLT 684

Query: 737 DTWKGGQYEYKSILGLIKII---DLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP 793
                G     + LG +K +   DLS N L G++  E+  +  LV L +  N  TG+I  
Sbjct: 685 KNKLDGPV--PASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPS 742

Query: 794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTY 853
            +G L  L++LD+S N   G IP+ +  L  L  ++L+ NN  G++P     Q    +  
Sbjct: 743 ELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALL 802

Query: 854 AGNPELCGLPLPNKC 868
           +GN ELCG  + + C
Sbjct: 803 SGNKELCGRVVGSDC 817

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  216 bits (549), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 213/750 (28%), Positives = 357/750 (47%), Gaps = 51/750 (6%)

Query: 184 YLSSLRYLDLADCKLSKFSNWVQV-LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLE 242
           YL+S   LD   C      NW  +  ++LR++T++ L   +L    +P +  ++    L 
Sbjct: 44  YLASWNQLDSNPC------NWTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLH---GLR 94

Query: 243 VIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQL- 301
            +++S N+++  I P   ++  +L + +DL +N+ HG IP+    + +L+ L L  N L 
Sbjct: 95  KLNVSTNFISGPI-PQDLSLCRSL-EVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLF 152

Query: 302 REVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP- 360
             +P+ +GN+SSL+ LV   N L G        +     K   L  +    N  +G IP 
Sbjct: 153 GSIPRQIGNLSSLQELVIYSNNLTGV-------IPPSMAKLRQLRIIRAGRNGFSGVIPS 205

Query: 361 DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTL 420
           ++ G  SL++L L  N L G++ K + +L  L  L+L  N L G I  ++  N+S L+ L
Sbjct: 206 EISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSV-GNISRLEVL 264

Query: 421 QLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP 480
            L +N  T     +     ++  ++L + ++    P+ + +      +D S   ++  +P
Sbjct: 265 ALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIP 324

Query: 481 DWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYG--PGIDVSSNQFDGPIPL---LPPN 535
             F  + N L  L+L  N + G +P   R+         +D+S N+ +G IP      P 
Sbjct: 325 KEFGHILN-LKLLHLFENILLGPIP---RELGELTLLEKLDLSINRLNGTIPQELQFLPY 380

Query: 536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSF 595
           +  L L  N+  G I  L    S+  + LD+S N LSG +P  + +F +L +L+L +N  
Sbjct: 381 LVDLQLFDNQLEGKIPPLIGFYSNF-SVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKL 439

Query: 596 FGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL 655
            G IP  +   +S+  L L +N L+G LP    N   LT ++L +N LSG I   +G+ L
Sbjct: 440 SGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGK-L 498

Query: 656 PNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS 715
            NL  L L +N F G IP ++  L+ I   ++S N ++G IPK   +   + +   S   
Sbjct: 499 KNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNK 558

Query: 716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE----- 770
                   LG    L  L   D    G+  + S   L ++++L   +LGG +L E     
Sbjct: 559 FSGYIAQELGQLVYLEILRLSDNRLTGEIPH-SFGDLTRLMEL---QLGGNLLSENIPVE 614

Query: 771 IMDLVGL-VALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829
           +  L  L ++LN+S+NNL+G I   +G L+ L+ L L+ N   G IP+S+  L  L + +
Sbjct: 615 LGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICN 674

Query: 830 LSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDD 889
           +S NN  G +P     QR  +S +AGN  LC              P     D+      +
Sbjct: 675 ISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC------NSQRSHCQPLVPHSDSKLNWLIN 728

Query: 890 GDQFITLGFYMSMILG--FFVGFWGVCGTL 917
           G Q   +     +++G  F + F G+C T+
Sbjct: 729 GSQRQKILTITCIVIGSVFLITFLGLCWTI 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  210 bits (535), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 213/669 (31%), Positives = 324/669 (48%), Gaps = 81/669 (12%)

Query: 237 YSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDL 296
           Y   L  + L  N L+  + P + N++S  ++  ++  N+L G IP+  G  +SL+ LD+
Sbjct: 114 YCTRLLSVFLQYNSLSGKLPPAMRNLTS--LEVFNVAGNRLSGEIPV--GLPSSLQFLDI 169

Query: 297 LSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEI 355
            SN    ++P  L N++ L+ L  SYN+L GE+   + N+ S       L++L+L FN +
Sbjct: 170 SSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQS-------LQYLWLDFNLL 222

Query: 356 TGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
            GT+P  +    SL  LS   N + G I  + G L KLE+L LS N+  G +  +LF N 
Sbjct: 223 QGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN- 281

Query: 415 SSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG-------SCKIGPRFPKWLQSQNQTVA 467
           +SL  +QL  N+ +     D   P    N   G         +I  RFP WL +      
Sbjct: 282 TSLTIVQLGFNAFS-----DIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKN 336

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
           LDVS    S  +P    +L  +L  L L+NN + G++P   ++  S    +D   N   G
Sbjct: 337 LDVSGNLFSGEIPPDIGNL-KRLEELKLANNSLTGEIPVEIKQCGSLDV-LDFEGNSLKG 394

Query: 528 PIPLLPPNVSSL---NLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDS 584
            IP     + +L   +L +N FSG +     ++   L  L+L  N L+G  P       S
Sbjct: 395 QIPEFLGYMKALKVLSLGRNSFSGYVPS-SMVNLQQLERLNLGENNLNGSFPVELMALTS 453

Query: 585 LAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS 644
           L+ L+L+ N F G +P S+S L ++  L+L  N  SG +P+   N  +LT +DL K  +S
Sbjct: 454 LSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMS 513

Query: 645 GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFT 704
           GE+P  +   LPN+ V++L+ N F G +P     L  ++ ++LS N+ SG IP+ F  F 
Sbjct: 514 GEVPVEL-SGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTF-GFL 571

Query: 705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG 764
            +    S + + IS         G + P I                  +++++L SN+L 
Sbjct: 572 RLLVSLSLSDNHIS---------GSIPPEI-------------GNCSALEVLELRSNRLM 609

Query: 765 GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL 824
           G +  ++  L  L  L+L  NNL+G+I P I Q  SL+ L L  NH  G IP S S L  
Sbjct: 610 GHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSN 669

Query: 825 LSVMDLSYNNFSGKIP--------------------KGTQLQRFGA-----STYAGNPEL 859
           L+ MDLS NN +G+IP                    KG      G+     S ++GN EL
Sbjct: 670 LTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTEL 729

Query: 860 CGLPLPNKC 868
           CG PL  +C
Sbjct: 730 CGKPLNRRC 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 201/670 (30%), Positives = 311/670 (46%), Gaps = 74/670 (11%)

Query: 241 LEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQ 300
           L+ +DLS N L+  I   + N SS  ++ + L +NQ  G IP+  G + SL +L + +N+
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGNCSS--LEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNR 156

Query: 301 LR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI 359
           +   +P  +GN+ SL +LV   N + G+L   I N+         L       N I+G++
Sbjct: 157 ISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKR-------LTSFRAGQNMISGSL 209

Query: 360 P-DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLD 418
           P ++GG  SL +L L  N+L+G + K IG L KL  ++L  N   G I   + SN +SL+
Sbjct: 210 PSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREI-SNCTSLE 268

Query: 419 TLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI 478
           TL L  N L      +      L  ++L    +    P+ + + +  + +D S   ++  
Sbjct: 269 TLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGE 328

Query: 479 VPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL------- 531
           +P    ++   L  L L  N++ G +P       +    +D+S N   GPIPL       
Sbjct: 329 IPLELGNIEG-LELLYLFENQLTGTIPVELSTLKNLSK-LDLSINALTGPIPLGFQYLRG 386

Query: 532 --------------LPPNVS------SLNLSKNKFSGSI-SFLCSISSHLLTYLDLSNNL 570
                         +PP +        L++S N  SG I S+LC  S+ ++  L+L  N 
Sbjct: 387 LFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMII--LNLGTNN 444

Query: 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
           LSG +P       +L  L LA N+  G  P ++    ++ ++ L  N   G +P    N 
Sbjct: 445 LSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNC 504

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
           S L  + L  NG +GE+P  IG  L  L  L++ SNK  G +P ++     +Q LD+  N
Sbjct: 505 SALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCN 563

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
           N SG +P    +   +   K SN ++       LG    L  L                 
Sbjct: 564 NFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTEL----------------- 606

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGL-VALNLSNNNLTGQITPRIGQLKSLDFLDLSRN 809
                  +  N   G +  E+  L GL +ALNLS N LTG+I P +  L  L+FL L+ N
Sbjct: 607 ------QMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNN 660

Query: 810 HFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCL 869
           +  G IPSS + L  L   + SYN+ +G IP    L+    S++ GN  LCG PL N+C+
Sbjct: 661 NLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPL-NQCI 716

Query: 870 DEES-APSPS 878
             +  APS S
Sbjct: 717 QTQPFAPSQS 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 195/656 (29%), Positives = 325/656 (49%), Gaps = 26/656 (3%)

Query: 214 LTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLG 273
           +T+L L   +L  I +PS   I    +L  ++L+ N LT  I   + N S   ++ + L 
Sbjct: 87  VTSLDLSSMNLSGIVSPS---IGGLVNLVYLNLAYNALTGDIPREIGNCSK--LEVMFLN 141

Query: 274 SNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFI 332
           +NQ  GSIP+    ++ LR  ++ +N+L   +P+ +G++ +L+ LV   N L G L   +
Sbjct: 142 NNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSL 201

Query: 333 QNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLSK 391
            N++  +T  +         N+ +G IP ++G   +L++L L  N ++G + K IG L K
Sbjct: 202 GNLNKLTTFRA-------GQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVK 254

Query: 392 LELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI 451
           L+ ++L  N   G I + +  NL+SL+TL L  NSL      +      L  ++L   ++
Sbjct: 255 LQEVILWQNKFSGFIPKDI-GNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQL 313

Query: 452 GPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKF 511
               PK L   ++ + +D S   +S  +P     ++ +L  L L  N++ G +P+   K 
Sbjct: 314 NGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKIS-ELRLLYLFQNKLTGIIPNELSKL 372

Query: 512 DSYGPGIDVSSNQFDGPIPLLPPNVSS---LNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
            +    +D+S N   GPIP    N++S   L L  N  SG I     + S L   +D S 
Sbjct: 373 RNLAK-LDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWV-VDFSE 430

Query: 569 NLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFM 628
           N LSG++P    Q  +L +LNL +N  FG IP  +   +S+  L +  N L+G  P+   
Sbjct: 431 NQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELC 490

Query: 629 NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLS 688
               L+ ++L +N  SG +P  IG +   L  L L +N+F  N+P ++  LS++   ++S
Sbjct: 491 KLVNLSAIELDQNRFSGPLPPEIG-TCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVS 549

Query: 689 LNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKS 748
            N+++G IP    N   + +   S  S I +    LG    L  L   +    G   + +
Sbjct: 550 SNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPF-T 608

Query: 749 ILGLIKIIDLS--SNKLGGKVLEEIMDLVGL-VALNLSNNNLTGQITPRIGQLKSLDFLD 805
           I  L  + +L    N   G +  ++  L  L +A+NLS N+ +G+I P IG L  L +L 
Sbjct: 609 IGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLS 668

Query: 806 LSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCG 861
           L+ NH  G IP++   L  L   + SYNN +G++P     Q    +++ GN  LCG
Sbjct: 669 LNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1025
225464712	1021	PREDICTED: receptor-like protein 12-like	0.874	0.877	0.507	0.0
359490572	975	PREDICTED: probable LRR receptor-like se	0.869	0.913	0.499	0.0
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.890	0.891	0.485	0.0
224105895	963	predicted protein [Populus trichocarpa]	0.897	0.955	0.492	0.0
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.88	0.927	0.462	0.0
147807651	971	hypothetical protein VITISV_018647 [Viti	0.884	0.934	0.460	0.0
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.861	0.594	0.471	0.0
359490560	1010	PREDICTED: LRR receptor-like serine/thre	0.875	0.888	0.457	0.0
224116866	994	predicted protein [Populus trichocarpa]	0.868	0.895	0.454	0.0
224115848	884	predicted protein [Populus trichocarpa]	0.855	0.992	0.449	0.0

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/979 (50%), Positives = 644/979 (65%), Gaps = 83/979 (8%)

Query: 35   CLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSD 94
            C+++E+++LL FKQGL+D+ GILSSWG E+++R+CCKWRGV+CSN+T HV+ LDL A   
Sbjct: 52   CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111

Query: 95   SPV---DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG 151
              V    +L+G I+ SLL+LQHL +LDLS N+F GS +PEFIG   KL  L LS A+ AG
Sbjct: 112  DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171

Query: 152  PIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNL 211
             IP  LGNLS L  LDL  N   SS  L+WLS LSSLR+LDL+   L K   W  V++ L
Sbjct: 172  MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231

Query: 212  RSLTNLYLGYCDLPPISTPSLL-HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD-- 268
             SLT+L L    LP I TPS L + N SKSL V+DLS N+L++S+YPWLFN+SS+LV   
Sbjct: 232  PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSSLVHLD 291

Query: 269  --------------------------------------------HIDLGSNQLHGSIPLA 284
                                                        H+DL  N LHGSIP  
Sbjct: 292  LSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLHGSIPDT 351

Query: 285  FGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNS 343
            FGHM SL +LDL  NQL   +PK   N+ SL+ ++   N L  +L EF+QN  S S    
Sbjct: 352  FGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFVQN--SLSCSKD 409

Query: 344  SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
            +LE L L++N+ TG+ P+  GF  L  L +++NRL GT  + IGQLS+LE+L +SGNSL 
Sbjct: 410  TLEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEVLEISGNSLH 469

Query: 404  GVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQN 463
            G I+EA  S+LS L  L LS NSL L+ S +WTPPFQ+  + L SCK+GP FP WLQ+Q 
Sbjct: 470  GNITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCKMGPNFPGWLQTQK 529

Query: 464  QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSN 523
               +LD+SN+ ISD++P WFW+LT++L  L ++NN+++G++P L  +  +    ID+S N
Sbjct: 530  DLFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRVPSLRMETAAV---IDLSLN 586

Query: 524  QFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF- 582
            +F+GPIP LP  V  L+LSKN FSGSIS LC+I    L+YLDLS+NLLSG LPDCW Q+ 
Sbjct: 587  RFEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLDLSDNLLSGALPDCWQQWR 646

Query: 583  DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642
            D L ILNLANN+F G++P S+  L ++ +L LYNN   G LPS  MN ++L L+D+GKN 
Sbjct: 647  DQLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNGFLGELPSSLMNCTKLRLVDMGKNR 706

Query: 643  LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702
             SGEIPTWIGE L +LVVLSLRSN+FHG+I   +C L  +QILD S NNISG IP+C +N
Sbjct: 707  FSGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQILDFSRNNISGTIPRCLNN 766

Query: 703  FTAMTKEKSSNLSIISNYYYNLGL--RGM----LMPLIF-----FDT-----------WK 740
            FTAM ++     S+I++ Y  L +  RG     + P        FDT           WK
Sbjct: 767  FTAMAQKMI--YSVIAHDYLALSIVPRGRNNLGITPRWAYSSGSFDTIARYVDSALIPWK 824

Query: 741  GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800
            GG++EYK+ILGL++ IDLSSNKL G++ +EI  L+ L++LNLS N+L GQI   IGQLKS
Sbjct: 825  GGEFEYKNILGLVRSIDLSSNKLSGEIPKEITKLMELISLNLSRNHLNGQIPSMIGQLKS 884

Query: 801  LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC 860
            LD LDLS+N   G IPSSLS++  LSV+DLS NN SG+IP GTQLQ F AS+Y GNPELC
Sbjct: 885  LDVLDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQIPSGTQLQGFEASSYMGNPELC 944

Query: 861  GLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVK 920
            G PL  KC ++E+A +    D     DD  D      FY+S+ LGF VGFWGV GTL++K
Sbjct: 945  GSPLKTKCQEDETAQTSPTSDG--NEDDLQDDEFDPWFYVSIALGFLVGFWGVWGTLVLK 1002

Query: 921  SSWRHGYYNFLTRVKDWLY 939
            SSW   Y+ FL ++KDW +
Sbjct: 1003 SSWSEAYFRFLNKIKDWFF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/953 (49%), Positives = 624/953 (65%), Gaps = 62/953 (6%)

Query: 33  ISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRAS 92
           + C++ E+++LL FK+ + D+ GILSSW  E  KR+CCKWRGV+CS++TGH+  LDL A 
Sbjct: 34  VGCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAY 93

Query: 93  S-DSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG 151
                   L+G I+PSLL+LQ L +LDLS N+F G  +PEFIGSL K+  L LSS   AG
Sbjct: 94  EYKDEFRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLSSTYLAG 153

Query: 152 PIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNL 211
           P+PHQLGNLS L  LDL  N+  SS NLDWLS LSSL +L L    LSK   W   ++ L
Sbjct: 154 PLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADAINKL 213

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
            SL +L L  CDLP   TPSL  +  S SL V+DLS N L+ SIYPWLFN +S+LV H+D
Sbjct: 214 PSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNSSLV-HLD 272

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPK-------FL--------------- 308
           L  N L  S P AFG+M SL +LDL  NQL+ E+PK       FL               
Sbjct: 273 LSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLDLSNNQLQGSIPDTF 332

Query: 309 GNMSSLKRLVFSYNELRGELSEFIQNVS------------SG-------STKNSSLEWLY 349
           GNM+SL+ +  + N+L GE+ +   N+             +G       +  N +LE L 
Sbjct: 333 GNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVKNLLACANDTLEILD 392

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEA 409
           L+ N+  G++PDL GF SL  L L +N+L GT+ +SI QL++LELL +  NSL+G +SEA
Sbjct: 393 LSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNSLQGTVSEA 452

Query: 410 LFSNLSSLDTLQLSDNSL-TLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVAL 468
              +LS L  L LS NSL TL  S DW P FQL +IFL SCK+GPRFP WL++Q     L
Sbjct: 453 HLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLRTQKGVGWL 512

Query: 469 DVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGP 528
           D+S +GISD++P+WFW+ T+ L  LN+SNN++ G +P+ S +F  + P +D+SSN F+G 
Sbjct: 513 DISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRF-PQMDMSSNYFEGS 571

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAIL 588
           IP+       L+LSKN FSGSIS LC++S     YLDLSNNLLSG LP+CW Q++ L +L
Sbjct: 572 IPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGLVVL 631

Query: 589 NLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
           NL NN+F G+I DS+  L +I SL L NN L+G LP    N ++L ++DLG+N L G IP
Sbjct: 632 NLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCGNIP 691

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
           +WIG SLPNLVVL+LR N+F+G+IP  +C L  IQILDLS NNISG+IP+CF+NFTAM +
Sbjct: 692 SWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTAMVQ 751

Query: 709 EKSSNLSIISNYYYNL-GLRGMLMPLIFFDT----WKGGQYEYKSILGLIKIIDLSSNKL 763
           +     S++  Y Y +   + +  P  + D     WKG + EY+  LGL+K IDLSSN+L
Sbjct: 752 QG----SLVITYNYTIPCFKPLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSNEL 807

Query: 764 GGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR 823
            G++  E+ +L+ L++LNLS N LTG I P IGQLK++D LDLS N  FG IPS+LS++ 
Sbjct: 808 SGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDALDLSWNRLFGKIPSNLSQID 867

Query: 824 LLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCL-DEESAPSPSRDDA 882
            LSV+DLS+N+F GKIP GTQLQ F +STY GNP+LCG PL  KCL DE    SP  +  
Sbjct: 868 RLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPLLKKCLEDERGEHSPPNEGH 927

Query: 883 YYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVK 935
                +D      L FY+ + LGF VGFWG+CGTLL+ SSWR+  +  L + K
Sbjct: 928 VQKEAND------LWFYIGVALGFIVGFWGICGTLLLNSSWRNANFISLKKPK 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1009 (48%), Positives = 659/1009 (65%), Gaps = 96/1009 (9%)

Query: 32   IISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRA 91
            +  C++ E+++LL F++GL+D  G+LSSWG  D+ R+CC+WRGV+CSN++GH++ L L A
Sbjct: 27   VTGCIERERQALLHFRRGLVDRYGLLSSWG--DDNRDCCQWRGVQCSNQSGHIIMLHLPA 84

Query: 92   ------SSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALS 145
                  S D    +L+G I+PSLL+L HLT+LDLS+N+F G  IP F+GSL ++  L LS
Sbjct: 85   PPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSLSRMQYLNLS 144

Query: 146  SAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWV 205
             A FA  +P QLGNLS L  LDL  N L +SGNL+WLS LSSLR+LDL+   LS+  +W 
Sbjct: 145  HANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSVNLSEAIHWS 204

Query: 206  QVLSNLRSLTNLYLGYC---DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNV 262
            Q ++ L SL +L L +C    +PP++ PSL H N S  L  +DLS NYLT+SIYPWL N 
Sbjct: 205  QAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYLTSSIYPWLLNF 264

Query: 263  SSNLVDHIDLGSNQLHGSIP-LAFGHMASLRHLDLLSNQLRE------------------ 303
            S+ L+ H+DL  N L+GSIP  AFG+M+SL +LDL S++L +                  
Sbjct: 265  STTLL-HLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIGDMGSLAYLDIS 323

Query: 304  -------------------------------VPKFLGNMSSLKRLVFSYNELRGELSEFI 332
                                           +P  +GNM SLK+L  S N L+GE+ + +
Sbjct: 324  ENQLWGSIPDTVGKMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKLSLSENHLQGEIPKSL 383

Query: 333  QNVS------------SG-------STKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSL 373
             N+             SG       +  N +LE L+L+ N+ +G++P L GF SL+ L L
Sbjct: 384  SNLCNLQELELDRNNLSGQLAPDFVACANDTLETLFLSDNQFSGSVPALIGFSSLRELHL 443

Query: 374  ENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSH 433
            + N+L GT+ +S+GQL+ L+ L ++ NSL+G ISEA   NLS L  L LS NSLT   S 
Sbjct: 444  DFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEAHLFNLSWLSYLNLSSNSLTFNMSL 503

Query: 434  DWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYL 493
            DW PPFQL ++ L SCK+GPRFP WL++QNQ   LD+SN+ ISD++PDWFW++T+ +  L
Sbjct: 504  DWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELDISNSEISDVLPDWFWNVTSTVNTL 563

Query: 494  NLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFL 553
            ++SNN +KG LP+LS +F S+   ID+SSN F+G IP LP +V  L+LS NK SGSIS L
Sbjct: 564  SISNNRIKGTLPNLSSEFGSFS-NIDMSSNCFEGSIPQLPYDVQWLDLSNNKLSGSISLL 622

Query: 554  CSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLS 613
            C++ + LL     +N+L  G LP+CW Q++SL +LNL NN F G+IP S   LRSI +L 
Sbjct: 623  CTVGTELLLLDLSNNSLSGG-LPNCWAQWESLVVLNLENNRFSGQIPISFGSLRSIQTLH 681

Query: 614  LYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673
            L NN+L+G LP  F N + L  +DL KN LSG+IP WIG SLPNL VL+L SN+F G I 
Sbjct: 682  LRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPEWIGGSLPNLTVLNLGSNRFSGGIC 741

Query: 674  FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY-YYNLGLRGMLMP 732
             +LC L +IQILDLS NN+ G++P+C   FTAMTK+ S  L I+ NY + +   +  L+ 
Sbjct: 742  PELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMTKKGS--LVIVHNYSFADFSSKYSLIR 799

Query: 733  LIFF-----DTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNL 787
              F+       WKG ++EYKS LGL+K ID SSNKL G++ EE++DLV LV+LNLS NNL
Sbjct: 800  NAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLSGEIPEEVIDLVELVSLNLSRNNL 859

Query: 788  TGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQR 847
            T  I  RIGQLKSL+ LDLS+N  FG IP+SL  +  LSV+DLS NN SGKIP+GTQLQ 
Sbjct: 860  TRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSDNNLSGKIPQGTQLQS 919

Query: 848  FGASTYAGNPELCGLPLPNKCLDEE-SAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGF 906
            F   +Y GNP LCGLPL  KC +++    SP+ +       D  D +    FY+S+ LGF
Sbjct: 920  FNIDSYKGNPALCGLPLLKKCFEDKIKQDSPTHNIEDKIQQDGNDMW----FYVSVALGF 975

Query: 907  FVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQA 955
             VGFWGVCGTLL+ +SWR+ Y+ FL ++KDWLYV   +N+A+LQR +Q+
Sbjct: 976  IVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAINMARLQRSLQS 1024

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/936 (49%), Positives = 608/936 (64%), Gaps = 16/936 (1%)

Query: 33  ISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRAS 92
           I C++ E+++LL FK+ +IDE G+LSSWG E+EKR+CCKWRGV C N TGHV  L+L +S
Sbjct: 30  IGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSS 89

Query: 93  S--DSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFA 150
              +     L G ++ SLL+LQHL YLDLS NN   S I +FIGSL  L  L LS   F 
Sbjct: 90  PLYEHHFTPLTGKVSNSLLELQHLNYLDLSLNNLDES-IMDFIGSLSSLRYLNLSYNLFT 148

Query: 151 GPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSN 210
             IP+ L NLS+LQ LDL ++   S  NL WLS+LSSL +LDL+   LSK ++W+QV++N
Sbjct: 149 VTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVTN 208

Query: 211 LRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHI 270
           L  L +L L  C L  I    L  +N SK L V+ LSNN L+++IYPWL+N+S++L D +
Sbjct: 209 LPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLAD-L 267

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELS 329
           DL  NQL G +P  F  M++L +L L  NQL   +P+ LG M SL  L   +N L GELS
Sbjct: 268 DLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLCHNNLTGELS 327

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQL 389
           +  +N+  G T+ SSLE L L  N++ G++ D+  F SL+ L + NN+L G+I +SIG L
Sbjct: 328 DLTRNLY-GRTE-SSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQLNGSIPESIGFL 385

Query: 390 SKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
           SKL+   +S NSL+G++S   FSNLS L  L LS NSL L+F  DW P FQL NI L SC
Sbjct: 386 SKLDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSC 445

Query: 450 KIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSR 509
            +GP FPKWL++Q +   LD+S+A ISD VP+WFW+L  +L +LN+S+N M+G LPD S 
Sbjct: 446 HLGPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSS 505

Query: 510 --KFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLS 567
               D   PG D+S N+F+G +P  P N +SL LS N FSG IS +C+I    L++LDLS
Sbjct: 506 VDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLS 565

Query: 568 NNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFF 627
           NNLL+G+LP+C+  + +L +LNLANN+  GEIP S+  L S+ +LSL  NSL G LP   
Sbjct: 566 NNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSL 625

Query: 628 MNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDL 687
            N S L  +DL +N LSGEIP WIGESL +L+ LSL+SN+F G+IP  LC L++++ILDL
Sbjct: 626 KNCSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDL 685

Query: 688 SLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDT-----WKGG 742
           S N ISG IPKC +N T M  +  +  +II N Y      G +    ++       WKG 
Sbjct: 686 SQNTISGAIPKCLNNLTTMVLKGEAE-TIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGR 744

Query: 743 QYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLD 802
            YEY+  LGL+++ID + N L G++ EEI  L+GLVALNLS NNLTG I   IG LKSL+
Sbjct: 745 DYEYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLLKSLE 804

Query: 803 FLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGL 862
            LDLS N F G IP ++  L  LS +++SYNN SG+IP  TQLQ F AS + GNP LCGL
Sbjct: 805 SLDLSGNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGL 864

Query: 863 PLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSS 922
           P+ NKCL  +   +   +       +   +F +  F  +M +GF V FWGV G LL+  S
Sbjct: 865 PVTNKCLGGDLPRNLVMNGVIQDNQETVHEF-SAWFCTAMGIGFSVFFWGVSGALLLIRS 923

Query: 923 WRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPE 958
           WRH Y+ FL    DWLYV+  V  A+LQR  Q   E
Sbjct: 924 WRHAYFRFLDESWDWLYVKVAVRKARLQREFQRLHE 959

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/993 (46%), Positives = 618/993 (62%), Gaps = 91/993 (9%)

Query: 16  SVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGV 75
           ++  F+   RV ++   + C + E+++LL FKQG++D+ G+LSSWG  ++KR+CCKWRGV
Sbjct: 18  TLACFEACLRVGDAK--VGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGV 75

Query: 76  RCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGS 135
           +C+N+TGHV+ LDL A S      L G I PSL +LQHL +L+LS N+F   P       
Sbjct: 76  KCNNQTGHVIRLDLHAQS------LGGKIGPSLAELQHLKHLNLSSNDFEAFP------- 122

Query: 136 LGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFN-NLFSSGNLDWLSYLSSLRYLDLA 194
                        F G +P QLGNLS LQ LDL +N    + GNLDWL +L  L +LDL+
Sbjct: 123 ------------NFTGILPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLS 170

Query: 195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPI-STPSLLHINYSKSLEVIDLSNNYLTN 253
              LSK  +W Q ++ + SLT LYL    LP I  T S+ HIN S SL V+ L +N LT+
Sbjct: 171 WVNLSKAIHWPQAINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTS 230

Query: 254 SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMS 312
           SIYPWLFN SS+LV H+DL  N L+GS P AFG+M +L +LDL SN+LR  +P   GNM+
Sbjct: 231 SIYPWLFNFSSSLV-HLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMT 289

Query: 313 SLKRLVFSYNELRGELSEFIQNVSSGS--------------------------------- 339
           +L  L  S+N+LRG + +   N++S +                                 
Sbjct: 290 TLAYLDLSWNKLRGSIPDAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNL 349

Query: 340 ----------TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQL 389
                       N++LE L L++N++ G+ P+L GF  L+ L L+ N+L GT+ +SIGQL
Sbjct: 350 TGLKEKDYLACPNNTLEVLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHESIGQL 409

Query: 390 SKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
           ++L+LL +  NSLRG +S      LS+L  L LS NSLT   S +  P F+  +I L SC
Sbjct: 410 AQLQLLSIPSNSLRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLASC 469

Query: 450 KIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSR 509
           K+GPRFP WLQ+Q     LD+S +GISD++P+WFW+LT+ L +LN+SNN + G LP+L  
Sbjct: 470 KLGPRFPNWLQTQEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNLQA 529

Query: 510 KFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL---LTYLDL 566
           +  SY  G+D+SSN  +G IP    N   L+LSKN FSGSIS  C   +     L++LDL
Sbjct: 530 R--SY-LGMDMSSNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDL 586

Query: 567 SNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSF 626
           SNN LSG LP+CW Q+  L +L+LANN+F G+I +S+  L  + +L L NNS +G LPS 
Sbjct: 587 SNNRLSGELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTGALPSS 646

Query: 627 FMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILD 686
             N   L L+DLGKN LSG+I  W+G SL +L+VL+LRSN+F+G+IP  LC L  IQ+LD
Sbjct: 647 LKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLD 706

Query: 687 LSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDT----WKGG 742
           LS NN+SG IPKC  N TAM ++ S  LS  +   YNL +     P  + D+    WKG 
Sbjct: 707 LSSNNLSGKIPKCLKNLTAMAQKGSPVLSYET--IYNLSI-----PYHYVDSTLVQWKGK 759

Query: 743 QYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLD 802
           + EYK  L  IK ID S N+L G++  E+ DLV LV+LNLS NNL G I   IGQLK LD
Sbjct: 760 EQEYKKTLRFIKSIDFSRNQLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQLKLLD 819

Query: 803 FLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGL 862
            LDLS+N   G IP +LS++  LSV+DLS N  SGKIP GTQLQ F ASTY GNP LCG 
Sbjct: 820 VLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEGNPGLCGP 879

Query: 863 PLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSS 922
           PL  +C ++E              +D  D    + FY +++LGF +GFWGVCGTLL  SS
Sbjct: 880 PLLIRCPEDELGGVSFTSGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLFNSS 939

Query: 923 WRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQA 955
           WR+ Y+  L+++KDWLY+  +VN+ +++R +Q 
Sbjct: 940 WRYAYFQLLSKIKDWLYMTTIVNMNRIRRSLQG 972

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1001 (46%), Positives = 614/1001 (61%), Gaps = 94/1001 (9%)

Query: 11  YVSLISVIL-FQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNC 69
           ++SL  ++L F+   RV ++   + C++ E+++LL FKQG++D+ G+LSSWG  ++KR+C
Sbjct: 9   FISLFLLLLCFEACLRVGDAK--VGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDC 66

Query: 70  CKWRGVRCSNKTGHVLGLDLRASSDSPV---DALKGTINPSLLKLQHLTYLDLSWNNFSG 126
           CKWRGV C+N+TGHV+ LDL       +    +L G I PSL +LQHL +L+LSWN    
Sbjct: 67  CKWRGVECNNQTGHVIMLDLHTPPPVGIGYFQSLGGKIGPSLAELQHLKHLNLSWN---- 122

Query: 127 SPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFN-NLFSSGNLDWLSYL 185
                                QF G +P QLGNLS LQ LDL  N    S GNLDWLS L
Sbjct: 123 ---------------------QFEGILPTQLGNLSNLQSLDLGHNYGDMSCGNLDWLSDL 161

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP-ISTPSLLHINYSKSLEVI 244
             L +LDL+   LSK  +W Q ++ + SLT LYL    LPP I T S+ HIN S SL V+
Sbjct: 162 PLLTHLDLSGVNLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTSLAVL 221

Query: 245 DLSNNYLTNSIYPWLFNVSSNLVD-----------------------HIDLGSNQLHGSI 281
           DLS N LT+SIYPWLF  +S LV                        ++DL  N+L GSI
Sbjct: 222 DLSRNGLTSSIYPWLFCFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNELRGSI 281

Query: 282 PLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVS---- 336
           P AFG+M +L HLDL SN L   +P   GNM+SL  L  S N+L GE+ + + ++     
Sbjct: 282 PDAFGNMTTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDLCNLQE 341

Query: 337 --------SG-------STKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGT 381
                   +G       +  N +LE L L++N+  G+ PDL GF  L+ LSL  N+L GT
Sbjct: 342 LWLSRNNLTGLKEKDFLACSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSLGFNQLNGT 401

Query: 382 ISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQL 441
           + +SIGQL++L++L +  NSLRG +S      LS+L  L LS NSLT   S +  P F+ 
Sbjct: 402 LPESIGQLAQLQVLSIPSNSLRGTVSANHLFGLSNLINLDLSFNSLTFNISLEQVPQFRA 461

Query: 442 FNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
             I L SCK+GPRFP WLQ+Q     LD+S +GISD +P+WFW+LT+   +LN+SNN + 
Sbjct: 462 SRIMLASCKLGPRFPNWLQTQEVLRELDISASGISDAIPNWFWNLTSDFKWLNISNNHIS 521

Query: 502 GKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL- 560
           G LP+L     +    +D+SSN  +G IP    N   L+LSKN FSGSIS  C  ++   
Sbjct: 522 GTLPNL----QATPLMLDMSSNCLEGSIPQSVFNAGWLDLSKNLFSGSISLSCGTTNQPS 577

Query: 561 --LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS 618
             L++LDLSNN LSG L +CW ++  L +LNLANN+F G+I DS+  L  + +L L NNS
Sbjct: 578 WGLSHLDLSNNRLSGELSNCWERWKYLFVLNLANNNFSGKIKDSIGLLDQMQTLHLRNNS 637

Query: 619 LSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCY 678
            +G LPS   N   L L+DLGKN LSG+I  W+G SL +L+VL+LRSN+F+G+IP  LC 
Sbjct: 638 FTGALPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQ 697

Query: 679 LSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDT 738
           L  IQ+LDLS NN+SG IPKC  N TAM +++S  L    + +Y+        P  + D+
Sbjct: 698 LKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKRSQVL--FYDTWYDAS-----NPHYYVDS 750

Query: 739 ----WKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR 794
               WKG + EYK  LGLIK ID SSNKL G++  E+ DLV LV+LNLS+NNL G I   
Sbjct: 751 TLVQWKGKEQEYKKTLGLIKSIDFSSNKLIGEIPIEVTDLVELVSLNLSSNNLIGSIPTT 810

Query: 795 IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYA 854
           IGQLK LD LDLS+N   G IP +LS++  LSV+DLS N   GKIP GTQLQ F ASTY 
Sbjct: 811 IGQLKLLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLLGKIPLGTQLQSFDASTYE 870

Query: 855 GNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVC 914
           GNP LCG PL  +C ++E              +D  D    + FY +++LGF +GFWGVC
Sbjct: 871 GNPGLCGPPLLKRCPEDELGGVSFISGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVC 930

Query: 915 GTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQRRIQA 955
           GTLL  SSWR+ Y+  L+++KDWLYV  +VN+ +++R +Q 
Sbjct: 931 GTLLFNSSWRYAYFQLLSKIKDWLYVTTIVNMNRIRRSLQG 971

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/982 (47%), Positives = 613/982 (62%), Gaps = 99/982 (10%)

Query: 25  RVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHV 84
           RV ++   + C++ E+++LL FKQG++D+ G+LSSWG  ++KR+CCKWRGV C+N+TGHV
Sbjct: 28  RVGDAK--VGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHV 85

Query: 85  LGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELAL 144
           + LDL          L G I PSL KLQHL +L+LSWN+F                    
Sbjct: 86  IMLDLSGG------YLGGKIGPSLAKLQHLKHLNLSWNDF-------------------- 119

Query: 145 SSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNW 204
              +  G +P QLGNLS LQ LDLR+N   + GNLDWLS+L  L +LDL+   LSK  +W
Sbjct: 120 ---EVTGILPTQLGNLSNLQSLDLRYNRDMTCGNLDWLSHLHLLTHLDLSFVNLSKAIHW 176

Query: 205 VQVLSNLRSLTNLYLGYCDLPPIS-TPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS 263
            Q +  + +LT LYL    LPPI  T S+ HIN S SL V++L  N LT+SIYPWL N S
Sbjct: 177 PQAVKKMPALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDLTSSIYPWLLNFS 236

Query: 264 SNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPK---------------- 306
           S LV H+DL +N L+GSIP AFG+M +L +LDL  NQL  E+PK                
Sbjct: 237 SCLV-HLDLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLVTLDLSWNHL 295

Query: 307 ------FLGNMSSLKRLVFSYNELRGELSEFI------------QNVSSG-------STK 341
                   GNM++L  L FS N+L GE+ + +            QN  +G       +  
Sbjct: 296 HGSIPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLLEKDFLACS 355

Query: 342 NSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           N++LE L L+ N+  G+ PDL GF  L+ L LE N+L GT+ +SIGQL++L++L L  NS
Sbjct: 356 NNTLEVLDLSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQLQVLSLRSNS 415

Query: 402 LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS 461
           LRG +S      LS L  L LS NSLT+  S +  P FQ   I L SCK+GP FP WL++
Sbjct: 416 LRGTVSANHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLGPHFPNWLRT 475

Query: 462 QNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVS 521
           Q     LD+S +GI++++P+WFW  T+ L + N+SNN + G LP+L+    SY  G+D+S
Sbjct: 476 QKHLSMLDISASGIANVLPNWFWKFTSHLSWFNISNNHISGTLPNLTSHL-SY-LGMDIS 533

Query: 522 SNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSI---SSHLLTYLDLSNNLLSGRLPDC 578
           SN  +G IP    N   L+LSKN FSGSIS  C     SS  L++LDLSNN LSG LP C
Sbjct: 534 SNCLEGSIPQSLFNAQWLDLSKNMFSGSISLSCGTTNQSSWGLSHLDLSNNRLSGELPKC 593

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
             Q+  L +LNLANN+F G+I +S+     + +L L NNSL+G LP    N   L L+DL
Sbjct: 594 REQWKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCRDLRLLDL 653

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
           GKN LSG+IP WIG SL NL+V++LRSN+F+G+IP  LC L  I +LDLS NN+SG IPK
Sbjct: 654 GKNKLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLSGTIPK 713

Query: 699 CFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDT----WKGGQYEYKSILGLIK 754
           C +N + M +    N S++  Y  +L     LM L ++D     WKG + EY   LGL+K
Sbjct: 714 CLNNLSGMAQ----NGSLVITYEEDLLF---LMSLSYYDNTLVQWKGKELEYNKTLGLVK 766

Query: 755 IIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG 814
            ID S+NKL G++  E+ DLV LV+LNLS N L G I   IGQLKSLD LDLSRN   GG
Sbjct: 767 SIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGG 826

Query: 815 IPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESA 874
           IP SLS++  LSV+DLS N  SGKIP GTQLQ F ASTY GNP LCG PL  KC ++E  
Sbjct: 827 IPISLSQIARLSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDE-- 884

Query: 875 PSPSRDDAYY---TPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFL 931
              +R+ ++      +D  D    + FY +++LGF +GFWGVCGTLL+ SSWR+ Y+ FL
Sbjct: 885 ---NREVSFTGLSNEEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAYFQFL 941

Query: 932 TRVKDWLYVEAVVNIAKLQRRI 953
           +++KDWLYV   + ++ L+ ++
Sbjct: 942 SKIKDWLYVTTTICMSDLELKL 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/997 (45%), Positives = 600/997 (60%), Gaps = 100/997 (10%)

Query: 33   ISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRAS 92
            + C++ E+++LL FKQG++D  G LSSWG  + + +CCKWRGV C N+TGHV+ LDL  +
Sbjct: 34   VGCMERERQALLHFKQGVVDHFGTLSSWGNGEGETDCCKWRGVECDNQTGHVIMLDLHGT 93

Query: 93   SDSPV---DALKGTIN---PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSS 146
                +     L G I+   PSL +LQHL +L+LS+N F             ++S + LS 
Sbjct: 94   GHDGMGDFQILGGRISQLGPSLSELQHLKHLNLSFNLF-------------EVSHIILSF 140

Query: 147  AQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQ 206
              F G +P QLGNLS LQ LDL  N   S  NL+WLSYL SL +LDL+   LSK  +W Q
Sbjct: 141  PYFTGVLPTQLGNLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQ 200

Query: 207  VLSNLRS-LTNLYLGYCDLP-PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS 264
             ++ + S LT LYL +  LP  I T S+ H N S SL V+DLS N LT+SI PWLF  SS
Sbjct: 201  AINKMSSSLTELYLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSS 260

Query: 265  NLVD---------------------------------------------HIDLGSNQLHG 279
            +LV                                              H+DL  NQLHG
Sbjct: 261  SLVHLDLFGNDLNGSILDALGNMTNLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHG 320

Query: 280  SIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFI------ 332
            SIP AFG+M +L +LDL SN L   +P  LGNM++L  L  S N+L GE+ + +      
Sbjct: 321  SIPDAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLAHLYLSANQLEGEIPKSLRDLCNL 380

Query: 333  ------QNVSSG-------STKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT 379
                  QN  SG       +  N++LE LYL+ N+  G+ PDL GF  L+ L L  N+L 
Sbjct: 381  QILLLSQNNLSGLLEKDFLACSNNTLESLYLSENQFKGSFPDLSGFSQLRELYLGFNQLN 440

Query: 380  GTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPF 439
            GT+ +SIGQL++L+ L +  NSL+G +S      LS L  L LS N LT+  S +  P F
Sbjct: 441  GTLPESIGQLAQLQGLNIRSNSLQGTVSANHLFGLSKLWDLDLSFNYLTVNISLEQVPQF 500

Query: 440  QLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE 499
            Q   I L SCK+GPRFP WLQ+Q +   LD+S +GISD++P+WFW+LT+ L +LN+SNN 
Sbjct: 501  QAQEIKLASCKLGPRFPNWLQTQKRLQELDISASGISDVIPNWFWNLTSNLVWLNISNNH 560

Query: 500  MKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSI--- 556
            + G LP+L     +   G+D+SSN   G IP    N   L+LSKN FSGS+S  C     
Sbjct: 561  ISGTLPNLEA---TPSLGMDMSSNCLKGSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQ 617

Query: 557  SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYN 616
            SS  L ++DLSNN LSG LP CW Q+  L +LNL NN+F G I +S+  L  + +L L N
Sbjct: 618  SSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRN 677

Query: 617  NSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL 676
            NSL+G LP    N   L L+DLGKN LSG++P WIG +L +L+V++LRSN+F+G+IP  L
Sbjct: 678  NSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLNL 737

Query: 677  CYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLI-- 734
            C L  +Q+LDLS NN+SGIIPKC +N TAM +    N S++  Y   L +    +  I  
Sbjct: 738  CQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQ----NGSLVIAYEERLFVFDSSISYIDN 793

Query: 735  FFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR 794
                WKG + EYK  L L+K ID S+NKL G++  E+ DLV L++LNLS NNL G I   
Sbjct: 794  TVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLM 853

Query: 795  IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYA 854
            IGQLKSLDFLDLS+N   GGIP SLS++  LSV+DLS N  SGKIP GTQL  F ASTY 
Sbjct: 854  IGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYD 913

Query: 855  GNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVC 914
            GNP LCG PL  KC ++E+        +     D  D    + FY +++LGF +GFWGVC
Sbjct: 914  GNPGLCGPPLLKKCQEDETKEVSFT--SLINEKDIQDDTNNIWFYGNIVLGFIIGFWGVC 971

Query: 915  GTLLVKSSWRHGYYNFLTRVKDWLYVEAVVNIAKLQR 951
            GTLL+  SWR+ Y+  L ++KDWL++    NI +L+R
Sbjct: 972  GTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRR 1008

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/976 (45%), Positives = 596/976 (61%), Gaps = 86/976 (8%)

Query: 35  CLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDL-RASS 93
           C++ E+++LL FK+ LID+ G+LS+WG E+EKR+CCKWRGV CSN+TGHV  LDL R + 
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHRENY 99

Query: 94  DSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPI 153
           +     L G I+ SLL+LQHL+YL+L+ + F GS  P FIGSL KL  L LSS    G +
Sbjct: 100 NGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGTL 159

Query: 154 PHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRS 213
            +Q  NLS+LQ LDL +    +  +LD+LS   SL++LDL    LS+  +W+QVL+ L  
Sbjct: 160 SNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLPR 219

Query: 214 LTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLG 273
           L  L L  C L  I +PSL  +N S+SL ++D S N L++SI+ WL N  ++L+D +DL 
Sbjct: 220 LHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLID-LDLS 278

Query: 274 SNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQ 333
            N L GSIP  F +M SLR LDL SNQL+      G M SL +L  S N L GELS+   
Sbjct: 279 HNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLCISENNLIGELSQLFG 338

Query: 334 NVSS------------------------------------GS-----TKNSSLEWLYLAF 352
            V +                                    GS     ++ S L  LYL  
Sbjct: 339 CVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSELVLLYLND 398

Query: 353 NEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFS 412
           N++TG++ D+    SL+ L + NNRL G +S+SIG L +LE L + GNSL+GV+SEA FS
Sbjct: 399 NQLTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGVMSEAHFS 458

Query: 413 NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSN 472
           NLS L  L L+DNSL LKF  +W P FQL  IFL SC +GP FP+WL++Q   + LD+S 
Sbjct: 459 NLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGPPFPQWLRNQTNFMELDISG 518

Query: 473 AGISDIVPDWFWDLTN-QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL 531
           + ISD +P+WFW+L+N +L  L+LS+N+M G LPD S K+                    
Sbjct: 519 SRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKY-------------------- 558

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLA 591
              N+ S++LS N+F G  S  C+I S +L  LDLSNNLL G +PDC   F SL++LNLA
Sbjct: 559 --ANLRSIDLSFNQFEGPASCPCNIGSGILKVLDLSNNLLRGWIPDCLMNFTSLSVLNLA 616

Query: 592 NNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI 651
           +N+F G+I  S+  +  + +LSL+NNS  G LP    N S L  +DL  N L GEIP WI
Sbjct: 617 SNNFSGKILSSIGSMVYLKTLSLHNNSFVGELPLSLRNCSSLAFLDLSSNKLRGEIPGWI 676

Query: 652 GESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711
           GES+P+L VLSLRSN F+G+I   LC+LS+I ILDLSLNNI+GIIPKC +N T+M ++  
Sbjct: 677 GESMPSLKVLSLRSNGFNGSILPNLCHLSNILILDLSLNNITGIIPKCLNNLTSMVQKTE 736

Query: 712 SNLSIISNYYYNLGLRGMLMPLIFFDT-----------WKGGQYEYKSILGLIKIIDLSS 760
           S  S+ +N         +L P    D+           WKG +  Y+S LGL++II+L+ 
Sbjct: 737 SEYSLANN--------AVLSPYFTSDSYDAYQNKMRVGWKGREDGYESTLGLLRIINLAR 788

Query: 761 NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLS 820
           NKL G++ EEI  L+ L+ALNLS N LTG+I  +IGQLK L+ LDLS N   G IP +++
Sbjct: 789 NKLIGEIPEEITGLLLLLALNLSGNTLTGEIPQKIGQLKQLESLDLSGNQLSGVIPITMA 848

Query: 821 RLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRD 880
            L  L+ ++LS N+ SG+IP  TQLQ F AS + GN  LCG PL  KC  +E+  SP  +
Sbjct: 849 DLNFLAFLNLSNNHLSGRIPSSTQLQGFNASQFTGNLALCGQPLLQKCPGDETNQSPPAN 908

Query: 881 DAYYTPDDDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYV 940
           D     +   D+F+   F +SM +GF V FWGV G LL+K SWRH Y+ FL    DWLYV
Sbjct: 909 DDNRGKEVVADEFMKW-FCISMGIGFSVFFWGVSGALLLKRSWRHAYFRFLDESWDWLYV 967

Query: 941 EAVVNIAKLQRRIQAA 956
           +  V     +  ++A 
Sbjct: 968 KVAVCRHDFEENLRAC 983

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115848|ref|XP_002332072.1| predicted protein [Populus trichocarpa] gi|222831958|gb|EEE70435.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/925 (44%), Positives = 560/925 (60%), Gaps = 48/925 (5%)

Query: 35  CLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSD 94
           C++ EK++LL  K  L+DE+  LSSWG  D+   CC W GVRC+N+TGHV  L L    D
Sbjct: 2   CMEREKQALLKLKDDLVDENDQLSSWGTSDD---CCNWTGVRCNNRTGHVYSLQLNQQLD 58

Query: 95  SPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIP 154
             +   KG I+  LL+L+HL YLD+S      + IP+FIGSL  L  L +S     G IP
Sbjct: 59  DSMQ-FKGDISSPLLELKHLAYLDMS--EVRATSIPQFIGSLKHLMHLNMSFCDLTGTIP 115

Query: 155 HQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSL 214
           HQLGNL++L  LDL +NN     +L WLS L +L++LDL+   LS  ++W Q +++L SL
Sbjct: 116 HQLGNLTRLVFLDLSYNNFNKVESLSWLSRLPALKHLDLSTADLSGTTDWFQAINSLPSL 175

Query: 215 TNLYLGYCDLPPISTPSLLHINYS-KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLG 273
            NLYL  C L  + +P L   NYS  SL  IDLS N L +SI+PWL N +++LV H+ L 
Sbjct: 176 HNLYLSGCGLSSVISPPLFRSNYSPASLADIDLSQNTLKSSIFPWLLNFNNSLV-HLKLY 234

Query: 274 SNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQ 333
            N+  G                       ++PK LG M +L+ L+ S N   GE+   + 
Sbjct: 235 DNEFQG-----------------------KIPKALGAMINLESLLLSGNHFEGEIPRALA 271

Query: 334 NVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLE 393
           N+         LE L L++N + G +PD+     +  L L +N+L G+  ++I  LS L 
Sbjct: 272 NLGR-------LESLDLSWNSLVGEVPDMKNLSFITRLFLSDNKLNGSWIENIRLLSDLA 324

Query: 394 LLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGP 453
            L +S N + G ISE  F NL+ L  L +S N+     S +WTPPFQL  + + SCK+GP
Sbjct: 325 YLDISYNFMNGTISEINFLNLTELTHLDISSNAFVFNLSLNWTPPFQLDTLIMSSCKLGP 384

Query: 454 RFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG---KLPDLSRK 510
            FP+WL++Q +   LD+SNAGI D +   F  L  +L YLN+S+N++ G   KLP +   
Sbjct: 385 SFPQWLRTQRRISELDISNAGIEDDISSRFGKLPFKLNYLNISHNQITGEAHKLPSVVGD 444

Query: 511 FDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570
                  +D+SSN   G +PL P N + LNLSKN FSG+IS LCSI+   L YLDLS+N 
Sbjct: 445 ----SATVDMSSNFLHGSLPL-PLNATILNLSKNLFSGTISNLCSIACERLFYLDLSDNC 499

Query: 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
           LSG +PDCW     L ILNLA N+F G IP S+  L  I +L+L NNS SG LP    N 
Sbjct: 500 LSGEIPDCWMTCKELNILNLAGNNFSGRIPASLGSLVFIQTLNLRNNSFSGELPPSLANC 559

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
           +QL ++DLG+N LSG+IP+WIGE+L +LVVL LRSN   G +P  LC+L+H+QILDLS N
Sbjct: 560 TQLEILDLGENRLSGKIPSWIGENLSSLVVLRLRSNYLDGTLPLVLCHLAHLQILDLSHN 619

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
           NIS  IP CF NF+AM+K  S+   I  +  + L    +L         KG + EY   L
Sbjct: 620 NISDDIPHCFSNFSAMSKNGSTYEFIGHSNNHTLPFFIILYHDSVRVVLKGMELEYGKTL 679

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH 810
             +KI+DLSSN L G++ + I  L GLV+L+LSNN LTG I PRIG ++SL+ LDLS N 
Sbjct: 680 EQVKIMDLSSNNLSGEIPDGIAKLEGLVSLHLSNNRLTGIIPPRIGLMRSLESLDLSTNQ 739

Query: 811 FFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLD 870
             GG+P+ L  L  LS +++SYNN SGKIP  TQLQ F  +++  N ELCG PL N+C  
Sbjct: 740 LSGGLPNGLRDLNFLSSLNVSYNNLSGKIPLSTQLQTFDNNSFVANAELCGKPLSNECAA 799

Query: 871 EESAPSPSRDDAYYTPD-DDGDQFITLGFYMSMILGFFVGFWGVCGTLLVKSSWRHGYYN 929
           E+ A  PS        D  D D FI+  FY+SM  GF  GFW VCGTLL+   WRH ++ 
Sbjct: 800 EQ-AHDPSISQGSKNVDIQDEDGFISRRFYLSMGTGFATGFWAVCGTLLLYRPWRHAFFR 858

Query: 930 FLTRVKDWLYVEAVVNIAKLQRRIQ 954
            +  ++DWL+V  V+ +A+LQRR++
Sbjct: 859 LMNHIEDWLHVTTVLIMARLQRRLR 883

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1025
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.469	0.531	0.332	1.2e-75
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.463	0.533	0.299	1.8e-71
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.485	0.488	0.289	1.2e-64
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.48	0.589	0.296	1.1e-62
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.480	0.582	0.288	6.4e-58
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.469	0.502	0.288	3e-56
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.320	0.330	0.3	5.4e-56
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.433	0.402	0.291	1.6e-55
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.332	0.341	0.282	5.2e-55
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.401	0.436	0.305	7.2e-55

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 173/520 (33%), Positives = 256/520 (49%)

Query:    11 YVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCC 70
             ++S + +IL  L+     S     C+  E+++LL F+  L D S  L SW   D    CC
Sbjct:    10 FISFLILILL-LKNLNYGSAASPKCISTERQALLTFRAALTDLSSRLFSWSGPD----CC 64

Query:    71 KWRGVRCSNKTGHVLGLDLR-ASSDSPVD-----ALKGTINPSLLKLQHLTYLDLSWNNF 124
              W GV C  +T HV+ +DLR  S D   D     +L+G I+PSL +L+ L+YLDLS N+F
Sbjct:    65 NWPGVLCDARTSHVVKIDLRNPSQDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDF 124

Query:   125 SGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNXXXXXX 184
             +   IPEFIG +  L  L LSS+ F+G IP  LGNLSKL+ LDL   +   SG       
Sbjct:   125 NELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRAS 184

Query:   185 XXXXXXXXXADCKLSKFS---------NWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHI 235
                      +  K               W+Q  S + +L  L+L   +L  +  P+L   
Sbjct:   185 NLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLP-PTLSSS 243

Query:   236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
                K LEV+DLS N L + I  WLF ++ NL   + L  + L GSIP  F ++  L  LD
Sbjct:   244 ADLKLLEVLDLSENSLNSPIPNWLFGLT-NL-RKLFLRWDFLQGSIPTGFKNLKLLETLD 301

Query:   296 LLSN-QLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFN 353
             L +N  L+ E+P  LG++  LK L  S NEL G++  F+   S    K +SL +L L+ N
Sbjct:   302 LSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRN--KGNSLVFLDLSSN 359

Query:   354 EITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFS 412
             ++ GT+P+ LG   +LQ L L +N  TG++  SIG                G I+E+L  
Sbjct:   360 KLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESL-G 418

Query:   413 NLSSLDTLQLSDNSL--TLKFSHDWTPPFQLFNIFLGS---CKIGPRFPK-WLQSQNQTV 466
              L+ L  L L  N+    L+ SH +     L +I L +     +  + P  W+      +
Sbjct:   419 QLAELVDLNLMANTWGGVLQKSH-FVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLEL 477

Query:   467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPD 506
              + + N  I  + P W   +  +L ++ L N  ++  +PD
Sbjct:   478 -IQIENCRIG-LFPMWL-QVQTKLNFVTLRNTGIEDTIPD 514

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
 Identities = 159/531 (29%), Positives = 241/531 (45%)

Query:    26 VANSNNIIS---CLDEEKESLLAFKQGLIDESG------ILSSWGREDEKRNCCKWRGVR 76
             ++NS  +I+   CL +++++LL FK      S       IL +  +     +CC W G+ 
Sbjct:    14 LSNSILVIAKDLCLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWGGIS 73

Query:    77 CSNKTGHVLGLDLRASSDSPVDALKGTI--NPSLLKLQHLTYLDLSWNNFSGSPIPEFIG 134
             C  KTG V+ LDL  +SD     L G +  N SL +LQHL  LDLS+N+ S + +P+  G
Sbjct:    74 CDPKTGVVVELDL-GNSD-----LNGRLRSNSSLFRLQHLQSLDLSYNDLSCT-LPDSSG 126

Query:   135 SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXA 194
             +   L  L L      G IP  L +LS L  LDL +N+  +                   
Sbjct:   127 NFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTGEILDSMGNLKHLRVLSLT 186

Query:   195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS 254
              CK +        L NL  LT+L L +         S+ ++   KSL V++L        
Sbjct:   187 SCKFT--GKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNL---KSLRVLNLHRCNFFGK 241

Query:   255 IYPWLFNVSSNLVDHIDLGSNQLHGSIP-------------LAFGHMASLRHLDLLSNQL 301
             I P      SNL D +D+  N+     P             L   +++SL ++DL SNQ 
Sbjct:   242 I-PTSLGSLSNLTD-LDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQF 299

Query:   302 REVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD 361
             + +     NMSSL +L  ++ ++ G  + F   + S      SL  L L  N+ +G +  
Sbjct:   300 KAM--LPSNMSSLSKLE-AF-DISG--NSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLK- 352

Query:   362 LGGF--PS-LQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLD 418
             +G    PS LQ L +  N + G I +SI +               G++  ++F  L SL 
Sbjct:   353 IGNISSPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLR 412

Query:   419 TLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI 478
             +L LS  +L +  SH    P  + ++ L SC I  +FPK+L++Q     LD+S   I   
Sbjct:   413 SLDLSGINLNISSSHHL--PSHMMHLILSSCNIS-QFPKFLENQTSLYHLDISANQIEGQ 469

Query:   479 VPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
             VP+W W L   L Y+N++ N   G+L  L     S+   I  S N+F G I
Sbjct:   470 VPEWLWRLPT-LRYVNIAQNAFSGELTMLPNPIYSF---I-ASDNKFSGEI 515

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.2e-64, Sum P(2) = 1.2e-64
 Identities = 158/545 (28%), Positives = 244/545 (44%)

Query:     2 SSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQ--GLIDESGILSS 59
             S K   L++ +  + +I   L   V+ + ++  C  ++K++LL FK   G++D      S
Sbjct:    43 SEKMSFLIRSICFLILIPSFLITFVSATQHL--CHSDQKDALLDFKNEFGMVDSK----S 96

Query:    60 WGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDL 119
             W     K +CC W G+ C  K+G+V+GLDL  SS      LK   N SL KL+HL  L+L
Sbjct:    97 WVN---KSDCCSWDGITCDAKSGNVIGLDL--SSIFLYGQLKS--NSSLFKLRHLRDLNL 149

Query:   120 SWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLF----- 174
             + NNF+ SPIP     L  L  L LS +  +G IP  L  L+KL  LDL  ++ F     
Sbjct:   150 ANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQIPINLLQLTKLVSLDLSSSDFFGDESF 209

Query:   175 ---SSGNXXXXXXXXXXXXXXXADCKLSKFSNWV-QVLSNLRSLTNLYLGYCDLPPISTP 230
                S                   D    K S+ + +  SN+RSL +L L  C+L      
Sbjct:   210 HYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLFGEFPS 269

Query:   231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
             S+L I    +L+ IDL NN       P +F+ +++L+  + +      G+IP +   + +
Sbjct:   270 SILLI---PNLQSIDLGNNPNLRGNLP-VFHENNSLLK-LTILYTSFSGAIPDSISSLKN 324

Query:   291 LRHLDL-LSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
             L  L L +S    ++P  LGN+S L  L  S N L GE+   I N++        L   Y
Sbjct:   325 LTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQ-------LTNFY 377

Query:   350 LAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISE 408
             +  N+++G +P  L     L  +SL +N+ TG++  SI Q               G I  
Sbjct:   378 VGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILS 437

Query:   409 ALFSNLSSLDTLQLSDNSLTLKFSHD---WTPPFQLFNIF-LGSCKIGPRFPKWLQSQNQ 464
              L   + SL  + LS N L      +     P  + F I+     K+ P       S  Q
Sbjct:   438 PLLK-IPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQ 496

Query:   465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
                L +S   IS    +   D  + L YL+L +  +    P+  RK  +    +D+S+N+
Sbjct:   497 LGTLYISRIPIS--TTNITSDFPSNLEYLSLRSCNITD-FPEFIRKGRNLQI-LDLSNNK 552

Query:   525 FDGPI 529
               G +
Sbjct:   553 IKGQV 557

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 161/543 (29%), Positives = 245/543 (45%)

Query:     3 SKCFLLLQYVSLISVILFQLE-PRVANSNNIISCLDEEKESLLAFKQGL-IDESG---IL 57
             S+CFL +  +  IS   F L  P    S     C  +++++LL  K+   I  +G   + 
Sbjct:     6 SRCFLGI--IITISFFFFLLSLPNTFASPTRSLCRSDQRDALLELKKEFPIHSNGSHHVT 63

Query:    58 S-SWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTY 116
             + SW +  +   CC W GV C    G V+ L+L +   +   +LK +   SL KL+HL +
Sbjct:    64 TLSWNKTVD---CCSWEGVTCDATLGEVISLNLVSYIANT--SLKSS--SSLFKLRHLRH 116

Query:   117 LDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSS 176
             L+LS  N  G  IP  IG+L  L+ L LS  Q  G  P  +GNL++L+ +DL  N L   
Sbjct:   117 LELSHCNLQGE-IPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDLWVNAL--G 173

Query:   177 GNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNLRSLT--NLYLGYCDLPPISTPSLLH 234
             GN                  + ++F+    VLSNL SL+  +L   Y +    +  S LH
Sbjct:   174 GNIPTSFANLTKLSELHL--RQNQFTGGDIVLSNLTSLSIVDLSSNYFNSTISADLSQLH 231

Query:   235 INYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS---L 291
                  +LE   +S N        +L  + S LVD I L  NQ  G  P+ FG+  S   L
Sbjct:   232 -----NLERFWVSENSFFGPFPSFLLMIPS-LVD-ICLSENQFEG--PINFGNTTSSSKL 282

Query:   292 RHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
               LD+  N L   +PK +  + SL+ L  S+N  RG+       V S  +K  +L+ LYL
Sbjct:   283 TELDVSYNNLDGLIPKSISTLVSLEHLELSHNNFRGQ-------VPSSISKLVNLDGLYL 335

Query:   351 AFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEA 409
             + N   G +P  +    +L+ L L +N   G +  SI +               G + + 
Sbjct:   336 SHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQC 395

Query:   410 LFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF--NIFLGSCKI-GPRFPKWLQSQNQTV 466
             ++ + S LD++ LS NS    F        +    +  L S  + GP  P+W+ +     
Sbjct:   396 IWRS-SKLDSVDLSYNSFN-SFGRILELGDESLERDWDLSSNSLQGP-IPQWICNFRFFS 452

Query:   467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526
              LD SN  ++  +P    + T+  Y LNL NN + G +PD        G  +DVS N   
Sbjct:   453 FLDFSNNHLNGSIPQCLKNSTD-FYMLNLRNNSLSGFMPDFCMDGSMLG-SLDVSLNNLV 510

Query:   527 GPI 529
             G +
Sbjct:   511 GKL 513

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
 Identities = 157/544 (28%), Positives = 244/544 (44%)

Query:    11 YVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGL-IDESG-ILSSW-GREDEKR 67
             + S I + L  L   +A+S+    C D+++++LL F+    I+ S  I++ W G  ++  
Sbjct:    11 FSSRIIIFLSLLVHSLASSSPHF-CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKST 69

Query:    68 NCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGS 127
             +CC W GV C++K+G V+ LD+  +  +  + LK   N SL KLQ+L +LDL+  N  G 
Sbjct:    70 DCCLWNGVTCNDKSGQVISLDIPNTFLN--NYLK--TNSSLFKLQYLRHLDLTNCNLYGE 125

Query:   128 PIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLF-----SSGNXXXX 182
              IP  +G+L  L+ + L   +F G IP  +GNL++L+ L L  N L      S GN    
Sbjct:   126 -IPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRL 184

Query:   183 XXXXXXXXX-------XXADCK----LSKFSNWV--QV---LSNLRSLTNLYLGYCDLPP 226
                                D K    LS  SN +  ++   L NL +L +L L +  L  
Sbjct:   185 VNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVG 244

Query:   227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
                P+   I     L V+   NN L+ +I P  F   + L   + L SN    + P    
Sbjct:   245 -EVPA--SIGNLIELRVMSFENNSLSGNI-PISFANLTKLSIFV-LSSNNFTSTFPFDMS 299

Query:   287 HMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345
                +L + D+  N      PK L  + SL+ +    N+  G + EF  N SS STK   L
Sbjct:   300 IFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPI-EFA-NTSS-STK---L 353

Query:   346 EWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRG 404
             + L L  N + G IP+ +    +L+ L + +N  TG I  +I +               G
Sbjct:   354 QDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEG 413

Query:   405 VISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI-GPRFPKWLQSQN 463
              +   L+     L+T+ LS NS +  F +       +  + L S    GP  P  +   +
Sbjct:   414 EVPACLWR----LNTMVLSHNSFS-SFENTSQEEALIEELDLNSNSFQGP-IPYMICKLS 467

Query:   464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSN 523
                 LD+SN   S  +P    + +  +  LNL +N   G LPD+  K       +DVS N
Sbjct:   468 SLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL-VSLDVSHN 526

Query:   524 QFDG 527
             Q +G
Sbjct:   527 QLEG 530

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 3.0e-56, Sum P(2) = 3.0e-56
 Identities = 158/547 (28%), Positives = 253/547 (46%)

Query:     2 SSKCFLLLQYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGL-IDES------ 54
             +SK  + +    +   I   L+   A + N+  C  E++++LLAFK    I +       
Sbjct:     6 NSKSIIRITLSFIFLFICHFLDVLAAPTRNL--CRPEQRDALLAFKNEFEIGKPSPDHCK 63

Query:    55 --GILS-----SWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTI--N 105
               GI S     SWG   +   CC W GV C+ K+G V+ LDL  SS      L G    N
Sbjct:    64 IYGIESPRKTDSWGNNSD---CCNWEGVTCNAKSGEVIELDLSCSS------LHGRFHSN 114

Query:   106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
              S+  L  LT LDLS+N+F G  I   I +L  L+ L LSS  F+G I + +GNLS+L  
Sbjct:   115 SSIRNLHFLTTLDLSFNDFKGQ-ITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTY 173

Query:   166 LDLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKF-SNWVQVLSNLRSLTNLYLGYCDL 224
             L+L F+N FS                   D   ++F   +   +  L  LT L L + + 
Sbjct:   174 LNL-FDNQFSG---QAPSSICNLSHLTFLDLSYNRFFGQFPSSIGGLSHLTTLSL-FSNK 228

Query:   225 PPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLA 284
                  PS +  N S +L  +DLSNN  +  I  ++ N+S   +  + L SN   G IP +
Sbjct:   229 FSGQIPSSIG-NLS-NLTTLDLSNNNFSGQIPSFIGNLSQ--LTFLGLFSNNFVGEIPSS 284

Query:   285 FGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSS----GS 339
             FG++  L  L +  N+L    P  L N++ L  L  S N+  G L   I ++S+     +
Sbjct:   285 FGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDA 344

Query:   340 TKNS-------------SLEWLYLAFNEITGTIPDLGGF--PS-LQILSLENNRLTGTIS 383
             + N+             SL ++ L  N++ GT+ + G    PS L  L + NN   G I 
Sbjct:   345 SDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTL-EFGNISSPSNLYELDIGNNNFIGPIP 403

Query:   384 KSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPF--QL 441
              SI +              +G +  ++FS+L SL  L +S  + T +   ++   +  +L
Sbjct:   404 SSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRL 463

Query:   442 FNIFLGSCKIGPRFPKWLQSQ-NQTV-ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE 499
               + L    +       +    +Q + +L +S  GI++  P+ F    ++L +L++SNN+
Sbjct:   464 LLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGITEF-PE-FVRTQHELGFLDISNNK 521

Query:   500 MKGKLPD 506
             +KG++PD
Sbjct:   522 IKGQVPD 528

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 5.4e-56, Sum P(2) = 5.4e-56
 Identities = 105/350 (30%), Positives = 158/350 (45%)

Query:   573 GRLPDCW-FQFDSLAILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGS 631
             G +P C   Q  SL++LNL NNS  G +P+     + +              P+     S
Sbjct:   629 GLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCS 688

Query:   632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG---NIPFQLCYLSHIQILDLS 688
              L ++++  N ++   P W+  SLP L VL LRSN F G   N+         ++I D+S
Sbjct:   689 ALEILNVESNNINDTFPFWLN-SLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVS 747

Query:   689 LNNISGIIPK-CFHNFTAMTKEKXXXXXXXXXXXXXXGLRGMLMPLIFFDTWKGGQYEYK 747
              N+  G +P   F N+TA++K +                 G    L+  +  KG   E +
Sbjct:   748 HNDFVGTLPSDYFMNWTAISKSETELQYIGDPEDY-----GYYTSLVLMN--KGVSMEMQ 800

Query:   748 SILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS 807
              IL    +ID + NK+ GK+ E +  L  L  LNLS+N  TG I   +  L +L+ LD+S
Sbjct:   801 RILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDIS 860

Query:   808 RNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNK 867
             +N   G IP           +++S+N   G IP+GTQ  R   S+Y GNP + G  L + 
Sbjct:   861 QNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDV 920

Query:   868 CLDEESAPSPSRXXX--XXXXXXXXXQFIT-----LGFYMSMILGFFVGF 910
             C D   AP P +              + I+     LGF   M+ G  +G+
Sbjct:   921 CGDIH-APRPPQAVLPHSSSSSSEEDELISWIAACLGFAPGMVFGLTMGY 969

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 138/474 (29%), Positives = 204/474 (43%)

Query:    36 LDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDS 95
             L+ E + LL  K   +D    L +W   D     C W GV CSN +     L L  SS  
Sbjct:    27 LNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLNLSSM- 83

Query:    96 PVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPH 155
                 L G ++PS+  L HL  LDLS+N  SG  IP+ IG+   L  L L++ QF G IP 
Sbjct:    84 ---VLSGKLSPSIGGLVHLKQLDLSYNGLSGK-IPKEIGNCSSLEILKLNNNQFDGEIPV 139

Query:   156 QLGNLSKLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNLRSLT 215
             ++G L  L+ L + +NN  S                      +S      + + NL+ LT
Sbjct:   140 EIGKLVSLENLII-YNNRISGSLPVEIGNLLSLSQLVTYSNNIS--GQLPRSIGNLKRLT 196

Query:   216 NLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSN 275
             +   G  ++   S PS   I   +SL ++ L+ N L+  + P    +   L   + L  N
Sbjct:   197 SFRAGQ-NMISGSLPS--EIGGCESLVMLGLAQNQLSGEL-PKEIGMLKKL-SQVILWEN 251

Query:   276 QLHGSIPLAFGHMASLRHLDLLSNQL-REVPKFLGNMSSLKRLVFSYNELRGELSEFIQN 334
             +  G IP    +  SL  L L  NQL   +PK LG++ SL+ L    N L G +   I N
Sbjct:   252 EFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGN 311

Query:   335 VSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQXXXXX 393
             +S       ++E +  + N +TG IP +LG    L++L L  N+LTGTI   +       
Sbjct:   312 LSY------AIE-IDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLS 364

Query:   394 XXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSL--TLKFSHDWTPPFQLFNIFLGSCKI 451
                       G I    F  L  L  LQL  NSL  T+     W     L+ + +    +
Sbjct:   365 KLDLSINALTGPIPLG-FQYLRGLFMLQLFQNSLSGTIPPKLGWYS--DLWVLDMSDNHL 421

Query:   452 GPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLP 505
               R P +L   +  + L++    +S  +P         L  L L+ N + G+ P
Sbjct:   422 SGRIPSYLCLHSNMIILNLGTNNLSGNIPTGI-TTCKTLVQLRLARNNLVGRFP 474

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 5.2e-55, Sum P(3) = 5.2e-55
 Identities = 103/364 (28%), Positives = 157/364 (43%)

Query:   157 LGNLSKLQVLDL---RFNN-LFSSGNXXXXXXXXXXXXXXXADCKLSKFSNWVQVLSNLR 212
             L  L  L++LDL   RFNN +F   N                   L K    +  L +L 
Sbjct:    68 LSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLVKEFKDLTNLEHLD 127

Query:   213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDL 272
                N + G   +P     SL      + LE++DLS+N   + I+P+L + +S  +  + L
Sbjct:   128 LRGNRFNG--SIPTQDYNSLRRF---RKLEILDLSDNLFNSRIFPFLNSATS--LKSLSL 180

Query:   273 GSNQLHGSIPLA-FGHMASLRHLDLLSNQLR-EVP-KFLGNMSSLKRLVFSYNELRG--E 327
               N + G  P      + ++  LDL  N+    +P + L  +  LK L  S NE     E
Sbjct:   181 WGNNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVE 240

Query:   328 LS-EFIQNVS-SGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISK 384
             L  +F +    SG+    ++E L L+ N++ G  P  L     L++L L +N+LTG +  
Sbjct:   241 LQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPS 300

Query:   385 SIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSD--NSLTLKFSHDWTPPFQLF 442
             ++                 G  S  L +NLS L  L+L    NSL ++F   W P FQL 
Sbjct:   301 ALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLV 360

Query:   443 NIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG 502
              I L SC +  + P +L  Q     +D+S+  I    P W  +   +L  L L NN    
Sbjct:   361 VIALRSCNL-EKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS 419

Query:   503 -KLP 505
              +LP
Sbjct:   420 FQLP 423

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 7.2e-55, Sum P(2) = 7.2e-55
 Identities = 145/475 (30%), Positives = 211/475 (44%)

Query:    59 SWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTI--NPSLLKLQHLTY 116
             SW    +   CC W G+ C  K+G V+ LDL  S       L G+   N SL +LQ+L  
Sbjct:    79 SWRNNSD---CCNWEGITCDTKSGEVIELDLSCSW------LYGSFHSNSSLFRLQNLRV 129

Query:   117 LDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSS 176
             LDL+ N+  G  IP  IG+L  L+ L LS  QF G IP  + NLS+L  L L  N    S
Sbjct:   130 LDLTQNDLDGE-IPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQF--S 186

Query:   177 GNXXXXXXXXXXXXXXXADCKLSKFSNWV-QVLSNLRSLTNLYLGYCDLPPISTPSLLHI 235
             G                 +   ++FS  +   + NL +LT L L   D      PS +  
Sbjct:   187 GQIPSSIGNLSHLTSL--ELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFG-QIPSSIG- 242

Query:   236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
             N ++ L  + LS N     I     N++  +V  +D  SN+L G++P++  ++  L  L 
Sbjct:   243 NLAR-LTYLYLSYNNFVGEIPSSFGNLNQLIVLQVD--SNKLSGNVPISLLNLTRLSALL 299

Query:   296 LLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNE 354
             L  NQ    +P  +  +S+L     S N   G L   + N+         L  L L+ N+
Sbjct:   300 LSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPP-------LIRLDLSDNQ 352

Query:   355 ITGTIPDLGGF--PS-LQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXR-GVISEAL 410
             + GT+   G    PS LQ L + +N   GTI +S+ +              +   +  ++
Sbjct:   353 LNGTL-HFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSI 411

Query:   411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF-------NIFLGSCKIG-----PR---- 454
             FS+L SLD L+LS  + T    +D  P F+         N+   + K       P     
Sbjct:   412 FSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQ 471

Query:   455 -----------FPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
                        FP+ L++Q++   LDVSN  I   VP W W L N L+YLNLSNN
Sbjct:   472 SLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPN-LFYLNLSNN 525

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037814001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (996 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1025
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-44
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  230 bits (588), Expect = 1e-62
 Identities = 204/663 (30%), Positives = 296/663 (44%), Gaps = 128/663 (19%)

Query: 38  EEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPV 97
           EE E LL+FK  + D    LS+W   +   + C W+G+ C+N +  V+ +DL   + S  
Sbjct: 29  EELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSS-RVVSIDLSGKNIS-- 82

Query: 98  DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQL 157
               G I+ ++ +L ++  ++LS N  SG                         PIP  +
Sbjct: 83  ----GKISSAIFRLPYIQTINLSNNQLSG-------------------------PIPDDI 113

Query: 158 GNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNL 217
              S                        SSLRYL+L++   +                  
Sbjct: 114 FTTS------------------------SSLRYLNLSNNNFTG----------------- 132

Query: 218 YLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQL 277
                    I   S+       +LE +DLSNN L+  I   + + SS  V  +DLG N L
Sbjct: 133 --------SIPRGSI------PNLETLDLSNNMLSGEIPNDIGSFSSLKV--LDLGGNVL 176

Query: 278 HGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVS 336
            G IP +  ++ SL  L L SNQL  ++P+ LG M SLK +   YN L GE+   I  ++
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 337 SGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELL 395
           S       L  L L +N +TG IP  LG   +LQ L L  N+L+G I  SI  L KL  L
Sbjct: 237 S-------LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 396 LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRF 455
            LS NSL G I E L   L +L+ L L  N+ T K     T   +L  + L S K     
Sbjct: 290 DLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 456 PKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYG 515
           PK L   N    LD+S   ++  +P+     +  L+ L L +N ++G++P          
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPK--------- 398

Query: 516 PGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRL 575
               + + +          ++  + L  N FSG +    +    L+ +LD+SNN L GR+
Sbjct: 399 ---SLGACR----------SLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRI 444

Query: 576 PDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTL 635
               +   SL +L+LA N FFG +PDS    R + +L L  N  SG +P    + S+L  
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695
           + L +N LSGEIP  +  S   LV L L  N+  G IP     +  +  LDLS N +SG 
Sbjct: 504 LKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 696 IPK 698
           IPK
Sbjct: 563 IPK 565

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 3e-60
 Identities = 202/668 (30%), Positives = 306/668 (45%), Gaps = 122/668 (18%)

Query: 201 FSNWVQVL-SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWL 259
              W  +  +N   + ++ L   ++    + ++  + Y   ++ I+LSNN L+  I   +
Sbjct: 57  VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPY---IQTINLSNNQLSGPIPDDI 113

Query: 260 FNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLV 318
           F  SS+L  +++L +N   GSIP   G + +L  LDL +N L  E+P  +G+ SSLK L 
Sbjct: 114 FTTSSSLR-YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170

Query: 319 FSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNR 377
              N L G++   + N++S       LE+L LA N++ G IP +LG   SL+ + L  N 
Sbjct: 171 LGGNVLVGKIPNSLTNLTS-------LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 378 LTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTP 437
           L+G I   IG L+ L  L L  N+L G I  +L  NL +L  L L  N L+         
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLS--------- 273

Query: 438 PFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSN 497
                         GP                         +P   + L   L  L+LS+
Sbjct: 274 --------------GP-------------------------IPPSIFSLQK-LISLDLSD 293

Query: 498 NEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLP---PNVSSLNLSKNKFSGSISFLC 554
           N + G++P+L  +  +    + + SN F G IP+     P +  L L  NKFSG I    
Sbjct: 294 NSLSGEIPELVIQLQNL-EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--K 350

Query: 555 SISSHL-LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLS 613
           ++  H  LT LDLS N L+G +P+      +L  L L +NS  GEIP S+   RS+  + 
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410

Query: 614 LYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673
           L +NS SG LPS F     +  +D+  N L G I +   + +P+L +LSL  NKF G +P
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLP 469

Query: 674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPL 733
                   ++ LDLS N  SG +P+   + +                         LM L
Sbjct: 470 -DSFGSKRLENLDLSRNQFSGAVPRKLGSLSE------------------------LMQL 504

Query: 734 IFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP 793
                                   LS NKL G++ +E+     LV+L+LS+N L+GQI  
Sbjct: 505 -----------------------KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTY 853
              ++  L  LDLS+N   G IP +L  +  L  +++S+N+  G +P         AS  
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601

Query: 854 AGNPELCG 861
           AGN +LCG
Sbjct: 602 AGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  173 bits (439), Expect = 4e-44
 Identities = 169/597 (28%), Positives = 250/597 (41%), Gaps = 130/597 (21%)

Query: 246 LSNNYLTNSIYPWLFNVSSNL--VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE 303
           LSN   +  +  W     +N   V  IDL    + G I  A   +  ++ ++L +NQL  
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS- 106

Query: 304 VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLG 363
                                 G + + I       T +SSL +L L+ N  TG+IP  G
Sbjct: 107 ----------------------GPIPDDI------FTTSSSLRYLNLSNNNFTGSIPR-G 137

Query: 364 GFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS 423
             P+L+ L L NN L+G I   IG  S L++L L GN L G I  +L +NL+SL+ L L+
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLA 196

Query: 424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWF 483
            N L  +   +      L  I+LG   +    P  +        LD+    ++  +P   
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 484 WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543
            +L N L YL L  N++ G +P                               S  +L K
Sbjct: 257 GNLKN-LQYLFLYQNKLSGPIPP------------------------------SIFSLQK 285

Query: 544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSM 603
                            L  LDLS+N LSG +P+   Q  +L IL+L +N+F G+IP ++
Sbjct: 286 -----------------LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 604 SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSL 663
           + L  +  L L++N  SG +P      + LT++DL  N L+GEIP  +  S  NL  L L
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLIL 387

Query: 664 RSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYN 723
            SN   G IP  L     ++ + L  N+ SG +P  F                       
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF----------------------- 424

Query: 724 LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS 783
                  +PL++F                   +D+S+N L G++     D+  L  L+L+
Sbjct: 425 -----TKLPLVYF-------------------LDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 784 NNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840
            N   G + P     K L+ LDLSRN F G +P  L  L  L  + LS N  SG+IP
Sbjct: 461 RNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 8e-15
 Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 739 WKGGQYEYKSILG--LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIG 796
           W G   ++ S  G   I  + L +  L G +  +I  L  L ++NLS N++ G I P +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 797 QLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK--GTQLQRFGASTYA 854
            + SL+ LDLS N F G IP SL +L  L +++L+ N+ SG++P   G +L    +  + 
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Query: 855 GNPELCGLP 863
            N  LCG+P
Sbjct: 524 DNAGLCGIP 532

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 66.9 bits (163), Expect = 2e-11
 Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 17/233 (7%)

Query: 199 SKFSNWVQVLSNLRSLTNLYLGYCDLP--PISTPSLLHINYSKSLEVIDLSNNYLTNSIY 256
               + +  L    +L NL               ++  +    +L  +DL NN +T  I 
Sbjct: 74  LLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIP 132

Query: 257 PWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKR 316
           P +  + SNL   +DL  N++  S+P    ++ +L++LDL  N L ++PK L N+S+L  
Sbjct: 133 PLIGLLKSNL-KELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190

Query: 317 LVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENN 376
           L  S N+        I ++       S+LE L L+ N I   +  L    +L  L L NN
Sbjct: 191 LDLSGNK--------ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Query: 377 RLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL 429
           +L      SIG LS LE L LS N +  + S     +L++L  L LS NSL+ 
Sbjct: 243 KLEDLPE-SIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSN 291

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 65.8 bits (160), Expect = 4e-11
 Identities = 70/286 (24%), Positives = 120/286 (41%), Gaps = 26/286 (9%)

Query: 153 IPHQLGNLSKLQVLDLRFNNLFSSGNLDWL------SYLSSLRYLDLADCKLSKFSNWVQ 206
           +      L    +  L   +L S   +  L        L  L  LDL   +L    + + 
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL 113

Query: 207 VLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL 266
            L+NL SL        D+PP+            +L+ +DLS+N +  S+   L N+ +  
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLL------KSNLKELDLSDNKIE-SLPSPLRNLPNLK 166

Query: 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRG 326
             ++DL  N L   +P    ++++L +LDL  N++ ++P  +  +S+L+ L  S N    
Sbjct: 167 --NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS--- 220

Query: 327 ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSI 386
                I  + S  +   +L  L L+ N++      +G   +L+ L L NN+++     S+
Sbjct: 221 -----IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSL 273

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFS 432
           G L+ L  L LSGNSL   +       L     L L      L+  
Sbjct: 274 GSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 577 DCWFQFDSLA------ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
           DC  QFDS         L L N    G IP+ +S LR + S++L  NS+ G +P    + 
Sbjct: 408 DC--QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673
           + L ++DL  N  +G IP  +G+ L +L +L+L  N   G +P
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 30/89 (33%), Positives = 46/89 (51%)

Query: 564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL 623
           L L N  L G +P+   +   L  +NL+ NS  G IP S+  + S+  L L  NS +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIG 652
           P      + L +++L  N LSG +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 71/283 (25%), Positives = 103/283 (36%), Gaps = 48/283 (16%)

Query: 110 KLQHLTYLDLSWNNFS---GSPIPEFIGSLGKLSELALSSAQFAGPIP-------HQLGN 159
           KL  L  L L  N         +   +     L EL LS     G IP         L  
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTK 79

Query: 160 LSKLQVLDLRFNNLFS---SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVL-----SNL 211
              LQ LDL  +N       G L+ L   SSL+ L L +  L      +++L        
Sbjct: 80  GCGLQELDLS-DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG--LRLLAKGLKDLP 136

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSK-SLEVIDLSNNYLTNSIYPWL---FNVSSNLV 267
            +L  L LG   L   S  +L     +   L+ ++L+NN + ++    L      + NL 
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 268 DHIDLGSNQL--HGSIPLA--FGHMASLRHLDLLSNQLREV------PKFLGNMSSLKRL 317
             +DL +N L   G+  LA     + SL  L+L  N L +          L    SL  L
Sbjct: 197 -VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 318 VFSYNELRGE----LSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356
             S N++  +    L+E +           SL  L L  N+  
Sbjct: 256 SLSCNDITDDGAKDLAEVLAE-------KESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.8 bits (142), Expect = 7e-09
 Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 22/288 (7%)

Query: 89  LRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQ 148
           L   S S + +L G+ N   L       L+L+    + S + E    L  L+ L L +  
Sbjct: 72  LDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE----LTNLTSLDLDNNN 127

Query: 149 FAGPIPHQLGNL-SKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQV 207
               IP  +G L S L+ LDL  N + S      L  L +L+ LDL+   LS       +
Sbjct: 128 IT-DIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPK---L 181

Query: 208 LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV 267
           LSNL +L NL L    +  +       I    +LE +DLSNN +   +   L N+ +   
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPP----EIELLSALEELDLSNNSIIELLSS-LSNLKNLSG 236

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE 327
              +L +N+L   +P + G++++L  LDL +NQ+  +   LG++++L+ L  S N L   
Sbjct: 237 L--ELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292

Query: 328 LSEFIQ-NVSSGSTKNSSLEWLYLAFNEITG-TIPDLGGFPSLQILSL 373
           L       +      N  L    L     +     ++           
Sbjct: 293 LPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEA 340

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 345 LEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
           L+ + L+ N I G IP  LG   SL++L L  N   G+I +S+GQL+ L +L L+GNSL 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 404 GVISEAL 410
           G +  AL
Sbjct: 504 GRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 11/106 (10%)

Query: 72  WRGVRCS--NKTGH--VLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGS 127
           W G  C   +  G   + GL L          L+G I   + KL+HL  ++LS N+  G+
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDN------QGLRGFIPNDISKLRHLQSINLSGNSIRGN 457

Query: 128 PIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL 173
            IP  +GS+  L  L LS   F G IP  LG L+ L++L+L  N+L
Sbjct: 458 -IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 357 GTIP-DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLS 415
           G IP D+     LQ ++L  N + G I  S+G ++ LE+L LS NS  G I E+L   L+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLT 490

Query: 416 SLDTLQLSDNSLT 428
           SL  L L+ NSL+
Sbjct: 491 SLRILNLNGNSLS 503

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 74/292 (25%), Positives = 106/292 (36%), Gaps = 69/292 (23%)

Query: 160 LSKLQVLDLRFNNLFSSGNLDWLS----YLSSLRYLDLADCKLSKF-SNWVQVLSNLRS- 213
           L  LQVL L  N L        L+       SL+ L L+  +  +       +L  L   
Sbjct: 22  LLCLQVLRLEGNTL-GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 214 --LTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
             L  L L    L P     L  +  S SL+ + L+NN L                    
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL-------------------- 120

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEF 331
                               R L LL+  L+++P       +L++LV   N L G   E 
Sbjct: 121 ------------------GDRGLRLLAKGLKDLP------PALEKLVLGRNRLEGASCEA 156

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITG-----TIPDLGGFPSLQILSLENNRLT----GTI 382
           +         N  L+ L LA N I           L    +L++L L NN LT      +
Sbjct: 157 LAKALR---ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213

Query: 383 SKSIGQLSKLELLLLSGNSLRGV----ISEALFSNLSSLDTLQLSDNSLTLK 430
           ++++  L  LE+L L  N+L       ++ AL S   SL TL LS N +T  
Sbjct: 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426
           +L+ L L NNRLT     +   L  L++L LSGN+L   IS   FS L SL +L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 427 L 427
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-07
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 25/112 (22%)

Query: 493 LNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISF 552
           L L N  ++G +P+            D+S  +          ++ S+NLS N   G+I  
Sbjct: 423 LGLDNQGLRGFIPN------------DISKLR----------HLQSINLSGNSIRGNIPP 460

Query: 553 -LCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSM 603
            L SI+S  L  LDLS N  +G +P+   Q  SL ILNL  NS  G +P ++
Sbjct: 461 SLGSITS--LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 6e-07
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSF 595
           +  L L      G I    S   HL + ++LS N + G +P       SL +L+L+ NSF
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQS-INLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 596 FGEIPDSMSFLRSIGSLSLYNNSLSGGLPS 625
            G IP+S+  L S+  L+L  NSLSG +P+
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGEL 328
           I+L  N + G+IP + G + SL  LDL  N     +P+ LG ++SL+ L  + N L G +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 36 LDEEKESLLAFKQGL-IDESGILSSWGREDEKRNCCKWRGVRCS 78
          L++++++LLAFK  L  D SG LSSW       + C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSS--SDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 16/97 (16%)

Query: 297 LSNQ-LREVPKFLGN-MSSLKRLV---FSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351
           L NQ LR    F+ N +S L+ L     S N +RG +   + +++S       LE L L+
Sbjct: 425 LDNQGLR---GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-------LEVLDLS 474

Query: 352 FNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIG 387
           +N   G+IP+ LG   SL+IL+L  N L+G +  ++G
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 1e-04
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 371 LSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSL 427
           L L+N  L G I   I +L  L+ + LSGNS+RG I  +   +++SL+ L LS NS 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695
           + L   GL G IP  I + L +L  ++L  N   GNIP  L  ++ +++LDLS N+ +G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 696 IPKCFHNFTAM 706
           IP+     T++
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY 221
            L+ LDL  N L    +      L +L+ LDL+   L+  S   +  S L SL +L L  
Sbjct: 1   NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSISP--EAFSGLPSLRSLDLSG 57

Query: 222 CDL 224
            +L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
           +L+ +DLSNN LT  I    F    NL   +DL  N L    P AF  + SLR LDL  N
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNL-KVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 300 QL 301
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 344 SLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           +L+ L L+ N +T  IPD    G P+L++L L  N LT    ++   L  L  L LSGN+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 402 L 402
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 138 KLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCK 197
            L  L LS+ +           L  L+VLDL  NNL +S + +  S L SLR LDL+   
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGNN 59

Query: 198 L 198
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 19/163 (11%)

Query: 107 SLLKLQH-LTYLDLSWNNFSGS---PIPEFIGSLGKLSELALSSAQFAGP-IPH---QLG 158
            L  L   L  L L  N   G+    + + + +   L EL L++       I      L 
Sbjct: 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190

Query: 159 NLSKLQVLDLRFNNLFSSGNLDW---LSYLSSLRYLDLADCKL-----SKFSNWVQVLSN 210
               L+VLDL  N L   G       L+ L SL  L+L D  L     +  ++   +LS 
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS--ALLSP 248

Query: 211 LRSLTNLYLGYCDLPPISTPSLLH-INYSKSLEVIDLSNNYLT 252
             SL  L L   D+       L   +   +SL  +DL  N   
Sbjct: 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1025
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
PLN03150	623	hypothetical protein; Provisional	99.56
PLN03150	623	hypothetical protein; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
KOG4341	483	consensus F-box protein containing LRR [General fu	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.68
KOG4341	483	consensus F-box protein containing LRR [General fu	97.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.36
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.21
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.78
KOG4308	478	consensus LRR-containing protein [Function unknown	93.76
KOG4308	478	consensus LRR-containing protein [Function unknown	93.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.53
smart00370	26	LRR Leucine-rich repeats, outliers.	87.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.01
smart00255	140	TIR Toll - interleukin 1 - resistance.	84.88
smart00370	26	LRR Leucine-rich repeats, outliers.	84.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.81

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-69  Score=695.26  Aligned_cols=583  Identities=36%  Similarity=0.543  Sum_probs=406.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCcccccccccCcCCCCCc
Q 047190           36 LDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLT  115 (1025)
Q Consensus        36 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~  115 (1025)
                      .++|++||++||+++.+|.+.+.+|+   ...+||.|.||+|++ .++|+.|||++      +.+.|.+++.+..+++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~------~~i~~~~~~~~~~l~~L~   96 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG------KNISGKISSAIFRLPYIQ   96 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC------CCccccCChHHhCCCCCC
Confidence            46899999999999988888889997   467899999999975 57999999998      678888888888888888


Q ss_pred             EEEccCCCCCCCCCccccc-CcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeecc
Q 047190          116 YLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA  194 (1025)
Q Consensus       116 ~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~  194 (1025)
                      +|+|++|.+.+. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|+|++|.+                     
T Consensus        97 ~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~---------------------  152 (968)
T PLN00113         97 TINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML---------------------  152 (968)
T ss_pred             EEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc---------------------
Confidence            888888888764 666544 777888888888877766663  3344455554444432                     


Q ss_pred             CCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCC
Q 047190          195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS  274 (1025)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~  274 (1025)
                          ++.  .+..++                          ++ ++|++|++++|.+.+.+|..+.++.+  |++|++++
T Consensus       153 ----~~~--~p~~~~--------------------------~l-~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~  197 (968)
T PLN00113        153 ----SGE--IPNDIG--------------------------SF-SSLKVLDLGGNVLVGKIPNSLTNLTS--LEFLTLAS  197 (968)
T ss_pred             ----ccc--CChHHh--------------------------cC-CCCCEEECccCcccccCChhhhhCcC--CCeeeccC
Confidence                110  001111                          11 44444444444444445555555555  55555555


Q ss_pred             CCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccc
Q 047190          275 NQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFN  353 (1025)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n  353 (1025)
                      |.+.+.+|..++.+++|++|++++|.+.+ +|..++++++|++|++++|.+.+.+|..+                     
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---------------------  256 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL---------------------  256 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH---------------------
Confidence            55555555555555555555555555443 44444444444444444444444444444                     


Q ss_pred             ccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcccccccc
Q 047190          354 EITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSH  433 (1025)
Q Consensus       354 ~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  433 (1025)
                               +.+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+    
T Consensus       257 ---------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~----  322 (968)
T PLN00113        257 ---------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTG----  322 (968)
T ss_pred             ---------hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCC----
Confidence                     44444444444444444444444444445555555555444444332 3344444444444433322    


Q ss_pred             CCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccC
Q 047190          434 DWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDS  513 (1025)
Q Consensus       434 ~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~  513 (1025)
                                          ..|.++..+++|+.|++++|.+.+..|..+..                            
T Consensus       323 --------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----------------------------  354 (968)
T PLN00113        323 --------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK----------------------------  354 (968)
T ss_pred             --------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhC----------------------------
Confidence                                22333333333333333333333333322211                            


Q ss_pred             CCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCC
Q 047190          514 YGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN  593 (1025)
Q Consensus       514 ~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  593 (1025)
                                                                  +++|+.|++++|.+++.+|..+..+++|+.|++++|
T Consensus       355 --------------------------------------------~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        355 --------------------------------------------HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             --------------------------------------------CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence                                                        244677777777777777777777777888888888


Q ss_pred             cccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCc
Q 047190          594 SFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP  673 (1025)
Q Consensus       594 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p  673 (1025)
                      ++.+.+|..+..+++|+.|++++|++++.+|..|..+++|+.|++++|+++|.+|..+. .+++|++|+|++|++.+.+|
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecC
Confidence            88777777777788888888888888877888888888888888888888887777766 58888888888888888777


Q ss_pred             ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccce
Q 047190          674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI  753 (1025)
Q Consensus       674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  753 (1025)
                      ..+ ..++|+.|++++|++++.+|..+.++++|                                               
T Consensus       470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-----------------------------------------------  501 (968)
T PLN00113        470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-----------------------------------------------  501 (968)
T ss_pred             ccc-ccccceEEECcCCccCCccChhhhhhhcc-----------------------------------------------
Confidence            655 45789999999999998888888776666                                               


Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|+|++|++++.+|..++++++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.||+++|
T Consensus       502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN  581 (968)
T ss_pred             CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCcCCCCcCCCCCCCCCC
Q 047190          834 NFSGKIPKGTQLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       834 ~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      +++|.+|..+++.++.+.+|.|||.+||.+
T Consensus       582 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        582 HLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-55  Score=565.51  Aligned_cols=516  Identities=32%  Similarity=0.483  Sum_probs=384.4

Q ss_pred             CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhh-CCCCCcEEEccCCCCCC-cchhhcCCCCccE
Q 047190          239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG-HMASLRHLDLLSNQLRE-VPKFLGNMSSLKR  316 (1025)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~  316 (1025)
                      .+++.|++++|.+.+.++..+..++.  |+.|+|++|.+.+.+|..+. .+++|++|+|++|++++ +|.  +.+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~--L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPY--IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCC--CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            34555666666655555555555555  66666666666555554433 55666666666666554 443  33555666


Q ss_pred             EEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCccee
Q 047190          317 LVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELL  395 (1025)
Q Consensus       317 L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  395 (1025)
                      |++++|.+.+.+|..+..++       +|++|+|++|.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFS-------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             EECcCCcccccCChHHhcCC-------CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            66666666655555555555       666666666665555554 5556666666666666666666666666666666


Q ss_pred             eccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCC
Q 047190          396 LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGI  475 (1025)
Q Consensus       396 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i  475 (1025)
                      ++++|.+.+.+|.. ++++++|++|++++|.+.+..+..+..+.+|+.|++++|.+.+.+|.++.++++|+.|++++|.+
T Consensus       218 ~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            66666666555543 55566666666666655555444555555555555555555555666666666666666666666


Q ss_pred             CCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCccccccccccc
Q 047190          476 SDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCS  555 (1025)
Q Consensus       476 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~  555 (1025)
                      .+..|.++..+. +|++|++++|.+.+.+|.                                              .. 
T Consensus       297 ~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~----------------------------------------------~~-  328 (968)
T PLN00113        297 SGEIPELVIQLQ-NLEILHLFSNNFTGKIPV----------------------------------------------AL-  328 (968)
T ss_pred             ccCCChhHcCCC-CCcEEECCCCccCCcCCh----------------------------------------------hH-
Confidence            666666655443 566666665555443321                                              11 


Q ss_pred             ccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccE
Q 047190          556 ISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTL  635 (1025)
Q Consensus       556 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  635 (1025)
                      ..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.|++++|++.+.+|..+..+++|+.
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~  408 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR  408 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence            12467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcc
Q 047190          636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS  715 (1025)
Q Consensus       636 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  715 (1025)
                      |++++|+++|.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++. +           
T Consensus       409 L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-~-----------  475 (968)
T PLN00113        409 VRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-K-----------  475 (968)
T ss_pred             EECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc-c-----------
Confidence            99999999999999887 7999999999999999999999999999999999999999988875531 2           


Q ss_pred             cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190          716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI  795 (1025)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  795 (1025)
                                                          .|+.||+++|++++.+|..+.+++.|+.|+|++|+++|.+|..+
T Consensus       476 ------------------------------------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  519 (968)
T PLN00113        476 ------------------------------------RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL  519 (968)
T ss_pred             ------------------------------------cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence                                                23889999999999999999999999999999999999999999


Q ss_pred             CCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCCCcCCCCcCCCCCCCCCC
Q 047190          796 GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       796 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      +.+++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus       520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999999999999999999975 334445555577887665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=325.34  Aligned_cols=395  Identities=23%  Similarity=0.238  Sum_probs=309.0

Q ss_pred             cccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEe
Q 047190          240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVF  319 (1025)
Q Consensus       240 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  319 (1025)
                      .-..||.+++.+....-..+.......-+.|++++|.+....+..|.++++|+++++..|.++.+|...+...+|+.|+|
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL  132 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence            44556666665543211111111111156799999999999999999999999999999999999987777788999999


Q ss_pred             ecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc-CCCCCCCCCcEEEeecccccCcccccccccCCcceeecc
Q 047190          320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI-PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS  398 (1025)
Q Consensus       320 s~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~-p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  398 (1025)
                      .+|.|+..-.+.+..++       .|+.|||+.|.|+... |.|..-.++++|+|++|+|+..-...|..+.+|..|.|+
T Consensus       133 ~~N~I~sv~se~L~~l~-------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALP-------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             eccccccccHHHHHhHh-------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            99999998888888888       9999999999998432 237777899999999999998888889999999999999


Q ss_pred             CcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCc
Q 047190          399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI  478 (1025)
Q Consensus       399 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~  478 (1025)
                      .|+++ .+|...|.++++|+.|+|..|.|.......|.++.+|+.|.+..|.+...-...|..+..++.|+|+.|++...
T Consensus       206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            99999 56666799999999999999999877677777888888888888888777777777788888888888887777


Q ss_pred             hhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccC
Q 047190          479 VPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS  558 (1025)
Q Consensus       479 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~  558 (1025)
                      ...|++++. .|+.|++|+|.|....++                                             .+.  .+
T Consensus       285 n~g~lfgLt-~L~~L~lS~NaI~rih~d---------------------------------------------~Ws--ft  316 (873)
T KOG4194|consen  285 NEGWLFGLT-SLEQLDLSYNAIQRIHID---------------------------------------------SWS--FT  316 (873)
T ss_pred             hcccccccc-hhhhhccchhhhheeecc---------------------------------------------hhh--hc
Confidence            777777766 577777777766522110                                             011  23


Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCC---ccccCCCCccE
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP---SFFMNGSQLTL  635 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~  635 (1025)
                      ++|++|+|++|+|+...+..|..+..|++|+|++|.+.......|..+++|+.|||++|.++..+.   ..|.++++|+.
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            668888888888887777788888888888888888877767777788888888888888876554   35777888888


Q ss_pred             EeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccc
Q 047190          636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNI  692 (1025)
Q Consensus       636 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (1025)
                      |++.+|++. .||...+.++++|++|+|.+|.|..+-|.+|..+ .|+.|.+..-.|
T Consensus       397 L~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  397 LRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             eeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            888888887 7887777788888888888888888888888877 777777655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=319.40  Aligned_cols=373  Identities=24%  Similarity=0.252  Sum_probs=272.6

Q ss_pred             CccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCC-CcEEEeecccccCcccccccccCC
Q 047190          313 SLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPS-LQILSLENNRLTGTISKSIGQLSK  391 (1025)
Q Consensus       313 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~  391 (1025)
                      .-+.|++++|.+....++.|.+++       +|+++++.+|.++ .+|.++.... |+.|+|.+|.|+..-.+.+..++.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~-------nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLP-------NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCC-------cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence            456789999999988888888888       9999999999888 7787666554 999999999998887888888889


Q ss_pred             cceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEcc
Q 047190          392 LELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVS  471 (1025)
Q Consensus       392 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls  471 (1025)
                      |+.|||+.|.++ .++...|..-.++++|+|++|.|+......|..+                        .+|..|.|+
T Consensus       151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l------------------------nsL~tlkLs  205 (873)
T KOG4194|consen  151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL------------------------NSLLTLKLS  205 (873)
T ss_pred             hhhhhhhhchhh-cccCCCCCCCCCceEEeecccccccccccccccc------------------------chheeeecc
Confidence            999999999888 5666567777788888888888776555555444                        445555555


Q ss_pred             CCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCccccccc
Q 047190          472 NAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSIS  551 (1025)
Q Consensus       472 ~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~  551 (1025)
                      +|.|+...+..|..+. +|+.|+|..|+|.-                                               +.
T Consensus       206 rNrittLp~r~Fk~L~-~L~~LdLnrN~iri-----------------------------------------------ve  237 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLP-KLESLDLNRNRIRI-----------------------------------------------VE  237 (873)
T ss_pred             cCcccccCHHHhhhcc-hhhhhhccccceee-----------------------------------------------eh
Confidence            5555555555544433 45555555555430                                               01


Q ss_pred             ccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCC
Q 047190          552 FLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS  631 (1025)
Q Consensus       552 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  631 (1025)
                      ...+.++++|+.|.|..|.+...-.++|..+.++++|+|+.|++...-..++.++++|+.|++++|.|..+-++.+.-++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            11122346788888888888877788888899999999999999887778888899999999999999988888899999


Q ss_pred             CccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccc
Q 047190          632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS  711 (1025)
Q Consensus       632 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~  711 (1025)
                      +|++|+|++|+|+ .+++.-+..+..|++|+|++|++...-...|..+++|+.|||++|.++..+.+.-           
T Consensus       318 kL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa-----------  385 (873)
T KOG4194|consen  318 KLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA-----------  385 (873)
T ss_pred             cceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-----------
Confidence            9999999999998 6666655578999999999999988777888999999999999999987765421           


Q ss_pred             cCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC
Q 047190          712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI  791 (1025)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i  791 (1025)
                                                                               ..|..|++|+.|+|.+|+|....
T Consensus       386 ---------------------------------------------------------~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  386 ---------------------------------------------------------VAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             ---------------------------------------------------------hhhccchhhhheeecCceeeecc
Confidence                                                                     12233445555555555555555


Q ss_pred             CCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccc
Q 047190          792 TPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS  836 (1025)
Q Consensus       792 p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~  836 (1025)
                      ..+|.++.+||.|||.+|.|-.+-|..|..+ .|+.|-+..-.|-
T Consensus       409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl  452 (873)
T KOG4194|consen  409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL  452 (873)
T ss_pred             hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence            5556666666666666666665556666555 5555554444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.2e-38  Score=323.75  Aligned_cols=454  Identities=27%  Similarity=0.358  Sum_probs=305.5

Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE  346 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~  346 (1025)
                      ++.+.+++|.+.. +.+.+.++..|.+|++++|++..+|+.++.+..++.+++++|++. .+|+.+..+.       +|.
T Consensus        47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~-------~l~  117 (565)
T KOG0472|consen   47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI-------SLV  117 (565)
T ss_pred             hhhhhhccCchhh-ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh-------hhh
Confidence            6777777777763 344566777778888888888888877888888888888888776 4555566666       778


Q ss_pred             EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190          347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS  426 (1025)
Q Consensus       347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (1025)
                      .++.++|.+....++++.+..|+.++..+|+++ ..|..++.+.+|..+++.+|.+.. .|+.... ++.|++||...|-
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccchhh
Confidence            888888887766666777888888888888877 567777777888888888888774 3443344 7788888877776


Q ss_pred             cccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCC
Q 047190          427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPD  506 (1025)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~  506 (1025)
                      +. ..|...+.+.+|+.|++..|++. .+| .|.++..|+++.++.|.|... |.......+++..              
T Consensus       195 L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~v--------------  256 (565)
T KOG0472|consen  195 LE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLV--------------  256 (565)
T ss_pred             hh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhh-HHHHhccccccee--------------
Confidence            54 33444555555666666666553 233 566666666666666666543 2222222223444              


Q ss_pred             ccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCC
Q 047190          507 LSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLA  586 (1025)
Q Consensus       507 ~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  586 (1025)
                                                      ||+..|+++.....+|.  +.+|++||+|+|.|+ ..|..++++ .|+
T Consensus       257 --------------------------------LDLRdNklke~Pde~cl--LrsL~rLDlSNN~is-~Lp~sLgnl-hL~  300 (565)
T KOG0472|consen  257 --------------------------------LDLRDNKLKEVPDEICL--LRSLERLDLSNNDIS-SLPYSLGNL-HLK  300 (565)
T ss_pred             --------------------------------eeccccccccCchHHHH--hhhhhhhcccCCccc-cCCcccccc-eee
Confidence                                            44444444444444443  366888888888888 566778888 788


Q ss_pred             EEEcCCCcccccC--------------------------------------Ccc---cccccCCCEEEcccCcccccCCc
Q 047190          587 ILNLANNSFFGEI--------------------------------------PDS---MSFLRSIGSLSLYNNSLSGGLPS  625 (1025)
Q Consensus       587 ~L~Ls~N~l~~~~--------------------------------------p~~---~~~l~~L~~L~L~~N~l~~~~p~  625 (1025)
                      .|-+.+|.+...-                                      +..   .....+.+.|++++-+++....+
T Consensus       301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE  380 (565)
T KOG0472|consen  301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE  380 (565)
T ss_pred             ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence            8888888763110                                      000   11133455566666666633333


Q ss_pred             cccCC--CCccEEeCCCCcCccccChhhhhcCCCCcE-EEeecCcCcccCcccccccCcccEEEccccccccccCccccC
Q 047190          626 FFMNG--SQLTLMDLGKNGLSGEIPTWIGESLPNLVV-LSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN  702 (1025)
Q Consensus       626 ~~~~l--~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  702 (1025)
                      .|..-  .-.+..+++.|++. ++|..+.. +..+.. +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|..++.
T Consensus       381 Vfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~  456 (565)
T KOG0472|consen  381 VFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS  456 (565)
T ss_pred             HHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence            33321  12566677777776 66666552 333333 34444444 366777777777777777777766 66666655


Q ss_pred             ccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEec
Q 047190          703 FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNL  782 (1025)
Q Consensus       703 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~L  782 (1025)
                      +..|                                               +.||+|.|+|. .+|+.+-.+..++.+-.
T Consensus       457 lv~L-----------------------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEtlla  488 (565)
T KOG0472|consen  457 LVRL-----------------------------------------------QTLNLSFNRFR-MLPECLYELQTLETLLA  488 (565)
T ss_pred             hhhh-----------------------------------------------heecccccccc-cchHHHhhHHHHHHHHh
Confidence            5444                                               88999999886 67888888888888888


Q ss_pred             cCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          783 SNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       783 s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      ++|++....|+.+++|.+|..|||.+|.+. .||..+++|++|++|++++|+|.  .|.
T Consensus       489 s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  489 SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            889998777777999999999999999998 67889999999999999999998  554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.1e-38  Score=322.52  Aligned_cols=483  Identities=25%  Similarity=0.331  Sum_probs=305.3

Q ss_pred             CCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCC
Q 047190          185 LSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS  264 (1025)
Q Consensus       185 l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~  264 (1025)
                      -..|+.|++++|.++...   ..+.++..|.+|++.+|.+...++   +++.. ..++.++.++|++. .+|+.+....+
T Consensus        44 qv~l~~lils~N~l~~l~---~dl~nL~~l~vl~~~~n~l~~lp~---aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~~  115 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEVLR---EDLKNLACLTVLNVHDNKLSQLPA---AIGEL-EALKSLNVSHNKLS-ELPEQIGSLIS  115 (565)
T ss_pred             hcchhhhhhccCchhhcc---HhhhcccceeEEEeccchhhhCCH---HHHHH-HHHHHhhcccchHh-hccHHHhhhhh
Confidence            345666666666665542   346677777777777777776665   34444 67778888888876 47888888888


Q ss_pred             CCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCC
Q 047190          265 NLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS  344 (1025)
Q Consensus       265 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~  344 (1025)
                        +.+++.++|.+. ..|+.++.+..|+.++..+|+++.+|+.+.++.+|..+++.+|.+....|+.+. +.       .
T Consensus       116 --l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-------~  184 (565)
T KOG0472|consen  116 --LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-------R  184 (565)
T ss_pred             --hhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-------H
Confidence              888999999887 567778888899999999999999999999999999999999998877776665 66       8


Q ss_pred             CcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCC
Q 047190          345 LEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD  424 (1025)
Q Consensus       345 L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  424 (1025)
                      |++||...|.++...|+++.+.+|+.|++..|++. .+| +|.+|..|++|+++.|++. .+|.+...+++++.+||+.+
T Consensus       185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             HHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence            99999999988866677999999999999999987 566 7889999999999999987 67777788999999999999


Q ss_pred             CccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCC
Q 047190          425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKL  504 (1025)
Q Consensus       425 n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  504 (1025)
                      |+++                         ..|+.+.-+++|..||+|+|.|++..+ .+..+  .|+.|.+.+|.+...-
T Consensus       262 Nklk-------------------------e~Pde~clLrsL~rLDlSNN~is~Lp~-sLgnl--hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  262 NKLK-------------------------EVPDEICLLRSLERLDLSNNDISSLPY-SLGNL--HLKFLALEGNPLRTIR  313 (565)
T ss_pred             cccc-------------------------cCchHHHHhhhhhhhcccCCccccCCc-ccccc--eeeehhhcCCchHHHH
Confidence            9887                         344445555555555555555554432 22222  3555555555443110


Q ss_pred             CCccc----cccCCCC----eeecccC----cCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccc
Q 047190          505 PDLSR----KFDSYGP----GIDVSSN----QFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS  572 (1025)
Q Consensus       505 p~~~~----~~l~~~~----~l~ls~n----~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~  572 (1025)
                      .++..    ..+++..    .-.++..    .-.+..+..                ..+.  .....+.+.|++++-+++
T Consensus       314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~----------------~~~~--~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE----------------SFPD--IYAIITTKILDVSDKQLT  375 (565)
T ss_pred             HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC----------------cccc--hhhhhhhhhhcccccccc
Confidence            00000    0000000    0000000    000000000                0000  001123455666666665


Q ss_pred             ccCCCcccCCCC---CCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccCh
Q 047190          573 GRLPDCWFQFDS---LAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT  649 (1025)
Q Consensus       573 ~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~  649 (1025)
                       .+|+....-..   ....+++.|++. .+|..+..+..+.+.-+..|+..+-+|..++.+++|..|+|++|.+. .+|.
T Consensus       376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~  452 (565)
T KOG0472|consen  376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE  452 (565)
T ss_pred             -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence             34433222222   555666666665 45555555555544433333333355566666666666666666665 6666


Q ss_pred             hhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccc
Q 047190          650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGM  729 (1025)
Q Consensus       650 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  729 (1025)
                      .++ .+..|+.|+++.|+|. .+|..+..+..++.+-.++|++....|+.++++.+|                       
T Consensus       453 e~~-~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL-----------------------  507 (565)
T KOG0472|consen  453 EMG-SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL-----------------------  507 (565)
T ss_pred             hhh-hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc-----------------------
Confidence            666 4666666666666665 556555555556666666666665555445444444                       


Q ss_pred             cceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccc
Q 047190          730 LMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLT  788 (1025)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  788 (1025)
                                              ++|||.+|.+. .||..++++++|++|+|++|.|+
T Consensus       508 ------------------------~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 ------------------------TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ------------------------ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                                    56666666664 56666777777777777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-34  Score=326.16  Aligned_cols=246  Identities=27%  Similarity=0.354  Sum_probs=190.1

Q ss_pred             CCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEE
Q 047190          533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL  612 (1025)
Q Consensus       533 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  612 (1025)
                      +.+++++++++|++++.....+  .+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. -+|.....+++|++|
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             cccceeeecchhhhhcchHHHH--hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            5678888888888887664433  3678888888888886 67777888888888888888887 556667778888888


Q ss_pred             EcccCcccccCCccccCCCC-ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190          613 SLYNNSLSGGLPSFFMNGSQ-LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       613 ~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      +|..|++....+..|..... |+.|+.+.|++. ..|..-.+..+.|+.|++.+|.++...-..+.+..+|++|+|++|+
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            88888887544444444444 778888888887 6675555567788889999999988888888888999999999998


Q ss_pred             cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190          692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI  771 (1025)
Q Consensus       692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~  771 (1025)
                      +......++.++..|                                               +.|+||+|+|+ .+|+.+
T Consensus       395 L~~fpas~~~kle~L-----------------------------------------------eeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEEL-----------------------------------------------EELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             cccCCHHHHhchHHh-----------------------------------------------HHHhcccchhh-hhhHHH
Confidence            884444556555554                                               77888999987 567888


Q ss_pred             hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCC-cCcccccCCCCCCEEECcCCc
Q 047190          772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG-GIPSSLSRLRLLSVMDLSYNN  834 (1025)
Q Consensus       772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~Ldls~N~  834 (1025)
                      .++..|++|..-+|++. ..| .+..+++|+.+|+|.|+|+. .+|..... +.|++||+++|.
T Consensus       427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            88899999988888887 445 78888899999999998884 34444443 788899999886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-34  Score=325.65  Aligned_cols=486  Identities=26%  Similarity=0.306  Sum_probs=334.3

Q ss_pred             EEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCC
Q 047190          244 IDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNE  323 (1025)
Q Consensus       244 L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  323 (1025)
                      +|++...+. .||..+.....  ++.|+++.|.+....-+...+.-+|+.|++++|.+...|..+..+.+|+.|+++.|.
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~--~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEA--LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCc-ccchhhccHHH--HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence            455555554 45665555555  677777777665433333444445777777777777777666666677777777666


Q ss_pred             CCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccc
Q 047190          324 LRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR  403 (1025)
Q Consensus       324 l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  403 (1025)
                      +... |.....+.       +|+++.|.+|.+......+..+.+|+.|+++.|++. .+|..+..++.++.+..++|...
T Consensus        80 i~~v-p~s~~~~~-------~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~  150 (1081)
T KOG0618|consen   80 IRSV-PSSCSNMR-------NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI  150 (1081)
T ss_pred             HhhC-chhhhhhh-------cchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence            5532 23333333       566666665555522223555555555555555554 44555555555555555555211


Q ss_pred             cccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhh
Q 047190          404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWF  483 (1025)
Q Consensus       404 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~  483 (1025)
                      ..     ++..                         .++.+++..+.+.+.++..+..+..  .||+..|.+....-   
T Consensus       151 ~~-----lg~~-------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl---  195 (1081)
T KOG0618|consen  151 QR-----LGQT-------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL---  195 (1081)
T ss_pred             hh-----hccc-------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh---
Confidence            11     1111                         1444445555555555555555555  67888877762211   


Q ss_pred             hhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccE
Q 047190          484 WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTY  563 (1025)
Q Consensus       484 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  563 (1025)
                       ....+|+.+....|+++.               +++           .-++++.|+.++|.++.......   ..+|++
T Consensus       196 -s~~~~l~~l~c~rn~ls~---------------l~~-----------~g~~l~~L~a~~n~l~~~~~~p~---p~nl~~  245 (1081)
T KOG0618|consen  196 -SNLANLEVLHCERNQLSE---------------LEI-----------SGPSLTALYADHNPLTTLDVHPV---PLNLQY  245 (1081)
T ss_pred             -hhccchhhhhhhhcccce---------------EEe-----------cCcchheeeeccCcceeeccccc---ccccee
Confidence             112357777777776651               111           13678888999998874333222   267999


Q ss_pred             EEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcC
Q 047190          564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL  643 (1025)
Q Consensus       564 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  643 (1025)
                      +++++|+++ .+|+.++.+.+|+.++..+|+++ .+|..+....+|+.|.+..|.+.. +|......++|++|+|..|+|
T Consensus       246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  246 LDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             eecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccc
Confidence            999999999 56799999999999999999996 778888889999999999999984 666778899999999999999


Q ss_pred             ccccChhhhhcCCC-CcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccc
Q 047190          644 SGEIPTWIGESLPN-LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYY  722 (1025)
Q Consensus       644 ~g~ip~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  722 (1025)
                      . .+|..++..+.. |+.|+.+.|++....-..=...+.|+.|.+.+|.++...-..+.++..                 
T Consensus       323 ~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h-----------------  384 (1081)
T KOG0618|consen  323 P-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH-----------------  384 (1081)
T ss_pred             c-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc-----------------
Confidence            8 888877655554 788888999887443222334678999999999999765544444444                 


Q ss_pred             ccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCcc
Q 047190          723 NLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLD  802 (1025)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~  802 (1025)
                                                    |++|+||+|+|.......+.++..|+.|+||+|+|+ .+|.++..+..|+
T Consensus       385 ------------------------------LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  385 ------------------------------LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH  433 (1081)
T ss_pred             ------------------------------eeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence                                          499999999998777788999999999999999999 6789999999999


Q ss_pred             EEeCCCCcCCCcCcccccCCCCCCEEECcCCccc-ccCCCCCCCCCcCCCCcCCCCCCC
Q 047190          803 FLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS-GKIPKGTQLQRFGASTYAGNPELC  860 (1025)
Q Consensus       803 ~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~-g~ip~~~~~~~~~~~~~~gN~~lc  860 (1025)
                      +|...+|++.. .| .+..++.|+.+|+|.|+|+ +.+|..-...++....+.||+++-
T Consensus       434 tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  434 TLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             HHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence            99999999984 56 8999999999999999997 445543222344555689998743

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.4e-32  Score=295.41  Aligned_cols=394  Identities=26%  Similarity=0.375  Sum_probs=251.5

Q ss_pred             CCCCcEEEccCCCCCC--cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCC
Q 047190          288 MASLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGF  365 (1025)
Q Consensus       288 l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l  365 (1025)
                      ++-.+-+|+++|.+++  +|.....+++++.|.|...++. .+|+.++.+.       +|++|.+++|++....-.+..+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-------kLEHLs~~HN~L~~vhGELs~L   77 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-------KLEHLSMAHNQLISVHGELSDL   77 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh-------hhhhhhhhhhhhHhhhhhhccc
Confidence            4456677888888875  7888888888888888777765 4667777766       7777777777776555556666


Q ss_pred             CCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCccccee
Q 047190          366 PSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI  444 (1025)
Q Consensus       366 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  444 (1025)
                      +.|+.+++.+|++.. -+|..+..+..|+.|||++|++. ..|                                     
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP-------------------------------------  119 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVP-------------------------------------  119 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcc-------------------------------------
Confidence            667777666666532 24555556666666666666655 233                                     


Q ss_pred             eccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCc
Q 047190          445 FLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ  524 (1025)
Q Consensus       445 ~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~  524 (1025)
                                  ..+...+++..|++|+|+|..++...|..+. .|-+||||+|.+..-.|                   
T Consensus       120 ------------~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrLe~LPP-------------------  167 (1255)
T KOG0444|consen  120 ------------TNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRLEMLPP-------------------  167 (1255)
T ss_pred             ------------hhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchhhhcCH-------------------
Confidence                        3333344444444455544444333333332 34444444444331111                   


Q ss_pred             CccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCccc-ccCCccc
Q 047190          525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFF-GEIPDSM  603 (1025)
Q Consensus       525 l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~  603 (1025)
                                                 ..-  .+..|+.|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++
T Consensus       168 ---------------------------Q~R--RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl  218 (1255)
T KOG0444|consen  168 ---------------------------QIR--RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL  218 (1255)
T ss_pred             ---------------------------HHH--HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence                                       000  1244666666666654333334445677778888776533 3567777


Q ss_pred             ccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCccc
Q 047190          604 SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ  683 (1025)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  683 (1025)
                      ..+.+|..+|++.|.+. ..|+.+-++.+|+.|+||+|+|+ .+..... ...+|+.|+|+.|+++ .+|..+++++.|+
T Consensus       219 d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            77788888888888877 67777777888888888888877 6665555 3677788888888877 6777888888888


Q ss_pred             EEEcccccccc-ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC
Q 047190          684 ILDLSLNNISG-IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK  762 (1025)
Q Consensus       684 ~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~  762 (1025)
                      .|.+.+|+++- -||+.++.+..|                                               +.+..++|+
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~L-----------------------------------------------evf~aanN~  327 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQL-----------------------------------------------EVFHAANNK  327 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhh-----------------------------------------------HHHHhhccc
Confidence            88888887763 367767666665                                               445566666


Q ss_pred             CCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC-----cccc
Q 047190          763 LGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN-----NFSG  837 (1025)
Q Consensus       763 l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N-----~l~g  837 (1025)
                      +. ..|+.++.+..|+.|.|++|++- ..|+.|.-|+.|+.|||..|.=--..|.--..-+.|+.-|+..-     ++.|
T Consensus       328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG  405 (1255)
T KOG0444|consen  328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAG  405 (1255)
T ss_pred             cc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhcc
Confidence            64 67888888888888888888887 57788888888888888888644333332222355665554432     3456


Q ss_pred             cCCC
Q 047190          838 KIPK  841 (1025)
Q Consensus       838 ~ip~  841 (1025)
                      ..|.
T Consensus       406 ~~pa  409 (1255)
T KOG0444|consen  406 QMPA  409 (1255)
T ss_pred             CCcc
Confidence            5553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-31  Score=289.75  Aligned_cols=393  Identities=23%  Similarity=0.342  Sum_probs=259.3

Q ss_pred             ccEEEcCCCCCC-CCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190          267 VDHIDLGSNQLH-GSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL  345 (1025)
Q Consensus       267 L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L  345 (1025)
                      ++-+|+++|.++ +..|.....+++++.|.|...++..+|+.++.+.+|++|.+++|++.... ..+..++       .|
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp-------~L   80 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELSDLP-------RL   80 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhccch-------hh
Confidence            556677777777 45788888888888888888888888888888888888888888876332 2244444       88


Q ss_pred             cEEEccccccc--cccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECC
Q 047190          346 EWLYLAFNEIT--GTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS  423 (1025)
Q Consensus       346 ~~L~L~~n~l~--~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  423 (1025)
                      +.+.+.+|++.  |..+++..+..|+.|||++|++. ..|..+...+++-.|+|++|+|. .||...|.+++.|-.|||+
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccc
Confidence            88888888774  45556888999999999999998 78888888899999999999998 6777788888888888888


Q ss_pred             CCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCC
Q 047190          424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK  503 (1025)
Q Consensus       424 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  503 (1025)
                      +|++.                         .+|..++.+..|++|++++|.+...--..+                    
T Consensus       159 ~NrLe-------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL--------------------  193 (1255)
T KOG0444|consen  159 NNRLE-------------------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL--------------------  193 (1255)
T ss_pred             cchhh-------------------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcC--------------------
Confidence            88775                         344445555555555555554432110000                    


Q ss_pred             CCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccc-ccCCCcccCC
Q 047190          504 LPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS-GRLPDCWFQF  582 (1025)
Q Consensus       504 ~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l  582 (1025)
                                                |                          .+++|++|.+++.+=+ ..+|.++..+
T Consensus       194 --------------------------P--------------------------smtsL~vLhms~TqRTl~N~Ptsld~l  221 (1255)
T KOG0444|consen  194 --------------------------P--------------------------SMTSLSVLHMSNTQRTLDNIPTSLDDL  221 (1255)
T ss_pred             --------------------------c--------------------------cchhhhhhhcccccchhhcCCCchhhh
Confidence                                      0                          0133444444443322 2355556666


Q ss_pred             CCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEE
Q 047190          583 DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLS  662 (1025)
Q Consensus       583 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~  662 (1025)
                      .+|..+|+|.|++. .+|+++-.+++|+.|+|++|+|+. +........+|++|++|.|+++ .+|..+. .+++|+.|+
T Consensus       222 ~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy  297 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLY  297 (1255)
T ss_pred             hhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHH
Confidence            66666666666665 556666666666666666666652 2233344455666666666666 6666665 466666666


Q ss_pred             eecCcCc-ccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCC
Q 047190          663 LRSNKFH-GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG  741 (1025)
Q Consensus       663 L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (1025)
                      +.+|+++ .-+|..++++.+|+.+..++|.+. ..|..++.+..|                                   
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL-----------------------------------  341 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL-----------------------------------  341 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH-----------------------------------
Confidence            6666654 235666666666666666666665 566666655555                                   


Q ss_pred             ccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCC-----cCCCcCc
Q 047190          742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN-----HFFGGIP  816 (1025)
Q Consensus       742 ~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N-----~l~g~ip  816 (1025)
                                  +.|.|++|++. ..|+.|.-++.|.+|||..|.=--..|.-=..-+.|+.-++..-     +|-|..|
T Consensus       342 ------------~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~p  408 (1255)
T KOG0444|consen  342 ------------QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMP  408 (1255)
T ss_pred             ------------HHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCc
Confidence                        45566666664 46888888999999999999754444432222256666554432     4557666


Q ss_pred             ccc
Q 047190          817 SSL  819 (1025)
Q Consensus       817 ~~l  819 (1025)
                      .+.
T Consensus       409 asv  411 (1255)
T KOG0444|consen  409 ASV  411 (1255)
T ss_pred             ccc
Confidence            553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=6.4e-24  Score=220.45  Aligned_cols=288  Identities=23%  Similarity=0.236  Sum_probs=179.6

Q ss_pred             CCcEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccc-cccccccCC--CCCC
Q 047190          290 SLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAF-NEITGTIPD--LGGF  365 (1025)
Q Consensus       290 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~-n~l~~~~p~--l~~l  365 (1025)
                      .-+.++|..|+|+.+| ..|+.+++|+.|||++|.|+.+.|..|..+.       +|.+|-+.+ |+|+ .+|.  |+++
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-------~l~~Lvlyg~NkI~-~l~k~~F~gL  139 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-------SLLSLVLYGNNKIT-DLPKGAFGGL  139 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-------hhhHHHhhcCCchh-hhhhhHhhhH
Confidence            5667788888888866 5677788888888888888877777777777       666665555 6666 3443  7777


Q ss_pred             CCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceee
Q 047190          366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIF  445 (1025)
Q Consensus       366 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  445 (1025)
                      .+|+.|.+.-|++.....+.|..+++|..|.+.+|.+. .++...|..+.+++.+.+..|++.....-.|..-       
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~-------  211 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD-------  211 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhh-------
Confidence            77777777777777666667777777777777777776 4555556677777777776666432211111000       


Q ss_pred             ccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcC
Q 047190          446 LGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF  525 (1025)
Q Consensus       446 L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l  525 (1025)
                           .....|..++.........+.+..+..+.+..|....                                      
T Consensus       212 -----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~--------------------------------------  248 (498)
T KOG4237|consen  212 -----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL--------------------------------------  248 (498)
T ss_pred             -----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhH--------------------------------------
Confidence                 0000111111111111111222222222222221110                                      


Q ss_pred             ccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccc
Q 047190          526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSF  605 (1025)
Q Consensus       526 ~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  605 (1025)
                              .++..-..+.+...+..|..|+..++.|+.|+|++|+++++-+.+|.+...+++|.|..|++.......|.+
T Consensus       249 --------esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~  320 (498)
T KOG4237|consen  249 --------ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQG  320 (498)
T ss_pred             --------HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhc
Confidence                    001111112222333445566667788888888888888888888888888888888888887666677788


Q ss_pred             ccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCc
Q 047190          606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS  644 (1025)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  644 (1025)
                      +..|++|+|++|+|+...|.+|..+.+|.+|+|-.|.+.
T Consensus       321 ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  321 LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            888888888888888888888888888888888777665

>PLN03210 Resistant to P

Probab=99.86  E-value=1e-20  Score=243.00  Aligned_cols=324  Identities=24%  Similarity=0.291  Sum_probs=201.4

Q ss_pred             chhhhhCCC-CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc
Q 047190          281 IPLAFGHMA-SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI  359 (1025)
Q Consensus       281 ~p~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~  359 (1025)
                      +|..|..++ +|+.|++.++.++.+|..+ ...+|+.|++.+|.+.. +++.+..++       +|+.|+|+++...+.+
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~-------~Lk~L~Ls~~~~l~~i  650 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLT-------GLRNIDLRGSKNLKEI  650 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-cccccccCC-------CCCEEECCCCCCcCcC
Confidence            344444432 3566666665555555554 34556666666555442 222233333       5666666555444455


Q ss_pred             CCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCc
Q 047190          360 PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPF  439 (1025)
Q Consensus       360 p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  439 (1025)
                      |.+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..  .++++|+.|++++|              
T Consensus       651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc--------------  714 (1153)
T PLN03210        651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGC--------------  714 (1153)
T ss_pred             CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCC--------------
Confidence            55555556666666655544455555555555666666555433344432  14455555555544              


Q ss_pred             ccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeee
Q 047190          440 QLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID  519 (1025)
Q Consensus       440 ~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~  519 (1025)
                                ...+.+|..   ..+|+.|++++|.+... |..+ . .++|++|++.++....                 
T Consensus       715 ----------~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~-~-l~~L~~L~l~~~~~~~-----------------  761 (1153)
T PLN03210        715 ----------SRLKSFPDI---STNISWLDLDETAIEEF-PSNL-R-LENLDELILCEMKSEK-----------------  761 (1153)
T ss_pred             ----------CCccccccc---cCCcCeeecCCCccccc-cccc-c-ccccccccccccchhh-----------------
Confidence                      433334432   34567777777776543 3222 1 2356666665433210                 


Q ss_pred             cccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccC
Q 047190          520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEI  599 (1025)
Q Consensus       520 ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  599 (1025)
                           +.+.+..                 ..+ ......++|+.|++++|...+.+|..++++++|+.|++++|...+.+
T Consensus       762 -----l~~~~~~-----------------l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        762 -----LWERVQP-----------------LTP-LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             -----ccccccc-----------------cch-hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence                 0000000                 000 00111367899999999888889999999999999999998766677


Q ss_pred             CcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccccc
Q 047190          600 PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYL  679 (1025)
Q Consensus       600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  679 (1025)
                      |..+ .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++. .+++|++|+|++|+-...+|..+..+
T Consensus       819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        819 PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             CCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccc
Confidence            8776 6899999999998776666654   368999999999998 8999987 79999999999965555688888999


Q ss_pred             CcccEEEccccc
Q 047190          680 SHIQILDLSLNN  691 (1025)
Q Consensus       680 ~~L~~L~Ls~N~  691 (1025)
                      ++|+.+++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            999999999885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.3e-21  Score=228.73  Aligned_cols=261  Identities=26%  Similarity=0.328  Sum_probs=168.0

Q ss_pred             ccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCC
Q 047190          465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKN  544 (1025)
Q Consensus       465 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n  544 (1025)
                      -..|++++++++.+ |..+.   .+|+.|++++|+++.                          +|..+++|++|++++|
T Consensus       203 ~~~LdLs~~~LtsL-P~~l~---~~L~~L~L~~N~Lt~--------------------------LP~lp~~Lk~LdLs~N  252 (788)
T PRK15387        203 NAVLNVGESGLTTL-PDCLP---AHITTLVIPDNNLTS--------------------------LPALPPELRTLEVSGN  252 (788)
T ss_pred             CcEEEcCCCCCCcC-Ccchh---cCCCEEEccCCcCCC--------------------------CCCCCCCCcEEEecCC
Confidence            34566666666643 33332   246666666665541                          3334566777777777


Q ss_pred             cccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCC
Q 047190          545 KFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP  624 (1025)
Q Consensus       545 ~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  624 (1025)
                      +++.... .    .++|+.|++++|.++ .+|..   ..+|+.|++++|+++. +|..   .++|+.|++++|++++ +|
T Consensus       253 ~LtsLP~-l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp  318 (788)
T PRK15387        253 QLTSLPV-L----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP  318 (788)
T ss_pred             ccCcccC-c----ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CC
Confidence            6664321 1    245777777777776 34432   2457777777777763 3432   3567777777777775 33


Q ss_pred             ccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcc
Q 047190          625 SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFT  704 (1025)
Q Consensus       625 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  704 (1025)
                      ...   .+|+.|++++|+++ .+|..    ..+|++|+|++|+|++ +|..   .++|+.|++++|.+++ +|...    
T Consensus       319 ~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~----  381 (788)
T PRK15387        319 ALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP----  381 (788)
T ss_pred             CCc---ccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc----
Confidence            322   35667777777776 56641    3467777777777774 4432   2456777777777773 44321    


Q ss_pred             ccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccC
Q 047190          705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSN  784 (1025)
Q Consensus       705 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~  784 (1025)
                                                                    ..|+.|+|++|+|++ +|..   .+.|+.|++++
T Consensus       382 ----------------------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~  411 (788)
T PRK15387        382 ----------------------------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSG  411 (788)
T ss_pred             ----------------------------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccC
Confidence                                                          123678888888875 4433   35788888888


Q ss_pred             ccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          785 NNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       785 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      |+|++ +|...   .+|+.|+|++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus       412 N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        412 NRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            88885 56533   46778888998888 6788888888888999999999888775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=3.8e-21  Score=228.22  Aligned_cols=246  Identities=24%  Similarity=0.342  Sum_probs=172.9

Q ss_pred             cccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccC
Q 047190          464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK  543 (1025)
Q Consensus       464 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~  543 (1025)
                      +++.|++++|+++.+. .    ..++|++|++++|+++.                          +|..+++|+.|++++
T Consensus       223 ~L~~L~L~~N~Lt~LP-~----lp~~Lk~LdLs~N~Lts--------------------------LP~lp~sL~~L~Ls~  271 (788)
T PRK15387        223 HITTLVIPDNNLTSLP-A----LPPELRTLEVSGNQLTS--------------------------LPVLPPGLLELSIFS  271 (788)
T ss_pred             CCCEEEccCCcCCCCC-C----CCCCCcEEEecCCccCc--------------------------ccCcccccceeeccC
Confidence            4566666666666532 1    23467777777776652                          223345667777777


Q ss_pred             CcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccC
Q 047190          544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL  623 (1025)
Q Consensus       544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  623 (1025)
                      |.++.... .    .+.|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +
T Consensus       272 N~L~~Lp~-l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        272 NPLTHLPA-L----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             Cchhhhhh-c----hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            76654322 1    145778888888887 34542   4678888888888875 3432   2467788888888874 4


Q ss_pred             CccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCc
Q 047190          624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF  703 (1025)
Q Consensus       624 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  703 (1025)
                      |..   ..+|+.|+|++|+|+ .+|..    .++|+.|++++|++++ +|..   ..+|+.|++++|+|++ +|...   
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---  401 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---  401 (788)
T ss_pred             ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---
Confidence            432   247889999999998 67752    4578888999998884 5643   3578899999999884 45321   


Q ss_pred             cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190          704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS  783 (1025)
Q Consensus       704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls  783 (1025)
                      +                                               .|+.||+|+|++++ +|...   ..|+.|+++
T Consensus       402 s-----------------------------------------------~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls  430 (788)
T PRK15387        402 S-----------------------------------------------ELKELMVSGNRLTS-LPMLP---SGLLSLSVY  430 (788)
T ss_pred             c-----------------------------------------------CCCEEEccCCcCCC-CCcch---hhhhhhhhc
Confidence            1                                               23778999999986 56543   467889999


Q ss_pred             CccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCC
Q 047190          784 NNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRL  822 (1025)
Q Consensus       784 ~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  822 (1025)
                      +|+|+ .+|..++++++|+.|+|++|+|+|.+|..+..+
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            99998 689999999999999999999999999887554

>PLN03210 Resistant to P

Probab=99.85  E-value=4.1e-20  Score=237.44  Aligned_cols=158  Identities=24%  Similarity=0.263  Sum_probs=77.9

Q ss_pred             hhhcCCCCccEEEeecCCC------CCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeeccccc
Q 047190          306 KFLGNMSSLKRLVFSYNEL------RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT  379 (1025)
Q Consensus       306 ~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~  379 (1025)
                      ..|.++++|+.|.+..+..      ...+|+.+..++.      +|+.|.+.++.+. .+|....+.+|++|++.+|++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~------~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP------KLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCc------ccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc
Confidence            3455566666666654432      1122333333321      4555555555544 3333223455555555555554


Q ss_pred             CcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhh
Q 047190          380 GTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL  459 (1025)
Q Consensus       380 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l  459 (1025)
                       .++..+..+++|+.|+|+++...+.+|.  +..+++|++|                        ++.+|.....+|..+
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L------------------------~L~~c~~L~~lp~si  677 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETL------------------------KLSDCSSLVELPSSI  677 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEE------------------------EecCCCCccccchhh
Confidence             3444445555555555555443333332  3444444444                        444444444566667


Q ss_pred             hcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCcc
Q 047190          460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE  499 (1025)
Q Consensus       460 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~  499 (1025)
                      ..+++|+.|++++|.....+|..+  ...+|++|++++|.
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS  715 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence            777777777777764433344332  12245555555553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=2.3e-22  Score=209.01  Aligned_cols=255  Identities=24%  Similarity=0.282  Sum_probs=205.2

Q ss_pred             CCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccC-CCCCCcc-hhhcCCCCcc
Q 047190          238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS-NQLREVP-KFLGNMSSLK  315 (1025)
Q Consensus       238 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~lp-~~l~~l~~L~  315 (1025)
                      ++.-..++|..|.|+..-+..|..+.+  |+.|||++|+|+.+.|.+|.++.+|..|-+.+ |+|+.+| ..|+++..|+
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~--LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHR--LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhh--hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            367788889999988766667778888  99999999999988999999999888777766 8899888 5788899999


Q ss_pred             EEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccC-CCCCCCCCcEEEeeccccc------------Ccc
Q 047190          316 RLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLT------------GTI  382 (1025)
Q Consensus       316 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p-~l~~l~~L~~L~L~~n~l~------------~~~  382 (1025)
                      .|.+.-|++.....+.+..++       +|..|.+.+|.+...-. .+..+.+++.+.+..|.+-            ...
T Consensus       144 rLllNan~i~Cir~~al~dL~-------~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLP-------SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhh-------hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            999999999888888888888       89999999998873333 2777888888888777621            111


Q ss_pred             cccccccCC----------------------ccee---eccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCC
Q 047190          383 SKSIGQLSK----------------------LELL---LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTP  437 (1025)
Q Consensus       383 p~~l~~l~~----------------------L~~L---~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  437 (1025)
                      |..++....                      ++.+   ..+.+...+.-|...|+.+++|+.|++++|+++.+.+..|..
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence            222221111                      1111   223333445667778999999999999999999999999999


Q ss_pred             CcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCC
Q 047190          438 PFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG  502 (1025)
Q Consensus       438 ~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~  502 (1025)
                      ...+++|+|..|++...-...|.++..|+.|+|.+|+|+...|..|.... .|..|++-.|.+..
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFNC  360 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc-eeeeeehccCcccC
Confidence            99999999999999888888999999999999999999999999998877 79999999998764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=7.1e-19  Score=210.71  Aligned_cols=229  Identities=23%  Similarity=0.411  Sum_probs=154.8

Q ss_pred             CCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCE
Q 047190          532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGS  611 (1025)
Q Consensus       532 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  611 (1025)
                      .++.++.|++++|+++......    .++|+.|++++|+++ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~  266 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPENL----QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQS  266 (754)
T ss_pred             cccCCcEEEecCCCCCcCChhh----ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCE
Confidence            3456777777777777543322    246788888888877 4565443  46888888888877 5565553  57888


Q ss_pred             EEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190          612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      |++++|+++. +|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++. +|..+.  ++|+.|++++|.
T Consensus       267 L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~  336 (754)
T PRK15370        267 LDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENA  336 (754)
T ss_pred             EECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCc
Confidence            8888888873 555443  47888888888887 5665442   467788888888874 454432  578888888888


Q ss_pred             cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190          692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI  771 (1025)
Q Consensus       692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~  771 (1025)
                      +++ +|..+.  +                                               .|+.|+|++|+|+. +|..+
T Consensus       337 Lt~-LP~~l~--~-----------------------------------------------sL~~L~Ls~N~L~~-LP~~l  365 (754)
T PRK15370        337 LTS-LPASLP--P-----------------------------------------------ELQVLDVSKNQITV-LPETL  365 (754)
T ss_pred             ccc-CChhhc--C-----------------------------------------------cccEEECCCCCCCc-CChhh
Confidence            774 454321  1                                               23778888888873 56555


Q ss_pred             hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccccc----CCCCCCEEECcCCcccc
Q 047190          772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLS----RLRLLSVMDLSYNNFSG  837 (1025)
Q Consensus       772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~----~l~~L~~Ldls~N~l~g  837 (1025)
                      .  +.|+.|+|++|+|++ +|..+.  .+|+.||+++|+|+ .+|..+.    .++.+..+++.+|+++.
T Consensus       366 p--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        366 P--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             c--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            3  578888888888884 555554  36888888888887 3454443    34777888888888863

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.2e-18  Score=208.65  Aligned_cols=266  Identities=26%  Similarity=0.421  Sum_probs=185.6

Q ss_pred             cccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccC
Q 047190          464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK  543 (1025)
Q Consensus       464 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~  543 (1025)
                      +...|++++++++.+ |..+   .+.++.|++++|+++. +|.                        ..+.+|+.|++++
T Consensus       179 ~~~~L~L~~~~LtsL-P~~I---p~~L~~L~Ls~N~Lts-LP~------------------------~l~~nL~~L~Ls~  229 (754)
T PRK15370        179 NKTELRLKILGLTTI-PACI---PEQITTLILDNNELKS-LPE------------------------NLQGNIKTLYANS  229 (754)
T ss_pred             CceEEEeCCCCcCcC-Cccc---ccCCcEEEecCCCCCc-CCh------------------------hhccCCCEEECCC
Confidence            456788888877764 3322   2367777887777762 221                        1235788888888


Q ss_pred             CcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccC
Q 047190          544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL  623 (1025)
Q Consensus       544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  623 (1025)
                      |+++......    ..+|+.|+|++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  .+|+.|++++|++++ +
T Consensus       230 N~LtsLP~~l----~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-L  298 (754)
T PRK15370        230 NQLTSIPATL----PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-L  298 (754)
T ss_pred             CccccCChhh----hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-C
Confidence            8877543222    246888999999888 5676654  57899999999888 4666554  589999999998885 4


Q ss_pred             CccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCc
Q 047190          624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF  703 (1025)
Q Consensus       624 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  703 (1025)
                      |..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  
T Consensus       299 P~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--  366 (754)
T PRK15370        299 PAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--  366 (754)
T ss_pred             cccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence            54443  47888999999998 677654   3688999999999885 666554  68999999999887 4554331  


Q ss_pred             cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190          704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS  783 (1025)
Q Consensus       704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls  783 (1025)
                      +                                               .|+.|+|++|+|+. +|..+.  ..|+.|+++
T Consensus       367 ~-----------------------------------------------~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        367 P-----------------------------------------------TITTLDVSRNALTN-LPENLP--AALQIMQAS  396 (754)
T ss_pred             C-----------------------------------------------CcCEEECCCCcCCC-CCHhHH--HHHHHHhhc
Confidence            1                                               23789999999984 555554  368889999


Q ss_pred             CccccccCCCC----CCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccC
Q 047190          784 NNNLTGQITPR----IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKI  839 (1025)
Q Consensus       784 ~N~l~g~ip~~----~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i  839 (1025)
                      +|+|+ .+|..    ++.++.+..|+|.+|.++.   ..+.   .|+.| ++.+.+.|++
T Consensus       397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~---~L~~L-l~s~~~~gp~  448 (754)
T PRK15370        397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQ---NMQRL-MSSVGYQGPR  448 (754)
T ss_pred             cCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHH---HHHHh-hhcccccCCc
Confidence            99998 44544    3445788999999999883   3333   34444 4556666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=5.4e-18  Score=189.58  Aligned_cols=82  Identities=24%  Similarity=0.323  Sum_probs=46.6

Q ss_pred             eEEEcccCCCCCcChhhHhh-----cccCCeEeccCcccc----ccCCCCCCCCCCccEEeCCCCcCCCc----Cccccc
Q 047190          754 KIIDLSSNKLGGKVLEEIMD-----LVGLVALNLSNNNLT----GQITPRIGQLKSLDFLDLSRNHFFGG----IPSSLS  820 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~-----l~~L~~L~Ls~N~l~----g~ip~~~~~l~~L~~LdLs~N~l~g~----ip~~l~  820 (1025)
                      +.||+++|.+++.....+..     .+.|+.|++++|.++    ..+...+..+++|+++|+++|.++..    ....+.
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~  303 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL  303 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence            55666666665533333322     256677777777665    12233444556777777777777744    333333


Q ss_pred             CC-CCCCEEECcCCcc
Q 047190          821 RL-RLLSVMDLSYNNF  835 (1025)
Q Consensus       821 ~l-~~L~~Ldls~N~l  835 (1025)
                      .. +.|+.+|+..|++
T Consensus       304 ~~~~~~~~~~~~~~~~  319 (319)
T cd00116         304 EPGNELESLWVKDDSF  319 (319)
T ss_pred             hcCCchhhcccCCCCC
Confidence            34 5677777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=7.6e-18  Score=188.39  Aligned_cols=236  Identities=25%  Similarity=0.245  Sum_probs=166.6

Q ss_pred             CCcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCcccc------cCCcccccccCCCEEEcccCcccccCCccc
Q 047190          558 SHLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFG------EIPDSMSFLRSIGSLSLYNNSLSGGLPSFF  627 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  627 (1025)
                      ...|+.|+++++.++..    ++..+...++|+.|+++++.+.+      .++..+..+++|+.|++++|.+.+..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            35578888888887533    44556667778888888887762      233456667788888888888876666655


Q ss_pred             cCCCC---ccEEeCCCCcCccc----cChhhhhcC-CCCcEEEeecCcCccc----CcccccccCcccEEEccccccccc
Q 047190          628 MNGSQ---LTLMDLGKNGLSGE----IPTWIGESL-PNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISGI  695 (1025)
Q Consensus       628 ~~l~~---L~~L~Ls~N~l~g~----ip~~~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  695 (1025)
                      ..+..   |+.|++++|++++.    +...+. .+ ++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            55555   99999999988732    333344 35 7889999999998843    344566778899999999988852


Q ss_pred             cCcccc-CccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcC----hhh
Q 047190          696 IPKCFH-NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKV----LEE  770 (1025)
Q Consensus       696 ~p~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~i----p~~  770 (1025)
                      ....+. .+.                                            ..+.|+.|+|++|.+++..    +..
T Consensus       181 ~~~~l~~~l~--------------------------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         181 GIRALAEGLK--------------------------------------------ANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             HHHHHHHHHH--------------------------------------------hCCCCCEEeccCCccChHHHHHHHHH
Confidence            111110 000                                            1134488999999988543    445


Q ss_pred             HhhcccCCeEeccCccccccCCCCCC-----CCCCccEEeCCCCcCC----CcCcccccCCCCCCEEECcCCccccc
Q 047190          771 IMDLVGLVALNLSNNNLTGQITPRIG-----QLKSLDFLDLSRNHFF----GGIPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       771 ~~~l~~L~~L~Ls~N~l~g~ip~~~~-----~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      +..++.|++|++++|.+++.....+.     ..+.|++|++++|.++    ..++..+..++.|+++|+++|+++..
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            56778899999999999864333332     2479999999999998    33456677778999999999999854

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=3.9e-17  Score=150.92  Aligned_cols=126  Identities=33%  Similarity=0.406  Sum_probs=54.6

Q ss_pred             cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG  639 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (1025)
                      ..+.|.||+|+++ .+|..+..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. ..|..|+.++.|++|||.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            3444444555444 33444444444444444444444 33444444444444444444443 344444444444444444


Q ss_pred             CCcCcc-ccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccc
Q 047190          640 KNGLSG-EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN  690 (1025)
Q Consensus       640 ~N~l~g-~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  690 (1025)
                      +|.+.. .+|..++ .++.|+.|+|++|.+. .+|..++++++||.|.+++|
T Consensus       111 ynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  111 YNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             ccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence            444431 2333333 2344444444444443 33333444444444443333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=5.4e-17  Score=150.02  Aligned_cols=163  Identities=27%  Similarity=0.469  Sum_probs=102.4

Q ss_pred             cccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccE
Q 047190          605 FLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI  684 (1025)
Q Consensus       605 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  684 (1025)
                      .+...+.|.|++|+++ .+|..+..+.+|+.|++.+|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4566667777777777 34555677777777777777776 6777776 5777777777777776 56777777777777


Q ss_pred             EEcccccccc-ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCC
Q 047190          685 LDLSLNNISG-IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL  763 (1025)
Q Consensus       685 L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l  763 (1025)
                      |||..|+++. .+|..|..++.|                                               +.|.|+.|.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tl-----------------------------------------------ralyl~dndf  139 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTL-----------------------------------------------RALYLGDNDF  139 (264)
T ss_pred             hhccccccccccCCcchhHHHHH-----------------------------------------------HHHHhcCCCc
Confidence            7777777663 334433333322                                               4445555555


Q ss_pred             CCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccC
Q 047190          764 GGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR  821 (1025)
Q Consensus       764 ~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  821 (1025)
                      . .+|..++++++|+.|.+..|.+- ..|..+|.+++|+.|.+.+|+++ .+|..+++
T Consensus       140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            4 45556666666666666666665 45666666666666666666666 34444443

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=6.8e-15  Score=176.50  Aligned_cols=117  Identities=36%  Similarity=0.624  Sum_probs=105.5

Q ss_pred             eeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190          753 IKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       753 l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~  832 (1025)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.||+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCC--CCCCcCCCCcCCCCCCCCCCCCCCCC
Q 047190          833 NNFSGKIPKGT--QLQRFGASTYAGNPELCGLPLPNKCL  869 (1025)
Q Consensus       833 N~l~g~ip~~~--~~~~~~~~~~~gN~~lcg~~~~~~C~  869 (1025)
                      |+++|.+|..-  .+.......+.||+++||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999752  12223345689999999987666773

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=1.7e-13  Score=164.48  Aligned_cols=151  Identities=32%  Similarity=0.474  Sum_probs=122.6

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC----cccceEecC--CC--CcEEEEECCCCCCCCCCcccccc
Q 047190           33 ISCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCC----KWRGVRCSN--KT--GHVLGLDLRASSDSPVDALKGTI  104 (1025)
Q Consensus        33 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c----~w~gv~C~~--~~--~~v~~L~L~~~~~~~~~~l~g~l  104 (1025)
                      ..+.++|.+||+++|+++.++..  .+|.    +..||    .|.||.|+.  ..  .+|+.|+|++      +.+.|.+
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~------n~L~g~i  434 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN------QGLRGFI  434 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC------CCccccC
Confidence            35678899999999999976542  4896    34443    799999953  22  2599999998      7899999


Q ss_pred             cccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhccc
Q 047190          105 NPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY  184 (1025)
Q Consensus       105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~  184 (1025)
                      |..++++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..+++|++|++|+|++|++ ....+..+..
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP~~l~~  512 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVPAALGG  512 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCChHHhh
Confidence            99999999999999999999986 999999999999999999999999999999999999999999986 3334444443


Q ss_pred             -CCCCCeeeccCCc
Q 047190          185 -LSSLRYLDLADCK  197 (1025)
Q Consensus       185 -l~~L~~L~L~~n~  197 (1025)
                       ..++..+++.+|.
T Consensus       513 ~~~~~~~l~~~~N~  526 (623)
T PLN03150        513 RLLHRASFNFTDNA  526 (623)
T ss_pred             ccccCceEEecCCc
Confidence             2345566666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=4.5e-13  Score=146.50  Aligned_cols=125  Identities=33%  Similarity=0.489  Sum_probs=67.6

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      ...|++.|++. ++|..++.+..|+.+.|++|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            44555555555 45555555555555555555554 44555555555555555555555 3444444443 555555555


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                      +++ .+|+.++ .++.|..|+.+.|.+. .+|..++++.+|+.|.++.|++.
T Consensus       154 kl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  154 KLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             ccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence            555 5555555 4555555555555554 44555555555555555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=1.5e-12  Score=142.43  Aligned_cols=194  Identities=27%  Similarity=0.425  Sum_probs=147.9

Q ss_pred             EEEccCccccccC-CCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          563 YLDLSNNLLSGRL-PDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       563 ~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      .|.|++-+++... +.+=..+.--...||+.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|+.|||+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence            3445555554221 111133455567899999998 78899999999999999999998 68899999999999999999


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccc
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYY  721 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  721 (1025)
                      +++ .+|..++ .+ -|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.++               
T Consensus       132 qlS-~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------  191 (722)
T KOG0532|consen  132 QLS-HLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------  191 (722)
T ss_pred             hhh-cCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH---------------
Confidence            999 9999998 35 4999999999998 78889999999999999999998 778888888777               


Q ss_pred             cccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCc
Q 047190          722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL  801 (1025)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L  801 (1025)
                                                      +.|.+..|++. ..|++++.| .|..||+|+|+++ .||-.|.+|+.|
T Consensus       192 --------------------------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L  236 (722)
T KOG0532|consen  192 --------------------------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL  236 (722)
T ss_pred             --------------------------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence                                            34445555554 345555544 3666777777776 566677777777


Q ss_pred             cEEeCCCCcCCC
Q 047190          802 DFLDLSRNHFFG  813 (1025)
Q Consensus       802 ~~LdLs~N~l~g  813 (1025)
                      ++|-|.+|.|+.
T Consensus       237 q~l~LenNPLqS  248 (722)
T KOG0532|consen  237 QVLQLENNPLQS  248 (722)
T ss_pred             eeeeeccCCCCC
Confidence            777777777663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=3.4e-11  Score=138.66  Aligned_cols=123  Identities=34%  Similarity=0.512  Sum_probs=66.9

Q ss_pred             EEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccccc-CCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR-SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       563 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      .+++..|.+...+ ..+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+.. +|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            4555555553222 22333455666666666666 3334444442 66666666666652 3344566666666666666


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      +++ .+|.... .+++|+.|++++|++. .+|........|++|++++|+
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            666 5555543 3566666666666665 344444444445566666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=7.2e-11  Score=135.95  Aligned_cols=200  Identities=34%  Similarity=0.442  Sum_probs=160.3

Q ss_pred             CEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCC-CccEEeCCCCcCccccChhhhhcCCCCcEEEee
Q 047190          586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS-QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLR  664 (1025)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~  664 (1025)
                      ..++++.|.+...+ ..+..++.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            46888888875433 344556889999999999995 455556664 9999999999998 8877777 79999999999


Q ss_pred             cCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccc
Q 047190          665 SNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQY  744 (1025)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (1025)
                      +|++. .+|...+.++.|+.|++++|+++ .+|........                                       
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~---------------------------------------  210 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA---------------------------------------  210 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhh---------------------------------------
Confidence            99998 55656668899999999999999 55544322222                                       


Q ss_pred             eeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCC
Q 047190          745 EYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL  824 (1025)
Q Consensus       745 ~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  824 (1025)
                              ++.+++++|.+. .++..+.++..+..|.+++|++... +..++.+++++.|++++|+++...+  ++.+..
T Consensus       211 --------L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~  278 (394)
T COG4886         211 --------LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTN  278 (394)
T ss_pred             --------hhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCc
Confidence                    367888888532 5677888999999999999998843 7778999999999999999996544  889999


Q ss_pred             CCEEECcCCcccccCCCC
Q 047190          825 LSVMDLSYNNFSGKIPKG  842 (1025)
Q Consensus       825 L~~Ldls~N~l~g~ip~~  842 (1025)
                      ++.||+++|.++...|..
T Consensus       279 l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         279 LRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cCEEeccCccccccchhh
Confidence            999999999999887764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.2e-11  Score=129.75  Aligned_cols=165  Identities=22%  Similarity=0.283  Sum_probs=115.3

Q ss_pred             cCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCccccccc
Q 047190          158 GNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINY  237 (1025)
Q Consensus       158 ~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  237 (1025)
                      +++++|+...|.++.+...+.......|++++.|||+.|-+..+..+......+++|+.|+++.|.+......... . .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~-~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-L-L  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-h-h
Confidence            5677888888887765433333567788999999999998888777778888899999999999987655443111 1 2


Q ss_pred             CCcccEEEccCCCCCCCCchh-hhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcc--hhhcCCCCc
Q 047190          238 SKSLEVIDLSNNYLTNSIYPW-LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP--KFLGNMSSL  314 (1025)
Q Consensus       238 ~~~L~~L~Ls~n~l~~~~~~~-l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L  314 (1025)
                      .+.|+.|.++.|.++.....+ +..+++  ++.|+|..|...........-++.|+.|||++|++...+  ...+.++.|
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPs--l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPS--LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCc--HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence            377888888888887433332 234556  788888888543333444555677888888888777755  456677777


Q ss_pred             cEEEeecCCCCC
Q 047190          315 KRLVFSYNELRG  326 (1025)
Q Consensus       315 ~~L~Ls~n~l~~  326 (1025)
                      +.|+++.+.+..
T Consensus       274 ~~Lnls~tgi~s  285 (505)
T KOG3207|consen  274 NQLNLSSTGIAS  285 (505)
T ss_pred             hhhhccccCcch
Confidence            777777776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.04  E-value=6.1e-11  Score=123.29  Aligned_cols=256  Identities=27%  Similarity=0.316  Sum_probs=131.4

Q ss_pred             ccccCcCCCCCcEEEccCCCCCCC---CCcccccCcccccccccccc---cCCCCcchhc-------cCCCCCCEEeccc
Q 047190          104 INPSLLKLQHLTYLDLSWNNFSGS---PIPEFIGSLGKLSELALSSA---QFAGPIPHQL-------GNLSKLQVLDLRF  170 (1025)
Q Consensus       104 l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~L~~L~~L~Ls~  170 (1025)
                      +-+.+.....+++++||+|.|...   .+...+.+.++|+..++|+-   +....+|+.+       -..++|++||||+
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            334566788999999999988642   13445666778888888764   2233455433       4556888888888


Q ss_pred             CCCCCCCCc---hhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEcc
Q 047190          171 NNLFSSGNL---DWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLS  247 (1025)
Q Consensus       171 n~i~~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls  247 (1025)
                      |.+...+..   ..++.+..|++|+|.+|.+.....  ..+++  -|.+|.  .+.          .....+.|+++...
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag--~~l~~--al~~l~--~~k----------k~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG--GRLGR--ALFELA--VNK----------KAASKPKLRVFICG  165 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH--HHHHH--HHHHHH--HHh----------ccCCCcceEEEEee
Confidence            876332222   235566677777777766543211  11110  000000  000          00011556666666


Q ss_pred             CCCCCCCCch----hhhhcCCCCccEEEcCCCCCCCC----chhhhhCCCCCcEEEccCCCCCC-----cchhhcCCCCc
Q 047190          248 NNYLTNSIYP----WLFNVSSNLVDHIDLGSNQLHGS----IPLAFGHMASLRHLDLLSNQLRE-----VPKFLGNMSSL  314 (1025)
Q Consensus       248 ~n~l~~~~~~----~l~~l~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L  314 (1025)
                      .|++...-..    .+...+.  |+.+.++.|.|...    +..++..+++|+.|||.+|.++.     +...+..+++|
T Consensus       166 rNrlen~ga~~~A~~~~~~~~--leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPT--LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             ccccccccHHHHHHHHHhccc--cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            6665432211    1222223  55555555555321    22345556666666666665543     23444555556


Q ss_pred             cEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCc----ccccccccC
Q 047190          315 KRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGT----ISKSIGQLS  390 (1025)
Q Consensus       315 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~  390 (1025)
                      +.|++++|.+.......+.+--                         -...|+|++|.+.+|.|+..    +.......+
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al-------------------------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~  298 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDAL-------------------------KESAPSLEVLELAGNEITRDAALALAACMAEKP  298 (382)
T ss_pred             eeecccccccccccHHHHHHHH-------------------------hccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence            6666666655544433332211                         12244555555555555422    112233456


Q ss_pred             CcceeeccCccc
Q 047190          391 KLELLLLSGNSL  402 (1025)
Q Consensus       391 ~L~~L~L~~N~l  402 (1025)
                      .|+.|+|++|.+
T Consensus       299 dL~kLnLngN~l  310 (382)
T KOG1909|consen  299 DLEKLNLNGNRL  310 (382)
T ss_pred             hhHHhcCCcccc
Confidence            677777777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=5.9e-11  Score=126.57  Aligned_cols=211  Identities=23%  Similarity=0.260  Sum_probs=97.0

Q ss_pred             CcccccccccccccCCCCcc--hhccCCCCCCEEecccCCCCCCC-CchhcccCCCCCeeeccCCcCCCCcchHHhhCCC
Q 047190          135 SLGKLSELALSSAQFAGPIP--HQLGNLSKLQVLDLRFNNLFSSG-NLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNL  211 (1025)
Q Consensus       135 ~l~~L~~L~Ls~n~l~~~~p--~~l~~L~~L~~L~Ls~n~i~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l  211 (1025)
                      ++.+|+...|.++.+.. .+  .....|++++.||||+|-+..-. .......+++|+.|+|+.|++....+ ...-..+
T Consensus       119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL  196 (505)
T ss_pred             hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence            34445555555444431 11  23344555555555555321111 11223445555555555555433211 0111134


Q ss_pred             CCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCc-hhhhhCCCC
Q 047190          212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI-PLAFGHMAS  290 (1025)
Q Consensus       212 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~  290 (1025)
                      +.|+.|.|+.|.++.-.-. .....+ |+|+.|+|..|............+..  |+.|||++|++-... -...+.++.
T Consensus       197 ~~lK~L~l~~CGls~k~V~-~~~~~f-Psl~~L~L~~N~~~~~~~~~~~i~~~--L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQ-WILLTF-PSLEVLYLEANEIILIKATSTKILQT--LQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhheEEeccCCCCHHHHH-HHHHhC-CcHHHhhhhcccccceecchhhhhhH--HhhccccCCcccccccccccccccc
Confidence            5555555555555421110 011122 55666666655322111111122223  666666666654321 123456677


Q ss_pred             CcEEEccCCCCCC--cchh-----hcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccc
Q 047190          291 LRHLDLLSNQLRE--VPKF-----LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITG  357 (1025)
Q Consensus       291 L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~  357 (1025)
                      |+.|+++.+++.+  +|+.     ...+++|++|++..|++..-  .++.++    ..+++|+.|....|.++.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~sl~~l----~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--RSLNHL----RTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc--cccchh----hccchhhhhhcccccccc
Confidence            7777777777766  3433     34566777777777776421  111111    122267777766776653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=9e-10  Score=108.27  Aligned_cols=122  Identities=29%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             cccEEEccCccccccCCCccc-CCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWF-QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      .+++|+|++|.|+. +. .++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+|+...+.....+++|+.|++
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            35666666666663 22 233 355666666666666533  23445555555566555555332211234555555555


Q ss_pred             CCCcCccccC-hhhhhcCCCCcEEEeecCcCcccCc---ccccccCcccEEE
Q 047190          639 GKNGLSGEIP-TWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILD  686 (1025)
Q Consensus       639 s~N~l~g~ip-~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~  686 (1025)
                      ++|+|...-- ..+. .+++|++|+|.+|+++...-   ..+..+|+|+.||
T Consensus        96 ~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   96 SNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            5555542110 1222 35555555555555543211   1234455555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=3.7e-10  Score=117.57  Aligned_cols=233  Identities=22%  Similarity=0.240  Sum_probs=134.1

Q ss_pred             CcEEEEECCCCCCCCCCccc----ccccccCcCCCCCcEEEccCCCCCCC---CCcc-------cccCcccccccccccc
Q 047190           82 GHVLGLDLRASSDSPVDALK----GTINPSLLKLQHLTYLDLSWNNFSGS---PIPE-------FIGSLGKLSELALSSA  147 (1025)
Q Consensus        82 ~~v~~L~L~~~~~~~~~~l~----g~l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~-------~l~~l~~L~~L~Ls~n  147 (1025)
                      ..++.|+|++      +.+.    ..+.+.+.+.+.|+.-+++.- ++|.   .+|+       .+-.+++|++||||.|
T Consensus        30 ~s~~~l~lsg------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   30 DSLTKLDLSG------NTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             CceEEEeccC------CchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            4688999998      3342    234566778888888888853 2322   2343       3445678999999999


Q ss_pred             cCCCCcch----hccCCCCCCEEecccCCCCCCCC------------chhcccCCCCCeeeccCCcCCCC--cchHHhhC
Q 047190          148 QFAGPIPH----QLGNLSKLQVLDLRFNNLFSSGN------------LDWLSYLSSLRYLDLADCKLSKF--SNWVQVLS  209 (1025)
Q Consensus       148 ~l~~~~p~----~l~~L~~L~~L~Ls~n~i~~~~~------------~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~  209 (1025)
                      .|.-..+.    -+..+..|++|.|.+|.+...+.            ....+.-+.||++..+.|++.+.  ..+...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            88754443    34567889999999887622111            01234457788888888887665  34556677


Q ss_pred             CCCCCCEEEcCCCCCCCCCCCc--ccccccCCcccEEEccCCCCCCCCch----hhhhcCCCCccEEEcCCCCCCCCchh
Q 047190          210 NLRSLTNLYLGYCDLPPISTPS--LLHINYSKSLEVIDLSNNYLTNSIYP----WLFNVSSNLVDHIDLGSNQLHGSIPL  283 (1025)
Q Consensus       210 ~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~----~l~~l~~~~L~~L~Ls~n~l~~~~p~  283 (1025)
                      ..+.|+.+.+..|.|.......  ..+.. +++|++|||..|.++.....    .+..++.  |+.|++++|.+...-..
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~--L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPH--LRELNLGDCLLENEGAI  259 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccch--heeecccccccccccHH
Confidence            7788888888888765433211  11222 36777777777766532222    2223333  55555555555433222


Q ss_pred             hh-----hCCCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeecCCC
Q 047190          284 AF-----GHMASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSYNEL  324 (1025)
Q Consensus       284 ~~-----~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l  324 (1025)
                      +|     ...+.|+.|.+.+|.++.     +...+...+.|+.|+|++|.+
T Consensus       260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            22     123455555555555443     112333344555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.90  E-value=4.7e-10  Score=110.24  Aligned_cols=129  Identities=32%  Similarity=0.329  Sum_probs=39.9

Q ss_pred             cCCCCCcEEEccCCCCCCCCCccccc-CcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhc-ccCC
Q 047190          109 LKLQHLTYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL-SYLS  186 (1025)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l-~~l~  186 (1025)
                      .+...++.|+|++|.|+.+   +.++ .+.+|+.|+|++|.++. ++ .+..+++|++|++++|.|.+..  ..+ ..++
T Consensus        16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSIS--EGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C--HHHHHH-T
T ss_pred             ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccc--cchHHhCC
Confidence            3444567777777777643   2344 46677777777777763 32 3666777777777777663321  223 3567


Q ss_pred             CCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE
Q 047190          187 SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID  245 (1025)
Q Consensus       187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  245 (1025)
                      +|++|++++|++..+.+ ...++.+++|++|++.+|.++............+|+|+.||
T Consensus        89 ~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             T--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            77777777777666544 24555666666666666665544332222222235666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=7e-10  Score=112.32  Aligned_cols=133  Identities=27%  Similarity=0.301  Sum_probs=82.6

Q ss_pred             CCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccc
Q 047190          630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE  709 (1025)
Q Consensus       630 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  709 (1025)
                      ...|+++||++|.|+ .+.+++- -.|.++.|++++|.+....  .+..+++|+.||||+|.++..              
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~--------------  344 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC--------------  344 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh--------------
Confidence            345666666666666 5555554 4666666666666665322  355666666666666665521              


Q ss_pred             cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccc
Q 047190          710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG  789 (1025)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g  789 (1025)
                                                                                ...-..+.+++.|+|+.|.|..
T Consensus       345 ----------------------------------------------------------~Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  345 ----------------------------------------------------------VGWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             ----------------------------------------------------------hhhHhhhcCEeeeehhhhhHhh
Confidence                                                                      1111233345555555555542


Q ss_pred             cCCCCCCCCCCccEEeCCCCcCCCcC-cccccCCCCCCEEECcCCcccccCC
Q 047190          790 QITPRIGQLKSLDFLDLSRNHFFGGI-PSSLSRLRLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       790 ~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~Ldls~N~l~g~ip  840 (1025)
                      .  +.++.+-+|+.||+++|+|.... -..+++++-|+.+-+.+|++.+.+.
T Consensus       367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  367 L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            2  23566678888888888886432 2577888999999999999988654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=9.4e-10  Score=111.41  Aligned_cols=132  Identities=24%  Similarity=0.292  Sum_probs=85.0

Q ss_pred             CCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCC
Q 047190          287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP  366 (1025)
Q Consensus       287 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~  366 (1025)
                      ..+.|+++||++|.++.+.+++.-.+.++.|++++|.+....  .+..++       +|+.|||++|.++...-.-.++-
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~-------~L~~LDLS~N~Ls~~~Gwh~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELP-------QLQLLDLSGNLLAECVGWHLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcc-------cceEeecccchhHhhhhhHhhhc
Confidence            345567777777777777666766777777777777765432  244444       77777777776663322234556


Q ss_pred             CCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcccc
Q 047190          367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL  429 (1025)
Q Consensus       367 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  429 (1025)
                      +.+.|.|++|.+...  ..++.+-+|..||+++|+|...-....++++|-|+.+.|.+|++.+
T Consensus       353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            677777777776522  3456667777777777777654444446777777777777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.75  E-value=5.2e-09  Score=128.40  Aligned_cols=109  Identities=36%  Similarity=0.398  Sum_probs=68.5

Q ss_pred             CcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCC
Q 047190          108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSS  187 (1025)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~  187 (1025)
                      |..++.|++|||++|.=-+ .+|..++.|-+||||+|++..++ .+|..+++|+.|.+||+..+.... ..+.....+++
T Consensus       567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc-cccchhhhccc
Confidence            5567778888887754323 47777887888888888877777 677777888888888777665311 11334445777


Q ss_pred             CCeeeccCCcCCCCcchHHhhCCCCCCCEEEc
Q 047190          188 LRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL  219 (1025)
Q Consensus       188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L  219 (1025)
                      ||+|.+..............+.++.+|+.+..
T Consensus       644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            77777766553332223344445555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=9.3e-09  Score=83.02  Aligned_cols=60  Identities=40%  Similarity=0.486  Sum_probs=40.5

Q ss_pred             cCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcc
Q 047190          776 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNF  835 (1025)
Q Consensus       776 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l  835 (1025)
                      +|++|++++|+++...+..|.++++|++||+++|+++...|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466666666666666566666677777777777777666666667777777777776654

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.70  E-value=1.9e-08  Score=74.13  Aligned_cols=41  Identities=44%  Similarity=0.987  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCcccceEec
Q 047190           37 DEEKESLLAFKQGLI-DESGILSSWGREDEKRNCCKWRGVRCS   78 (1025)
Q Consensus        37 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~~~~~~~c~w~gv~C~   78 (1025)
                      ++|++||++||+++. +|.+.+.+|+... ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            689999999999998 5778999998411 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=1.7e-09  Score=124.64  Aligned_cols=197  Identities=30%  Similarity=0.350  Sum_probs=100.9

Q ss_pred             CCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCC
Q 047190          110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLR  189 (1025)
Q Consensus       110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~  189 (1025)
                      .+..++.+++..|.+..  +-..++.+++|.+|++.+|++.. +...+..+++|++|++++|.|..   ...+..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~---i~~l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK---LEGLSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc---ccchhhccchh
Confidence            45556666666666653  23345666777777777777663 33335666777777777776632   33445555577


Q ss_pred             eeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccE
Q 047190          190 YLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH  269 (1025)
Q Consensus       190 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~  269 (1025)
                      .|++++|.++.+..    +..++.|+.+++++|.+...... . ...+ .+++.+++.+|.+...  ..+.....  +..
T Consensus       144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~-~~l~~l~l~~n~i~~i--~~~~~~~~--l~~  212 (414)
T KOG0531|consen  144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIEND-E-LSEL-ISLEELDLGGNSIREI--EGLDLLKK--LVL  212 (414)
T ss_pred             hheeccCcchhccC----CccchhhhcccCCcchhhhhhhh-h-hhhc-cchHHHhccCCchhcc--cchHHHHH--HHH
Confidence            77777777666432    34466666666666666554431 0 0111 5556666666655421  11111222  333


Q ss_pred             EEcCCCCCCCCchhhhhCCC--CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCC
Q 047190          270 IDLGSNQLHGSIPLAFGHMA--SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR  325 (1025)
Q Consensus       270 L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  325 (1025)
                      +++..|.++..-+  +..+.  .|+.+++++|.+..++..+..+.++..|++..|++.
T Consensus       213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            3444444442211  11111  245555555555544434444444445555444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=3.1e-09  Score=122.44  Aligned_cols=56  Identities=27%  Similarity=0.326  Sum_probs=23.3

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  812 (1025)
                      +.+++++|++.. ++..+..+..+..|++++|++...-.  +.....+..+.++.|.+.
T Consensus       235 ~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  235 RELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHhcccCcccc-ccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            444555555442 11333444445555555554443211  222333444444444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.2e-08  Score=80.84  Aligned_cols=60  Identities=38%  Similarity=0.496  Sum_probs=57.1

Q ss_pred             ceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcC
Q 047190          752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF  811 (1025)
Q Consensus       752 ~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l  811 (1025)
                      .|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            568999999999988889999999999999999999999999999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=2.2e-08  Score=122.92  Aligned_cols=108  Identities=30%  Similarity=0.259  Sum_probs=80.2

Q ss_pred             CCCCcEEEccCCC--CCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190          111 LQHLTYLDLSWNN--FSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL  188 (1025)
Q Consensus       111 l~~L~~L~Ls~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  188 (1025)
                      .+.|++|=+.+|.  +... .+++|..++.|++|||++|.--+.+|..++.|-+||+|+|++..+  ...|..+.+++.|
T Consensus       544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhh
Confidence            3368888888875  4432 455678889999999998876678899999999999999988876  3567778888888


Q ss_pred             CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCC
Q 047190          189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCD  223 (1025)
Q Consensus       189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  223 (1025)
                      .+|++..+......  +.....+++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccc--cchhhhcccccEEEeeccc
Confidence            88888877543321  3455668888888776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=6.9e-09  Score=105.40  Aligned_cols=60  Identities=30%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCC
Q 047190          162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCD  223 (1025)
Q Consensus       162 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  223 (1025)
                      .|++||||...|+.......++.+++|+.|.|.++++.+  .+...+++-.+|+.|+++.|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~s  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCS  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeecccccc
Confidence            355555555444222222334555555555555555544  344455555555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=6.4e-09  Score=105.65  Aligned_cols=181  Identities=24%  Similarity=0.232  Sum_probs=92.9

Q ss_pred             CCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCC-chhcccCCCCCee
Q 047190          113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGN-LDWLSYLSSLRYL  191 (1025)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~-~~~l~~l~~L~~L  191 (1025)
                      .|++||||...|+..++-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+|+.+.-++... .-.+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            366677776666544444555666677777777777766666666666667777776664211111 1124445555555


Q ss_pred             eccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCC--CC-CCchhhhhcCCCCcc
Q 047190          192 DLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYL--TN-SIYPWLFNVSSNLVD  268 (1025)
Q Consensus       192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~-~~~~~l~~l~~~~L~  268 (1025)
                      +|+.|.+..                          .... .......++|+.|+++++.-  .. .+..-....+.  +.
T Consensus       266 NlsWc~l~~--------------------------~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~--l~  316 (419)
T KOG2120|consen  266 NLSWCFLFT--------------------------EKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN--LV  316 (419)
T ss_pred             CchHhhccc--------------------------hhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc--ee
Confidence            555554332                          2211 11111124555555555421  11 11111123333  56


Q ss_pred             EEEcCCCC-CCCCchhhhhCCCCCcEEEccCCCCCCcch---hhcCCCCccEEEeecCC
Q 047190          269 HIDLGSNQ-LHGSIPLAFGHMASLRHLDLLSNQLREVPK---FLGNMSSLKRLVFSYNE  323 (1025)
Q Consensus       269 ~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~---~l~~l~~L~~L~Ls~n~  323 (1025)
                      +|||+.|. ++...-..|-+++.|++|.++.|..- +|.   .+...+.|.+|++.++-
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence            66666553 33333445556666777777666432 222   34566778888777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=1.2e-08  Score=115.17  Aligned_cols=81  Identities=37%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCc-ccccCCCCCCEEECcC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIP-SSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~Ldls~  832 (1025)
                      +.||||+|.+.-..--....+. |+.|+|++|.++...  .+.+|++|+.||||+|-|++.-. ..+..|..|..|.|.+
T Consensus       212 khLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  212 KHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             cccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            5555666555532222222233 666666666665432  35566667777777776665311 2233455666667777


Q ss_pred             Ccccc
Q 047190          833 NNFSG  837 (1025)
Q Consensus       833 N~l~g  837 (1025)
                      |++.+
T Consensus       289 NPl~c  293 (1096)
T KOG1859|consen  289 NPLCC  293 (1096)
T ss_pred             Ccccc
Confidence            76654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2e-07  Score=94.92  Aligned_cols=90  Identities=24%  Similarity=0.293  Sum_probs=62.9

Q ss_pred             CCCCCEEecccCCCCCCCCchhcc-cCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccC
Q 047190          160 LSKLQVLDLRFNNLFSSGNLDWLS-YLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYS  238 (1025)
Q Consensus       160 L~~L~~L~Ls~n~i~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  238 (1025)
                      +..++.|.+.++.|-..+....++ .++.++.|||.+|.+++..++...+.++|.|+.|+++.|.+...+....  ... 
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~-  120 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPL-  120 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccc-
Confidence            344555666666554444444444 4678999999999999988888888999999999999999877654311  122 


Q ss_pred             CcccEEEccCCCCC
Q 047190          239 KSLEVIDLSNNYLT  252 (1025)
Q Consensus       239 ~~L~~L~Ls~n~l~  252 (1025)
                      .+|++|-|.+..+.
T Consensus       121 ~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLS  134 (418)
T ss_pred             cceEEEEEcCCCCC
Confidence            66777777666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=6.6e-08  Score=109.34  Aligned_cols=126  Identities=31%  Similarity=0.306  Sum_probs=68.6

Q ss_pred             CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCC--CCCCC
Q 047190          290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDL--GGFPS  367 (1025)
Q Consensus       290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l--~~l~~  367 (1025)
                      .|...+.++|.+..+..++.-++.|+.|+|++|++....  .+..++       +|++|||++|.+. .+|.+  .++. 
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-------~LkhLDlsyN~L~-~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-------KLKHLDLSYNCLR-HVPQLSMVGCK-  233 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-------cccccccccchhc-cccccchhhhh-
Confidence            355555566666555555555666666666666655432  344444       6666666666655 34432  2222 


Q ss_pred             CcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccc
Q 047190          368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT  428 (1025)
Q Consensus       368 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  428 (1025)
                      |+.|.+++|.++..  ..+.++.+|+.||++.|-+.+.-.-..+..+..|+.|.|.+|++-
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66666666665522  245556666666666666654333333444555666666666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=1.2e-07  Score=85.59  Aligned_cols=87  Identities=26%  Similarity=0.303  Sum_probs=59.8

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.++..||..+|.+- +||-.+---+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            66777777776 46777888888888888888887 44556666888888888888776 34444332233444566777


Q ss_pred             cccccCCCCC
Q 047190          834 NFSGKIPKGT  843 (1025)
Q Consensus       834 ~l~g~ip~~~  843 (1025)
                      ++.|..|...
T Consensus       157 pl~~~~~~kl  166 (177)
T KOG4579|consen  157 PLGDETKKKL  166 (177)
T ss_pred             cccccCcccc
Confidence            7777777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=4.5e-07  Score=92.49  Aligned_cols=183  Identities=22%  Similarity=0.260  Sum_probs=92.1

Q ss_pred             CcccEEEccCCCCCC--CCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC--cchhhcCCCCc
Q 047190          239 KSLEVIDLSNNYLTN--SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE--VPKFLGNMSSL  314 (1025)
Q Consensus       239 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L  314 (1025)
                      +.++.+||.+|.++.  .+..-+.+++.  ++.|+++.|.+...|...-....+|+.|-|.+..+.-  ....+..++.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~--l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPA--LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCcc--ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            444444444444432  12222334444  5555555555543322111334556666665555443  33445555566


Q ss_pred             cEEEeecCCCCCcc--hHHhhhcC---CCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcc-cccccc
Q 047190          315 KRLVFSYNELRGEL--SEFIQNVS---SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTI-SKSIGQ  388 (1025)
Q Consensus       315 ~~L~Ls~n~l~~~~--~~~~~~l~---~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~-p~~l~~  388 (1025)
                      +.|.++.|.+....  .+......   ......+.+..+.++-|++.      .-+|++..+.+..|.+...- ......
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------r~Fpnv~sv~v~e~PlK~~s~ek~se~  222 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------RIFPNVNSVFVCEGPLKTESSEKGSEP  222 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH------hhcccchheeeecCcccchhhcccCCC
Confidence            66666655321100  00000000   00011123333344444443      23567777888888765332 234455


Q ss_pred             cCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcccc
Q 047190          389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL  429 (1025)
Q Consensus       389 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  429 (1025)
                      ++.+.-|+|+.|++..-.....+.+++.|..|.++.+++..
T Consensus       223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            67777888888888765555567788888888888887764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.01  E-value=1.8e-06  Score=87.04  Aligned_cols=228  Identities=22%  Similarity=0.157  Sum_probs=101.2

Q ss_pred             hccCCCCCCEEecccCCCCCCCCchh----cccCCCCCeeeccCCcCCCC-c-------chHHhhCCCCCCCEEEcCCCC
Q 047190          156 QLGNLSKLQVLDLRFNNLFSSGNLDW----LSYLSSLRYLDLADCKLSKF-S-------NWVQVLSNLRSLTNLYLGYCD  223 (1025)
Q Consensus       156 ~l~~L~~L~~L~Ls~n~i~~~~~~~~----l~~l~~L~~L~L~~n~l~~~-~-------~~~~~l~~l~~L~~L~L~~n~  223 (1025)
                      .+..+..++.+|||+|.| ......+    +.+-.+|+..+++.-..... .       -+..++-+||+|+..+|+.|.
T Consensus        25 el~~~d~~~evdLSGNti-gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          25 ELEMMDELVEVDLSGNTI-GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHhhcceeEEeccCCcc-cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            344577788888888876 2222222    34456666666655322111 1       122344555555555555555


Q ss_pred             CCCCCCCcc-cccccCCcccEEEccCCCCCCCC----chhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccC
Q 047190          224 LPPISTPSL-LHINYSKSLEVIDLSNNYLTNSI----YPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS  298 (1025)
Q Consensus       224 l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  298 (1025)
                      +....+..+ .+....+.|++|.+++|.+....    ...++.+..                 -.-.++-+.|++.....
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~-----------------nKKaa~kp~Le~vicgr  166 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY-----------------NKKAADKPKLEVVICGR  166 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH-----------------HhhhccCCCceEEEecc
Confidence            443332211 01111134444444444332111    111111100                 01122345666666666


Q ss_pred             CCCCCcch-----hhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-----CCCCCCC
Q 047190          299 NQLREVPK-----FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-----LGGFPSL  368 (1025)
Q Consensus       299 n~l~~lp~-----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-----l~~l~~L  368 (1025)
                      |++...|.     .+..-..|+.+.+..|.|.-..-..+.-+  +...+.+|+.|||.+|.++.....     +...+.|
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~--gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL--GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH--HHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            66655331     23333466666666666553321111110  011223666666666665532111     3334445


Q ss_pred             cEEEeecccccCccccccc------ccCCcceeeccCcccc
Q 047190          369 QILSLENNRLTGTISKSIG------QLSKLELLLLSGNSLR  403 (1025)
Q Consensus       369 ~~L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~N~l~  403 (1025)
                      ++|.+.+|-++.....++.      ..++|..|-..+|...
T Consensus       245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            6666666655433322221      1345555555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=5.1e-06  Score=83.91  Aligned_cols=93  Identities=25%  Similarity=0.201  Sum_probs=56.9

Q ss_pred             CcCCCCCcEEEccCCCCCCC---CCcccccCcccccccccccccC---CCCcc-------hhccCCCCCCEEecccCCCC
Q 047190          108 LLKLQHLTYLDLSWNNFSGS---PIPEFIGSLGKLSELALSSAQF---AGPIP-------HQLGNLSKLQVLDLRFNNLF  174 (1025)
Q Consensus       108 l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~L~~L~~L~Ls~n~i~  174 (1025)
                      +..+..++.++||+|.|...   .+...+.+-.+|+..++|.-..   .+.+|       +.+.++++|+..+||.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34578888999999988643   1233445557788887776421   12233       34456788888888888763


Q ss_pred             CCCCc---hhcccCCCCCeeeccCCcCCC
Q 047190          175 SSGNL---DWLSYLSSLRYLDLADCKLSK  200 (1025)
Q Consensus       175 ~~~~~---~~l~~l~~L~~L~L~~n~l~~  200 (1025)
                      .....   ..+++-+.|+||.|++|.+..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            22211   345566677777777765543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=9.4e-07  Score=80.00  Aligned_cols=82  Identities=24%  Similarity=0.352  Sum_probs=35.1

Q ss_pred             CCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEc
Q 047190          608 SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDL  687 (1025)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  687 (1025)
                      .|+..+|++|.+....+..-...+.+++|++++|.|+ .+|+.+. .++.|+.|+++.|.+. ..|..+..+.++..||.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3344444444444322222223334444444444444 4444433 3444444444444444 33333434444444444


Q ss_pred             ccccc
Q 047190          688 SLNNI  692 (1025)
Q Consensus       688 s~N~l  692 (1025)
                      .+|.+
T Consensus       131 ~~na~  135 (177)
T KOG4579|consen  131 PENAR  135 (177)
T ss_pred             CCCcc
Confidence            44443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.83  E-value=2e-06  Score=92.09  Aligned_cols=300  Identities=18%  Similarity=0.177  Sum_probs=154.6

Q ss_pred             CCcEEEccCCCCCCC-CCcccccCccccccccccccc-CCCCcchhc-cCCCCCCEEecccCCCCCCCCch-hcccCCCC
Q 047190          113 HLTYLDLSWNNFSGS-PIPEFIGSLGKLSELALSSAQ-FAGPIPHQL-GNLSKLQVLDLRFNNLFSSGNLD-WLSYLSSL  188 (1025)
Q Consensus       113 ~L~~L~Ls~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~L~~L~~L~Ls~n~i~~~~~~~-~l~~l~~L  188 (1025)
                      .|+.|.+.++.=.+. ++-.+...++++++|++.++. +++..-.++ ..+++|++|+|..|...+..... ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            455666665542221 233444566777777766664 222222222 34667777777665321222222 23456777


Q ss_pred             CeeeccCCc-CCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCC-CCCCCchhh-hhcCCC
Q 047190          189 RYLDLADCK-LSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY-LTNSIYPWL-FNVSSN  265 (1025)
Q Consensus       189 ~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l-~~l~~~  265 (1025)
                      ++|+++.+. +++ ..+-....++..++.+.+++|.=.+.... ......+..+..+++..+. +++...-.+ ..... 
T Consensus       219 ~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~-  295 (483)
T KOG4341|consen  219 KYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA-  295 (483)
T ss_pred             HHhhhccCchhhc-CcchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhhhH-
Confidence            777777764 332 22223345566666666665532111110 0111112345555554542 232111111 12233 


Q ss_pred             CccEEEcCCCCCCC-Cchhhh-hCCCCCcEEEccCCC-CCC--cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCC
Q 047190          266 LVDHIDLGSNQLHG-SIPLAF-GHMASLRHLDLLSNQ-LRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST  340 (1025)
Q Consensus       266 ~L~~L~Ls~n~l~~-~~p~~~-~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~  340 (1025)
                       |+.|+.+++...+ ..-.++ .++.+|+.|.+++++ ++.  +...=.+...|+.+++..+......  .+..+   ..
T Consensus       296 -lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl---s~  369 (483)
T KOG4341|consen  296 -LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL---SR  369 (483)
T ss_pred             -hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh---cc
Confidence             6777777765432 222233 456788888888875 333  2222346678888888877644221  12222   24


Q ss_pred             CCCCCcEEEcccccccccc--CC----CCCCCCCcEEEeeccccc-CcccccccccCCcceeeccCcccccccc-hhhhc
Q 047190          341 KNSSLEWLYLAFNEITGTI--PD----LGGFPSLQILSLENNRLT-GTISKSIGQLSKLELLLLSGNSLRGVIS-EALFS  412 (1025)
Q Consensus       341 ~~~~L~~L~L~~n~l~~~~--p~----l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~  412 (1025)
                      .++.|+.+.|++|......  -.    -..+..|+.+.++++... ...-+.+..+++|+.+++-.++-...-+ ..+-.
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence            5568888888888653222  11    245667888889888653 3334456678889998888776432211 12234


Q ss_pred             CCCCCcEEE
Q 047190          413 NLSSLDTLQ  421 (1025)
Q Consensus       413 ~l~~L~~L~  421 (1025)
                      ++|++++..
T Consensus       450 ~lp~i~v~a  458 (483)
T KOG4341|consen  450 HLPNIKVHA  458 (483)
T ss_pred             hCccceehh
Confidence            566665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=5.9e-05  Score=83.50  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=46.9

Q ss_pred             cccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcc
Q 047190          603 MSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHI  682 (1025)
Q Consensus       603 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  682 (1025)
                      +..+..++.|++++|.++. +|.   --.+|+.|+++++.--..+|..+   .++|++|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            3345778888888887763 342   12468888887743323667544   35788888888732224443      46


Q ss_pred             cEEEcccccc
Q 047190          683 QILDLSLNNI  692 (1025)
Q Consensus       683 ~~L~Ls~N~l  692 (1025)
                      +.|++++|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            6666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.68  E-value=1.9e-05  Score=80.41  Aligned_cols=118  Identities=24%  Similarity=0.259  Sum_probs=82.7

Q ss_pred             ccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccc--cCCCCcchhccCCCCCCEEecccCCCCCCC
Q 047190          100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSA--QFAGPIPHQLGNLSKLQVLDLRFNNLFSSG  177 (1025)
Q Consensus       100 l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~  177 (1025)
                      ..|.+....-.+..|+.|++.+..++..   ..+-.|++|++|.+|.|  ++++.++.....+++|++|++++|+|....
T Consensus        31 ~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls  107 (260)
T KOG2739|consen   31 GAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS  107 (260)
T ss_pred             cCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc
Confidence            3444555555667777777777777643   34566889999999999  667666666677799999999999985555


Q ss_pred             CchhcccCCCCCeeeccCCcCCCCcch-HHhhCCCCCCCEEEcC
Q 047190          178 NLDWLSYLSSLRYLDLADCKLSKFSNW-VQVLSNLRSLTNLYLG  220 (1025)
Q Consensus       178 ~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~l~~L~~L~L~  220 (1025)
                      ....+..+.+|..|++.+|..+...+. -..+.-+++|++|+-.
T Consensus       108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            566677788888888888877665332 2344556666665433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.60  E-value=1e-05  Score=86.85  Aligned_cols=279  Identities=20%  Similarity=0.177  Sum_probs=163.0

Q ss_pred             ccccccccccccCCCC--cchhccCCCCCCEEecccCCCCCCCCch-hcccCCCCCeeeccCCc-CCCCcchHHhhCCCC
Q 047190          137 GKLSELALSSAQFAGP--IPHQLGNLSKLQVLDLRFNNLFSSGNLD-WLSYLSSLRYLDLADCK-LSKFSNWVQVLSNLR  212 (1025)
Q Consensus       137 ~~L~~L~Ls~n~l~~~--~p~~l~~L~~L~~L~Ls~n~i~~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~  212 (1025)
                      ..|+.|.+.++.=.+.  +-..-.+++++++|++.++...+..... .-..+++|++|++..|. ++.. .+......++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhh
Confidence            4688899988864433  2234467899999999999743333332 33578999999999964 4442 2233556799


Q ss_pred             CCCEEEcCCCC-CCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCC--CCccEEEcCCCC-CCCCc-hhhhhC
Q 047190          213 SLTNLYLGYCD-LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS--NLVDHIDLGSNQ-LHGSI-PLAFGH  287 (1025)
Q Consensus       213 ~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~--~~L~~L~Ls~n~-l~~~~-p~~~~~  287 (1025)
                      +|++|+++.|. +++....  ....-++.++.+.+.+|.-.  -.+.+.....  ..+.++++..|. ++... -..-..
T Consensus       217 kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             hHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            99999999986 4442221  11222255777777765321  1122221111  015566666664 33221 112245


Q ss_pred             CCCCcEEEccCCCC-CC--cchhhcCCCCccEEEeecCCC-CCcchHHhhhcCCCCCCCCCCcEEEccccccccc--cCC
Q 047190          288 MASLRHLDLLSNQL-RE--VPKFLGNMSSLKRLVFSYNEL-RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT--IPD  361 (1025)
Q Consensus       288 l~~L~~L~Ls~n~l-~~--lp~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~--~p~  361 (1025)
                      +..|+.|+.+++.- +.  +-.--.+..+|+.|.++.++- +......++      ...+.|+.+++..+.....  +..
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------RNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------cCChhhhhhcccccceehhhhHhh
Confidence            78899999998754 33  223345778999999999873 222111121      2345788888887754322  111


Q ss_pred             -CCCCCCCcEEEeecccccCcc-----cccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190          362 -LGGFPSLQILSLENNRLTGTI-----SKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS  426 (1025)
Q Consensus       362 -l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (1025)
                       -.+++.|+++.+++|......     ...-..+..|+.+.|+++..........+..+++|+.+++.+++
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence             356778888888877543221     11123355677777777776544333345566666666666553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=3.4e-05  Score=92.85  Aligned_cols=146  Identities=24%  Similarity=0.271  Sum_probs=92.8

Q ss_pred             CCCCcEEEccCCCCCCCCCccccc-CcccccccccccccCCC-CcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190          111 LQHLTYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAG-PIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL  188 (1025)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  188 (1025)
                      -.+|++||+++...-...-|..++ .||+|+.|.+++-.+.. ..-....++++|..||+|+.++   .....+++|++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNLSGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCcHHHhccccH
Confidence            356777888776543222344444 46888888887766643 2334446678888888888765   334667788888


Q ss_pred             CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCC---cccccccCCcccEEEccCCCCCCCCchhhh
Q 047190          189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP---SLLHINYSKSLEVIDLSNNYLTNSIYPWLF  260 (1025)
Q Consensus       189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~  260 (1025)
                      ++|.+.+-.+....+ ...+-+|++|+.||+|..........   ..+....+|+|+.||.|+..+.+.+.+.+.
T Consensus       198 q~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             HHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            888887777766443 34456688888888887654433210   012222348999999998888765555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.52  E-value=6.7e-05  Score=55.35  Aligned_cols=36  Identities=39%  Similarity=0.610  Sum_probs=16.9

Q ss_pred             cCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190          776 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       776 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  812 (1025)
                      +|++|++++|+|+. +|..++++++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34555555555552 3334555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=0.00013  Score=53.85  Aligned_cols=36  Identities=36%  Similarity=0.572  Sum_probs=20.9

Q ss_pred             CCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCC
Q 047190          290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR  325 (1025)
Q Consensus       290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  325 (1025)
                      +|++|++++|+++.+|+.++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            456666666666666555666666666666666555

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00046  Score=76.57  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             CCCCCCCCceeeccCCcccccccccccccCCcccEEEccCc-cccccCCCcccCCCCCCEEEcCCCccc--ccCCccccc
Q 047190          529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNN-LLSGRLPDCWFQFDSLAILNLANNSFF--GEIPDSMSF  605 (1025)
Q Consensus       529 ~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~  605 (1025)
                      +|..|.+|+.|.+++|.--..++...   .++|+.|++++| .+. .+|.      +|+.|+++.+...  +.+|     
T Consensus        67 LP~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LP-----  131 (426)
T PRK15386         67 LPVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVP-----  131 (426)
T ss_pred             cCCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCc-----
Confidence            34456678888887753322233211   246778888777 443 3443      4666666665442  1222     


Q ss_pred             ccCCCEEEcccCc-cc-ccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecC
Q 047190          606 LRSIGSLSLYNNS-LS-GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN  666 (1025)
Q Consensus       606 l~~L~~L~L~~N~-l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N  666 (1025)
                       ++|+.|.+.+++ .. ..+|..+  -++|++|++++|... .+|..+   ..+|+.|+++.|
T Consensus       132 -ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n  187 (426)
T PRK15386        132 -NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE  187 (426)
T ss_pred             -chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence             345566664322 11 0111111  156777777777765 455433   346777777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00012  Score=71.34  Aligned_cols=84  Identities=25%  Similarity=0.291  Sum_probs=44.4

Q ss_pred             CCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeee
Q 047190          113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLD  192 (1025)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~  192 (1025)
                      ....+||++|.+...   ..|..+++|.+|.|++|+|+..-|.--..+++|+.|.|.+|++-..+....+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            445566666665432   34455666666666666666444443334455666666666553344444444455555555


Q ss_pred             ccCCcCC
Q 047190          193 LADCKLS  199 (1025)
Q Consensus       193 L~~n~l~  199 (1025)
                      +-+|.++
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.39  E-value=0.00024  Score=69.30  Aligned_cols=129  Identities=20%  Similarity=0.233  Sum_probs=81.6

Q ss_pred             cEEEccCCCCCCCCCccccc-CcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeec
Q 047190          115 TYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDL  193 (1025)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L  193 (1025)
                      +.++|.+.++..+   +-++ .+.+...+||++|.+.. + ..|..+++|.+|.|++|.|.. ..+..-.-+++|+.|.|
T Consensus        22 ~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   22 RELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccch---hhccccccccceecccccchhh-c-ccCCCccccceEEecCCccee-eccchhhhccccceEEe
Confidence            4555555554321   1122 13456678888888762 2 346778888888888888733 22333345677888888


Q ss_pred             cCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCC
Q 047190          194 ADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY  250 (1025)
Q Consensus       194 ~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~  250 (1025)
                      .+|++..+.+ ...+..++.|++|.+-+|.++.............++|++||...-.
T Consensus        96 tnNsi~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   96 TNNSIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCcchhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8888877654 3557778888888888887766554433333333778888776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.36  E-value=0.00013  Score=87.83  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=13.9

Q ss_pred             CCCCccEEEeecCCCCCcchHHh
Q 047190          310 NMSSLKRLVFSYNELRGELSEFI  332 (1025)
Q Consensus       310 ~l~~L~~L~Ls~n~l~~~~~~~~  332 (1025)
                      .+++|+.||.|++.+.+.+-+.+
T Consensus       248 ~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             cCccccEEecCCcchhHHHHHHH
Confidence            35677777777666665544433

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=97.06  E-value=8.9e-06  Score=78.40  Aligned_cols=68  Identities=12%  Similarity=0.241  Sum_probs=54.7

Q ss_pred             hHHHHH-hhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCccc
Q 047190          927 YYNFLT-RVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETV  994 (1025)
Q Consensus       927 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~  994 (1025)
                      |..|.. ++.+|+..++.+.||+....+++|.++||+           .+|++||++|+|+|++|++    ++|+.++..
T Consensus         2 fisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~----s~wc~~el~   77 (141)
T PF01582_consen    2 FISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLS----SEWCLFELQ   77 (141)
T ss_dssp             EEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHH----HTHHHHHHH
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeeccccc----ccchhhhhh
Confidence            344555 789999999999999987789999999999           5899999999999999999    666655554


Q ss_pred             cccc
Q 047190          995 PAEQ  998 (1025)
Q Consensus       995 f~~~  998 (1025)
                      .+.+
T Consensus        78 ~a~~   81 (141)
T PF01582_consen   78 EALE   81 (141)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            4433

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.00026  Score=72.32  Aligned_cols=114  Identities=21%  Similarity=0.225  Sum_probs=72.8

Q ss_pred             CcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCC-CCchhcccCCCCCeeeccCCcCCCCcchHHh
Q 047190          129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSS-GNLDWLSYLSSLRYLDLADCKLSKFSNWVQV  207 (1025)
Q Consensus       129 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  207 (1025)
                      +....-.+..|+.|.+.+..++.  -..+..|++|++|++|.|+.... +.......+++|++|++++|++..+.. ...
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence            34444456677777777776652  23466788999999999943222 222334456899999999998876433 345


Q ss_pred             hCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE
Q 047190          208 LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID  245 (1025)
Q Consensus       208 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  245 (1025)
                      +..+.+|..|++.+|..+.........+.++++|++||
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            66777788888888876664443333344445666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.79  E-value=0.0028  Score=59.88  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=40.6

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      ++.|+.+.+.+ .+......+|.++++|+.+.+.++ +.......|..+.+++.+.+.+ .+.......|..+++|+.++
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            34556666553 344444555556656666666553 4434444455555555555543 33323334455555555555


Q ss_pred             CCCCcCccccChhhhhcCCCCcEEEee
Q 047190          638 LGKNGLSGEIPTWIGESLPNLVVLSLR  664 (1025)
Q Consensus       638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~  664 (1025)
                      +..+ +. .++...+... +|+.+.+.
T Consensus        88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   88 IPSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             cCcc-cc-EEchhhhcCC-CceEEEEC
Confidence            5443 33 3443333333 55555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.66  E-value=0.0041  Score=58.76  Aligned_cols=124  Identities=19%  Similarity=0.209  Sum_probs=73.6

Q ss_pred             CCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcC
Q 047190          576 PDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL  655 (1025)
Q Consensus       576 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l  655 (1025)
                      ..+|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+.+.+.+ .+. .++...+..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            45788888999999985 576666778888989999999885 7666667899998999999976 444 5677677568


Q ss_pred             CCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccc
Q 047190          656 PNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM  706 (1025)
Q Consensus       656 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l  706 (1025)
                      ++|+.+++..+ +.......+.+. .|+.+.+.. .+......+|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99999999776 655556677776 889888876 5554555666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.00022  Score=72.68  Aligned_cols=83  Identities=23%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             CCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCc--ccccc
Q 047190          159 NLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPS--LLHIN  236 (1025)
Q Consensus       159 ~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~  236 (1025)
                      +|+.|++|.||-|+|   .....+..|++|++|+|..|.|.++.+ ..-+.++++|+.|.|..|.-.+..+..  .....
T Consensus        39 kMp~lEVLsLSvNkI---ssL~pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKI---SSLAPLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             hcccceeEEeecccc---ccchhHHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            344444444444443   222334455555555555555555433 334555666666666555544433321  11122


Q ss_pred             cCCcccEEE
Q 047190          237 YSKSLEVID  245 (1025)
Q Consensus       237 ~~~~L~~L~  245 (1025)
                      .+|+|+.||
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            236666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.00072  Score=69.07  Aligned_cols=83  Identities=24%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECC
Q 047190          344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS  423 (1025)
Q Consensus       344 ~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  423 (1025)
                      +.+.|+.-+|.++ .+.-...++.|++|.|+-|+|+..-  .+..|++|++|+|..|.|...-....+.++|+|+.|.|.
T Consensus        20 ~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            4455555555554 2333456667777777777776443  366777888888888887754444456777777777777


Q ss_pred             CCcccc
Q 047190          424 DNSLTL  429 (1025)
Q Consensus       424 ~n~l~~  429 (1025)
                      .|+-.+
T Consensus        97 ENPCc~  102 (388)
T KOG2123|consen   97 ENPCCG  102 (388)
T ss_pred             cCCccc
Confidence            776443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.21  E-value=0.007  Score=37.09  Aligned_cols=18  Identities=56%  Similarity=0.905  Sum_probs=7.8

Q ss_pred             ccEEeCCCCcCCCcCcccc
Q 047190          801 LDFLDLSRNHFFGGIPSSL  819 (1025)
Q Consensus       801 L~~LdLs~N~l~g~ip~~l  819 (1025)
                      |++||||+|+++ .||.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.01  E-value=0.0086  Score=71.04  Aligned_cols=116  Identities=25%  Similarity=0.216  Sum_probs=77.0

Q ss_pred             cCCCCCcEEEccCCC-CCCCCCcccccCcccccccccccc-cCCCCc----chhccCCCCCCEEecccCCCCCCCCchhc
Q 047190          109 LKLQHLTYLDLSWNN-FSGSPIPEFIGSLGKLSELALSSA-QFAGPI----PHQLGNLSKLQVLDLRFNNLFSSGNLDWL  182 (1025)
Q Consensus       109 ~~l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~----p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l  182 (1025)
                      ...+.|+.|.+..+. +....+-.....+++|+.|+++++ ......    ......+++|+.|+++++...+......+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            347888888888763 332223355667889999999873 221111    23345678899999998873233334444


Q ss_pred             c-cCCCCCeeeccCCc-CCCCcchHHhhCCCCCCCEEEcCCCCCC
Q 047190          183 S-YLSSLRYLDLADCK-LSKFSNWVQVLSNLRSLTNLYLGYCDLP  225 (1025)
Q Consensus       183 ~-~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~  225 (1025)
                      . .+++|++|.+.++. +++. .+.....++++|++|++++|...
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccc
Confidence            4 48899999988776 4442 45566677899999999988754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.95  E-value=0.012  Score=69.70  Aligned_cols=115  Identities=23%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             cCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCC-CCCCCCC-CcccccccCCcccEEEccCCC-CCCCCchhhh
Q 047190          184 YLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC-DLPPIST-PSLLHINYSKSLEVIDLSNNY-LTNSIYPWLF  260 (1025)
Q Consensus       184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~  260 (1025)
                      .++.|+.|.+.++.-............++.|+.|+++++ ......+ ........+++|+.|+++++. +++.....+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666665532221113344555666666666652 1111111 001122222555555555554 3333333332


Q ss_pred             h-cCCCCccEEEcCCCC-CCCCchh-hhhCCCCCcEEEccCCC
Q 047190          261 N-VSSNLVDHIDLGSNQ-LHGSIPL-AFGHMASLRHLDLLSNQ  300 (1025)
Q Consensus       261 ~-l~~~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~Ls~n~  300 (1025)
                      . .+.  |++|.+..+. ++...-. ....++.|++|+++++.
T Consensus       266 ~~c~~--L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPN--LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCC--cceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            2 233  5555544444 3322111 22334455555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.78  E-value=0.013  Score=35.86  Aligned_cols=20  Identities=45%  Similarity=0.557  Sum_probs=13.3

Q ss_pred             CCeEeccCccccccCCCCCCC
Q 047190          777 LVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       777 L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                      |++|||++|+|+ .+|.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            567777777777 56665654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.76  E-value=0.0011  Score=76.59  Aligned_cols=61  Identities=31%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             CcEEEcccccccccc-----CCCCCC-CCCcEEEeecccccCccc----ccccccCCcceeeccCcccccc
Q 047190          345 LEWLYLAFNEITGTI-----PDLGGF-PSLQILSLENNRLTGTIS----KSIGQLSKLELLLLSGNSLRGV  405 (1025)
Q Consensus       345 L~~L~L~~n~l~~~~-----p~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~  405 (1025)
                      +..+++..|.+....     |.+..+ ..+++++++.|.|+....    ..+..++.++++.+++|.+...
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            444555555554221     123344 566777777777664433    3445567888888888887644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.21  E-value=0.0036  Score=72.45  Aligned_cols=36  Identities=42%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             CCcEEEccccccccccCC-----CCCCCCCcEEEeeccccc
Q 047190          344 SLEWLYLAFNEITGTIPD-----LGGFPSLQILSLENNRLT  379 (1025)
Q Consensus       344 ~L~~L~L~~n~l~~~~p~-----l~~l~~L~~L~L~~n~l~  379 (1025)
                      .+++++++.|.++..-..     +..++.++++.+++|.+.
T Consensus       263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            445555555555432221     334456666666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.69  E-value=0.24  Score=28.09  Aligned_cols=13  Identities=38%  Similarity=0.621  Sum_probs=4.6

Q ss_pred             CccEEeCCCCcCc
Q 047190          632 QLTLMDLGKNGLS  644 (1025)
Q Consensus       632 ~L~~L~Ls~N~l~  644 (1025)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.53  E-value=0.3  Score=27.75  Aligned_cols=15  Identities=47%  Similarity=0.709  Sum_probs=6.1

Q ss_pred             CCcEEEccCCCCCCc
Q 047190          290 SLRHLDLLSNQLREV  304 (1025)
Q Consensus       290 ~L~~L~Ls~n~l~~l  304 (1025)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.68  E-value=0.49  Score=30.22  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=15.2

Q ss_pred             CCCccEEeCCCCcCccccChhhh
Q 047190          630 GSQLTLMDLGKNGLSGEIPTWIG  652 (1025)
Q Consensus       630 l~~L~~L~Ls~N~l~g~ip~~~~  652 (1025)
                      +++|+.|+|++|+++ .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 6776655

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.68  E-value=0.49  Score=30.22  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=15.2

Q ss_pred             CCCccEEeCCCCcCccccChhhh
Q 047190          630 GSQLTLMDLGKNGLSGEIPTWIG  652 (1025)
Q Consensus       630 l~~L~~L~Ls~N~l~g~ip~~~~  652 (1025)
                      +++|+.|+|++|+++ .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 6776655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.78  E-value=0.11  Score=51.45  Aligned_cols=80  Identities=24%  Similarity=0.282  Sum_probs=37.7

Q ss_pred             ccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhccc-CCCCCeeeccCC-cCCCCcchHHhhCCCCCCCE
Q 047190          139 LSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY-LSSLRYLDLADC-KLSKFSNWVQVLSNLRSLTN  216 (1025)
Q Consensus       139 L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~-l~~L~~L~L~~n-~l~~~~~~~~~l~~l~~L~~  216 (1025)
                      ++.+|-++..|..+.-+.+.+++.++.|.+.+|.-+...-.+.+++ .++|+.|++++| +||+.  ....+..+++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHHhhhhHH
Confidence            3445555555544444455555555555555554322222222222 345666666655 34442  2334445555555


Q ss_pred             EEcC
Q 047190          217 LYLG  220 (1025)
Q Consensus       217 L~L~  220 (1025)
                      |.+.
T Consensus       181 L~l~  184 (221)
T KOG3864|consen  181 LHLY  184 (221)
T ss_pred             HHhc
Confidence            5444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.83  E-value=0.052  Score=54.49  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             CcEEEEECCCCCCCCCCcccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCC
Q 047190           82 GHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS  161 (1025)
Q Consensus        82 ~~v~~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~  161 (1025)
                      .+|+.||++..      .+. .+-.-++.++.|..||++.|.+.  .+|..++.+..++.+++..|..+ ..|.+++.++
T Consensus        42 kr~tvld~~s~------r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   42 KRVTVLDLSSN------RLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             ceeeeehhhhh------HHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence            36666776651      111 11233455666666677666665  35666666666666766666655 4666666666


Q ss_pred             CCCEEecccCC
Q 047190          162 KLQVLDLRFNN  172 (1025)
Q Consensus       162 ~L~~L~Ls~n~  172 (1025)
                      +++++++-+|.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            66666666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.01  E-value=0.053  Score=54.39  Aligned_cols=82  Identities=22%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             ceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECc
Q 047190          752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLS  831 (1025)
Q Consensus       752 ~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls  831 (1025)
                      ..+.||+|.|++-. .-..|.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.++...+.+.++++-
T Consensus        43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            44889999999852 3456777889999999999988 67888999999999999999988 568999999999999999


Q ss_pred             CCccc
Q 047190          832 YNNFS  836 (1025)
Q Consensus       832 ~N~l~  836 (1025)
                      .|+|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99875

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=84.88  E-value=0.13  Score=49.29  Aligned_cols=61  Identities=15%  Similarity=0.143  Sum_probs=51.4

Q ss_pred             heeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccccccCC
Q 047190          936 DWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNS 1000 (1025)
Q Consensus       936 ~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~~ 1000 (1025)
                      +|+..+++..|+......+.|...+|+           +.+++|+++|+|+|++|++    ++|++.+-.+.-+..
T Consensus        12 ~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~----S~w~~~E~~~a~~~~   83 (140)
T smart00255       12 EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAE----SEWCLDELVAALENA   83 (140)
T ss_pred             HHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECccccc----ChhHHHHHHHHHHHH
Confidence            577788999999988888999988888           6888999999999999999    777777777665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.71  E-value=0.75  Score=29.34  Aligned_cols=16  Identities=38%  Similarity=0.324  Sum_probs=10.0

Q ss_pred             CCccEEeCCCCcCCCc
Q 047190          799 KSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~  814 (1025)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666644

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.71  E-value=0.75  Score=29.34  Aligned_cols=16  Identities=38%  Similarity=0.324  Sum_probs=10.0

Q ss_pred             CCccEEeCCCCcCCCc
Q 047190          799 KSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~  814 (1025)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.81  E-value=0.41  Score=47.50  Aligned_cols=81  Identities=26%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             CCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc--CCC-CCCCCCcEEEeecc-cccCccccccc
Q 047190          312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI--PDL-GGFPSLQILSLENN-RLTGTISKSIG  387 (1025)
Q Consensus       312 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~--p~l-~~l~~L~~L~L~~n-~l~~~~p~~l~  387 (1025)
                      ..++.+|-+++.|..+.-+.+.+++       .++.|.+.+|.--+..  ..+ +-.++|+.|++++| +||+..-..+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~-------~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~  173 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLR-------SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL  173 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccc-------hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence            3566777777777666666666655       6777777666432111  001 13466777777766 45555445556


Q ss_pred             ccCCcceeeccC
Q 047190          388 QLSKLELLLLSG  399 (1025)
Q Consensus       388 ~l~~L~~L~L~~  399 (1025)
                      .+++|+.|.+.+
T Consensus       174 ~lknLr~L~l~~  185 (221)
T KOG3864|consen  174 KLKNLRRLHLYD  185 (221)
T ss_pred             HhhhhHHHHhcC
Confidence            666666666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1025
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-16
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		5e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		6e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		6e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		6e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		6e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		6e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 179/669 (26%), Positives = 261/669 (39%), Gaps = 112/669 (16%)
Query: 240 SLEVIDLSNNYLTNS-IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
           SLEV+DLS N ++ + +  W+ +     + H+ +  N++ G + ++     +L  LD+ S
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSS 206
Query: 299 NQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT 358
           N       FLG+ S+L+ L  S N+L G+ S  I   +        L+ L ++ N+  G 
Sbjct: 207 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE-------LKLLNISSNQFVGP 259
Query: 359 IPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLD 418
           IP L    SLQ LSL  N+ T                        G I + L     +L 
Sbjct: 260 IPPLP-LKSLQYLSLAENKFT------------------------GEIPDFLSGACDTLT 294
Query: 419 TLQLSDNSLTLKFSHDWTPPF-----------QLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
            L LS N       +   PPF              N F G   +       L        
Sbjct: 295 GLDLSGNHF-----YGAVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKV 344
Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK-LPDLSRKFDSYGPGIDVSSNQFD 526
           LD+S    S  +P+   +L+  L  L+LS+N   G  LP+L +   +    + + +N F 
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 527 GPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLPDCWFQFDSLA 586
           G I                                           G +P        L 
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLS----------------------GTIPSSLGSLSKLR 442
Query: 587 ILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGSQLTLMDLGKNGLSGE 646
            L L  N   GEIP  + +++++              PS   N + L  + L  N L+GE
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 647 IPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP--------K 698
           IP WIG  L NL +L L +N F GNIP +L     +  LDL+ N  +G IP        K
Sbjct: 503 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 699 CFHNFTA-----------MTKEKXXXXXXXXXXXXXXGLRGMLM-------PLIFFDTWK 740
              NF A           M KE               G+R   +       P        
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 741 GGQYEYK-SILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
           GG         G +  +D+S N L G + +EI  +  L  LNL +N+++G I   +G L+
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 800 SLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
            L+ LDLS N   G IP           +DLS NN SG IP+  Q + F  + +  NP L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 860 CGLPLPNKC 868
           CG PLP +C
Sbjct: 738 CGYPLP-RC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 179/669 (26%), Positives = 261/669 (39%), Gaps = 112/669 (16%)
Query: 240 SLEVIDLSNNYLTNS-IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
           SLEV+DLS N ++ + +  W+ +     + H+ +  N++ G + ++     +L  LD+ S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSS 209
Query: 299 NQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT 358
           N       FLG+ S+L+ L  S N+L G+ S  I   +        L+ L ++ N+  G 
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE-------LKLLNISSNQFVGP 262
Query: 359 IPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLD 418
           IP L    SLQ LSL  N+ T                        G I + L     +L 
Sbjct: 263 IPPLP-LKSLQYLSLAENKFT------------------------GEIPDFLSGACDTLT 297
Query: 419 TLQLSDNSLTLKFSHDWTPPF-----------QLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
            L LS N       +   PPF              N F G   +       L        
Sbjct: 298 GLDLSGNHF-----YGAVPPFFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKV 347
Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK-LPDLSRKFDSYGPGIDVSSNQFD 526
           LD+S    S  +P+   +L+  L  L+LS+N   G  LP+L +   +    + + +N F 
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 527 GPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLPDCWFQFDSLA 586
           G I                                           G +P        L 
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLS----------------------GTIPSSLGSLSKLR 445
Query: 587 ILNLANNSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGSQLTLMDLGKNGLSGE 646
            L L  N   GEIP  + +++++              PS   N + L  + L  N L+GE
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 647 IPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP--------K 698
           IP WIG  L NL +L L +N F GNIP +L     +  LDL+ N  +G IP        K
Sbjct: 506 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 699 CFHNFTA-----------MTKEKXXXXXXXXXXXXXXGLRGMLM-------PLIFFDTWK 740
              NF A           M KE               G+R   +       P        
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 741 GGQYEYK-SILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
           GG         G +  +D+S N L G + +EI  +  L  LNL +N+++G I   +G L+
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 800 SLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
            L+ LDLS N   G IP           +DLS NN SG IP+  Q + F  + +  NP L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 860 CGLPLPNKC 868
           CG PLP +C
Sbjct: 741 CGYPLP-RC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 106/274 (38%), Gaps = 51/274 (18%)
Query: 593 NSFFGEIPDSMSFLRSIXXXXXXXXXXXXXXPSFFMNGSQLTLMDLGKNGLSGEIPTWIG 652
           N+  G IP +++ L  +              P F      L  +D   N LSG +P  I 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHI-QILDLSLNNISGIIPKCFHNFTAMTKEKX 711
            SLPNLV ++   N+  G IP      S +   + +S N ++G IP  F N         
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------- 198
Query: 712 XXXXXXXXXXXXXGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771
                                                    +  +DLS N L G      
Sbjct: 199 -----------------------------------------LAFVDLSRNMLEGDASVLF 217
Query: 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPXXXXXXXXXXVMDLS 831
                   ++L+ N+L   +  ++G  K+L+ LDL  N  +G +P           +++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 832 YNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLP 865
           +NN  G+IP+G  LQRF  S YA N  LCG PLP
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN+LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN+LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R LT        LPP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRQLT-------ALPP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN+LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN+LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNQLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R+LT L       PP         +  K   ++ LS N L    
Sbjct: 5   CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 48
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 49  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 100
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 101 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN LT                          +   L + L +LDTL L +NSL  
Sbjct: 153 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 187
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 188 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 228

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R+LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R+LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRDLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRDLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNDLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 69/282 (24%)
Query: 196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-- 253
           C++SK ++ ++V  + R+LT L       PP         +  K   ++ LS N L    
Sbjct: 4   CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNM 311
             ++ P+      NL D  +L   Q+ G++P+       L  LDL  NQL+ +P     +
Sbjct: 48  LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD-LGGFPSLQ 369
            +L  L  S+N L         ++  G+ +    L+ LYL  NE+    P  L   P L+
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 370 ILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLTL 429
            LSL NN LT                          +   L + L +LDTL L +NSL  
Sbjct: 152 KLSLANNNLTE-------------------------LPAGLLNGLENLDTLLLQENSLYT 186
Query: 430 ---KFSHDWTPPFQLF--NIFLGSCKIGPRFPKWLQSQNQTV 466
               F      PF     N +L +C+I   F +WLQ   + V
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEIL-YFRRWLQDNAENV 227

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 116/259 (44%), Gaps = 26/259 (10%)
Query: 199 SKFSNWVQVLSNLRSLTN--------LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY 250
           ++FS  + V  NLR + +        L L    +  I   S  H+   + LE++ LS N+
Sbjct: 43  NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNH 99
Query: 251 LTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGN 310
           +  +I    FN  +NL + ++L  N+L      AF +++ L+ L L +N +  +P +  N
Sbjct: 100 I-RTIEIGAFNGLANL-NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
Query: 311 -MSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPDLGGFPSL 368
            + SL+RL        GEL   +  +S G+ +  S+L +L LA   +   IP+L     L
Sbjct: 158 RIPSLRRLDL------GELKR-LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKL 209
Query: 369 QILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXRGVISEALFSNLSSLDTLQLSDNSLT 428
             L L  N L+     S  Q                VI    F NL SL  + L+ N+LT
Sbjct: 210 DELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Query: 429 LKFSHD-WTPPFQLFNIFL 446
           L   HD +TP   L  I L
Sbjct: 269 L-LPHDLFTPLHHLERIHL 286

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           I T +  H+ +   LE++ LS N L   I    FN   +L + ++L  N+L      AF 
Sbjct: 50  IRTDTFKHLRH---LEILQLSKN-LVRKIEVGAFNGLPSL-NTLELFDNRLTTVPTQAFE 104
Query: 287 HMASLRHLDLLSNQLREVPKFLGN-MSSLKRLVFSYNELRGELS--EFIQNVSSGSTKNS 343
           +++ LR L L +N +  +P +  N + SL+RL        GEL   E+I   +     N 
Sbjct: 105 YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL------GELKRLEYISEAAFEGLVN- 157
Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXR 403
            L +L L    +   IP+L     L+ L L  NRL   I     Q               
Sbjct: 158 -LRYLNLGMCNLKD-IPNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHD-WTPPFQLFNIFL 446
             I    F +L SL+ L LS N+L +   HD +TP  +L  + L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           I T +  H+ +   LE++ LS N L   I    FN   +L + ++L  N+L      AF 
Sbjct: 50  IRTDTFKHLRH---LEILQLSKN-LVRKIEVGAFNGLPSL-NTLELFDNRLTTVPTQAFE 104
Query: 287 HMASLRHLDLLSNQLREVPKFLGN-MSSLKRLVFSYNELRGELS--EFIQNVSSGSTKNS 343
           +++ LR L L +N +  +P +  N + SL+RL        GEL   E+I   +     N 
Sbjct: 105 YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL------GELKRLEYISEAAFEGLVN- 157
Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQXXXXXXXXXXXXXXR 403
            L +L L    +   IP+L     L+ L L  NRL   I     Q               
Sbjct: 158 -LRYLNLGMCNLKD-IPNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHD-WTPPFQLFNIFL 446
             I    F +L SL+ L LS N+L +   HD +TP  +L  + L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLHRLERVHL 257

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 27/219 (12%)
Query: 109 LKLQHLTYLDLSWNN----FSGSPIP--EFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
           LKL+ L  L  + N     FS   +P  EF+       +L+ +   F G         + 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-------DLSRNGLSFKGCCSQSDFGTTS 374
Query: 163 LQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXADCK-LSKFSNWVQVLSNLRSLTNLYLGY 221
           L+ LDL FN + +  +               ++ K +S+FS    V  +LR+L      Y
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLI-----Y 425
Query: 222 CDLPPISTPSLLH--INYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG 279
            D+    T    +   N   SLEV+ ++ N    +  P +F    NL   +DL   QL  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQ 484
Query: 280 SIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRL 317
             P AF  ++SL+ L++ SNQL+ VP      ++SL+++
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1025
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  568 bits (1467), Expect = 0.0
 Identities = 229/860 (26%), Positives = 346/860 (40%), Gaps = 121/860 (14%)

Query: 34  SCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASS 93
             L  E   L++FK  L D   +L  W       N C + GV C +    V  +DL   S
Sbjct: 8   QSLYREIHQLISFKDVLPD-KNLLPDWSSNK---NPCTFDGVTCRD--DKVTSIDL---S 58

Query: 94  DSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPI 153
             P++     ++ SLL L  L  L LS ++ +GS +  F      L+ L LS    +GP+
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSRNSLSGPV 116

Query: 154 P--HQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLS-KFSNWVQVLSN 210
                LG+ S L+ L++  N L   G +     L+SL  LDL+   +S        +   
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 211 LRSLTNLYLGYCDL-PPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH 269
              L +L +    +   +            +LE +D+S+N  +  I P+L +  S L  H
Sbjct: 177 CGELKHLAISGNKISGDVDVSRC------VNLEFLDVSSNNFSTGI-PFLGD-CSALQ-H 227

Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELS 329
           +D+  N+L G    A      L+ L++                       S N+  G + 
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNI-----------------------SSNQFVGPIP 264

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIG 387
                         SL++L LA N+ TG IPD   G   +L  L L  N   G +    G
Sbjct: 265 PLP---------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG 447
             S LE L LS N+  G +       +  L  L LS N                      
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-------------------- 355

Query: 448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLP-D 506
                                       S  +P+   +L+  L  L+LS+N   G +  +
Sbjct: 356 ----------------------------SGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 507 LSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSL---NLSKNKFSGSI-SFLCSISSHLLT 562
           L +   +    + + +N F G IP    N S L   +LS N  SG+I S L S+S   L 
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--LR 445

Query: 563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG 622
            L L  N+L G +P       +L  L L  N   GEIP  +S   ++  +SL NN L+G 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 623 LPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHI 682
           +P +      L ++ L  N  SG IP  +G    +L+ L L +N F+G IP  +   S  
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQS-- 562

Query: 683 QILDLSLNNISGIIPKCFHNFTAMTK--EKSSNLSIISNYYYNLGLRGMLMPLIF-FDTW 739
               ++ N I+G       N     +     + L         L       P       +
Sbjct: 563 --GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 740 KGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
            G         G +  +D+S N L G + +EI  +  L  LNL +N+++G I   +G L+
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
            L+ LDLS N   G IP ++S L +L+ +DLS NN SG IP+  Q + F  + +  NP L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

Query: 860 CGLPLPNKCLDEESAPSPSR 879
           CG PLP          +  +
Sbjct: 741 CGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  290 bits (745), Expect = 6e-86
 Identities = 149/724 (20%), Positives = 243/724 (33%), Gaps = 98/724 (13%)

Query: 163 LQVLDLRFNNLFS-SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY 221
            +V D     L     +L      +++  L+L   +L +        +    LT+L +G+
Sbjct: 6   HEVADCSHLKLTQVPDDL-----PTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGF 58

Query: 222 CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI 281
             +  +       +     L+V++L +N L+  +    F   +NL   + L SN +    
Sbjct: 59  NTISKLEPELCQKL---PMLKVLNLQHNELS-QLSDKTFAFCTNLT-ELHLMSNSIQKIK 113

Query: 282 PLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST 340
              F    +L  LDL  N L          + +L+ L+ S N+++      +++      
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-----LKSEELDIF 168

Query: 341 KNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIG---QLSKLELLL 396
            NSSL+ L L+ N+I    P        L  L L N +L  ++++ +      + +  L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 397 LSGNSLRGVISEALFS-NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRF 455
           LS + L    +        ++L  L LS N+L                       +G   
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN---------------------VVGNDS 267

Query: 456 PKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYG 515
             WL          +    I  +       L N + YLNL  +  K  +           
Sbjct: 268 FAWLPQ---LEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSI----------- 312

Query: 516 PGIDVSSNQFDGPIPLL---PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
                S                 +  LN+  N   G  S + +   +L  YL LSN+  S
Sbjct: 313 -----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL-KYLSLSNSFTS 366

Query: 573 GR-LPDCWFQF---DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP-SFF 627
            R L +  F       L ILNL  N       D+ S+L  +  L L  N +   L    +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 628 MNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG--NIPFQLCYLSHIQIL 685
                +  + L  N             +P+L  L LR        + P     L ++ IL
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 686 DLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYE 745
           DLS NNI+ I          +       L +  N    L                GG   
Sbjct: 486 DLSNNNIANINDDMLEGLEKLE-----ILDLQHNNLARLWK----------HANPGGPIY 530

Query: 746 YKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLD 805
           +   L  + I++L SN      +E   DL  L  ++L  NNL            SL  L+
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 806 LSRNHFFGGIPSSLSR-LRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL----- 859
           L +N              R L+ +D+ +N F            +   T+   PEL     
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650

Query: 860 CGLP 863
           C  P
Sbjct: 651 CNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  279 bits (717), Expect = 4e-82
 Identities = 156/765 (20%), Positives = 271/765 (35%), Gaps = 118/765 (15%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL 173
               D S    +   +P+ +     ++ L L+  Q            S+L  LD+ FN +
Sbjct: 6   HEVADCSHLKLTQ--VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 174 FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLL 233
            S    +    L  L+ L+L   +LS+ S+  +  +   +LT L+L    +  I     +
Sbjct: 62  -SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 234 HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG--HMASL 291
                K+L  +DLS+N L+++       + +  +  + L +N++             +SL
Sbjct: 119 K---QKNLITLDLSHNGLSSTKLGTQVQLEN--LQELLLSNNKIQALKSEELDIFANSSL 173

Query: 292 RHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
           + L+L SNQ++E  P     +  L  L  +  +L   L+E +         N+S+  L L
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL----ELANTSIRNLSL 229

Query: 351 AFNEITGTIPDLGG---FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVIS 407
           + ++++ T         + +L +L L  N L    + S   L +LE   L  N+++ + S
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 408 EALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
            +    L ++  L L  +      S                  +        Q       
Sbjct: 290 HS-LHGLFNVRYLNLKRSFTKQSISL---------------ASLPKIDDFSFQWLKCLEH 333

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
           L++ +  I  I  + F  L N L YL+LSN+                     +++  F  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSL---------------RTLTNETFVS 377

Query: 528 PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLA 586
              L    +  LNL+KNK S   S   S   HL   LDL  N +   L    ++  +++ 
Sbjct: 378 ---LAHSPLHILNLTKNKISKIESDAFSWLGHL-EVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG--GLPSFFMNGSQLTLMDLGKNGLS 644
            + L+ N +     +S + + S+  L L   +L      PS F     LT++DL  N ++
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 645 GEIPTWIGESLPNLVVLSLRSNK--------FHGNIPFQLCYLSHIQILDLSLNNISGII 696
                 + E L  L +L L+ N           G   + L  LSH+ IL+L  N    I 
Sbjct: 494 NINDDML-EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 697 PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKII 756
            + F +                                                  +KII
Sbjct: 553 VEVFKDLFE-----------------------------------------------LKII 565

Query: 757 DLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI-TPRIGQLKSLDFLDLSRNHFFGGI 815
           DL  N L         + V L +LNL  N +T           ++L  LD+  N F    
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 816 PSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC 860
            S    +  ++    +    S      T     G      +   C
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC 670

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  263 bits (674), Expect = 4e-76
 Identities = 128/616 (20%), Positives = 214/616 (34%), Gaps = 51/616 (8%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           +         KL  L  L+L  N  S     +       L+EL L S        +    
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 160 LSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
              L  LDL  N L SS  L     L +L+ L L++ K+    +    +    SL  L L
Sbjct: 120 QKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 220 GYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL-VDHIDLGSNQLH 278
               +   S      I     L  + L+N  L  S+   L    +N  + ++ L ++QL 
Sbjct: 179 SSNQIKEFSPGCFHAI---GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 279 GSIPLAFGHMA--SLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNV 335
            +    F  +   +L  LDL  N L  V       +  L+     YN ++   S  +  +
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 336 SSGSTKNSS--LEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKL 392
            +    N         ++   +             L+ L++E+N + G  S     L  L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 393 ELLLLSGNSLRGV-ISEALFSNL--SSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
           + L LS +      ++   F +L  S L  L L+ N ++   S  ++    L  + LG  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 450 KIGPRFPKW-LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLS 508
           +IG        +       + +S      +  + F  + + L  L L    +K       
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS-LQRLMLRRVALKN------ 468

Query: 509 RKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSI-SFLCSISSHLLTYLDLS 567
                    +D S + F         N++ L+LS N  +      L  +    L  LDL 
Sbjct: 469 ---------VDSSPSPFQPL-----RNLTILDLSNNNIANINDDMLEGLEK--LEILDLQ 512

Query: 568 NNLLS--------GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSL 619
           +N L+        G           L ILNL +N F     +    L  +  + L  N+L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 620 SGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYL 679
           +    S F N   L  ++L KN ++       G +  NL  L +R N F           
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---A 629

Query: 680 SHIQILDLSLNNISGI 695
             +  ++ +  NI  +
Sbjct: 630 WFVNWINETHTNIPEL 645

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 1e-17
 Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 51/210 (24%)

Query: 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691
              + D     L+ ++P  +     N+ VL+L  N+            S +  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILG 751
           IS + P+                                                   L 
Sbjct: 61  ISKLEPELCQK-----------------------------------------------LP 73

Query: 752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811
           ++K+++L  N+L     +       L  L+L +N++         + K+L  LDLS N  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 812 FGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841
                 +  +L  L  + LS N       +
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 2e-11
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 93  SDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGP 152
           +     A  G     L  L HL  L+L  N F   P  E    L +L  + L        
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNTL 575

Query: 153 IPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA------DCK-LSKFSNWV 205
                 N   L+ L+L+ N + S     +     +L  LD+        C+ ++ F NW+
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

Query: 206 QVLSNLRSLTNLYLGYCDLPP 226
              ++           C+ PP
Sbjct: 636 N-ETHTNIPELSSHYLCNTPP 655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 2/102 (1%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           L             L  L+L  N  +      F  +   L+EL +    F          
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631

Query: 160 LSKLQVLDLRFNNLFSSGNLDWLSYLS--SLRYLDLADCKLS 199
           ++ +         L S    +   +     +R  D + CK S
Sbjct: 632 VNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDS 673

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  248 bits (635), Expect = 3e-71
 Identities = 87/658 (13%), Positives = 188/658 (28%), Gaps = 101/658 (15%)

Query: 54  SGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQH 113
           +   ++W    E        GV  ++  G V GL L            G +  ++ +L  
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFG------ASGRVPDAIGQLTE 106

Query: 114 LTYLDLSWNNFSGSP---IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
           L  L L  +    +     P+ I +     +       +               ++    
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 171 NNLFSSGNL-DWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIST 229
           N+     ++            +      ++  S     +  L  L   Y+G       + 
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSPFVAENI 223

Query: 230 PSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMA 289
                       E  +        +     ++   +L   +++ +      +P     + 
Sbjct: 224 CEAW--------ENENSEYAQQYKTE-DLKWDNLKDLT-DVEVYNCPNLTKLPTFLKALP 273

Query: 290 SLRHLDLLSNQLREVPKF---------LGNMSSLKRLVFSYNELR-GELSEFIQNVSSGS 339
            ++ +++  N+     +                ++ +   YN L+   +   +Q +    
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK-- 331

Query: 340 TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
                L  L   +N++ G +P  G    L  L+L  N++T   +   G   ++E L  + 
Sbjct: 332 -----LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           N L+ + +     ++S +  +  S N +                +               
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGS------VDGKNFDPL-----------DPTP 429

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519
                  ++++SN  IS    + F   +  L  +NL  N +                   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSP-LSSINLMGNMLTE----------------- 471

Query: 520 VSSNQFDGPIPLLP--PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD 577
           +  N              ++S++L  NK +       + +   L  +DLS N  S   P 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637
                 +L    + N                        N      P        LT + 
Sbjct: 531 QPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695
           +G N +  ++   I    PN+ VL ++ N         +C      +  L  +    I
Sbjct: 573 IGSNDIR-KVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  220 bits (562), Expect = 3e-61
 Identities = 96/730 (13%), Positives = 203/730 (27%), Gaps = 192/730 (26%)

Query: 123 NFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL 182
           +  G+     + S G+++ L+L     +G +P  +G L++L+VL L  +    +  L   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 183 SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLE 242
             +S+                                                    S E
Sbjct: 127 KGISANM--------------------------------------------------SDE 136

Query: 243 VIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR 302
                  +   +   +      + +    + S+    SI  +         +  LSN + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 303 EVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDL 362
            V K +  ++ L                                  Y+  +         
Sbjct: 197 FVSKAVMRLTKL-------------------------------RQFYMGNSPFVAENI-- 223

Query: 363 GGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQL 422
               + +  + E  +   T       L  L  + +        +   L   L  +  + +
Sbjct: 224 --CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINV 280

Query: 423 SDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI-VPD 481
           + N                        K   +         +   + +    +    V  
Sbjct: 281 ACNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 482 WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNL 541
               +   L  L    N+++GKLP    +                         ++SLNL
Sbjct: 325 SLQKMKK-LGMLECLYNQLEGKLPAFGSE-----------------------IKLASLNL 360

Query: 542 SKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF--QFDSLAILNLANNSF---- 595
           + N+ +   +  C  +  +   L  ++N L   +P+ +       ++ ++ + N      
Sbjct: 361 AYNQITEIPANFCGFTEQV-ENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 596 ---FGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG------- 645
              F  +  +     ++ S++L NN +S      F  GS L+ ++L  N L+        
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 646 EIPTWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFT 704
           +       +   L  + LR NK       F+   L ++  +DLS N+ S   P    N +
Sbjct: 479 DENENFK-NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSS 536

Query: 705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG 764
            +                                            G+    D   N+  
Sbjct: 537 TLKG-----------------------------------------FGIRNQRDAQGNRTL 555

Query: 765 GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL 824
            +  E I     L  L + +N++   +  +I    ++  LD+  N       S +     
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 825 LSVMDLSYNN 834
             +  L Y+ 
Sbjct: 613 AGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  184 bits (468), Expect = 5e-49
 Identities = 93/515 (18%), Positives = 169/515 (32%), Gaps = 66/515 (12%)

Query: 362 LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQ 421
           L     +  LSLE    +G +  +IGQL++LE+L L  +  +          +S+  + +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 422 LSDNSLTLKFSHDWTPPF------QLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGI 475
                  + +   +           L    + S        K  +   +   +   +  I
Sbjct: 137 QKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 476 SDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPN 535
           + +       LT  L    + N+    +               +    Q      L   N
Sbjct: 196 TFV-SKAVMRLTK-LRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTEDLKWDN 247

Query: 536 VSSL---NLSKNKFSGSI-SFLCSISSHLLTYLDLSNNLL--------SGRLPDCWFQFD 583
           +  L    +        + +FL ++    +  ++++ N            +        +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 584 SLAILNLANNSFF-GEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642
            + I+ +  N+     +  S+  ++ +G L    N L G LP+F  +  +L  ++L  N 
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG-SEIKLASLNLAYNQ 364

Query: 643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIP--FQLCYLSHIQILDLSLNNISGIIPKCF 700
           ++  IP         +  LS   NK    IP  F    +S +  +D S N I  +  K F
Sbjct: 365 ITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 701 HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
                 T  K  N+S I N   N  +       +F            S    +  I+L  
Sbjct: 423 DPLDP-TPFKGINVSSI-NLSNNQ-ISK-FPKELF------------STGSPLSSINLMG 466

Query: 761 NKLGG-------KVLEEIMDLVGLVALNLSNNNLTGQITP-RIGQLKSLDFLDLSRNHFF 812
           N L            E   +   L +++L  N LT      R   L  L  +DLS N  F
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-F 525

Query: 813 GGIP------SSLSRLRLLSVMDLSYNNFSGKIPK 841
              P      S+L    + +  D   N    + P+
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (333), Expect = 7e-32
 Identities = 52/443 (11%), Positives = 115/443 (25%), Gaps = 67/443 (15%)

Query: 406 ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
            +     +  +L  +  + N          T P   +N        G +    L S  + 
Sbjct: 24  RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRV 83

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF 525
             L +   G S  VPD    LT  L  L L ++  K                        
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTE-LEVLALGSHGEKV-------------NERLFGPKGI 129

Query: 526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSL 585
              +         ++  K      + +        L    ++++     +          
Sbjct: 130 SANMSDEQKQKMRMHYQKT----FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG 645
             +   +N+    +  ++  L  +    + N+                   +        
Sbjct: 186 TQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENIC-----EAWENENSEYAQQYK 239

Query: 646 EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTA 705
                   +L +L  + + +      +P  L  L  +Q+++++ N               
Sbjct: 240 TEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE--------- 289

Query: 706 MTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL-G 764
              +   +   +++                             +   I+II +  N L  
Sbjct: 290 ---QLKDDWQALADA---------------------------PVGEKIQIIYIGYNNLKT 319

Query: 765 GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL 824
             V   +  +  L  L    N L G++ P  G    L  L+L+ N       +       
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 825 LSVMDLSYNNFSGKIPKGTQLQR 847
           +  +  ++N     IP     + 
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 7e-19
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 13/211 (6%)

Query: 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSS-------AQFAGPIP 154
             ++P+  K  +++ ++LS N  S  P  E   +   LS + L                 
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 155 HQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSL 214
               N   L  +DLRFN L    +    + L  L  +DL+    SKF       S L+  
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274
                               I    SL  + + +N +   +   +     N+   +D+  
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT---PNIS-VLDIKD 596

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREVP 305
           N                    L  ++ +++ 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 28/123 (22%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSA------QFAGPIPHQLGNL 160
               L +L  +DLS+N+FS    P    +   L    + +       +     P  +   
Sbjct: 508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 161 SKLQVLDLRFN--------------------NLFSSGNLDWLSYLSSLRYLDLADCKLSK 200
             L  L +  N                    N   S +L ++          L   K   
Sbjct: 566 PSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

Query: 201 FSN 203
              
Sbjct: 626 IRG 628

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  246 bits (631), Expect = 6e-71
 Identities = 109/620 (17%), Positives = 202/620 (32%), Gaps = 53/620 (8%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
           P +  + ++TY      NF    IP+ +        L LS         +   +  +LQV
Sbjct: 2   PCVEVVPNITY-QCMELNFYK--IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           LDL    +  +        LS L  L L    +   +      S L SL  L     +L 
Sbjct: 57  LDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLA 113

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
            +    + H+   K+L+ +++++N + +   P  F+  +NL  H+DL SN++        
Sbjct: 114 SLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDL 169

Query: 286 GHMASLR----HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTK 341
             +  +      LDL  N +  +         L +L    N     + +           
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ------G 223

Query: 342 NSSLEWLYLAFNEITGTI----PDLGGFPSLQILSLENNRLT------GTISKSIGQLSK 391
            + LE   L   E          D      L  L++E  RL         I      L+ 
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 392 LELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI 451
           +    L   ++  V     FS       L+L +     +F        +       S K 
Sbjct: 284 VSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLT--FTSNKG 337

Query: 452 GPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKF 511
           G  F +      + + L  +            +  T+ L YL+LS N     +  +S  F
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFN----GVITMSSNF 392

Query: 512 DSYGP--GIDVSSNQFDGPIPLLP----PNVSSLNLSKNKFSGSISFLCSISSHLLTYLD 565
                   +D   +               N+  L++S      + + + +  S L   L 
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLK 451

Query: 566 LSNNLLSGRLPDCWFQ-FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP 624
           ++ N          F    +L  L+L+        P + + L S+  L++ +N+      
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 625 SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQ--LCYLSHI 682
             +   + L ++D   N +       +     +L  L+L  N F      Q  L ++   
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571

Query: 683 QILDLSLNNISGIIPKCFHN 702
           + L + +  +    P     
Sbjct: 572 RQLLVEVERMECATPSDKQG 591

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  240 bits (614), Expect = 1e-68
 Identities = 116/667 (17%), Positives = 219/667 (32%), Gaps = 120/667 (17%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
            S + LDL+   L    +      +   L  L L  C++  I   +   +     L  + 
Sbjct: 28  FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLI 82

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV- 304
           L+ N + +          S+L   +      L        GH+ +L+ L++  N ++   
Sbjct: 83  LTGNPIQSLALGAFSG-LSSLQ-KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 305 -PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLG 363
            P++  N+++L+ L  S N+++      ++ +            L L+ N +    P   
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ---MPLLNLSLDLSLNPMNFIQPGAF 197

Query: 364 GFPSLQILSLENNRLTGTISK-SIGQLSKLELLLLSGNSLRGV--ISEALFSNLSSLDTL 420
               L  L+L NN  +  + K  I  L+ LE+  L     R    + +   S L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 421 QLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP 480
            + +  L                                                 D + 
Sbjct: 258 TIEEFRLA------------------------------------------YLDYYLDDII 275

Query: 481 DWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLN 540
           D F  LTN +   +L +  ++  + D S  ++     +++ + +F     L   ++  L 
Sbjct: 276 DLFNCLTN-VSSFSLVSVTIER-VKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 541 LSKNKFSGSISFLCSISSHLLTYLDLSNNLLS--GRLPDCWFQFDSLAILNLANNSFFGE 598
            + NK   + S    +    L +LDLS N LS  G      F   SL  L+L+ N     
Sbjct: 332 FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 599 IPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
           +  +   L  +  L   +++L      S F++   L  +D+                L +
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSS 446

Query: 658 LVVLSLRSNKFHGNI-PFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI 716
           L VL +  N F  N  P     L ++  LDLS   +  + P  F++ ++           
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS----------- 495

Query: 717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVG 776
                                               ++++++S N            L  
Sbjct: 496 ------------------------------------LQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 777 LVALNLSNNNLTGQITPRIGQL-KSLDFLDLSRNHFFGGIPSS--LSRLRLLSVMDLSYN 833
           L  L+ S N++       +     SL FL+L++N F         L  ++    + +   
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

Query: 834 NFSGKIP 840
                 P
Sbjct: 580 RMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  222 bits (568), Expect = 3e-62
 Identities = 109/615 (17%), Positives = 186/615 (30%), Gaps = 116/615 (18%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
             S + +DLS N L   +  + F     L   +DL   ++      A+  ++ L  L L 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQ-VLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 298 SNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356
            N ++ +       +SSL++LV     L    +  I +         +L+ L +A N I 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-------LKTLKELNVAHNLIQ 137

Query: 357 GTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLL----LSGNSLRGVISEAL 410
                       +L+ L L +N++       +  L ++ LL     LS N +  +   A 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDV 470
                 L  L L +N  +L                 G           L+     +    
Sbjct: 198 --KEIRLHKLTLRNNFDSLNVMK---------TCIQGLAG--------LEVHRLVLGEFR 238

Query: 471 SNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIP 530
           +   +          L N L         +   L D+   F+                  
Sbjct: 239 NEGNLEKFDKSALEGLCN-LTIEEFRLAYLDYYLDDIIDLFNCL---------------- 281

Query: 531 LLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNL 590
               NVSS +L          F     +    +L+L N                L   + 
Sbjct: 282 ---TNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 591 ANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
              + F E+      L S+  L L  N LS  G         + L  +DL  NG+     
Sbjct: 336 KGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMT 707
            ++G  L  L  L  + +       F     L ++  LD+S  +        F+  ++  
Sbjct: 391 NFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-- 446

Query: 708 KEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKV 767
                                                        ++++ ++ N      
Sbjct: 447 ---------------------------------------------LEVLKMAGNSFQENF 461

Query: 768 LEEIM-DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLS 826
           L +I  +L  L  L+LS   L          L SL  L++S N+FF         L  L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 827 VMDLSYNNFSGKIPK 841
           V+D S N+      +
Sbjct: 522 VLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  193 bits (493), Expect = 2e-52
 Identities = 109/553 (19%), Positives = 195/553 (35%), Gaps = 79/553 (14%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           L    N  +  L+ L  L+++ N      +PE+  +L  L  L LSS +        L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 160 LSKLQV----LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKF--SNWVQVLSNLRS 213
           L ++ +    LDL  N +  +           L  L L +   S       +Q L+ L  
Sbjct: 172 LHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 214 LTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS--IYPWLFNVSSNLVDHID 271
              +   + +   +       +    +L + +    YL         LFN  +N+     
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS-SFS 288

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEF 331
           L S  +      ++      +HL+L++ +  + P     + SLKRL F+ N+     SE 
Sbjct: 289 LVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSE- 343

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEIT--GTIPD-LGGFPSLQILSLENNRLTGTISKSIGQ 388
                       SLE+L L+ N ++  G       G  SL+ L L  N +  T+S +   
Sbjct: 344 --------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGS 448
           L +LE L    ++L+ +   ++F +L +L  L +S     + F+  +     L  + +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 449 CKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLS 508
                                       + +PD F +L N L +L+LS  +++   P   
Sbjct: 455 NSF-----------------------QENFLPDIFTELRN-LTFLDLSQCQLEQLSPTAF 490

Query: 509 RKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
                                     ++  LN+S N F    +F     +  L  LD S 
Sbjct: 491 NSL----------------------SSLQVLNMSHNNFFSLDTFPYKCLNS-LQVLDYSL 527

Query: 569 NLLSGRLPDCWFQ-FDSLAILNLANNSFFGEIP--DSMSFLRSIGSLSLYNNSLSGGLPS 625
           N +             SLA LNL  N F         + +++    L +    +    PS
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

Query: 626 FFMNGSQLTLMDL 638
               G  +  +++
Sbjct: 588 -DKQGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 9e-41
 Identities = 64/347 (18%), Positives = 118/347 (34%), Gaps = 26/347 (7%)

Query: 87  LDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSS 146
           L +     + +D     I      L +++   L            +         L L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVN 313

Query: 147 AQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQ 206
            +F      +L +L +L     +  N FS  +      L SL +LDL+   LS      Q
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGLSFKGCCSQ 367

Query: 207 VLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL 266
                 SL  L L +  +  +S+  L      + LE +D  ++ L       +F    NL
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNEL 324
           + ++D+       +    F  ++SL  L +  N  +E  +P     + +L  L  S  +L
Sbjct: 424 I-YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 325 RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTIS 383
                    ++       SSL+ L ++ N              SLQ+L    N +  +  
Sbjct: 483 EQLSPTAFNSL-------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 384 KSIGQL-SKLELLLLSGNSLRGVIS-EALFSNLSSLDTLQLSDNSLT 428
           + +    S L  L L+ N        ++    +     L +    + 
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (320), Expect = 2e-30
 Identities = 70/322 (21%), Positives = 112/322 (34%), Gaps = 42/322 (13%)

Query: 78  SNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGS-PIPEFIGSL 136
           + K G    L L++       + KG    S + L  L +LDLS N  S      +     
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 137 GKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADC 196
             L  L LS       +      L +L+ LD + +NL           L +L YLD++  
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 197 KLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIY 256
                 N   + + L SL  L                            ++ N    +  
Sbjct: 432 HTRVAFN--GIFNGLSSLEVL---------------------------KMAGNSFQENFL 462

Query: 257 PWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLK 315
           P +F    NL   +DL   QL    P AF  ++SL+ L++  N    +       ++SL+
Sbjct: 463 PDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 316 RLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD---LGGFPSLQILS 372
            L +S N +     + +Q+        SSL +L L  N+   T      L      + L 
Sbjct: 522 VLDYSLNHIMTSKKQELQHF------PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 373 LENNRLTGTISKSIGQLSKLEL 394
           +E  R+          +  L L
Sbjct: 576 VEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 4e-28
 Identities = 65/347 (18%), Positives = 105/347 (30%), Gaps = 40/347 (11%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISS-HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNL 590
           LP +  +L+LS N      S+  S  S   L  LDLS   +       +     L+ L L
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 591 ANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTW 650
             N        + S L S+  L     +L+        +   L  +++  N +       
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 651 IGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI----LDLSLNNISGIIPKCFHNFTAM 706
              +L NL  L L SNK        L  L  + +    LDLSLN ++ I P  F      
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------ 197

Query: 707 TKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766
                  + +      N      +M                  L  +++  L   +   +
Sbjct: 198 -----KEIRLHKLTLRNNFDSLNVMKTCIQG------------LAGLEVHRLVLGEFRNE 240

Query: 767 VLEEIMD---LVGLVALNLSNNNLT------GQITPRIGQLKSLDFLDLSRNHFFGGIPS 817
              E  D   L GL  L +    L         I      L ++    L           
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 818 S-LSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 863
           S     + L +++  +  F     K  +   F ++          LP
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  231 bits (591), Expect = 1e-63
 Identities = 90/665 (13%), Positives = 191/665 (28%), Gaps = 101/665 (15%)

Query: 46  FKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTIN 105
           +  G I+ +    +W    E        GV   N  G V GL L           KG + 
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFG------AKGRVP 340

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            ++ +L  L  L    ++ + S        L                    L    +L +
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVL----SNLRSLTNLYLGY 221
            DL  + +  +  +     +     + L D ++   +N +  +      L  L  +Y   
Sbjct: 401 SDLLQDAINRNPEM---KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 222 CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI 281
                 +             E  +        +     ++   +L   ++L +      +
Sbjct: 458 SPFTYDNIAV--------DWEDANSDYAKQYENE-ELSWSNLKDLT-DVELYNCPNMTQL 507

Query: 282 PLAFGHMASLRHLDLLSNQLREV----------PKFLGNMSSLKRLVFSYNELRGELSEF 331
           P     +  L+ L++  N+                       ++     YN L     EF
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL----EEF 563

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQ-LS 390
             + S    K   L  L    N++   +   G    L  L L+ N++   I +       
Sbjct: 564 PASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619

Query: 391 KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCK 450
           ++E L  S N L+ + +     ++  + ++  S N +        +    +         
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-------SEGRNISC------- 665

Query: 451 IGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRK 510
                    +  N +  + +S   I     + F   +  +  + LSNN     +  +   
Sbjct: 666 ----SMDDYKGINAST-VTLSYNEIQKFPTELFATGSP-ISTIILSNN----LMTSIPEN 715

Query: 511 FDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570
                 G   ++             +++++L  NK +       + +   L+ +D+S N 
Sbjct: 716 SLKPKDGNYKNT-----------YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
            S   P        L    + +                        N +    P+     
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQ------------------RDAEGNRILRQWPTGITTC 805

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
             L  + +G N +  ++   +    P L +L +  N         +C      +  L  +
Sbjct: 806 PSLIQLQIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 691 NISGI 695
               I
Sbjct: 862 KTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (468), Expect = 5e-48
 Identities = 81/653 (12%), Positives = 172/653 (26%), Gaps = 106/653 (16%)

Query: 252 TNSIYPWLFNVSSNLVD-HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLG 309
               Y    N + + ++ + +   +       +   +   +  L L     +  VP  +G
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 310 NMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQ 369
            ++ LK L F  +        F     +          + + + ++            L 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 370 ILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL 429
             ++  N     I K      K   +    N +  +        L+ L  +  +++  T 
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKLQIIYFANSPFT- 461

Query: 430 KFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQ 489
                        +      K          +      +++ N      +PD+ +DL   
Sbjct: 462 ----YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE- 516

Query: 490 LYYLNLSNNEMKGKLPDLSRKFDSYGPGI---------DVSSNQFDG-PIPLLPPNVSSL 539
           L  LN++ N        L   +                 +  N  +  P       +  L
Sbjct: 517 LQSLNIACNRGIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575

Query: 540 ---NLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNLANNSF 595
              +   NK    +    +     LT L L  N +   +P+ +  F D +  L  ++N  
Sbjct: 576 GLLDCVHNKVR-HLEAFGTNVK--LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL 631

Query: 596 FGEIPDSMSF--LRSIGSLSLYNNSLSGGLPSFF-----MNGSQLTLMDLGKNGLSGEIP 648
              IP+  +   +  +GS+    N +     +         G   + + L  N +     
Sbjct: 632 -KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 649 TWIGESLPNLVVLSLRSNKF-------HGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
                +   +  + L +N                      +  +DL  N ++ +      
Sbjct: 691 ELFA-TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD---- 745

Query: 702 NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN 761
                           +     L                               +D+S N
Sbjct: 746 -------------DFRATTLPYL-----------------------------SNMDVSYN 763

Query: 762 KLGGKVLEEIMDLVGLVALNL------SNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGI 815
                   + ++   L A  +        N +  Q    I    SL  L +  N     +
Sbjct: 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKV 821

Query: 816 PSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGAST----YAGNPELCGLPL 864
              L     L ++D++ N     I   +      A      Y    ++ G   
Sbjct: 822 DEKL--TPQLYILDIADNPNIS-IDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (323), Expect = 2e-30
 Identities = 67/451 (14%), Positives = 131/451 (29%), Gaps = 85/451 (18%)

Query: 408 EALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
           +AL +   +LD      N      + + T     +N        G +    L +  +   
Sbjct: 272 KALKAIWEALD----GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTG 327

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
           L ++  G    VPD    LT  L  L+   +        L    +      +   ++   
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRM 385

Query: 528 PIPLL----PPNVSSLNLSKNKFS-----GSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
               +       ++  +L ++  +       I     IS       +L+N +    +   
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISKA 443

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
             +   L I+  AN+ F  +              +             + N   LT ++L
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG---------NIPFQLCYLSHIQILDLSL 689
                  ++P ++   LP L  L++  N+             +         IQI  +  
Sbjct: 499 YNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 690 NNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSI 749
           NN+                  S++L  +                                
Sbjct: 558 NNLEEFPA-------------SASLQKMVK------------------------------ 574

Query: 750 LGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ-LKSLDFLDLSR 808
              + ++D   NK+  + LE     V L  L L  N +  +I          ++ L  S 
Sbjct: 575 ---LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628

Query: 809 NHFFGGIPS--SLSRLRLLSVMDLSYNNFSG 837
           N     IP+  +   + ++  +D SYN    
Sbjct: 629 NK-LKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 6e-15
 Identities = 23/195 (11%), Positives = 54/195 (27%), Gaps = 19/195 (9%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFS------GSPIPEFIGSLGKLSELALSSAQFAG-P 152
           ++            ++ + LS N  +        P      +   L+ + L   +     
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 153 IPHQLGNLSKLQVLDLRFNNL----FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVL 208
              +   L  L  +D+ +N          N   L         D    ++ +       +
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP--TGI 802

Query: 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
           +   SL  L +G  D+  +    L        L ++D+++N   +     +       + 
Sbjct: 803 TTCPSLIQLQIGSNDIRKVD-EKLT-----PQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 269 HIDLGSNQLHGSIPL 283
            +     Q       
Sbjct: 857 VLLYDKTQDIRGCDA 871

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  226 bits (578), Expect = 1e-63
 Identities = 110/570 (19%), Positives = 189/570 (33%), Gaps = 52/570 (9%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
               L+ S+N         F   L  L+ L L+  Q          +  +L  L L  N 
Sbjct: 34  STECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
           L        LS   +L++L      +S        L N ++L +LYLG   +  I  P  
Sbjct: 93  L-IFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL-VDHIDLGSNQLHGSIPLAFGHMASL 291
                ++ L+V+D  NN +   +     +         ++L  N +   I       A  
Sbjct: 150 FP---TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVF 204

Query: 292 RHLDLLSNQ-LREVPKFLGN--MSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL 348
           + L+    Q L  + K L N  + SL    F   +        I           S+E +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-----ISPAVFEGLCEMSVESI 259

Query: 349 YLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVIS 407
            L  +       +    F  LQ L L    L+  +   +  LS L+ L+LS N    +  
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 408 EALFSNLSSLDTLQLSDNSLTLK-FSHDWTPPFQLFNIFLGSCKIG--PRFPKWLQSQNQ 464
            +  SN  SL  L +  N+  L+  +        L  + L    I         L++ + 
Sbjct: 319 IS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
             +L++S      +  + F +    L  L+L+   +K K                   + 
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKVKDAQ----------------SP 420

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-- 582
           F          +  LNLS +    S   L       L +L+L  N               
Sbjct: 421 FQN-----LHLLKVLNLSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 583 -DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
              L IL L+          + + L+ +  + L +N L+        +   + L +L  N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASN 533

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGN 671
            +S  +P+ +   L     ++LR N     
Sbjct: 534 HISIILPSLLP-ILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  222 bits (569), Expect = 2e-62
 Identities = 111/611 (18%), Positives = 197/611 (32%), Gaps = 92/611 (15%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
             S E ++ S N L  +I    F+   NL   +DL   Q++      F     L  L L 
Sbjct: 32  PNSTECLEFSFNVLP-TIQNTTFSRLINLT-FLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 298 SNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356
           +N L  + +  L    +LK L F    +       + N         +LE LYL  N I+
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-------QKTLESLYLGSNHIS 142

Query: 357 GTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLEL--LLLSGNSLRGVISEALFSN 413
                       L++L  +NN +     + +  L +     L L+GN + G+   A   +
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--D 200

Query: 414 LSSLDTLQLSDNSLTLKF--SHDWTPPFQLFNIFLGSCKIG--PRFPKWLQSQNQTVALD 469
            +   +L        L        +    L+                     +    +++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 470 VSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
           +      +I  + F   +  L  L+L+   +  +LP                        
Sbjct: 261 LQKHYFFNISSNTFHCFSG-LQELDLTATHLS-ELPSGLVGL------------------ 300

Query: 530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAIL 588
                 +  L LS NKF        S +   LT+L +  N     L     +  ++L  L
Sbjct: 301 ----STLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 589 NLANN--SFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGE 646
           +L+++           +  L  + SL+L  N         F    QL L+DL    L  +
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 647 IPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM 706
                 ++L  L VL+L  +    +       L  +Q L+L  N+      +  ++   +
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 707 TKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766
            +                                            ++I+ LS   L   
Sbjct: 476 GR--------------------------------------------LEILVLSFCDLSSI 491

Query: 767 VLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLS 826
                  L  +  ++LS+N LT      +  LK + +L+L+ NH    +PS L  L    
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550

Query: 827 VMDLSYNNFSG 837
            ++L  N    
Sbjct: 551 TINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (551), Expect = 5e-60
 Identities = 104/592 (17%), Positives = 197/592 (33%), Gaps = 61/592 (10%)

Query: 117 LDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSS 176
            +      +   IP  + +      L  S              L  L  LDL    ++  
Sbjct: 17  YNCENLGLNE--IPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 177 GNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHIN 236
              D       L  L L    L   +     LS  ++L +L+     +  I    L +  
Sbjct: 73  HE-DTFQSQHRLDTLVLTANPLIFMAE--TALSGPKALKHLFFIQTGISSIDFIPLHNQ- 128

Query: 237 YSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH--L 294
             K+LE + L +N+++ SI       +  L   +D  +N +H         +    +  L
Sbjct: 129 --KTLESLYLGSNHIS-SIKLPKGFPTEKLK-VLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 295 DLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNE 354
           +L  N +  +     + +  + L F   +    + + ++N     +   SL        +
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-----STIQSLWLGTFEDMD 239

Query: 355 ITGTIPDL---GGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF 411
                P +       S++ ++L+ +      S +    S L+ L L+   L  +   +  
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGL 297

Query: 412 SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVS 471
             LS+L  L LS N                         +         S      L + 
Sbjct: 298 VGLSTLKKLVLSANKFE---------------------NLCQISASNFPS---LTHLSIK 333

Query: 472 -NAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYG--PGIDVSSNQFDGP 528
            N    ++      +L N L  L+LS+++++      + +  +      +++S N+    
Sbjct: 334 GNTKRLELGTGCLENLEN-LRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 529 IPLLPPNVSSL---NLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSL 585
                     L   +L+  +     +     + HLL  L+LS++LL       +    +L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 586 AILNLANNSFFGEI---PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642
             LNL  N F        +S+  L  +  L L    LS      F +   +  +DL  N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG 694
           L+          L  +  L+L SN     +P  L  LS  + ++L  N +  
Sbjct: 512 LTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  190 bits (485), Expect = 2e-51
 Identities = 102/564 (18%), Positives = 174/564 (30%), Gaps = 98/564 (17%)

Query: 292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351
           +  +  +  L E+P  L   +S + L FS+N L    +     + +       L +L L 
Sbjct: 15  KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLIN-------LTFLDLT 65

Query: 352 FNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEAL 410
             +I     D       L  L L  N L      ++     L+ L      +  +     
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP- 124

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDV 470
             N  +L++L L  N ++   S      F    +                       LD 
Sbjct: 125 LHNQKTLESLYLGSNHIS---SIKLPKGFPTEKL---------------------KVLDF 160

Query: 471 SNAGISDIVPDWFWDLTN-QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
            N  I  +  +    L       LNL+ N++ G  P       +    ++    Q    I
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVI 218

Query: 530 P-----LLPPNVSSLNLSKNKFSGSISFLCSISSHL-LTYLDLSNNLLSGRLPDCWFQFD 583
                     ++                +      + +  ++L  +       + +  F 
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 584 SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL 643
            L  L+L       E+P  +  L ++  L L  N           N   LT + +  N  
Sbjct: 279 GLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 644 SGEIPTWIGESLPNLVVLSLRSNKFH--GNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
             E+ T   E+L NL  L L  +          QL  LSH+Q L+LS N    +  + F 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 702 NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN 761
                                                              ++++DL+  
Sbjct: 398 ECPQ-----------------------------------------------LELLDLAFT 410

Query: 762 KLGGKVLEEIM-DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGI---PS 817
           +L  K  +    +L  L  LNLS++ L          L +L  L+L  NHF  G     +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 818 SLSRLRLLSVMDLSYNNFSGKIPK 841
           SL  L  L ++ LS+ + S     
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (410), Expect = 1e-41
 Identities = 71/352 (20%), Positives = 125/352 (35%), Gaps = 36/352 (10%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
                + +      L  LDL+  + S   +P  +  L  L +L LS+ +F         N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 160 LSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
              L  L ++ N          L  L +LR LDL+   +         L NL  L +L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 220 GYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG 279
            Y +   + T +         LE++DL+   L        F     L   ++L  + L  
Sbjct: 384 SYNEPLSLKTEAFKEC---PQLELLDLAFTRLKVKDAQSPFQNLHLLK-VLNLSHSLLDI 439

Query: 280 SIPLAFGHMASLRHLDLLSNQLREV----PKFLGNMSSLKRLVFSYNELRGELSEFIQNV 335
           S    F  + +L+HL+L  N   +        L  +  L+ LV S+ +L         ++
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 336 SSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELL 395
                    +  + L+ N +T +  +         L+L +N ++  +   +  LS+   +
Sbjct: 500 KM-------MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTI 552

Query: 396 LLSGNSLRGV-------------------ISEALFSNLSSLDTLQLSDNSLT 428
            L  N L                        + L  N   L  ++LSD +L+
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (330), Expect = 1e-31
 Identities = 77/485 (15%), Positives = 140/485 (28%), Gaps = 133/485 (27%)

Query: 369 QILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           +  + EN  L   I  ++   +  E L  S N L  + +   FS L +L  L L+     
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQ-- 68

Query: 429 LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTN 488
                                                         I  I  D F     
Sbjct: 69  ----------------------------------------------IYWIHEDTFQSQHR 82

Query: 489 QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSG 548
            L  L L+ N +                   ++     GP       +  L   +   S 
Sbjct: 83  -LDTLVLTANPLIF-----------------MAETALSGP-----KALKHLFFIQTGISS 119

Query: 549 SI-SFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR 607
                L +  +  L  L L +N +S       F  + L +L+  NN+      + MS L+
Sbjct: 120 IDFIPLHNQKT--LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 608 SIGSLSLY--NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI-GESLPNLVVLSLR 664
              +LSL    N ++G +     + +    ++ G       I   +   ++ +L + +  
Sbjct: 178 QATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 665 SNKFHGNIP--FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYY 722
                   P  F+      ++ ++L  +    I    FH F+                  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG----------------- 279

Query: 723 NLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNL 782
                                         ++ +DL++  L  ++   ++ L  L  L L
Sbjct: 280 ------------------------------LQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 783 SNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPS-SLSRLRLLSVMDLSYNNFSGKIPK 841
           S N              SL  L +  N     + +  L  L  L  +DLS+++       
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 842 GTQLQ 846
             QL+
Sbjct: 369 NLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 3e-17
 Identities = 43/263 (16%), Positives = 65/263 (24%), Gaps = 52/263 (19%)

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGE 646
             N  N     EIP +     S   L    N L     + F     LT +DL +  +   
Sbjct: 16  TYNCENLGLN-EIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 647 IPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM 706
                  S   L  L L +N         L     ++ L      IS I     HN    
Sbjct: 73  HEDTFQ-SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT- 130

Query: 707 TKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766
                                                         ++ + L SN +   
Sbjct: 131 ----------------------------------------------LESLYLGSNHISSI 144

Query: 767 VLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH-FFGGIPSSLSRLRLL 825
            L +      L  L+  NN +       +  L+    L L+ N     GI        + 
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 826 SVMDLSYNNFSGKIPKGTQLQRF 848
             ++         I KG +    
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTI 227

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  208 bits (532), Expect = 1e-60
 Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 30/307 (9%)

Query: 564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE--IPDSMSFLRSIGSLSLYN-NSLS 620
            D  N    G L D   Q   +  L+L+  +      IP S++ L  +  L +   N+L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS 680
           G +P      +QL  + +    +SG IP ++   +  LV L    N   G +P  +  L 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWK 740
           ++  +    N ISG IP  + +F+ +     ++++I  N      L G + P        
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKL----FTSMTISRNR-----LTGKI-P-------- 191

Query: 741 GGQYEYKSILGL-IKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
                  +   L +  +DLS N L G              ++L+ N+L   +  ++G  K
Sbjct: 192 ------PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244

Query: 800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
           +L+ LDL  N  +G +P  L++L+ L  +++S+NN  G+IP+G  LQRF  S YA N  L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

Query: 860 CGLPLPN 866
           CG PLP 
Sbjct: 305 CGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (488), Expect = 2e-54
 Identities = 86/374 (22%), Positives = 144/374 (38%), Gaps = 81/374 (21%)

Query: 35  CLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCC--KWRGVRCSNKTGHVLGLDLRAS 92
           C  ++K++LL  K+ L + +  LSSW       +CC   W GV C   T           
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDT----------- 47

Query: 93  SDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGS-PIPEFIGSLGKLSELALSSA-QFA 150
                            +   +  LDLS  N     PIP  + +L  L+ L +       
Sbjct: 48  -----------------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 151 GPIPHQLGNLSKLQVLDLRFNNLFSSGNL-DWLSYLSSLRYLDLADCKLSKFSNWVQVLS 209
           GPIP  +  L++L  L +   N+  SG + D+LS + +L  LD +   LS        +S
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALS--GTLPPSIS 146

Query: 210 NLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH 269
           +L +L  +                               N ++ +I     + S  L   
Sbjct: 147 SLPNLVGI---------------------------TFDGNRISGAIPDSYGSFSK-LFTS 178

Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNMSSLKRLVFSYNELRGEL 328
           + +  N+L G IP  F ++ +L  +DL  N L  +     G+  + +++  + N L  +L
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIG 387
            +           + +L  L L  N I GT+P  L     L  L++  N L G I +  G
Sbjct: 238 GKVGL--------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288

Query: 388 QLSKLELLLLSGNS 401
            L + ++   + N 
Sbjct: 289 NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (396), Expect = 3e-42
 Identities = 72/372 (19%), Positives = 124/372 (33%), Gaps = 99/372 (26%)

Query: 264 SNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR---EVPKFLGNMSSLKRLVFS 320
           S+ +   D  +    G +         + +LDL    L     +P  L N+  L  L   
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLT 379
                                           N + G IP  +     L  L + +  ++
Sbjct: 85  GI------------------------------NNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 380 GTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPF 439
           G I   + Q+  L  L  S N+L G +  ++ S+L +L  +    N ++           
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRIS----------- 162

Query: 440 QLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE 499
                  G+                              +PD +   +     + +S N 
Sbjct: 163 -------GA------------------------------IPDSYGSFSKLFTSMTISRNR 185

Query: 500 MKGKLPD----LSRKFDSYGPGIDVSSNQFDGPIPLL---PPNVSSLNLSKNKFSGSISF 552
           + GK+P     L+  F      +D+S N  +G   +L     N   ++L+KN  +  +  
Sbjct: 186 LTGKIPPTFANLNLAF------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 553 LCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL 612
           +    +  L  LDL NN + G LP    Q   L  LN++ N+  GEIP   +  +     
Sbjct: 240 VGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-QRFDVS 296

Query: 613 SLYNNSLSGGLP 624
           +  NN    G P
Sbjct: 297 AYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (362), Expect = 9e-38
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 35/259 (13%)

Query: 466 VALDVSNAGIS--DIVPDWFWDLTNQLYYLNLSN-NEMKG-------KLPDLSRKFDSYG 515
             LD+S   +     +P    +L   L +L +   N + G       KL  L        
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHY------ 105

Query: 516 PGIDVSSNQFDGPIP-----LLPPNVSSLNLSKNKFSGSI-SFLCSISSHLLTYLDLSNN 569
             + ++     G IP     +    + +L+ S N  SG++   + S+ +  L  +    N
Sbjct: 106 --LYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISSLPN--LVGITFDGN 159

Query: 570 LLSGRLPDCWFQFDSLA-ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFM 628
            +SG +PD +  F  L   + ++ N   G+IP + + L ++  + L  N L G     F 
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218

Query: 629 NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLS 688
           +      + L KN L+ ++         NL  L LR+N+ +G +P  L  L  +  L++S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 689 LNNISGIIPK--CFHNFTA 705
            NN+ G IP+      F  
Sbjct: 277 FNNLCGEIPQGGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.1 bits (157), Expect = 5e-11
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           L   +   +   ++L  LDL  N   G+ +P+ +  L  L  L +S     G IP Q GN
Sbjct: 233 LAFDL-GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 160 LSKLQVLDLRFNNLFSSGNL 179
           L +  V     N       L
Sbjct: 290 LQRFDVSAYANNKCLCGSPL 309

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (540), Expect = 1e-58
 Identities = 110/601 (18%), Positives = 201/601 (33%), Gaps = 53/601 (8%)

Query: 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS 161
           G++NP +  + ++T         S   +P+ I S      + LS         +   N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSK--VPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY 221
           +LQ LDL    + +  +      L  L  L L    +  FS      S L SL NL    
Sbjct: 57  ELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSP--GSFSGLTSLENLVAVE 113

Query: 222 CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI 281
             L  + +  +  +    +L+ +++++N++ +   P  F+  +NLV H+DL  N +    
Sbjct: 114 TKLASLESFPIGQL---ITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTIT 169

Query: 282 PLAFGHMASLR----HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSS 337
                 +         LD+  N +  +         L  L    N     + +      +
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 338 GSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQI--LSLENNRLTGTISKSIGQLSKLEL 394
           G   +  +   +     +    P  + G   + I    L               L+ +  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPR 454
           + L+G S++ +             +L +    L    + D      L ++ L   K    
Sbjct: 290 MSLAGVSIKYLED---VPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMNKGSIS 343

Query: 455 FPKWLQSQNQTVALDVSNAGISDIVPDWFWDL-TNQLYYLNLSNNEMKGKLPDLSRKFDS 513
           F K          LD+S   +S      + DL TN L +L+LS N               
Sbjct: 344 FKKVALPSLSY--LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--------------- 386

Query: 514 YGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSG 573
              G  + S  F G        +  L+   +       F   +S   L YLD+S      
Sbjct: 387 ---GAIIMSANFMG-----LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 574 RLPDCWFQFDSLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQ 632
                +    SL  L +A NSF      ++ +   ++  L L    L       F    +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNI 692
           L L+++  N L     +     L +L  L    N+   +      +   +   +L+ N++
Sbjct: 499 LQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 693 S 693
           +
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (524), Expect = 2e-56
 Identities = 121/653 (18%), Positives = 201/653 (30%), Gaps = 128/653 (19%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
           SS + +DL+   L    +     SN   L  L L  C++  I   +   +     L  + 
Sbjct: 32  SSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGL---HHLSNLI 86

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV- 304
           L+ N +  S  P  F+  ++L  ++     +L        G + +L+ L++  N +    
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLE-NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 305 -PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLG 363
            P +  N+++L  +  SYN ++      +Q +                            
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP------------------------ 180

Query: 364 GFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS 423
                  L +  N +   I     Q  KL  L L GN     I +    NL+ L   +L 
Sbjct: 181 --QVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWF 483
                  F  +        +I  G C +                  ++           F
Sbjct: 238 LGE----FKDERNLEIFEPSIMEGLCDV------------TIDEFRLTYTNDFSDDIVKF 281

Query: 484 WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543
             L N +  ++L+   +K  L D+          + +   Q      L  P + SL L+ 
Sbjct: 282 HCLAN-VSAMSLAGVSIK-YLEDVP--KHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTM 337

Query: 544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSM 603
           NK S S   +   S   L+YLDLS N LS                      F G    S 
Sbjct: 338 NKGSISFKKVALPS---LSYLDLSRNALS----------------------FSGCCSYSD 372

Query: 604 SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSL 663
               S+  L L  N     + + FM   +L  +D   + L          SL  L+ L +
Sbjct: 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 664 RSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYN 723
                  +       L+ +  L ++ N+           F   T                
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FANTTN--------------- 474

Query: 724 LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS 783
                                        +  +DLS  +L          L  L  LN+S
Sbjct: 475 -----------------------------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 784 NNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
           +NNL    +    QL SL  LD S N             + L+  +L+ N+ +
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (477), Expect = 2e-50
 Identities = 89/553 (16%), Positives = 173/553 (31%), Gaps = 76/553 (13%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           ++   + +   L HL+ L L+ N       P     L  L  L     + A      +G 
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 160 LSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWV-QVLSNLR-SLTNL 217
           L  L+ L++  N + S     + S L++L ++DL+   +   +    Q L        +L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 218 YLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN-----LVDHIDL 272
            +    +  I   +   I     L  + L  N+ +++I        +      L+     
Sbjct: 187 DMSLNPIDFIQDQAFQGIK----LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 273 GSNQLHGSIPLAFGHMASLR--HLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELS 329
               L    P     +  +      L               ++++  +  +   +     
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI----- 297

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQL 389
                      K+   + L +   ++    P L   P L+ L+L  N+   +IS     L
Sbjct: 298 ----KYLEDVPKHFKWQSLSIIRCQLK-QFPTL-DLPFLKSLTLTMNKG--SISFKKVAL 349

Query: 390 SKLELLLLSGNSLRGVISEAL-FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGS 448
             L  L LS N+L      +      +SL  L LS N   +                   
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------- 390

Query: 449 CKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLS 508
                          +   LD  ++ +  +     +    +L YL++S    K     + 
Sbjct: 391 ------MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI- 443

Query: 509 RKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
                           F G       ++++L ++ N F  +       ++  LT+LDLS 
Sbjct: 444 ----------------FLG-----LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 569 NLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFM 628
             L       +     L +LN+++N+         + L S+ +L    N +         
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 629 NGSQLTLMDLGKN 641
               L   +L  N
Sbjct: 543 FPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  179 bits (455), Expect = 2e-47
 Identities = 99/581 (17%), Positives = 175/581 (30%), Gaps = 88/581 (15%)

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGE 327
                  +L   +P      +S +++DL  N L+ +  +   N S L+ L  S  E+   
Sbjct: 15  TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 328 LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSI 386
             +    +         L  L L  N I    P    G  SL+ L     +L    S  I
Sbjct: 72  EDKAWHGLHH-------LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT----LKFSHDWTPPFQLF 442
           GQL  L+ L ++ N +      A FSNL++L  + LS N +              P    
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 443 NIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG 502
           ++ +    I            +   L +     S  +          L+   L   E K 
Sbjct: 185 SLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 503 KLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLT 562
              +L               +  +G   L    +    L+               +++ +
Sbjct: 244 -ERNLE----------IFEPSIMEG---LCDVTIDEFRLTYTNDFSDDIVKFHCLANV-S 288

Query: 563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG 622
            + L+   +   L D    F     L++            + FL+S   L+L  N  S  
Sbjct: 289 AMSLAGVSIK-YLEDVPKHF-KWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKGSIS 343

Query: 623 LPSFFMNGSQLTLMDLGKNGLSGEIP-TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSH 681
                +    L+ +DL +N LS     ++      +L  L L  N     +      L  
Sbjct: 344 FKKVAL--PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEE 400

Query: 682 IQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG 741
           +Q LD   + +  +    F  F ++ K                                 
Sbjct: 401 LQHLDFQHSTLKRVTE--FSAFLSLEK--------------------------------- 425

Query: 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI-GQLKS 800
                      +  +D+S            + L  L  L ++ N+        +     +
Sbjct: 426 -----------LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841
           L FLDLS+             L  L ++++S+NN       
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (421), Expect = 4e-43
 Identities = 100/564 (17%), Positives = 169/564 (29%), Gaps = 123/564 (21%)

Query: 293 HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAF 352
               +  +L +VP  +   SS K +  S+N L+   S    N S        L+WL L+ 
Sbjct: 15  TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE-------LQWLDLSR 65

Query: 353 NEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF 411
            EI         G   L  L L  N +      S   L+ LE L+     L  + S    
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-I 124

Query: 412 SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVS 471
             L +L  L ++ N +                          + P +  +    V +D+S
Sbjct: 125 GQLITLKKLNVAHNFIH-----------------------SCKLPAYFSNLTNLVHVDLS 161

Query: 472 NAGISDIVPDWFWDLTN---QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGP 528
              I  I  +    L         L++S N +                   +    F G 
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-----------------IQDQAFQGI 204

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLA-- 586
                  +  L L  N  S +I   C  +   L    L             F+   +   
Sbjct: 205 ------KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 587 ------ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640
                    L   + F +       L ++ ++SL   S+            +   + + +
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH--FKWQSLSIIR 316

Query: 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCF 700
             L  + PT     LP L  L+L  NK  G+I F+   L  +  LDLS N +S      +
Sbjct: 317 CQLK-QFPT---LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 701 HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
            +        +++L                                       + +DLS 
Sbjct: 371 SDL------GTNSL---------------------------------------RHLDLSF 385

Query: 761 NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR-IGQLKSLDFLDLSRNHFFGGIPSSL 819
           N     +    M L  L  L+  ++ L           L+ L +LD+S  +         
Sbjct: 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 820 SRLRLLSVMDLSYNNFSGKIPKGT 843
             L  L+ + ++ N+F        
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 51/185 (27%)

Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712
           E +PN+        K    +P  +   S  + +DLS N +  +    F NF+        
Sbjct: 9   EVVPNITY-QCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE------- 57

Query: 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM 772
                                                   ++ +DLS  ++     +   
Sbjct: 58  ----------------------------------------LQWLDLSRCEIETIEDKAWH 77

Query: 773 DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY 832
            L  L  L L+ N +          L SL+ L              + +L  L  +++++
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 833 NNFSG 837
           N    
Sbjct: 138 NFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 1/83 (1%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           L+         L  L  L++S NN            L  LS L  S  +           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 160 LSKLQVLDLRFNNLFSSGNLDWL 182
              L   +L  N++         
Sbjct: 544 PKSLAFFNLTNNSVACICEHQKF 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  184 bits (469), Expect = 3e-48
 Identities = 123/606 (20%), Positives = 202/606 (33%), Gaps = 86/606 (14%)

Query: 117 LDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSS 176
               + N +   +P+    L     L LS              L +LQ+L+L       +
Sbjct: 9   AFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 177 GNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHIN 236
            + +    L +LR LDL   K+            L  L  L L +C L            
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDGY-FR 120

Query: 237 YSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG--HMASLRHL 294
             K+L  +DLS N + +      F   ++L   ID  SNQ+              +L   
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 295 DLLSNQLREVPK--FLGNMS-----SLKRLVFSYNELRGELSEFIQNVSSGSTKNS---- 343
            L +N L       +   M+      L+ L  S N    +++    N  S S   S    
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 344 -SLEWLYLAFNEITGTIPDL---GGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
             +      F+ I     +        S++ L L +  +    S+    L  L++L L+ 
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           N +   I++  F  L +L  L LS N L                           +    
Sbjct: 300 NKINK-IADEAFYGLDNLQVLNLSYNLLGE------------------------LYSSNF 334

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519
               +   +D+    I+ I    F  L   L  L+L +N +   +  +    D     I 
Sbjct: 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALT-TIHFIPSIPD-----IF 387

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSG--SISFLCSISSHLLTYLDLSNNLLSGRLPD 577
           +S N+    +P +    + ++LS+N+      + FL  +    L  L L+ N  S    D
Sbjct: 388 LSGNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPH--LQILILNQNRFSSCSGD 444

Query: 578 CWFQ-FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM 636
                  SL  L L  N                    L     +      F   S L ++
Sbjct: 445 QTPSENPSLEQLFLGEN-------------------MLQLAWETELCWDVFEGLSHLQVL 485

Query: 637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGII 696
            L  N L+  +P  +   L  L  LSL SN+        L   ++++ILD+S N +    
Sbjct: 486 YLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPN 542

Query: 697 PKCFHN 702
           P  F +
Sbjct: 543 PDVFVS 548

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (453), Expect = 3e-46
 Identities = 148/770 (19%), Positives = 263/770 (34%), Gaps = 134/770 (17%)

Query: 193 LADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLT 252
           +A  +    +   QV   L +   L L +  +  ++  S   +   + L++++L + Y  
Sbjct: 8   IAFYRFCNLT---QVPQVLNTTERLLLSFNYIRTVTASSFPFL---EQLQLLELGSQYTP 61

Query: 253 NSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV---PKFLG 309
            +I    F    NL   +DLGS++++   P AF  +  L  L L    L +      +  
Sbjct: 62  LTIDKEAFRNLPNLR-ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 310 NMSSLKRLVFSYNELRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEIT----GTIPDLGG 364
           N+ +L RL  S N++R   L      +       +SL+ +  + N+I       +  L G
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKL-------NSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSK------LELLLLSGNSLRGVISEALFSNLSSLD 418
             +L   SL  N L   +S   G+         LE+L +SGN     I+    + +S   
Sbjct: 174 -KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 419 TLQLSDN----SLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAG 474
              L            F +   P     N F G  +   R             LD+S+  
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPD---QNTFAGLARSSVRH------------LDLSHGF 277

Query: 475 ISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPP 534
           +  +    F  L + L  LNL+ N++                   ++   F G       
Sbjct: 278 VFSLNSRVFETLKD-LKVLNLAYNKIN-----------------KIADEAFYG-----LD 314

Query: 535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS 594
           N+  LNLS N     +          + Y+DL  N ++      +   + L  L+L +N+
Sbjct: 315 NLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 595 FFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGES 654
                  ++ F+ SI  + L  N L   LP   +  + +    L +N L      +    
Sbjct: 374 L-----TTIHFIPSIPDIFLSGNKLV-TLPKINLTANLI---HLSENRLENLDILYFLLR 424

Query: 655 LPNLVVLSLRSNKFHGNIPFQLCY-LSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN 713
           +P+L +L L  N+F      Q       ++ L L  N +                     
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW----------- 473

Query: 714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD 773
                                  D ++G        L  ++++ L+ N L          
Sbjct: 474 -----------------------DVFEG--------LSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833
           L  L  L+L++N LT           +L+ LD+SRN      P     L    V+D+++N
Sbjct: 503 LTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVSLS---VLDITHN 557

Query: 834 NFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAYYTPDDDGDQF 893
            F  +     +L  F       N  + G P    C+  +S    S         D+ +  
Sbjct: 558 KFICEC----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

Query: 894 ITLGFYMSMI-LGFFVGFWGVCGTLLVKSSWRHGYYNFLTRVKDWLYVEA 942
            +L F + ++       F     T+     +    Y    R+    + + 
Sbjct: 614 KSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQG 663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (430), Expect = 2e-43
 Identities = 119/621 (19%), Positives = 211/621 (33%), Gaps = 77/621 (12%)

Query: 100 LKGTINPSLLK-LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPI--PHQ 156
              TI+    + L +L  LDL  +         F G L  L EL L     +  +     
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGY 118

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR--SL 214
             NL  L  LDL  N + S         L+SL+ +D +  ++         L  L+  +L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE--HELEPLQGKTL 176

Query: 215 TNLYLGYCDL---PPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
           +   L    L     +     ++   +  LE++D+S N  T  I                
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI--------------TG 222

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK--FLG-NMSSLKRLVFSYNELRGEL 328
             SN +  S   +      +       + +++  +  F G   SS++ L  S+  +    
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIG 387
           S   +           L+ L LA+N+I     +   G  +LQ+L+L  N L    S +  
Sbjct: 283 SRVFET-------LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG 447
            L K+  + L  N +  +I +  F  L  L TL L DN+LT            + +IFL 
Sbjct: 336 GLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLS 389

Query: 448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDL 507
             K+       L +      + +S   + ++   +F      L  L L+ N         
Sbjct: 390 GNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQILILNQNRFS------ 439

Query: 508 SRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSI--SFLCSISSHL--LTY 563
                        S +Q         P++  L L +N    +        +   L  L  
Sbjct: 440 -----------SCSGDQTPS----ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL 623
           L L++N L+   P  +    +L  L+L +N     +  +     ++  L +  N L    
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLLAPN 542

Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683
           P  F++   L+++D+  N    E       +  N   +++                S + 
Sbjct: 543 PDVFVS---LSVLDITHNKFICECELSTFINWLNHTNVTIAGP-PADIYCVYPDSFSGVS 598

Query: 684 ILDLSLNNISGIIPKCFHNFT 704
           +  LS              F+
Sbjct: 599 LFSLSTEGCDEEEVLKSLKFS 619

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (352), Expect = 8e-34
 Identities = 80/388 (20%), Positives = 144/388 (37%), Gaps = 41/388 (10%)

Query: 98  DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIG-SLGKLSELALSSAQFAGPIPHQ 156
           +A+  +   SL+   H+      ++N        F G +   +  L LS           
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
              L  L+VL+L +N +    + +    L +L+ L+L+   L +  +       L  +  
Sbjct: 286 FETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAY 342

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQ 276
           + L    +  I   +   +   + L+ +DL +N LT        +   ++   I L  N+
Sbjct: 343 IDLQKNHIAIIQDQTFKFL---EKLQTLDLRDNALTT------IHFIPSI-PDIFLSGNK 392

Query: 277 LHGSIPLAFGHMASLRHLDLLSNQLREVP--KFLGNMSSLKRLVFSYNELRGELSEFIQN 334
           L     +      +   + L  N+L  +    FL  +  L+ L+ + N       +   +
Sbjct: 393 LVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 335 VSSGSTKNSSLEWLYLAFNEITGTIPD------LGGFPSLQILSLENNRLTGTISKSIGQ 388
                 +N SLE L+L  N +              G   LQ+L L +N L          
Sbjct: 449 ------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI---- 444
           L+ L  L L+ N L  +    L +NL  LD   +S N L    + D      + +I    
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDLPANLEILD---ISRNQLL-APNPDVFVSLSVLDITHNK 558

Query: 445 FLGSCKIGPRFPKWLQSQNQTVALDVSN 472
           F+  C++   F  WL   N T+A   ++
Sbjct: 559 FICECELST-FINWLNHTNVTIAGPPAD 585

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  136 bits (345), Expect = 5e-33
 Identities = 96/570 (16%), Positives = 179/570 (31%), Gaps = 109/570 (19%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWL 348
             R        L +VP+    +++ +RL+ S+N        +I+ V++ S      L+ L
Sbjct: 5   DGRIAFYRFCNLTQVPQ---VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLL 53

Query: 349 YLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV- 405
            L       TI        P+L+IL L ++++      +   L  L  L L    L    
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 406 ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
           + +  F NL +L  L LS N +                    S  + P F K    ++  
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIR-------------------SLYLHPSFGKLNSLKS-- 152

Query: 466 VALDVSNAGISDIVPDWFWDLTN-QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
             +D S+  I  +       L    L + +L+ N +  ++     K  +    + +    
Sbjct: 153 --IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 525 FDG-PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-- 581
             G    +      S  +S             I +H +       + +        F   
Sbjct: 211 VSGNGWTVDITGNFSNAIS------KSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGL 263

Query: 582 -FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640
              S+  L+L++   F         L+ +  L+L  N ++      F     L +++L  
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCF 700
           N L  E+ +     LP +  + L+ N           +L  +Q LDL  N ++       
Sbjct: 324 NLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TI 377

Query: 701 HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
           H   ++     S   +++                                  +  I+L++
Sbjct: 378 HFIPSIPDIFLSGNKLVT----------------------------------LPKINLTA 403

Query: 761 NKLGGKVLEEIMDLVGLVALNLSNNNLTG-QITPRIGQLKSLDFLDLSRNHFFGGIPSSL 819
           N +                 +LS N L    I   + ++  L  L L++N F        
Sbjct: 404 NLI-----------------HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 820 -SRLRLLSVMDLSYNNFSGKIPKGTQLQRF 848
            S    L  + L  N              F
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVF 476

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (335), Expect = 8e-32
 Identities = 89/425 (20%), Positives = 159/425 (37%), Gaps = 51/425 (12%)

Query: 83  HVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSEL 142
            +    L A+S     ++      +  +   L  LD+S N ++      F  ++ K    
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 143 ALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL--FSSGNLDWLSYLSSLRYLDLADCKLSK 200
           +L                  +      F+N+          L+  SS+R+LDL+   +  
Sbjct: 235 SLI-------------LAHHIMGAGFGFHNIKDPDQNTFAGLA-RSSVRHLDLSHGFVFS 280

Query: 201 FSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLF 260
            ++  +V   L+ L  L L Y  +  I+  +   +    +L+V++LS N L   +Y   F
Sbjct: 281 LNS--RVFETLKDLKVLNLAYNKINKIADEAFYGL---DNLQVLNLSYNLLG-ELYSSNF 334

Query: 261 NVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFS 320
                +  +IDL  N +       F  +  L+ LDL  N L  +      + S+  +  S
Sbjct: 335 YGLPKVA-YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLS 389

Query: 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITG--TIPDLGGFPSLQILSLENNRL 378
            N+L            +    N +   ++L+ N +     +  L   P LQIL L  NR 
Sbjct: 390 GNKL-----------VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 379 TGTISKSI-GQLSKLELLLLSGNSLRGV----ISEALFSNLSSLDTLQLSDNSLTLKFSH 433
           +         +   LE L L  N L+      +   +F  LS L  L L+ N L      
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 434 DWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYL 493
            ++    L  + L S ++       L +  +   LD+S   +    PD F  L+     L
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDLPANLEI--LDISRNQLLAPNPDVFVSLS----VL 552

Query: 494 NLSNN 498
           ++++N
Sbjct: 553 DITHN 557

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  170 bits (433), Expect = 1e-45
 Identities = 104/501 (20%), Positives = 192/501 (38%), Gaps = 85/501 (16%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            S   L  +T L             + +  L  L+++  S+ Q     P  L NL+KL  
Sbjct: 40  VSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           + +  N +    ++  L+ L++L  L L + +++        L NL +L  L L    + 
Sbjct: 95  ILMNNNQI---ADITPLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTIS 147

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
            IS  S L      SL+ +   N          L    + L   +D+ SN++  S     
Sbjct: 148 DISALSGL-----TSLQQLSFGNQVTDLKPLANL----TTLE-RLDISSNKV--SDISVL 195

Query: 286 GHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345
             + +L  L   +NQ+ ++   LG +++L  L  + N+L+ ++              ++L
Sbjct: 196 AKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLK-DIGTL--------ASLTNL 245

Query: 346 EWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
             L LA N+I+  +  L G   L  L L  N+++      +  L+ L  L L+ N L  +
Sbjct: 246 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI 302

Query: 406 ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
                 SNL +L  L L  N+++                      I P     + S  + 
Sbjct: 303 SP---ISNLKNLTYLTLYFNNIS---------------------DISP-----VSSLTKL 333

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDV 520
             L   N  +SD+      +LTN + +L+  +N++        L  +++        + +
Sbjct: 334 QRLFFYNNKVSDVSS--LANLTN-INWLSAGHNQISDLTPLANLTRITQ--------LGL 382

Query: 521 SSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS-HLLTYLDLSNNLLSGRLPDCW 579
           +   +         NVS  N  KN  +G++    +IS     T  D++ NL S    +  
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKN-VTGALIAPATISDGGSYTEPDITWNLPSY-TNEVS 440

Query: 580 FQFDSLAILNLANNSFFGEIP 600
           + F     +     +F G + 
Sbjct: 441 YTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (397), Expect = 6e-41
 Identities = 93/523 (17%), Positives = 191/523 (36%), Gaps = 87/523 (16%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
              L++     L   N+  + +      L  +  L      +         +  L +LT 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDG----VEYLNNLTQ 72

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQ 276
           +      L  I+      +     L  I ++NN + +          +NL   + L +NQ
Sbjct: 73  INFSNNQLTDIT-----PLKNLTKLVDILMNNNQIADITP---LANLTNLT-GLTLFNNQ 123

Query: 277 LHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVS 336
           +    PL   ++ +L  L+L SN + ++   L  ++SL++L F                 
Sbjct: 124 ITDIDPL--KNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ----------VTDL 170

Query: 337 SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLL 396
                 ++LE L ++ N+++  I  L    +L+ L   NN+++      +G L+ L+ L 
Sbjct: 171 KPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELS 227

Query: 397 LSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFP 456
           L+GN L+ + +    ++L++L  L L++N ++     +  P   L  +            
Sbjct: 228 LNGNQLKDIGT---LASLTNLTDLDLANNQIS-----NLAPLSGLTKL------------ 267

Query: 457 KWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKF 511
                      L +    IS+I P     LT  L  L L+ N+++       L +L+   
Sbjct: 268 ---------TELKLGANQISNISP--LAGLTA-LTNLELNENQLEDISPISNLKNLTY-- 313

Query: 512 DSYGPGIDVSSNQFDGPIPL-LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570
                 + +  N      P+     +  L    NK S  +S L ++++  + +L   +N 
Sbjct: 314 ------LTLYFNNISDISPVSSLTKLQRLFFYNNKVS-DVSSLANLTN--INWLSAGHNQ 364

Query: 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
           +S   P        +  L L + ++     +  + +    ++     +L    P+   +G
Sbjct: 365 ISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDG 420

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673
              T  D+  N  S         +    V +   +  F G + 
Sbjct: 421 GSYTEPDITWNLPS-YTNEVS-YTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (330), Expect = 3e-32
 Identities = 94/455 (20%), Positives = 173/455 (38%), Gaps = 76/455 (16%)

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSE 330
            LG   +  ++      +  +  L      ++ +   +  +++L ++ FS N+L   ++ 
Sbjct: 30  VLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-ITP 85

Query: 331 FIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLS 390
                       + L  + +  N+I   I  L    +L  L+L NN++T      +  L+
Sbjct: 86  L--------KNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITD--IDPLKNLT 134

Query: 391 KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCK 450
            L  L LS N++  + +    S L+SL  L   +    LK      P   L  +      
Sbjct: 135 NLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK------PLANLTTL------ 179

Query: 451 IGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLP 505
                            LD+S+  +SDI       LTN L  L  +NN++      G L 
Sbjct: 180 ---------------ERLDISSNKVSDISV--LAKLTN-LESLIATNNQISDITPLGILT 221

Query: 506 DLSRKFDSYGPGIDVSSNQFDGPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYL 564
           +L          + ++ NQ      L    N++ L+L+ N+ S +++ L  ++   LT L
Sbjct: 222 NLDE--------LSLNGNQLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTK--LTEL 270

Query: 565 DLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP 624
            L  N +S           +L  L L  N      P  +S L+++  L+LY N++S    
Sbjct: 271 KLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--I 324

Query: 625 SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI 684
           S   + ++L  +    N +S         +L N+  LS   N+     P     L+ I  
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSL---ANLTNINWLSAGHNQISDLTPLA--NLTRITQ 379

Query: 685 LDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN 719
           L L+    +        N +     K+   ++I+ 
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (309), Expect = 1e-29
 Identities = 98/551 (17%), Positives = 184/551 (33%), Gaps = 139/551 (25%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
            L    +  +           ++   + V     +   +S+         T    +  L 
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ---------TDLDQVTTLQ 52

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEA 409
                I  +I  +    +L  ++  NN+LT      +  L+KL  +L++ N +  +    
Sbjct: 53  ADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-- 107

Query: 410 LFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALD 469
             +NL++L  L L +N +T                              L++      L+
Sbjct: 108 -LANLTNLTGLTLFNNQIT--------------------------DIDPLKNLTNLNRLE 140

Query: 470 VSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
           +S+  ISDI       LT+ L  L+  N      L  L+                     
Sbjct: 141 LSSNTISDISA--LSGLTS-LQQLSFGNQ--VTDLKPLAN-------------------- 175

Query: 530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILN 589
                 +  L++S NK S  IS L  +++  L  L  +NN +S   P       +L  L+
Sbjct: 176 ---LTTLERLDISSNKVS-DISVLAKLTN--LESLIATNNQISDITPLG--ILTNLDELS 227

Query: 590 LANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649
           L  N    +   +++ L ++  L L NN +S    +     ++LT + LG N +S   P 
Sbjct: 228 LNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPL 283

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709
                L  L  L L  N+     P  +  L ++  L L  NNIS I P            
Sbjct: 284 ---AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP------------ 326

Query: 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLE 769
                  +S+                              L  ++ +   +NK+    + 
Sbjct: 327 -------VSS------------------------------LTKLQRLFFYNNKV--SDVS 347

Query: 770 EIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829
            + +L  +  L+  +N ++  +TP +  L  +  L L+   +     +  + + +    +
Sbjct: 348 SLANLTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIP---N 402

Query: 830 LSYNNFSGKIP 840
              N     I 
Sbjct: 403 TVKNVTGALIA 413

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (422), Expect = 2e-43
 Identities = 100/492 (20%), Positives = 183/492 (37%), Gaps = 41/492 (8%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
             S + +DLS N L   +  + F     L   +DL   ++      A+  ++ L  L L 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQ-VLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 298 SNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356
            N ++ +       +SSL++LV     L    +  I ++        +L+ L +A N I 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-------KTLKELNVAHNLIQ 137

Query: 357 GTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLL----LSGNSLRGVISEAL 410
                       +L+ L L +N++       +  L ++ LL     LS N +   I    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQ-------LFNIFLGSCKIGPRFPKWLQSQN 463
           F  +  L  L L +N  +L                  +   F     +       L+   
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 464 QTVALDVSNAGI---SDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDV 520
                +   A +    D + D F  LTN +   +L +  ++ ++ D S  ++     +++
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIE-RVKDFS--YNFGWQHLEL 311

Query: 521 SSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS--GRLPDC 578
            + +F     L   ++  L  + NK   + S    +    L +LDLS N LS  G     
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG-GLPSFFMNGSQLTLMD 637
            F   SL  L+L+ N     +  +   L  +  L   +++L      S F++   L  +D
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI-PFQLCYLSHIQILDLSLNNISGII 696
           +            I   L +L VL +  N F  N  P     L ++  LDLS   +  + 
Sbjct: 428 ISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 697 PKCFHNFTAMTK 708
           P  F++ +++  
Sbjct: 487 PTAFNSLSSLQV 498

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (419), Expect = 4e-43
 Identities = 109/583 (18%), Positives = 196/583 (33%), Gaps = 64/583 (10%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
           P +  + ++TY      NF    IP+ +        L LS         +   +  +LQV
Sbjct: 2   PCVEVVPNITY-QCMELNFYK--IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           LDL    +  +        LS L  L L    +   +      S L SL  L     +L 
Sbjct: 57  LDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLA 113

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
            +    + H    K+L+ +++++N + +   P  F+  +NL  H+DL SN++        
Sbjct: 114 SLENFPIGH---LKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDL 169

Query: 286 GHMASLR----HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTK 341
             +  +      LDL  N +  +         L +L    N     + +      +G   
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 342 NSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTG------TISKSIGQLSKLELL 395
           +  +   +     +     D      L  L++E  RL         I      L+ +   
Sbjct: 230 HRLVLGEFRNEGNLEK--FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 396 LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRF 455
            L   ++  V   +       L+ +                       + L S K     
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP--------------TLKLKSLKR---- 329

Query: 456 PKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYG 515
                       L  ++    +       DL + L +L+LS N +       S+      
Sbjct: 330 ------------LTFTSNKGGNAFS--EVDLPS-LEFLDLSRNGLS-FKGCCSQSDFGTT 373

Query: 516 P--GIDVSSNQFDGPIPLLP--PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLL 571
               +D+S N              +  L+   +       F   +S   L YLD+S+   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 572 SGRLPDCWFQFDSLAILNLANNSFFGEI-PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
                  +    SL +L +A NSF     PD  + LR++  L L    L    P+ F + 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673
           S L ++++  N L   +P  I + L +L  + L +N +  + P
Sbjct: 494 SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 1e-40
 Identities = 108/586 (18%), Positives = 190/586 (32%), Gaps = 87/586 (14%)

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELS 329
                  +  IP       S ++LDL  N LR +  +   +   L+ L  S  E++    
Sbjct: 13  QCMELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQ 388
              Q++S        L  L L  N I         G  SLQ L      L    +  IG 
Sbjct: 70  GAYQSLSH-------LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGS 448
           L  L+ L ++ N ++       FSNL++L+ L LS N +   +  D     Q+       
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM------- 175

Query: 449 CKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPD-- 506
                            ++LD+S   ++ I P  F ++  +L+ L L NN     +    
Sbjct: 176 -------------PLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTC 220

Query: 507 ------------LSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLC 554
                       +  +F + G       +  +G   L    +    L+   +        
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG---LCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 555 SISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL 614
                 ++   L +  +       +        L L N  F       +  L+    L+ 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSLK---RLTF 332

Query: 615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG-EIPTWIGESLPNLVVLSLRSNKFHGNIP 673
            +N          ++   L  +DL +NGLS     +       +L  L L  N     + 
Sbjct: 333 TSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 674 FQLCYLSHIQILDLSLNNISGIIPKC-FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP 732
                L  ++ LD   +N+  +     F +   +                 L +      
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY---------------LDISHTHTR 434

Query: 733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD-LVGLVALNLSNNNLTGQI 791
           + F   + G        L  ++++ ++ N      L +I   L  L  L+LS   L  Q+
Sbjct: 435 VAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QL 485

Query: 792 TPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
           +P     L SL  L+++ N           RL  L  + L  N + 
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (365), Expect = 3e-36
 Identities = 100/477 (20%), Positives = 180/477 (37%), Gaps = 49/477 (10%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
           L    N  +  L+ L  L+++ N      +PE+  +L  L  L LSS +        L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 160 LSKLQV----LDLRFNNL--FSSGNLDWLSYLSSLRYLDLADCKLS--KFSNWVQVLSNL 211
           L ++ +    LDL  N +     G    +     L  L L +   S       +Q L+ L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPW--LFNVSSNLVDH 269
                +   + +   +       +    +L + +    YL   +     LFN  +N+   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV-SS 286

Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELS 329
             L S  +      ++      +HL+L++ +  + P     + SLKRL F+ N+     S
Sbjct: 287 FSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFS 342

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITG---TIPDLGGFPSLQILSLENNRLTGTISKSI 386
           E             SLE+L L+ N ++          G  SL+ L L  N +  T+S + 
Sbjct: 343 E---------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446
             L +LE L    ++L+ +   ++F +L +L  L +S     + F+  +     L  + +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 447 GSCKIGPRFPKW-LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK---- 501
                   F             LD+S   +  + P  F  L++ L  LN+++N++K    
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMASNQLKSVPD 511

Query: 502 ---GKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCS 555
               +L  L +        I + +N +D   P +      LN +  K  GS     S
Sbjct: 512 GIFDRLTSLQK--------IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  163 bits (415), Expect = 9e-43
 Identities = 99/530 (18%), Positives = 189/530 (35%), Gaps = 70/530 (13%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
            +  LDLS+N  +       + +   L  L L S++          +L  L+ LDL  N+
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
           L SS +  W   LSSL+YL+L             +  NL +L  L +G  +    S    
Sbjct: 86  L-SSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVET--FSEIRR 141

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLR 292
           +      SL  +++    L  +          ++  H+ L  ++    + +    ++S+R
Sbjct: 142 IDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIH-HLTLHLSESAFLLEIFADILSSVR 199

Query: 293 HLDLLSNQLREVPK----FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL 348
           +L+L    L              S +K+L F  + L  E    +  +     + S +E+ 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 349 YLAFNEIT-------GTIPDLG--GFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
               N +          + +LG     +++ L +    L   +S     L K++ + +  
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           + +  ++  +   +L SL+ L LS+N +  ++  +        +               L
Sbjct: 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS---------------L 363

Query: 460 QSQNQTVALDVSNAGISDI--VPDWFWDLTNQLYYLNLSNNEMK------GKLPDLSRKF 511
           Q+      L +S   +  +    +    L N L  L++S N              +    
Sbjct: 364 QT------LVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTFHPMPDSCQWPEKMRF-- 414

Query: 512 DSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNN 569
                 +++SS         +P  +  L++S N          S S  L  L  L +S N
Sbjct: 415 ------LNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-------SFSLFLPRLQELYISRN 461

Query: 570 LLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSL 619
            L   LPD    F  L ++ ++ N            L S+  + L+ N  
Sbjct: 462 KLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  160 bits (406), Expect = 1e-41
 Identities = 95/497 (19%), Positives = 179/497 (36%), Gaps = 52/497 (10%)

Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
           +++ +DLS N +T  I        +NL   + L S++++     AF  + SL HLDL  N
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQ-VLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 300 QLREVPK-FLGNMSSLKRLVFSYNELRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEITG 357
            L  +   + G +SSLK L    N  +   ++    N+++       L+ L +   E   
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN-------LQTLRIGNVETFS 137

Query: 358 TIP--DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLS 415
            I   D  G  SL  L ++   L    S+S+  +  +  L L  +     + E     LS
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILS 196

Query: 416 SLDTLQLSDNSLT----------LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
           S+  L+L D +L              S      F+   +   S     +  +++   ++ 
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 466 VALDVSNAGISDIVPDWFWDLTN-------QLYYLNLSNNEMKGKLPDLSRKFDSYGPGI 518
              D +  G+ D  P     ++         +  L++    +   L  +          I
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRI 315

Query: 519 DVSSNQFD---GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSG 573
            V +++             ++  L+LS+N          +       L  L LS N L  
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR- 374

Query: 574 RLPDCWFQFD---SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
            +           +L  L+++ N+F   +PDS  +   +  L+L +  +           
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT- 432

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
             L ++D+  N L           LP L  L +  NK    +P        + ++ +S N
Sbjct: 433 --LEVLDVSNNNLDS-----FSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRN 483

Query: 691 NISGIIPKCFHNFTAMT 707
            +  +    F   T++ 
Sbjct: 484 QLKSVPDGIFDRLTSLQ 500

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (402), Expect = 5e-41
 Identities = 106/584 (18%), Positives = 203/584 (34%), Gaps = 86/584 (14%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL 173
               D    +F+  P     G    +  L LS  +        L   + LQVL L+ + +
Sbjct: 7   SGVCDGRSRSFTSIPS----GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 174 FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLL 233
            ++   D    L SL +LDL+D  LS  S+       L SL  L L       +   SL 
Sbjct: 63  -NTIEGDAFYSLGSLEHLDLSDNHLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 234 HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH 293
                 +L+ + + N    + I    F   ++L   +++ +  L      +   +  + H
Sbjct: 120 P--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 294 LDLLSNQLREVPKFLGN-MSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAF 352
           L L  ++   + +   + +SS++ L      L    + F  +       +S ++ L    
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNL----ARFQFSPLPVDEVSSPMKKLA--- 229

Query: 353 NEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV--ISEAL 410
                       F    +     N L   + + I +LS++E    + N L         +
Sbjct: 230 ------------FRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDV 470
            S L  ++T+ +    +                       +            +   + V
Sbjct: 277 VSELGKVETVTIRRLHIP-------------------QFYLFYDLSTVYSLLEKVKRITV 317

Query: 471 SNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIP 530
            N+ +  +   +   L + L +L+LS N M  +    S    ++                
Sbjct: 318 ENSKVFLVPCSFSQHLKS-LEFLDLSENLMVEEYLKNSACKGAW---------------- 360

Query: 531 LLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPDCWFQFDSLAIL 588
              P++ +L LS+N    S+     I   L  LT LD+S N     +PD     + +  L
Sbjct: 361 ---PSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 589 NLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
           NL++      +       +++  L + NN+L     SF +   +L  + + +N L   +P
Sbjct: 416 NLSSTGI-RVVKTC--IPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK-TLP 467

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNI 692
                  P L+V+ +  N+           L+ +Q + L  N  
Sbjct: 468 D--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 7e-36
 Identities = 100/554 (18%), Positives = 195/554 (35%), Gaps = 58/554 (10%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWL 348
           +    D  S     +P   G  +++K L  S+N         I  +  G  +  ++L+ L
Sbjct: 6   ASGVCDGRSRSFTSIPS--GLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVL 55

Query: 349 YLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI 406
            L  + I  TI         SL+ L L +N L+   S   G LS L+ L L GN  + + 
Sbjct: 56  ILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 407 SEALFSNLSSLDTLQLSD-NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
             +LF NL++L TL++ +  + +     D+     L  + + +  +     + L+S    
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF 525
             L +  +  + ++  +   L++ + YL L +  +  +        D     +   + + 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSS-VRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFR- 231

Query: 526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSL 585
                +L     +  L   ++   +S +      L    D + +           +  ++
Sbjct: 232 ---GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG 645
             L++     F ++    S L  +  +++ N+ +     SF  +   L  +DL +N +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 646 EIPTWIG--ESLPNLVVLSLRSNKFH--GNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
           E         + P+L  L L  N           L  L ++  LD+S N    +   C  
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ- 407

Query: 702 NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN 761
                       +         L L    + ++              I   ++++D+S+N
Sbjct: 408 --------WPEKMRF-------LNLSSTGIRVVKTC-----------IPQTLEVLDVSNN 441

Query: 762 KLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR 821
            L        + L  L  L +S N L     P       L  + +SRN           R
Sbjct: 442 NLD----SFSLFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 822 LRLLSVMDLSYNNF 835
           L  L  + L  N +
Sbjct: 496 LTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (350), Expect = 2e-34
 Identities = 76/412 (18%), Positives = 144/412 (34%), Gaps = 34/412 (8%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
            +      L +L  L +                L  L+EL + +          L ++  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWV----QVLSNLRSLTNLY 218
           +  L L  +       +     LSS+RYL+L D  L++F        +V S ++ L    
Sbjct: 174 IHHLTLHLSESAFLLEIF-ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 219 LGYCDLPPISTPSLLHINYS-KSLEVIDLSNNYLT------NSIYPWLFNVSSNLVDHID 271
               D        LL        +E  D + N L       + +   L  V +  +  + 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSE 330
           +    L   +   +  +  ++ + + ++++  VP  F  ++ SL+ L  S N     + E
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN----LMVE 348

Query: 331 FIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGG----FPSLQILSLENNRLTGTISKSI 386
                S+      SL+ L L+ N +  ++   G       +L  L +  N     +  S 
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446
               K+  L LS   +R V+   +   L  LD   +S+N+L            +L  +++
Sbjct: 407 QWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLD---VSNNNLDSFSLF----LPRLQELYI 458

Query: 447 GSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
              K+    P         V + +S   +  +    F  LT+ L  + L  N
Sbjct: 459 SRNKLK-TLPDASLFPVLLV-MKISRNQLKSVPDGIFDRLTS-LQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 3e-28
 Identities = 63/327 (19%), Positives = 120/327 (36%), Gaps = 26/327 (7%)

Query: 83  HVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSEL 142
            +   +L     SP+   + +     L  +     D S+N            S  +  + 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 143 ALSS-AQFAGPIPHQLGNLSKLQVLDLRFNNL----FSSGNLDWLSYLSSLRYLDLADCK 197
            L+    F       +  L K++ + +R  ++             S L  ++ + + + K
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 198 LSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-SIY 256
           +           +L+SL  L L    +      +        SL+ + LS N+L +    
Sbjct: 322 VFLVPC--SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 257 PWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKR 316
             +     NL   +D+  N  H  +P +      +R L+L S  +R V        +L+ 
Sbjct: 380 GEILLTLKNLT-SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT--CIPQTLEV 435

Query: 317 LVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENN 376
           L  S N L            S S     L+ LY++ N++  T+PD   FP L ++ +  N
Sbjct: 436 LDVSNNNL-----------DSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRN 483

Query: 377 RLTGTISKSI-GQLSKLELLLLSGNSL 402
           +L  ++   I  +L+ L+ + L  N  
Sbjct: 484 QLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 5e-24
 Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 532 LPPNVSSLNLSKNKFS----GSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-DSLA 586
           L   + SL+LS NK +    G +          L  L L ++ ++  +    F    SL 
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRAC-----ANLQVLILKSSRIN-TIEGDAFYSLGSLE 77

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG-GLPSFFMNGSQLTLMDLGKNGLSG 645
            L+L++N            L S+  L+L  N     G+ S F N + L  + +G      
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 646 EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTA 705
           EI       L +L  L +++          L  +  I  L L L+  + ++       ++
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 706 MTKEKSSNLSIISNYYYNLGLRGMLMPL---------IFFDTWKGGQYEYKSILGL--IK 754
           +   +  + ++    +  L +  +  P+         +  +++       + IL L  ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 755 IIDLSSNKLGGKVLEEI--------MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL 806
             D + N LG     E         ++ V +  L++    L   ++     L+ +  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 807 SRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
             +  F    S    L+ L  +DLS N   
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 8e-12
 Identities = 47/335 (14%), Positives = 93/335 (27%), Gaps = 54/335 (16%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAILNLAN 592
                 +     F+   S    +++ +   LDLS N ++  +     +   +L +L L +
Sbjct: 5   DASGVCDGRSRSFT---SIPSGLTAAM-KSLDLSFNKIT-YIGHGDLRACANLQVLILKS 59

Query: 593 NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG 652
           +       D+   L S+  L L +N LS    S+F   S L  ++L  N       T + 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 653 ESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711
            +L NL  L + + +    I       L+ +  L++   ++     +   +   +     
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH--- 176

Query: 712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771
                                                       + L  ++    +    
Sbjct: 177 --------------------------------------------LTLHLSESAFLLEIFA 192

Query: 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLS 831
             L  +  L L + NL       +   +    +             S + L  L    L 
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 832 YNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPN 866
            +           L  F  S      EL  +    
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  155 bits (393), Expect = 2e-41
 Identities = 76/323 (23%), Positives = 136/323 (42%), Gaps = 36/323 (11%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            +  +L+ +T L ++    +     + I  L  L  L L+  Q     P  L NL KL  
Sbjct: 38  VTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           L +  N +    ++  L  L++LR L L +  +S  S     L+NL  + +L LG     
Sbjct: 93  LYIGTNKIT---DISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHN- 144

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
            +S  S   ++    L  + ++ + + +          ++L   + L  NQ+    PL  
Sbjct: 145 -LSDLS--PLSNMTGLNYLTVTESKVKDVTP---IANLTDLY-SLSLNYNQIEDISPL-- 195

Query: 286 GHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345
             + SL +     NQ+ ++   + NM+ L  L    N++            S     S L
Sbjct: 196 ASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITD---------LSPLANLSQL 245

Query: 346 EWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
            WL +  N+I+  I  +     L++L++ +N+++      +  LS+L  L L+ N L   
Sbjct: 246 TWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 406 ISEALFSNLSSLDTLQLSDNSLT 428
             E     L++L TL LS N +T
Sbjct: 303 DMEV-IGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (383), Expect = 3e-40
 Identities = 69/326 (21%), Positives = 133/326 (40%), Gaps = 42/326 (12%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
             +  L +L YL+L+ N  +       + +L KL+ L + + +        L NL+ L+ 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRE 114

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC--- 222
           L L  +N+    ++  L+ L+ +  L+L           +  LSN+  L  L +      
Sbjct: 115 LYLNEDNI---SDISPLANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVK 168

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
           D+ PI+            L  + L+ N + +          ++L  +     NQ+    P
Sbjct: 169 DVTPIAN--------LTDLYSLSLNYNQIEDISP---LASLTSL-HYFTAYVNQITDITP 216

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
           +   +M  L  L + +N++ ++   L N+S L  L    N++   ++             
Sbjct: 217 V--ANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISD-INAV--------KDL 264

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
           + L+ L +  N+I+  I  L     L  L L NN+L     + IG L+ L  L LS N +
Sbjct: 265 TKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLT 428
             +      ++LS +D+   ++  + 
Sbjct: 324 TDIRP---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (369), Expect = 3e-38
 Identities = 73/396 (18%), Positives = 150/396 (37%), Gaps = 67/396 (16%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
               L       L   + +          L  +++L ++  + A      +  L+ L+ L
Sbjct: 17  PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYL 71

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
           +L  N +    ++  LS L  L  L +   K++  S     L NL +L  LYL   ++  
Sbjct: 72  NLNGNQI---TDISPLSNLVKLTNLYIGTNKITDISA----LQNLTNLRELYLNEDNISD 124

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           IS      +     +  ++L  N+                             S      
Sbjct: 125 IS-----PLANLTKMYSLNLGANHNL---------------------------SDLSPLS 152

Query: 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346
           +M  L +L +  +++++V   + N++ L  L  +YN++   +S             +SL 
Sbjct: 153 NMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIED-ISPL--------ASLTSLH 202

Query: 347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI 406
           +     N+IT  I  +     L  L + NN++T      +  LS+L  L +  N +  + 
Sbjct: 203 YFTAYVNQITD-ITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDIN 259

Query: 407 SEALFSNLSSLDTLQLSDNSLT-LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
           +     +L+ L  L +  N ++ +   ++ +   QL ++FL + ++G    + +      
Sbjct: 260 A---VKDLTKLKMLNVGSNQISDISVLNNLS---QLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
             L +S   I+DI P     L+  +   + +N  +K
Sbjct: 314 TTLFLSQNHITDIRP--LASLSK-MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (368), Expect = 3e-38
 Identities = 81/459 (17%), Positives = 158/459 (34%), Gaps = 114/459 (24%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL 173
              L       +          L +     L  A     +      L  +  L +    +
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 174 FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLL 233
            S   +  + YL++L YL+L   +++  S     LSNL  LTNLY+G   +  IS    L
Sbjct: 57  AS---IQGIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISALQNL 109

Query: 234 HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH 293
                 +L  + L+ + +++                                 ++  +  
Sbjct: 110 -----TNLRELYLNEDNISDIS----------------------------PLANLTKMYS 136

Query: 294 LDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFN 353
           L+L +N        L NM+ L  L  + ++++  ++             + L  L L +N
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTPI--------ANLTDLYSLSLNYN 187

Query: 354 EITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
           +I   I  L    SL   +   N++T      +  +++L  L +  N +  +      +N
Sbjct: 188 QIED-ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP---LAN 241

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA 473
           LS L  L++  N ++                      I       ++   +   L+V + 
Sbjct: 242 LSQLTWLEIGTNQIS---------------------DINA-----VKDLTKLKMLNVGSN 275

Query: 474 GISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLP 533
            ISDI      +L+  L  L L+NN++  +  ++                          
Sbjct: 276 QISDISV--LNNLSQ-LNSLFLNNNQLGNEDMEVIGGL---------------------- 310

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
            N+++L LS+N  +  I  L S+S   +   D +N ++ 
Sbjct: 311 TNLTTLFLSQNHIT-DIRPLASLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 2e-31
 Identities = 81/424 (19%), Positives = 150/424 (35%), Gaps = 82/424 (19%)

Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELS 329
           +      ++   P A   +A      L    + +V      + S+ +LV +  ++   + 
Sbjct: 5   LATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVA-SIQ 60

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQL 389
                        ++LE+L L  N+IT  I  L     L  L +  N++T     ++  L
Sbjct: 61  GI--------EYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKIT--DISALQNL 109

Query: 390 SKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
           + L  L L+ +++  +      +NL+ + +L L  N                        
Sbjct: 110 TNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNL--------------------- 145

Query: 450 KIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSR 509
                    L +      L V+ + + D+ P    +LT+ LY L+L+ N    ++ D+S 
Sbjct: 146 ----SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTD-LYSLSLNYN----QIEDIS- 193

Query: 510 KFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNN 569
                             P+  L  ++       N+ +  I+ + +++   L  L + NN
Sbjct: 194 ------------------PLASLT-SLHYFTAYVNQIT-DITPVANMTR--LNSLKIGNN 231

Query: 570 LLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMN 629
            ++            L  L +  N       +++  L  +  L++ +N +S    S   N
Sbjct: 232 KITD--LSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSL 689
            SQL  + L  N L  E    IG  L NL  L L  N      P     LS +   D + 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFAN 342

Query: 690 NNIS 693
             I 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 2e-24
 Identities = 69/375 (18%), Positives = 142/375 (37%), Gaps = 61/375 (16%)

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDVSS 522
             +  A ++D+V     +L + +  L ++  ++        L +L          ++++ 
Sbjct: 27  AVLQKASVTDVVT--QEELES-ITKLVVAGEKVASIQGIEYLTNLEY--------LNLNG 75

Query: 523 NQFDGPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ 581
           NQ     PL     +++L +  NK +  IS L ++++  L  L L+ + +S         
Sbjct: 76  NQITDISPLSNLVKLTNLYIGTNKIT-DISALQNLTN--LRELYLNEDNISD--ISPLAN 130

Query: 582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
              +  LNL  N         +S +  +  L++  + +     +   N + L  + L  N
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYN 187

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
            +    P     SL +L   +   N+     P  +  ++ +  L +  N I+ + P    
Sbjct: 188 QIEDISPL---ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240

Query: 702 NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN 761
           N + +T      L I +N   ++                         L  +K++++ SN
Sbjct: 241 NLSQLTW-----LEIGTNQISDI--------------------NAVKDLTKLKMLNVGSN 275

Query: 762 KLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR 821
           ++    +  + +L  L +L L+NN L  +    IG L +L  L LS+NH        L+ 
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLAS 331

Query: 822 LRLLSVMDLSYNNFS 836
           L  +   D +     
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 6e-24
 Identities = 74/379 (19%), Positives = 138/379 (36%), Gaps = 61/379 (16%)

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDVSS 522
           L    A I+ I PD   DL        L    +       +L  +++        + V+ 
Sbjct: 5   LATLPAPINQIFPDA--DLAE-GIRAVLQKASVTDVVTQEELESITK--------LVVAG 53

Query: 523 NQFDGPIPL-LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ 581
            +      +    N+  LNL+ N+ +  IS L ++    LT L +  N ++         
Sbjct: 54  EKVASIQGIEYLTNLEYLNLNGNQIT-DISPLSNLVK--LTNLYIGTNKITD--ISALQN 108

Query: 582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
             +L  L L  ++        ++ L  + SL+L  N       S   N + L  + + ++
Sbjct: 109 LTNLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
            +    P     +L +L  LSL  N+     P  L  L+ +      +N I+ I P    
Sbjct: 166 KVKDVTPI---ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218

Query: 702 NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN 761
           N T +       L I +N          +  L                L  +  +++ +N
Sbjct: 219 NMTRLNS-----LKIGNNK---------ITDLSPLAN-----------LSQLTWLEIGTN 253

Query: 762 KLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR 821
           ++    +  + DL  L  LN+ +N ++  I+  +  L  L+ L L+ N         +  
Sbjct: 254 QI--SDINAVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 822 LRLLSVMDLSYNNFSGKIP 840
           L  L+ + LS N+ +   P
Sbjct: 310 LTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 3e-23
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 22/223 (9%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
           +    L  +  L YL ++ +          I +L  L  L+L+  Q     P  L +L+ 
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP--LASLTS 200

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
           L       N +    ++  ++ ++ L  L + + K++  S     L+NL  LT L +G  
Sbjct: 201 LHYFTAYVNQI---TDITPVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTN 253

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
            +  I+    L       L+++++ +N +++       N  S L   + L +NQL     
Sbjct: 254 QISDINAVKDL-----TKLKMLNVGSNQISDISV---LNNLSQLNS-LFLNNNQLGNEDM 304

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325
              G + +L  L L  N + ++   L ++S +    F+   ++
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.6 bits (192), Expect = 3e-15
 Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 43/280 (15%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620
              L      ++   PD            L   S    +      L SI  L +    ++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS 680
                     + L  ++L  N ++   P     +L  L  L + +NK   +I   L  L+
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT-DISA-LQNLT 110

Query: 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWK 740
           +++ L L+ +NIS I P    N T M       L++ +N+         L PL       
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYS-----LNLGANH-----NLSDLSPL------- 151

Query: 741 GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800
                  S +  +  + ++ +K+    +  I +L  L +L+L+ N +   I+P +  L S
Sbjct: 152 -------SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED-ISP-LASLTS 200

Query: 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840
           L +     N       + ++ +  L+ + +  N  +   P
Sbjct: 201 LHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 1e-09
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            ++  L  L  L++  N  S       + +L +L+ L L++ Q        +G L+ L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSK 200
           L L  N++    ++  L+ LS +   D A+  + K
Sbjct: 316 LFLSQNHI---TDIRPLASLSKMDSADFANQVIKK 347

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (367), Expect = 2e-38
 Identities = 60/316 (18%), Positives = 118/316 (37%), Gaps = 31/316 (9%)

Query: 129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188
           I E   +  +     ++ +     +     +   ++ LDL  N L S  +   L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSN 248
             L+L+   L +  +    L +L +L  L L    +  +            S+E +  +N
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVGP--------SIETLHAAN 108

Query: 249 NYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-- 306
           N ++  +             +I L +N++     L  G  + +++LDL  N++  V    
Sbjct: 109 NNIS-RVSCSRG---QGKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 307 FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP 366
              +  +L+ L   YN +  ++   +          + L+ L L+ N++    P+     
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQVV--------FAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426
            +  +SL NN+L   I K++     LE   L GN          FS    + T+      
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 427 -LTLKFSHDWTPPFQL 441
            LT +   + T P   
Sbjct: 274 KLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (299), Expect = 2e-29
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 22/260 (8%)

Query: 239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
              ++  ++++ L       L   + N+   +DL  N L             L  L+L S
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVK-ELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 299 NQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT 358
           N L E      ++S+L+ L  + N ++ EL               S+E L+ A N I+  
Sbjct: 68  NVLYETLDL-ESLSTLRTLDLNNNYVQ-ELLV-----------GPSIETLHAANNNIS-R 113

Query: 359 IPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLD 418
           +         + + L NN++T       G  S+++ L L  N +  V    L ++  +L+
Sbjct: 114 VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 419 TLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI 478
            L L  N +            +L  + L S K+        QS      + + N  +  I
Sbjct: 173 HLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 479 VPDWFWDLTNQLYYLNLSNN 498
                    N L + +L  N
Sbjct: 230 -EKALRFSQN-LEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (274), Expect = 4e-26
 Identities = 55/364 (15%), Positives = 109/364 (29%), Gaps = 94/364 (25%)

Query: 280 SIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSG 338
           +I     +    +   +  + L++       +  ++K L  S N L    +  +      
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---- 56

Query: 339 STKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS 398
               + LE L L+ N +     DL    +L+ L L NN +       +     +E L  +
Sbjct: 57  ---FTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW 458
            N++   +S +      ++    L++N +T                              
Sbjct: 108 NNNIS-RVSCSRGQGKKNIY---LANNKIT------------------------------ 133

Query: 459 LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGI 518
                              +        +  + YL+L  NE+                  
Sbjct: 134 ------------------MLRDLDEGCRSR-VQYLDLKLNEID----------------- 157

Query: 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
            V+  +       L      LNL  N     +      +   L  LDLS+N L+  +   
Sbjct: 158 TVNFAELAASSDTL----EHLNLQYNFIY-DVKGQVVFAK--LKTLDLSSNKLA-FMGPE 209

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG-LPSFFMNGSQLTLMD 637
           +     +  ++L NN     I  ++ F +++    L  N    G L  FF    ++  + 
Sbjct: 210 FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 638 LGKN 641
               
Sbjct: 269 KQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 41/276 (14%), Positives = 89/276 (32%), Gaps = 37/276 (13%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620
                ++++ L   L        ++  L+L+ N         ++    +  L+L +N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS 680
                   + S L  +DL  N +  E+        P++  L   +N     +        
Sbjct: 72  -ETLDLE-SLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSCSR--GQ 120

Query: 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWK 740
             + + L+ N I+ +        + +       L +  N    +    +           
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQY-----LDLKLNEIDTVNFAELA---------- 165

Query: 741 GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800
                  +    ++ ++L  N +    ++  +    L  L+LS+N L   + P       
Sbjct: 166 -------ASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
           + ++ L  N     I  +L   + L   DL  N F 
Sbjct: 216 VTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 59/309 (19%), Positives = 103/309 (33%), Gaps = 41/309 (13%)

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAIL 588
           I           ++ +    +++ L   + ++   LDLS N LS         F  L +L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNV-KELDLSGNPLSQISAADLAPFTKLELL 63

Query: 589 NLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
           NL++N    E  D +  L ++ +L L NN +        + G  +  +    N +S  + 
Sbjct: 64  NLSSNVL-YETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS 115

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI-IPKCFHNFTAMT 707
                       + L +NK            S +Q LDL LN I  +   +   +   + 
Sbjct: 116 C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 708 KEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKV 767
                   I             +   +                  +K +DLSSNKL   +
Sbjct: 173 HLNLQYNFIYD-----------VKGQVV--------------FAKLKTLDLSSNKLA-FM 206

Query: 768 LEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
             E     G+  ++L NN L   I   +   ++L+  DL  N F  G        +   V
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRV 264

Query: 828 MDLSYNNFS 836
             ++     
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 4e-18
 Identities = 58/431 (13%), Positives = 117/431 (27%), Gaps = 118/431 (27%)

Query: 382 ISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQL 441
           I +     ++ ++  ++ +SL+  ++  L  +  ++  L LS N L+             
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLS------------- 47

Query: 442 FNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
                                               I        T  L  LNLS+N + 
Sbjct: 48  -----------------------------------QISAADLAPFTK-LELLNLSSNVLY 71

Query: 502 GKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLL 561
            +  DL                            + +L+L+ N     +    S     +
Sbjct: 72  -ETLDLES-----------------------LSTLRTLDLNNNYVQ-ELLVGPS-----I 101

Query: 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG 621
             L  +NN +S R+     Q      + LANN               +  L L  N +  
Sbjct: 102 ETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 622 -GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS 680
                   +   L  ++L  N +  ++   +      L  L L SNK    +  +    +
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWK 740
            +  + L  N +  +I K       +      +  +  N ++   LR             
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLE-----HFDLRGNGFHCGTLR------------- 255

Query: 741 GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800
                        ++  ++   +  K L    +    V           +  P      +
Sbjct: 256 ------DFFSKNQRVQTVAKQTV--KKLTGQNEEECTVPTLGHYGAYCCEDLPA---PFA 304

Query: 801 LDFLDLSRNHF 811
              + L  +H 
Sbjct: 305 DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 34/219 (15%), Positives = 60/219 (27%), Gaps = 39/219 (17%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
            LL    +  L  + NN S        G       + L++ +         G  S++Q L
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQG----KKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
           DL+ N + +    +  +   +L +L+L    +               L  L L    L  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAF 205

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           +          +  +  I L NN L                             I  A  
Sbjct: 206 MGP----EFQSAAGVTWISLRNNKLV---------------------------LIEKALR 234

Query: 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325
              +L H DL  N             + +    +   ++
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.7 bits (179), Expect = 9e-14
 Identities = 34/227 (14%), Positives = 73/227 (32%), Gaps = 36/227 (15%)

Query: 622 GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSH 681
            +     NG++  +  +  + L  +    + +S  N+  L L  N         L   + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 682 IQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG 741
           +++L+LS N +   +     + + +       L + +NY   L                 
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRT-----LDLNNNYVQEL----------------- 95

Query: 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL 801
                  +   I+ +  ++N +  +V        G   + L+NN +T       G    +
Sbjct: 96  ------LVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 802 DFLDLSRNHFFG-GIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQR 847
            +LDL  N           +    L  ++L YN     +       +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 21/149 (14%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
              +    L  LDLS N  +   +     S   ++ ++L + +    I   L     L+ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
            DLR N        D+ S    ++ +                   ++ LT      C +P
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVA---------------KQTVKKLTGQNEEECTVP 286

Query: 226 PISTPSLLHIN---YSKSLEVIDLSNNYL 251
            +               +  +I L +++ 
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  149 bits (378), Expect = 2e-38
 Identities = 63/375 (16%), Positives = 130/375 (34%), Gaps = 35/375 (9%)

Query: 129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188
           I E   +  +     ++ +     +     +   ++ LDL  N L S  +   L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSN 248
             L+L+   L +  +    L +L +L  L L    +  +            S+E +  +N
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVGP--------SIETLHAAN 108

Query: 249 NYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-- 306
           N ++  +             +I L +N++     L  G  + +++LDL  N++  V    
Sbjct: 109 NNIS-RVSCSRG---QGKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 307 FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP 366
              +  +L+ L   YN +  ++   +          + L+ L L+ N++    P+     
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQVV--------FAKLKTLDLSSNKLAFMGPEFQSAA 214

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN- 425
            +  +SL NN+L   I K++     LE   L GN          FS    + T+      
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 426 SLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT--VALDVSNAGISDIVPDWF 483
            LT +   + T P            +   F   L +  +     L    +    +  +  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 484 WDLTNQLYYLNLSNN 498
                +   ++    
Sbjct: 334 NQ--ARQREIDALKE 346

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (339), Expect = 2e-33
 Identities = 68/460 (14%), Positives = 140/460 (30%), Gaps = 31/460 (6%)

Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
             ++  ++++ L       L   + N+   +DL  N L             L  L+L SN
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVK-ELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 300 QLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI 359
            L E      ++S+L+ L  + N ++ EL               S+E L+ A N I+  +
Sbjct: 69  VLYETLDL-ESLSTLRTLDLNNNYVQ-ELLV-----------GPSIETLHAANNNIS-RV 114

Query: 360 PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDT 419
                    + + L NN++T       G  S+++ L L  N +  V    L ++  +L+ 
Sbjct: 115 S-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIV 479
           L L  N +            +L  + L S K+        QS      + + N  +  I 
Sbjct: 174 LNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI- 229

Query: 480 PDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF-DGPIPLLPPNVSS 538
                   N L + +L  N             +     +   + +   G         + 
Sbjct: 230 EKALRFSQN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 539 LNLSKNKFS----GSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS 594
            +                L ++       L    +    RL            ++     
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQ 347

Query: 595 FFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGES 654
           +   I       ++  +L     +L   + +     ++L         +         E 
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ--QAVGQIELQHATEE 405

Query: 655 LPNLVVLSLRSNKF-HGNIPFQLCYLSHIQILDLSLNNIS 693
              L +L     ++    +  Q    + I+  D+  +  +
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 60/389 (15%), Positives = 117/389 (30%), Gaps = 50/389 (12%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
             ++  LDLS N  S       +    KL  L LSS      +   L +LS L+ LDL  
Sbjct: 33  AWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89

Query: 171 NNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
           N +        L    S+  L  A+  +S+ S      S  +   N+YL    +  +   
Sbjct: 90  NYVQE------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDL 138

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
                     ++ +DL  N +    +  L   S  L  H++L  N ++          A 
Sbjct: 139 DEGCR---SRVQYLDLKLNEIDTVNFAELAASSDTLE-HLNLQYNFIYDVKGQVV--FAK 192

Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
           L+ LDL SN+L  +     + + +  +    N+        +  +      + +LE   L
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK--------LVLIEKALRFSQNLEHFDL 244

Query: 351 AFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEAL 410
             N             + ++ ++    +     ++  + +   L           +    
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPF 303

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDV 470
              L +L   + +  S     +                     R     ++Q +   +D 
Sbjct: 304 ADRLIALKRKEHALLSGQGSETE--------------------RLECERENQARQREIDA 343

Query: 471 SNAGISDIVPDWFWDLTNQLYYLNLSNNE 499
                  ++             L      
Sbjct: 344 LKEQYRTVIDQVTLRKQA-KITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 9e-25
 Identities = 63/514 (12%), Positives = 144/514 (28%), Gaps = 79/514 (15%)

Query: 328 LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSI 386
           + E  QN        +  +   +  + +   +        +++ L L  N L+   +  +
Sbjct: 2   IHEIKQN-------GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL 54

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446
              +KLELL LS N L   +      +LS+L TL L++N +      +      +  +  
Sbjct: 55  APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHA 106

Query: 447 GSCKIG---PRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK 503
            +  I        +  ++      + ++N  I+ +        +  + YL+L  NE+   
Sbjct: 107 ANNNISRVSCSRGQGKKN------IYLANNKITMLRDLDEGCRSR-VQYLDLKLNEID-- 157

Query: 504 LPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTY 563
                           V+  +       L      LNL  N     +      +   L  
Sbjct: 158 ---------------TVNFAELAASSDTL----EHLNLQYNFIY-DVKGQVVFAK--LKT 195

Query: 564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG- 622
           LDLS+N L+  +   +     +  ++L NN     I  ++ F +++    L  N    G 
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 623 LPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHI 682
           L  FF    ++  +         ++     E      +    +            +   +
Sbjct: 254 LRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYC---CEDLPAPFADRL 307

Query: 683 QILDLSLNNISGIIPKCFHNFTAMTKEKSS--NLSIISNYYYNLGLRGMLMPLIFFDTWK 740
             L    + +               + ++    +  +   Y  +                
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV---------------- 351

Query: 741 GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800
               +          ++     L  +V         L                   Q   
Sbjct: 352 --IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNN 834
                + + +    +     +   +   D+  + 
Sbjct: 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 2e-24
 Identities = 45/346 (13%), Positives = 97/346 (28%), Gaps = 37/346 (10%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
            LL    +  L  + NN S        G       + L++ +         G  S++Q L
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSRGQG----KKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQ-------------------V 207
           DL+ N + +    +  +   +L +L+L    +      V                     
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209

Query: 208 LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV 267
             +   +T + L    L  I       + +S++LE  DL  N          F+ +  + 
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRG 326
               +    +                    +    ++P  F   + +LKR   +    +G
Sbjct: 266 ---TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 327 ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLG-GFPSLQILSLENNRLTGTISKS 385
                 + +       +    +     +    I  +     +   L  +   L   +S  
Sbjct: 323 SE---TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 386 IGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKF 431
               ++L+  L        +  +      S L  L+         +
Sbjct: 380 RRAHAELDGTLQQAVGQIEL--QHATEEQSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (263), Expect = 1e-23
 Identities = 69/480 (14%), Positives = 136/480 (28%), Gaps = 69/480 (14%)

Query: 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
              +I  + ++ L   ++        ++ L LSGN L  + +    +  + L+ L LS N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSN 68

Query: 426 SLTLKFSHDWTPPF----QLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPD 481
            L        T        L  + L +  +     + L        L  +N  IS +   
Sbjct: 69  VLYE------TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCS 117

Query: 482 WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNL 541
                 N    + L+NN++                   +               V  L+L
Sbjct: 118 RGQGKKN----IYLANNKIT-----------------MLRDLDEGC-----RSRVQYLDL 151

Query: 542 SKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPD 601
             N+         + SS  L +L+L  N +   +      F  L  L+L++N     +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK-LAFMGP 208

Query: 602 SMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVL 661
                  +  +SL NN L   +         L   DL  NG               +  +
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 662 SLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYY 721
           + ++ K       + C  +   +          +         A+ +++ + LS      
Sbjct: 268 AKQTVKKLTGQNEEEC--TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS------ 319

Query: 722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALN 781
                +G     +  +     +          + ID    +    + +  +     + L 
Sbjct: 320 ----GQGSETERLECERENQAR---------QREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 782 LSNNNLTGQITPRIGQLKSLDFLDLSRNH--FFGGIPSSLSRLRLLSVMDLSYNNFSGKI 839
                L  Q++        LD                   S L+LL  +   Y     + 
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 47/279 (16%)

Query: 575 LPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLT 634
           + +     +   I  + ++S    +        ++  L L  N LS    +     ++L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 635 LMDLGKNGLSGEIPTWIG-----------------ESLPNLVVLSLRSNKFHGNIPFQLC 677
           L++L  N L  E                          P++  L   +N     +     
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSR- 118

Query: 678 YLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFD 737
                + + L+ N I+ +        + +       L +  N    +    +        
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQY-----LDLKLNEIDTVNFAELA------- 165

Query: 738 TWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797
                     +    ++ ++L  N +    ++  +    L  L+LS+N L   + P    
Sbjct: 166 ----------ASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
              + ++ L  N     I  +L   + L   DL  N F 
Sbjct: 213 AAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 37/230 (16%), Positives = 76/230 (33%), Gaps = 42/230 (18%)

Query: 622 GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSH 681
            +     NG++  +  +  + L  +    + +S  N+  L L  N         L   + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 682 IQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG 741
           +++L+LS N +   +     + + +       L + +NY   L                 
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRT-----LDLNNNYVQEL----------------- 95

Query: 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL 801
                  +   I+ +  ++N +  +V        G   + L+NN +T       G    +
Sbjct: 96  ------LVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 802 DFLDLSRNHF----FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQR 847
            +LDL  N      F  + +S   L  L   +L YN     +       +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHL---NLQYNFIY-DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 24/228 (10%), Positives = 47/228 (20%), Gaps = 30/228 (13%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
            I  +L   Q+L + DL  N F    + +F     ++  +A                 + 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTV 285

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
             +                  +   L  L   +  L                  L     
Sbjct: 286 PTLGHYGAYCCEDLPA----PFADRLIALKRKEHALLSGQG--------SETERLECERE 333

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
           +                    ID        ++   +       +  ++     L   + 
Sbjct: 334 NQA--------------RQREIDALKEQYR-TVIDQVTLRKQAKI-TLEQKKKALDEQVS 377

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSE 330
                 A L      +    E+       S L+ L            E
Sbjct: 378 NGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  141 bits (357), Expect = 6e-36
 Identities = 106/550 (19%), Positives = 185/550 (33%), Gaps = 108/550 (19%)

Query: 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKL 163
           INP  +    L       +N +   +P    ++   +E   + +++    P   G   ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 164 QVLDLRFNNLFSSGNLDWLSY---------LSSLRYLDLADCKLSKFSNWVQVLSNLRSL 214
            V  LR      +  L+ L+             L  L  +   L++         +L+SL
Sbjct: 61  AVSRLRDCLDRQAHELE-LNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSL 116

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274
                    L  +             LE + +SNN L     P L N SS L   ID+ +
Sbjct: 117 LVDNNNLKALSDL----------PPLLEYLGVSNNQLEKL--PELQN-SSFLK-IIDVDN 162

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQN 334
           N L   +P       SL  +   +NQL E+P+   N+  L  +    N L+ +L +   +
Sbjct: 163 NSLK-KLP---DLPPSLEFIAAGNNQLEELPEL-QNLPFLTAIYADNNSLK-KLPDLPLS 216

Query: 335 VSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLEL 394
                     LE +    N +   +P+L   P L  +  +NN L  T+      L  L +
Sbjct: 217 ----------LESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNV 264

Query: 395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPR 454
                  L       L  +L+ LD  +   + L                           
Sbjct: 265 RDNYLTDL-----PELPQSLTFLDVSENIFSGL-------------------------SE 294

Query: 455 FPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSY 514
            P  L        L+ S+  I  +      DL   L  LN+SNN++  +LP L  + +  
Sbjct: 295 LPPNLYY------LNASSNEIRSLC-----DLPPSLEELNVSNNKLI-ELPALPPRLER- 341

Query: 515 GPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGR 574
              +  S N     +P LP N+  L++  N       F     S  +  L ++++L    
Sbjct: 342 ---LIASFNHLAE-VPELPQNLKQLHVEYNPLR---EFPDIPES--VEDLRMNSHLAE-- 390

Query: 575 LPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLT 634
           +P+      +L  L++  N    E PD    +     L + +  +            +L 
Sbjct: 391 VPEL---PQNLKQLHVETNP-LREFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLE 443

Query: 635 LMDLGKNGLS 644
                 +   
Sbjct: 444 DDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (343), Expect = 4e-34
 Identities = 100/501 (19%), Positives = 166/501 (33%), Gaps = 92/501 (18%)

Query: 208 LSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV 267
             N++S T  Y  + +    + P            + D  +                   
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH--------------- 74

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE 327
             ++L +  L  S+P    H   L  L    N L E+P+   ++ SL     +   L   
Sbjct: 75  -ELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129

Query: 328 LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIG 387
                            LE+L ++ N++   +P+L     L+I+ ++NN L     K   
Sbjct: 130 P--------------PLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK----KLPD 170

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG 447
               LE +    N L  +       NL  L  +   +NSL          P  L +I  G
Sbjct: 171 LPPSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG 223

Query: 448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDL 507
           +  +    P+       T  +   N  +  + PD        L  LN+ +N +   LP+L
Sbjct: 224 NNILE-ELPELQNLPFLTT-IYADNNLLKTL-PDLP----PSLEALNVRDNYLT-DLPEL 275

Query: 508 SRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLS 567
            +        +DVS N F G +  LPPN+  LN S N+         S     L  L++S
Sbjct: 276 PQSLTF----LDVSENIFSG-LSELPPNLYYLNASSNEIRSLCDLPPS-----LEELNVS 325

Query: 568 NNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS------G 621
           NN L   LP        L  L  + N    E+P+    L+    L +  N L        
Sbjct: 326 NNKLI-ELPAL---PPRLERLIASFNH-LAEVPELPQNLK---QLHVEYNPLREFPDIPE 377

Query: 622 GLPSFFMNG---------SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI 672
            +    MN            L  + +  N L  E P    +   ++  L + S +     
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFP----DIPESVEDLRMNSERVVDPY 432

Query: 673 PFQLCYLSHIQILDLSLNNIS 693
            F       ++      ++  
Sbjct: 433 EFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (288), Expect = 5e-27
 Identities = 96/558 (17%), Positives = 179/558 (32%), Gaps = 127/558 (22%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTK------NS 343
            L+     S+ L E+P    N+ S      +++E               +        + 
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
               L L    ++ ++P+L   P L+ L    N LT  + +    L  L +   +  +L 
Sbjct: 72  QAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 404 GVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQN 463
            +           L+ L +S+N L                          + P+   S  
Sbjct: 128 DLPP--------LLEYLGVSNNQLE-------------------------KLPELQNSSF 154

Query: 464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGI 518
             + +DV N  +  + PD        L ++   NN+++       LP L+         I
Sbjct: 155 LKI-IDVDNNSLKKL-PDLP----PSLEFIAAGNNQLEELPELQNLPFLTA--------I 200

Query: 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
              +N     +P LP ++ S+    N     +  L ++    LT +   NNLL   LPD 
Sbjct: 201 YADNNSLKK-LPDLPLSLESIVAGNNILE-ELPELQNLPF--LTTIYADNNLLK-TLPD- 254

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
                SL  LN+ +N    ++P+    L  +       + LS   P+       L  ++ 
Sbjct: 255 --LPPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNA 304

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
             N +   +     +  P+L  L++ +NK    +P     L   + L  S N+++ + P+
Sbjct: 305 SSNEIR-SLC----DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEV-PE 354

Query: 699 CFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDL 758
              N           L +  N            PL  F                  + DL
Sbjct: 355 LPQNLK--------QLHVEYN------------PLREFPD------------IPESVEDL 382

Query: 759 SSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS 818
             N    +V E       L  L++  N L  +       ++ L    ++          +
Sbjct: 383 RMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPESVEDLR---MNSERVVDPYEFA 435

Query: 819 LSRLRLLSVMDLSYNNFS 836
                 L      +++  
Sbjct: 436 HETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (274), Expect = 3e-25
 Identities = 73/326 (22%), Positives = 121/326 (37%), Gaps = 60/326 (18%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
            +      L+ L   + +    S  P          L  L +S+ Q    +P +L N S 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLP--------PLLEYLGVSNNQLEK-LP-ELQNSSF 154

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
           L+++D+  N+L    +L       SL ++   + +L +       L NL  LT +Y    
Sbjct: 155 LKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNN 205

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
            L  +  P L       SLE I   NN L              L   I   +N L  ++P
Sbjct: 206 SLKKL--PDLPL-----SLESIVAGNNILEE---LPELQNLPFLT-TIYADNNLLK-TLP 253

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
                  SL  L++  N L ++P+   +++ L      ++ L                  
Sbjct: 254 ---DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP-------------- 296

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
            +L +L  + NEI  ++ DL   PSL+ L++ NN+L   +     +L +L     S N L
Sbjct: 297 PNLYYLNASSNEIR-SLCDL--PPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHL 349

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLT 428
             V          +L  L +  N L 
Sbjct: 350 AEVPEL-----PQNLKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.4 bits (217), Expect = 5e-18
 Identities = 81/480 (16%), Positives = 142/480 (29%), Gaps = 137/480 (28%)

Query: 360 PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDT 419
           P       LQ     ++ LT  +      +        + +                +  
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAV 62

Query: 420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIG--PRFPKWLQSQNQTVALDVSNAGISD 477
            +L D               Q   + L +  +   P  P  L+S      L  S   +++
Sbjct: 63  SRLRDCLDR-----------QAHELELNNLGLSSLPELPPHLES------LVASCNSLTE 105

Query: 478 IVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVS 537
           + P+    L + L   N +                                +  LPP + 
Sbjct: 106 L-PELPQSLKS-LLVDNNNLKA-----------------------------LSDLPPLLE 134

Query: 538 SLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG 597
            L +S N+    +  L + S   L  +D+ NN L  +LPD      SL  +   NN    
Sbjct: 135 YLGVSNNQLE-KLPELQNSSF--LKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQL-- 185

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
           E    +  L  + ++   NNSL             L  +  G N L  E+P    ++LP 
Sbjct: 186 EELPELQNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILE-ELPEL--QNLPF 238

Query: 658 LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717
           L  +   +N     +P     L  + + D  L +    +P+   +               
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQS--------------- 278

Query: 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVG- 776
                                              +  +D+S N         + +L   
Sbjct: 279 -----------------------------------LTFLDVSENIF-----SGLSELPPN 298

Query: 777 LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
           L  LN S+N    +I        SL+ L++S N     +P+   RL  L     S+N+ +
Sbjct: 299 LYYLNASSN----EIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERL---IASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 52/310 (16%), Positives = 94/310 (30%), Gaps = 51/310 (16%)

Query: 555 SISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL 614
           ++S+  L      ++ L+  +P       S      A + +    P      R +    L
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPF 674
            +               Q   ++L   GLS  +P    E  P+L  L    N     +P 
Sbjct: 66  RDCLDR-----------QAHELELNNLGLS-SLP----ELPPHLESLVASCNSLT-ELPE 108

Query: 675 QLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLI 734
               L  + + + +L  +S + P   +            L + +N    L        L 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPLLEY------------LGVSNNQLEKLPELQNSSFLK 156

Query: 735 FFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG----- 789
             D       +   +   ++ I   +N+L  + L E+ +L  L A+   NN+L       
Sbjct: 157 IIDVDNNSLKKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLPDLP 214

Query: 790 -----------QIT--PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
                       +   P +  L  L  +    N     +P     L  L+V D    +  
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLP 273

Query: 837 GKIPKGTQLQ 846
                 T L 
Sbjct: 274 ELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 61/324 (18%), Positives = 104/324 (32%), Gaps = 69/324 (21%)

Query: 531 LLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPDCWFQFDSLAIL 588
            L      L L+          L S+      L  L  S N L+  LP+      SL + 
Sbjct: 68  CLDRQAHELELNNLG-------LSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVD 119

Query: 589 NLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
           N    +     P        +  L + NN L   LP    N S L ++D+  N L  ++P
Sbjct: 120 NNNLKALSDLPP-------LLEYLGVSNNQLEK-LPELQ-NSSFLKIIDVDNNSLK-KLP 169

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
               +  P+L  ++  +N+    +P +L  L  +  +    N++  + P    +      
Sbjct: 170 ----DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL-PDLPLSLE---- 218

Query: 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVL 768
               ++   +N             L      +         L  +  I   +N L     
Sbjct: 219 ----SIVAGNN------------ILEELPELQN--------LPFLTTIYADNNLL----- 249

Query: 769 EEIMDLVG-LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
           + + DL   L ALN+ +N LT  +      L  LD  +   +     +      L  L  
Sbjct: 250 KTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG----LSELPPNLYYL-- 302

Query: 828 MDLSYNNFSGKIPKGTQLQRFGAS 851
            + S N           L+    S
Sbjct: 303 -NASSNEIRSLCDLPPSLEELNVS 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  141 bits (357), Expect = 1e-35
 Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 20/293 (6%)

Query: 139 LSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKL 198
              L L   +       +  +   L+ L+L  N + S+      + L +LR L L   +L
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 199 SKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPW 258
                   V + L +LT L +    +  +       +    +L+ +++ +N L   I   
Sbjct: 93  KLIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDL---YNLKSLEVGDNDLV-YISHR 146

Query: 259 LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRL 317
            F+  ++L   + L    L      A  H+  L  L L    +  +       +  LK L
Sbjct: 147 AFSGLNSLE-QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 318 VFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLEN 375
             S+         ++  ++       +L  L +    +T  +P   +     L+ L+L  
Sbjct: 206 EISHW-------PYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 376 NRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           N ++      + +L +L+ + L G  L  V+    F  L+ L  L +S N LT
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (338), Expect = 3e-33
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 24/302 (7%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
                 HL  L+L+ N  S      F   L  L  L L S +           LS L  L
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
           D+  N +    +      L +L+ L++ D  L   S+  +  S L SL  L L  C+L  
Sbjct: 110 DISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTS 166

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           I T +L H+     L V+ L +  +  +I  + F     L   +++       ++     
Sbjct: 167 IPTEALSHL---HGLIVLRLRHLNIN-AIRDYSFKRLYRL-KVLEISHWPYLDTMTPNCL 221

Query: 287 HMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSS 344
           +  +L  L +    L  VP   + ++  L+ L  SYN         I  +      +   
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP--------ISTIEGSMLHELLR 273

Query: 345 LEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSI-GQLSKLELLLLSGNS 401
           L+ + L   ++   +      G   L++L++  N+LT T+ +S+   +  LE L+L  N 
Sbjct: 274 LQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNP 331

Query: 402 LR 403
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (313), Expect = 4e-30
 Identities = 70/339 (20%), Positives = 129/339 (38%), Gaps = 40/339 (11%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
                ++DL  N +  ++    F    +L   ++L  N +    P AF ++ +LR L L 
Sbjct: 31  PTETRLLDLGKNRIK-TLNQDEFASFPHLE-ELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 298 SNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWLYLAFNEI 355
           SN+L+ +P      +S+L +L  S N+        I  +         +L+ L +  N++
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENK--------IVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 356 TGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
              I      G  SL+ L+LE   LT   ++++  L  L +L L   ++   I +  F  
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKR 198

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA 473
           L  L  L++S        + +      L ++ +  C +       ++       L++S  
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 474 GISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLP 533
            IS I      +L   L  + L   ++                   V    F G   L  
Sbjct: 259 PISTIEGSMLHELLR-LQEIQLVGGQLA-----------------VVEPYAFRG---L-- 295

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
             +  LN+S N+ + ++      S   L  L L +N L+
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 2e-26
 Identities = 60/294 (20%), Positives = 116/294 (39%), Gaps = 20/294 (6%)

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
                L LG   +  ++            LE ++L+ N ++ ++ P  FN   NL   + 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASF---PHLEELELNENIVS-AVEPGAFNNLFNLR-TLG 86

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFL-GNMSSLKRLVFSYNELRGELSE 330
           L SN+L       F  +++L  LD+  N++  +  ++  ++ +LK L    N+       
Sbjct: 87  LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND------- 139

Query: 331 FIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIG 387
            +  +S  +    +SLE L L    +T +IP   L     L +L L +  +      S  
Sbjct: 140 -LVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG 447
           +L +L++L +S       ++      L +L +L ++  +LT            L  + L 
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
              I       L    +   + +    ++ + P  F  L   L  LN+S N++ 
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY-LRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (275), Expect = 3e-25
 Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 54/346 (15%)

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
               ++L L  NR+             LE L L+ N +   +    F+NL +L TL L  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFW 484
           N L          P  +F                L        LD+S   I  ++   F 
Sbjct: 90  NRLK-------LIPLGVF-----------TGLSNLTK------LDISENKIVILLDYMFQ 125

Query: 485 DLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKN 544
           DL N L  L + +N++                   +S   F G   L   ++  L L K 
Sbjct: 126 DLYN-LKSLEVGDNDLV-----------------YISHRAFSG---L--NSLEQLTLEKC 162

Query: 545 KFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNLANNSFFGEIPDSM 603
             + SI        H L  L L +  ++  + D  F+    L +L +++  +   +  + 
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 604 SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSL 663
            +  ++ SLS+ + +L+        +   L  ++L  N +S  I   +   L  L  + L
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279

Query: 664 RSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
              +    +       L+++++L++S N ++ +    FH+   +  
Sbjct: 280 VGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 62/319 (19%), Positives = 116/319 (36%), Gaps = 29/319 (9%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAILNL 590
           +P     L+L KN+   +++     S   L  L+L+ N++S  +    F    +L  L L
Sbjct: 30  IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 591 ANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649
            +N     IP  + + L ++  L +  N +   L   F +   L  +++G N L   I  
Sbjct: 88  RSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709
                L +L  L+L            L +L  + +L L   NI+ I    F     +   
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 710 KSSNLSIISNYYYN---------LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
           + S+   +     N         L +    +  + +   +         L  ++ ++LS 
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--------LVYLRFLNLSY 257

Query: 761 NKLGGKVLEE--IMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPS 817
           N +    +E   + +L+ L  + L    L   + P     L  L  L++S N       S
Sbjct: 258 NPI--STIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

Query: 818 SLSRLRLLSVMDLSYNNFS 836
               +  L  + L  N  +
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 9e-21
 Identities = 68/352 (19%), Positives = 116/352 (32%), Gaps = 58/352 (16%)

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
           T  LD+    I  +  D F    + L  L L+ N +                   V    
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPH-LEELELNENIVS-----------------AVEPGA 75

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FD 583
           F+        N+ +L L  N+    I          LT LD+S N +   L D  FQ   
Sbjct: 76  FNNL-----FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLY 128

Query: 584 SLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642
           +L  L + +N     I     S L S+  L+L   +L+        +   L ++ L    
Sbjct: 129 NLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702
           ++  I  +  + L  L VL +    +   +     Y  ++  L ++  N++ +      +
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 703 FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK 762
              +                 L L    +  I               L  ++ I L   +
Sbjct: 247 LVYLRF---------------LNLSYNPISTIEGSMLHE--------LLRLQEIQLVGGQ 283

Query: 763 LGGKVLEEIM--DLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHF 811
           L   V+E      L  L  LN+S N LT  +   +   + +L+ L L  N  
Sbjct: 284 L--AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 51/284 (17%), Positives = 90/284 (31%), Gaps = 51/284 (17%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620
              LDL  N +     D +  F  L  L L  N      P + + L ++ +L L +N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS 680
                 F   S LT +D+ +N +   +  ++ + L NL  L +  N            L+
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWK 740
            ++ L L   N++ I  +   +   +       L +                        
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIV-----LRLRHL--------------------- 186

Query: 741 GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS 800
                         I  +               L  L  L +S+      +TP      +
Sbjct: 187 -------------NINAIRDYSFKR--------LYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 801 LDFLDLSRNHFFGGIPS-SLSRLRLLSVMDLSYNNFSGKIPKGT 843
           L  L ++  +    +P  ++  L  L  ++LSYN  S  I    
Sbjct: 226 LTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 7e-14
 Identities = 49/248 (19%), Positives = 91/248 (36%), Gaps = 31/248 (12%)

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
            +P+ +        L L  N +       F +   L  ++L +N +S  +      +L N
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81

Query: 658 LVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI 716
           L  L LRSN+    IP      LS++  LD+S N I  ++   F +   +      +L +
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK-----SLEV 135

Query: 717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVG 776
             N      L   +    F              L  ++ + L    L     E +  L G
Sbjct: 136 GDN-----DLV-YISHRAFSG------------LNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 777 LVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNF 835
           L+ L L + N+   I      +L  L  L++S   +   +  +      L+ + +++ N 
Sbjct: 178 LIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 836 SGKIPKGT 843
           +  +P   
Sbjct: 237 T-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 51/239 (21%), Positives = 83/239 (34%), Gaps = 39/239 (16%)

Query: 611 SLSLYNNSLS---GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNK 667
           ++  +         G+P+      +  L+DLGKN +   +      S P+L  L L  N 
Sbjct: 15  AVLCHRKRFVAVPEGIPT------ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 668 FHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR 727
                P     L +++ L L  N +  I    F   + +TK     L I  N    +   
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK-----LDISEN---KI--- 116

Query: 728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM--DLVGLVALNLSNN 785
            +L+  +F D            L  +K +++  N L    +       L  L  L L   
Sbjct: 117 VILLDYMFQD------------LYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKC 162

Query: 786 NLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
           NLT  I       L  L  L L   +       S  RL  L V+++S+  +   +    
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 3e-34
 Identities = 71/396 (17%), Positives = 132/396 (33%), Gaps = 58/396 (14%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
            I+ +L        + +           E I +L     +   ++         L +  +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
           +++L+L    +    +    +Y  +++ L +    +        V  N+  LT L L   
Sbjct: 71  VELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERN 127

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
           DL  +      +      L  + +SNN L   I    F  +++L  ++ L SN+L     
Sbjct: 128 DLSSLPRGIFHNT---PKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNRLTH--- 179

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
           +    + SL H ++  N L  +        +++ L  S+N         I  V      N
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNS--------INVVRGPV--N 225

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
             L  L L  N +T     L  +P L  + L  N L   +     ++ +LE L +S N L
Sbjct: 226 VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
             +        + +L  L LS N L                             +     
Sbjct: 285 VAL--NLYGQPIPTLKVLDLSHNHLL-------------------------HVERNQPQF 317

Query: 463 NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
           ++   L + +  I  +         + L  L LS+N
Sbjct: 318 DRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (320), Expect = 2e-31
 Identities = 64/317 (20%), Positives = 114/317 (35%), Gaps = 34/317 (10%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           +      +  L + +N     P P    ++  L+ L L     +        N  KL  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
            +  NNL      D     +SL+ L L+  +L+        LS + SL +  + Y  L  
Sbjct: 147 SMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLST 200

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           ++ P         ++E +D S+N +   +   +      L   + L  N L         
Sbjct: 201 LAIPI--------AVEELDASHNSIN-VVRGPVN---VELT-ILKLQHNNLT-DTA-WLL 245

Query: 287 HMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345
           +   L  +DL  N+L ++       M  L+RL  S N         +  ++       +L
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------LVALNLYGQPIPTL 297

Query: 346 EWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
           + L L+ N +     +   F  L+ L L++N +    +  +     L+ L LS N     
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCN 354

Query: 406 ISEALFSNLSSLDTLQL 422
              ALF N++       
Sbjct: 355 SLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 4e-29
 Identities = 73/429 (17%), Positives = 143/429 (33%), Gaps = 85/429 (19%)

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGE 327
           HID+ +  ++         + + + +   ++ +R++P   L +   ++ L  +  +    
Sbjct: 27  HIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ---- 80

Query: 328 LSEFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISK 384
               I+ + + +     +++ LY+ FN I   +P       P L +L LE N L+     
Sbjct: 81  ----IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 385 SIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI 444
                 KL  L +S N+L   I +  F   +SL  LQLS N LT                
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---------------- 178

Query: 445 FLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKL 504
                 +       L         +VS   +S +           +  L+ S+N +    
Sbjct: 179 -----HVDLSLIPSLFH------ANVSYNLLSTLAIPIA------VEELDASHNSIN--- 218

Query: 505 PDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYL 564
                          V               ++ L L  N  +   ++L +     L  +
Sbjct: 219 --------------VVRGPVN--------VELTILKLQHNNLT-DTAWLLNYPG--LVEV 253

Query: 565 DLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP 624
           DLS N L   +   + +   L  L ++NN     +      + ++  L L +N L   + 
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 625 SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI 684
                  +L  + L  N +   +      +   L  L+L  N +  N    L    ++  
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDCNSLRAL--FRNVAR 365

Query: 685 LDLSLNNIS 693
             +   +  
Sbjct: 366 PAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 8e-20
 Identities = 77/464 (16%), Positives = 147/464 (31%), Gaps = 121/464 (26%)

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426
               + ++              L+  +++    +++R  +  AL  +   ++ L L+D  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDL 486
                                                           I +I    F   
Sbjct: 81  ------------------------------------------------IEEIDTYAFAYA 92

Query: 487 TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKF 546
              +  L +  N ++                  +  + F        P ++ L L +N  
Sbjct: 93  HT-IQKLYMGFNAIR-----------------YLPPHVFQNV-----PLLTVLVLERNDL 129

Query: 547 SGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAILNLANNSFFGEIPDSMSF 605
           S S+      ++  LT L +SNN L  R+ D  FQ   SL  L L++N     +  S+  
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVDLSL-- 184

Query: 606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRS 665
           + S+   ++  N LS            +  +D   N ++  +    G     L +L L+ 
Sbjct: 185 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQH 235

Query: 666 NKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLG 725
           N    +  + L     +  +DLS N +  I+   F     + +     L I +N    L 
Sbjct: 236 NNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER-----LYISNNRLVAL- 287

Query: 726 LRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNN 785
                  L                +  +K++DLS N L   V         L  L L +N
Sbjct: 288 ------NLYGQP------------IPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHN 328

Query: 786 NLTGQITPRIGQLKSLDFLDLSRNHF----FGGIPSSLSRLRLL 825
           ++    T ++    +L  L LS N +       +  +++R  + 
Sbjct: 329 SIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 57/326 (17%), Positives = 113/326 (34%), Gaps = 32/326 (9%)

Query: 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
             + + + G   +   N   +    +     +      S   +  L+L++  +       
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA 88

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
           +    ++  L +  N+     P     +  +  L L  N LS      F N  +LT + +
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
             N L   I     ++  +L  L L SN+   ++   L  +  +   ++S N +S +   
Sbjct: 149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLSTLAIP 204

Query: 699 CF-------HN-FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
                    HN    +    +  L+I+   + NL     L+                   
Sbjct: 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY----------------- 247

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH 810
             +  +DLS N+L   +    + +  L  L +SNN L   +      + +L  LDLS NH
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 811 FFGGIPSSLSRLRLLSVMDLSYNNFS 836
               +  +  +   L  + L +N+  
Sbjct: 307 L-LHVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 61/316 (19%), Positives = 121/316 (38%), Gaps = 22/316 (6%)

Query: 532 LPPNVSSLNLSKNKFSGSISF-LCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAILN 589
           L  +    ++  +  +  + F    I+ +    +   N+ +  +LP      F  + +LN
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 590 LANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
           L +     EI     ++  +I  L +  N++    P  F N   LT++ L +N LS  +P
Sbjct: 76  LNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
             I  + P L  LS+ +N             + +Q L LS N ++ +      +      
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---- 189

Query: 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVL 768
               + ++  N    L +   +  L               +   + I+ L  N L     
Sbjct: 190 ----HANVSYNLLSTLAIPIAVEELDASHN--SINVVRGPVNVELTILKLQHNNL--TDT 241

Query: 769 EEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
             +++  GLV ++LS N L  +I      +++ L+ L +S N     +      +  L V
Sbjct: 242 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKV 299

Query: 828 MDLSYNNFSGKIPKGT 843
           +DLS+N+    + +  
Sbjct: 300 LDLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 47/297 (15%), Positives = 96/297 (32%), Gaps = 40/297 (13%)

Query: 549 SISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFD--SLAILNLANNSFFGEIPDSMSFL 606
               + S   +   + D+  ++ +  +   +      +  I+   N++        +   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN 666
           R +  L+L +  +       F     +  + +G N +   +P  + +++P L VL L  N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 667 KFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGL 726
                          +  L +S NN+  I    F   T++                 L L
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN---------------LQL 172

Query: 727 RGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNN 786
               +  +             S++  +   ++S N      L  +   + +  L+ S+N+
Sbjct: 173 SSNRLTHVDL-----------SLIPSLFHANVSYNL-----LSTLAIPIAVEELDASHNS 216

Query: 787 LTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
           +      R      L  L L  N+      + L     L  +DLSYN    KI    
Sbjct: 217 IN---VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHP 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (334), Expect = 3e-32
 Identities = 71/396 (17%), Positives = 132/396 (33%), Gaps = 58/396 (14%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
            I+ +L        + +           E I +L     +   ++         L +  +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
           +++L+L    +    +    +Y  +++ L +    +        V  N+  LT L L   
Sbjct: 77  VELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTVLVLERN 133

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
           DL  +      +      L  + +SNN L   I    F  +++L  ++ L SN+L     
Sbjct: 134 DLSSLPRGIFHNT---PKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNRLTH--- 185

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
           +    + SL H ++  N L  +        +++ L  S+N         I  V      N
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNS--------INVVRGPV--N 231

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
             L  L L  N +T     L  +P L  + L  N L   +     ++ +LE L +S N L
Sbjct: 232 VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
             +        + +L  L LS N L                             +     
Sbjct: 291 VAL--NLYGQPIPTLKVLDLSHNHLL-------------------------HVERNQPQF 323

Query: 463 NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
           ++   L + +  I  +         + L  L LS+N
Sbjct: 324 DRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (298), Expect = 1e-27
 Identities = 83/506 (16%), Positives = 155/506 (30%), Gaps = 69/506 (13%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           +      +  L + +N     P P    ++  L+ L L     +        N  KL  L
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFS--------------NWVQVLSNLR 212
            +  NNL      D     +SL+ L L+  +L+                 N +  L+   
Sbjct: 153 SMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 211

Query: 213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDL 272
           ++  L   +  +  +  P          L ++ L +N LT++   WL N     +  +DL
Sbjct: 212 AVEELDASHNSINVVRGPVN------VELTILKLQHNNLTDT--AWLLNYPG--LVEVDL 261

Query: 273 GSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFI 332
             N+L   +   F  M  L  L + +N+L  +  +   + +LK                 
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK----------------- 304

Query: 333 QNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKL 392
                          L L+ N +     +   F  L+ L L++N +    +  +     L
Sbjct: 305 --------------VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTL 347

Query: 393 ELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDW----TPPFQLFNIFLGS 448
           + L LS N        ALF N++         +                     +  L  
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

Query: 449 CKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLS 508
             +     K  ++Q +  A D  N      V      +T Q       N +++ ++ +L 
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTIN-----SVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

Query: 509 RKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
            +                G    +  N+    L K+  + S   L  + +HL        
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKL 522

Query: 569 NLLSGRLPDCWFQFDSLAILNLANNS 594
                R  +   +      L   N +
Sbjct: 523 RETQARRTEADAKQKETEDLEQENIA 548

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (292), Expect = 4e-27
 Identities = 74/432 (17%), Positives = 143/432 (33%), Gaps = 68/432 (15%)

Query: 207 VLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL 266
           + SNL+     Y  + D+               + +++   N+ +   +   L +    +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELR 325
              ++L   Q+      AF +  +++ L +  N +R +P     N+  L  LV   N+  
Sbjct: 78  E-LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-- 134

Query: 326 GELSEFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTI 382
                 + ++  G       L  L ++ N +   I D       SLQ L L +NRLT   
Sbjct: 135 ------LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT--- 184

Query: 383 SKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF 442
              +  +  L    +S N L         +   +++ L  S NS+             + 
Sbjct: 185 HVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSIN-------VVRGPVN 231

Query: 443 N----IFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
                + L    +      WL +    V +D+S   +  I+   F  +   L  L +SNN
Sbjct: 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNN 288

Query: 499 EMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS 558
               +L  L+                         P +  L+LS N              
Sbjct: 289 ----RLVALNLYGQP-------------------IPTLKVLDLSHNHLLHVERNQPQFDR 325

Query: 559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS 618
             L  L L +N +   L        +L  L L++N +  +     +  R++   ++ +  
Sbjct: 326 --LENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDW--DCNSLRALFRNVARPAVDDAD 378

Query: 619 LSGGLPSFFMNG 630
               +     +G
Sbjct: 379 QHCKIDYQLEHG 390

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (279), Expect = 2e-25
 Identities = 77/425 (18%), Positives = 148/425 (34%), Gaps = 61/425 (14%)

Query: 224 LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL 283
            P       +  N        D+  +  T  +Y    +++ N    +   ++ +      
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 284 AFGHMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
                  +  L+L   Q+ E+  +      ++++L   +N +R         +     +N
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--------YLPPHVFQN 121

Query: 343 -SSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
              L  L L  N+++ ++P       P L  LS+ NN L      +    + L+ L LS 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           N L  V      S + SL    +S N L+         P  +  +      I       +
Sbjct: 181 NRLTHV----DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV 230

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519
             +     L + +  ++D    W  +    L  ++LS NE++                  
Sbjct: 231 NVELTI--LKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELE-----------------K 268

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPD 577
           +  + F          +  L +S N+    +  L      +  L  LDLS+N L   +  
Sbjct: 269 IMYHPFVK-----MQRLERLYISNNR----LVALNLYGQPIPTLKVLDLSHNHLL-HVER 318

Query: 578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG-LPSFFMNGSQLTLM 636
              QFD L  L L +NS    +  S     ++ +L+L +N      L + F N ++  + 
Sbjct: 319 NQPQFDRLENLYLDHNS-IVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375

Query: 637 DLGKN 641
           D  ++
Sbjct: 376 DADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (275), Expect = 6e-25
 Identities = 68/411 (16%), Positives = 140/411 (34%), Gaps = 73/411 (17%)

Query: 296 LLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN--SSLEWLYLAFN 353
              N     P++    S+L+     Y+     +    Q+V  G      ++ + +    +
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDV---HIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 354 EITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF 411
            +   +P   L  F  +++L+L + ++    + +      ++ L +  N++R  +   +F
Sbjct: 62  TMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVF 119

Query: 412 SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVS 471
            N+  L  L L  N L+                      +         +  +   L +S
Sbjct: 120 QNVPLLTVLVLERNDLS---------------------SLPRGI---FHNTPKLTTLSMS 155

Query: 472 NAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL 531
           N  +  I  D F   T+ L  L LS+N +                   V  +        
Sbjct: 156 NNNLERIEDDTFQATTS-LQNLQLSSNRLT-----------------HVDLSLI------ 191

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLA 591
             P++   N+S N  S +++   +     +  LD S+N ++  +         L IL L 
Sbjct: 192 --PSLFHANVSYNLLS-TLAIPIA-----VEELDASHNSIN-VVRGPVNV--ELTILKLQ 240

Query: 592 NNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI 651
           +N+        +     +  + L  N L   +   F+   +L  + +  N L   +  + 
Sbjct: 241 HNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 652 GESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702
              +P L VL L  N    ++         ++ L L  N+I  +     H 
Sbjct: 298 Q-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.5 bits (214), Expect = 2e-17
 Identities = 61/316 (19%), Positives = 121/316 (38%), Gaps = 22/316 (6%)

Query: 532 LPPNVSSLNLSKNKFSGSISF-LCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAILN 589
           L  +    ++  +  +  + F    I+ +    +   N+ +  +LP      F  + +LN
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 590 LANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
           L +     EI     ++  +I  L +  N++    P  F N   LT++ L +N LS  +P
Sbjct: 82  LNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
             I  + P L  LS+ +N             + +Q L LS N ++ +      +      
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---- 195

Query: 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVL 768
               + ++  N    L +   +  L               +   + I+ L  N L     
Sbjct: 196 ----HANVSYNLLSTLAIPIAVEELDASHNSI--NVVRGPVNVELTILKLQHNNL--TDT 247

Query: 769 EEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
             +++  GLV ++LS N L  +I      +++ L+ L +S N     +      +  L V
Sbjct: 248 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKV 305

Query: 828 MDLSYNNFSGKIPKGT 843
           +DLS+N+    + +  
Sbjct: 306 LDLSHNHLL-HVERNQ 320

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 3e-17
 Identities = 57/326 (17%), Positives = 113/326 (34%), Gaps = 32/326 (9%)

Query: 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
             + + + G   +   N   +    +     +      S   +  L+L++  +       
Sbjct: 36  MQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA 94

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
           +    ++  L +  N+     P     +  +  L L  N LS      F N  +LT + +
Sbjct: 95  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
             N L   I     ++  +L  L L SN+   ++   L  +  +   ++S N +S +   
Sbjct: 155 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLSTLAIP 210

Query: 699 CF-------HN-FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
                    HN    +    +  L+I+   + NL     L+                   
Sbjct: 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY----------------- 253

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH 810
             +  +DLS N+L   +    + +  L  L +SNN L   +      + +L  LDLS NH
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

Query: 811 FFGGIPSSLSRLRLLSVMDLSYNNFS 836
               +  +  +   L  + L +N+  
Sbjct: 313 L-LHVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.8 bits (168), Expect = 6e-12
 Identities = 39/258 (15%), Positives = 83/258 (32%), Gaps = 41/258 (15%)

Query: 590 LANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649
                 +  I  ++ +      + +   +         +  +   ++    + +  ++P 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709
            + +S   + +L+L   +      +   Y   IQ L +  N I  + P  F N   +T  
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV- 127

Query: 710 KSSNLSIISNYYYNLGLRG----MLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGG 765
                         L L       L   IF +               +  + +S+N L  
Sbjct: 128 --------------LVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLER 161

Query: 766 KVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLL 825
              +       L  L LS+N LT  +      + SL   ++S N       S+L+    +
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIPIAV 213

Query: 826 SVMDLSYNNFSGKIPKGT 843
             +D S+N+ +  +    
Sbjct: 214 EELDASHNSIN-VVRGPV 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (331), Expect = 8e-32
 Identities = 73/328 (22%), Positives = 115/328 (35%), Gaps = 59/328 (17%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
             H+T L +  NN +   +P       +L  L +S  Q    +P     L +L +     
Sbjct: 60  PAHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 113

Query: 171 NNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
            +L +          S L  L +   +L+              L  L +    L   S P
Sbjct: 114 THLPAL--------PSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQL--ASLP 157

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
           +L        L  +   NN LT+     L  + S L   + +  NQL  S+P        
Sbjct: 158 ALPS-----ELCKLWAYNNQLTS-----LPMLPSGLQ-ELSVSDNQLA-SLPTLPS---E 202

Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
           L  L   +N+L  +P        LK L+ S N L   L              S L+ L +
Sbjct: 203 LYKLWAYNNRLTSLPALPSG---LKELIVSGNRLT-SLPVLP----------SELKELMV 248

Query: 351 AFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEAL 410
           + N +T ++P L     L  LS+  N+LT  + +S+  LS    + L GN L    SE  
Sbjct: 249 SGNRLT-SLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL----SERT 300

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPP 438
              L  + +       +        + P
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (271), Expect = 2e-24
 Identities = 60/295 (20%), Positives = 104/295 (35%), Gaps = 62/295 (21%)

Query: 160 LSKLQVLDLRFNNLFS-----SGNLDWL-----------SYLSSLRYLDLADCKLSKFSN 203
            +   VL++  + L +       ++  L           +    LR L+++  +L+    
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV 98

Query: 204 WVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS 263
              +   L  L+        LP + +           L  + +  N LT+     L  + 
Sbjct: 99  ---LPPGLLELSIFSNPLTHLPALPS----------GLCKLWIFGNQLTS-----LPVLP 140

Query: 264 SNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNE 323
             L   + +  NQL  S+P        L  L   +NQL  +P        L+ L  S N+
Sbjct: 141 PGLQ-ELSVSDNQL-ASLPALPSE---LCKLWAYNNQLTSLPMLPSG---LQELSVSDNQ 192

Query: 324 LRGELSEFIQNVSSGSTKN----------SSLEWLYLAFNEITGTIPDLGGFPSLQILSL 373
           L   L      +      N          S L+ L ++ N +T ++P L     L+ L +
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS--ELKELMV 248

Query: 374 ENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
             NRLT ++      L  L    +  N L  +       +LSS  T+ L  N L+
Sbjct: 249 SGNRLT-SLPMLPSGLLSLS---VYRNQLTRLPES--LIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (268), Expect = 5e-24
 Identities = 77/392 (19%), Positives = 128/392 (32%), Gaps = 103/392 (26%)

Query: 228 STPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGH 287
           +    +    +    V+++  + LT ++   L     ++   + +  N L  S+P     
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA---HIT-TLVIPDNNLT-SLPALPPE 82

Query: 288 MASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEW 347
              LR L++  NQL  +P     +  L         L                  S L  
Sbjct: 83  ---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP--------------SGLCK 125

Query: 348 LYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVIS 407
           L++  N++T ++P L   P LQ LS+ +N+L  ++     +L KL       N L     
Sbjct: 126 LWIFGNQLT-SLPVL--PPGLQELSVSDNQLA-SLPALPSELCKLW---AYNNQL----- 173

Query: 408 EALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
            +L    S L  L +SDN L                                        
Sbjct: 174 TSLPMLPSGLQELSVSDNQLA--------------------------------------- 194

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
                      +P    +L   L+  N     +      L          + VS N+   
Sbjct: 195 ----------SLPTLPSELYK-LWAYNNRLTSLPALPSGLKE--------LIVSGNRLTS 235

Query: 528 PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAI 587
            +P+LP  +  L +S N+ +   S     S   L  L +  N L+ RLP+      S   
Sbjct: 236 -LPVLPSELKELMVSGNRLT---SLPMLPSG--LLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 588 LNLANNSFFGEIPDSMSFLRSIGSLSLYNNSL 619
           +NL  N    E    +  LR I S   Y+  +
Sbjct: 289 VNLEGNP-LSERT--LQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 7e-22
 Identities = 74/373 (19%), Positives = 125/373 (33%), Gaps = 73/373 (19%)

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426
              +L++  + LT T+   +     +  L++  N+L      +L +    L TL++S N 
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-----TSLPALPPELRTLEVSGNQ 92

Query: 427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDL 486
           LT                           P         + L + +  ++ +       L
Sbjct: 93  LT-------------------------SLPVLP---PGLLELSIFSNPLTHLP-----AL 119

Query: 487 TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKF 546
            + L  L +  N++   LP L          + VS NQ    +P LP  +  L    N+ 
Sbjct: 120 PSGLCKLWIFGNQLT-SLPVLPPGLQE----LSVSDNQLAS-LPALPSELCKLWAYNNQL 173

Query: 547 SGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFL 606
           +   S     S   L  L +S+N L+  LP        L  L   NN     +P   S L
Sbjct: 174 T---SLPMLPSG--LQELSVSDNQLA-SLPT---LPSELYKLWAYNNRL-TSLPALPSGL 223

Query: 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN 666
           +    L +  N L+  LP      S+L  + +  N L+  +P         L+ LS+  N
Sbjct: 224 KE---LIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLPS----GLLSLSVYRN 271

Query: 667 KFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGL 726
           +    +P  L +LS    ++L  N +S            +T     +  II         
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERT---LQALREITSAPGYSGPIIRFDMAGASA 327

Query: 727 RGMLMPLIFFDTW 739
                 L      
Sbjct: 328 PRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 3e-21
 Identities = 74/357 (20%), Positives = 119/357 (33%), Gaps = 83/357 (23%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
               L++  + L  +P  L     +  LV   N L   L                L  L 
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLT-SLPALPPE----------LRTLE 87

Query: 350 LAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISE 408
           ++ N++T ++P    G   L I S     L           S L  L + GN L      
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLT----- 134

Query: 409 ALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVAL 468
           +L      L  L +SDN L             L           P  P  L        L
Sbjct: 135 SLPVLPPGLQELSVSDNQLA-----------SL-----------PALPSELCK------L 166

Query: 469 DVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGP 528
              N  ++ + P       + L  L++S+N++   LP L  +       +   +N+    
Sbjct: 167 WAYNNQLTSL-PMLP----SGLQELSVSDNQLA-SLPTLPSELYK----LWAYNNRLT-S 215

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPDCWFQFDSLA 586
           +P LP  +  L +S N+       L S+      L  L +S N L+  LP        L 
Sbjct: 216 LPALPSGLKELIVSGNR-------LTSLPVLPSELKELMVSGNRLT-SLPM---LPSGLL 264

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL 643
            L++  N     +P+S+  L S  +++L  N LS           ++T        +
Sbjct: 265 SLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLS-ERT--LQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.5 bits (201), Expect = 5e-16
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 99/423 (23%)

Query: 458 WLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPG 517
           W   +    A +  + G + +V      L N    LN+  + +   LPD           
Sbjct: 12  WSAWRRAAPAEE--SRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD----------- 57

Query: 518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD 577
                         LP ++++L +  N  +   S         L  L++S N L+  LP 
Sbjct: 58  -------------CLPAHITTLVIPDNNLT---SLPALPPE--LRTLEVSGNQLT-SLPV 98

Query: 578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637
                  L+I +              +    +  L ++ N L+  LP        L  + 
Sbjct: 99  LPPGLLELSIFSNPLTHL-------PALPSGLCKLWIFGNQLT-SLPVLP---PGLQELS 147

Query: 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP 697
           +  N L+  +P         L  L   +N+   ++P     L   Q L +S N ++  +P
Sbjct: 148 VSDNQLA-SLPALPS----ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLP 197

Query: 698 KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID 757
                           L   +N   +L                       ++   +K + 
Sbjct: 198 TLPSELY--------KLWAYNNRLTSL----------------------PALPSGLKELI 227

Query: 758 LSSNKLGGKVLEEIMDLVG-LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIP 816
           +S N+     L  +  L   L  L +S N LT  +      L S   L + RN     +P
Sbjct: 228 VSGNR-----LTSLPVLPSELKELMVSGNRLT-SLPMLPSGLLS---LSVYRNQ-LTRLP 277

Query: 817 SSLSRLRLLSVMDLSYNNFS----GKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEE 872
            SL  L   + ++L  N  S      + + T    +       +      P   + L   
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 873 SAP 875
           +A 
Sbjct: 338 AAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 77/401 (19%), Positives = 137/401 (34%), Gaps = 74/401 (18%)

Query: 453 PRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFD 512
            +    L + N    L+V  +G++ + PD    L   +  L + +N +   LP L  +  
Sbjct: 32  QKMRACLNNGNAV--LNVGESGLTTL-PD---CLPAHITTLVIPDNNLT-SLPALPPELR 84

Query: 513 SYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
           +    ++VS NQ    +P+LPP +  L++  N  +   +         L  L +  N L+
Sbjct: 85  T----LEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG-----LCKLWIFGNQLT 134

Query: 573 GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQ 632
             LP        L  L++++N     +P   S L     L  YNN L+  LP      S 
Sbjct: 135 -SLPV---LPPGLQELSVSDNQL-ASLPALPSELCK---LWAYNNQLTS-LPMLP---SG 182

Query: 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNI 692
           L  + +  N L+  +P         L  L   +N+   ++P     L   + L +S N +
Sbjct: 183 LQELSVSDNQLA-SLP----TLPSELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRL 233

Query: 693 SGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGL 752
           + + P                L +  N             L                   
Sbjct: 234 TSL-PVLPSELK--------ELMVSGNR------------LTSLPML----------PSG 262

Query: 753 IKIIDLSSNKLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811
           +  + +  N+L    L E ++ L     +NL  N L+ +    + ++ S          F
Sbjct: 263 LLSLSVYRNQL--TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

Query: 812 FGGIPS--SLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGA 850
                S    +R   L+  D       G+     +   FG 
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  122 bits (309), Expect = 1e-29
 Identities = 87/400 (21%), Positives = 147/400 (36%), Gaps = 40/400 (10%)

Query: 289 ASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEW 347
           A + ++DL  N + E+       +  L+ L          +     N   G +   SL  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLS---SLII 83

Query: 348 LYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTI--SKSIGQLSKLELLLLSGNSLR 403
           L L +N+    +      G  +L++L+L    L G +        L+ LE+L+L  N+++
Sbjct: 84  LKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 404 GVISEALFSNLSSLDTLQLSDNSLT-------LKFSHDWTPPFQLFNIFLGSC---KIGP 453
            +   + F N+     L L+ N +        L F        +L +I L       +G 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 454 RFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDS 513
                         LD+S  G  + +   F+D        +L  +               
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-----G 257

Query: 514 YGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLL 571
           +    D  +  F G   L    V + +LSK+K     + L S+ SH   L  L L+ N +
Sbjct: 258 HTNFKDPDNFTFKG---LEASGVKTCDLSKSKIF---ALLKSVFSHFTDLEQLTLAQNEI 311

Query: 572 SGRLPDCWF-QFDSLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMN 629
           + ++ D  F     L  LNL+ N F G I   M   L  +  L L  N +       F+ 
Sbjct: 312 N-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFH 669
              L  + L  N L   +P  I + L +L  + L +N + 
Sbjct: 370 LPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (283), Expect = 2e-26
 Identities = 85/340 (25%), Positives = 122/340 (35%), Gaps = 22/340 (6%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           S  +LQ L +L +                L  L  L L   QF          L+ L+VL
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 167 DLRFNNLFSSG-NLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
            L   NL  +  + ++   L+SL  L L D  + K         N+R    L L +  + 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVK 167

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH------IDLGSNQLHG 279
            I    LL+    K   ++ LS+  L +    WL                +DL  N    
Sbjct: 168 SICEEDLLNFQ-GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 280 SIPLAF---GHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRG----ELSE-F 331
           S+   F        ++ L L ++          N        F   E  G    +LS+  
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 332 IQNVSSGS-TKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQ 388
           I  +     +  + LE L LA NEI   I D    G   L  L+L  N L    S+    
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           L KLE+L LS N +R  + +  F  L +L  L L  N L 
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 5e-23
 Identities = 71/359 (19%), Positives = 115/359 (32%), Gaps = 72/359 (20%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
           H+ Y+DLS N+ +            +L+E + S              L  LQ L +    
Sbjct: 31  HVNYVDLSLNSIA------------ELNETSFS-------------RLQDLQFLKVEQQT 65

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP-- 230
                  +    LSSL  L L   +  +        + L +L  L L  C+L        
Sbjct: 66  PGLVIRNNTFRGLSSLIILKLDYNQFLQLET--GAFNGLANLEVLTLTQCNLDGAVLSGN 123

Query: 231 ------SLLHINYS----------------KSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
                 SL  +                   +   V+DL+ N + +     L N       
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 269 HIDLGSNQLH--------GSIPLAFGHMASLRHLDLLSNQLREVPKF----LGNMSSLKR 316
            + L S  L                    S+  LDL  N  +E            + ++ 
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 317 LVFSYNELRGELSEF-----IQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQ 369
           L+ S +   G            N +    + S ++   L+ ++I   +       F  L+
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLE 302

Query: 370 ILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
            L+L  N +      +   L+ L  L LS N L G I   +F NL  L+ L LS N + 
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 75/382 (19%), Positives = 142/382 (37%), Gaps = 37/382 (9%)

Query: 358 TIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL 417
            +P+L     +  + L  N +      S  +L  L+ L +   +   VI    F  LSSL
Sbjct: 24  QVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 418 DTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRF--PKWLQSQNQTVALDVSNAGI 475
             L+L  N      +  +     L  + L  C +        + +       L + +  I
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 476 SDIVPDWFWDLTNQLYYLNLSNNEMK----GKLPDLSRKFDSYG-----PGIDVSSNQFD 526
             I P  F+    + + L+L+ N++K      L +   K  +          D++     
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 527 GPIPLLP---PNVSSLNLSKNKFSGSIS--FLCSISSHLLTYLDLSNNLLSG-------- 573
                 P    ++++L+LS N F  S++  F  +I+   +  L LSN+   G        
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 574 -RLPDCWF---QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMN 629
               +  F   +   +   +L+ +  F  +    S    +  L+L  N ++    + F  
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILD 686
            + L  ++L +N L   I + + E+L  L VL L  N     +    F    L +++ L 
Sbjct: 322 LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL--GLPNLKELA 377

Query: 687 LSLNNISGIIPKCFHNFTAMTK 708
           L  N +  +    F   T++ K
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQK 399

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 7e-20
 Identities = 72/347 (20%), Positives = 129/347 (37%), Gaps = 37/347 (10%)

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAI 587
           +P LP +V+ ++LS N  +  ++         L +L +        + +  F+   SL I
Sbjct: 25  VPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83

Query: 588 LNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSL-SGGLPS-FFMNGSQLTLMDLGKNGLS 644
           L L  N  F ++     + L ++  L+L   +L    L   FF   + L ++ L  N + 
Sbjct: 84  LKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 645 GEIPTWIGESLPNLVVLSLRSNKFH----------GNIPFQLCYLSHIQILDLSLNNISG 694
              P     ++    VL L  NK                F L  LS I + D++   +  
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 695 IIPKCFHNFTAMTKEKSSN---LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL- 750
                    T++T    S       ++  +++      +  LI  +++  G     +   
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 751 --------GL----IKIIDLSSNKLGGKVLEEIMD-LVGLVALNLSNNNLTGQITPRI-G 796
                   GL    +K  DLS +K+   +L+ +      L  L L+ N +  +I      
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW 320

Query: 797 QLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
            L  L  L+LS+N            L  L V+DLSYN+    +   +
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 52/241 (21%), Positives = 87/241 (36%), Gaps = 23/241 (9%)

Query: 85  LGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELAL 144
           L L      D     L      +  K   +T LDLS N F  S    F  ++      +L
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 145 SSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLS-YLSSLRYLDLADCKLSKFSN 203
                         + S          N     N  +     S ++  DL+  K+     
Sbjct: 245 IL------------SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

Query: 204 WVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS 263
              V S+   L  L L   ++  I   +   +     L  ++LS N+L  SI   +F   
Sbjct: 293 --SVFSHFTDLEQLTLAQNEINKIDDNAFWGL---THLLKLNLSQNFLG-SIDSRMFENL 346

Query: 264 SNLVDHIDLGSNQLHGSIPL-AFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSY 321
             L   +DL  N +  ++   +F  + +L+ L L +NQL+ VP      ++SL+++    
Sbjct: 347 DKLE-VLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

Query: 322 N 322
           N
Sbjct: 405 N 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 9e-13
 Identities = 43/267 (16%), Positives = 85/267 (31%), Gaps = 36/267 (13%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIG---------SLGKLSELALSSAQFAGPIPHQLGNL 160
            ++    LDL++N        + +           L  ++   ++               
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 161 SKLQVLDLRFNNLFSS--GNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR------ 212
           + +  LDL  N    S           + ++ L L++      S       +        
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 213 ----SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
                +    L    +  +      H      LE + L+ N +   I    F   ++L  
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHF---TDLEQLTLAQNEIN-KIDDNAFWGLTHL-L 326

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGE 327
            ++L  N L       F ++  L  LDL  N +R +       + +LK L    N+L   
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL--- 383

Query: 328 LSEFIQNVSSGS-TKNSSLEWLYLAFN 353
                ++V  G   + +SL+ ++L  N
Sbjct: 384 -----KSVPDGIFDRLTSLQKIWLHTN 405

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (300), Expect = 2e-29
 Identities = 46/315 (14%), Positives = 92/315 (29%), Gaps = 51/315 (16%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
                 +      +      +       +      L L S       P Q   LS LQ +
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHM 109

Query: 167 DLRFNNLFSSGNL-DWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC--- 222
            +    L     L D +   + L  L LA   L         +++L  L  L +  C   
Sbjct: 110 TIDAAGLME---LPDTMQQFAGLETLTLARNPLRALPAS---IASLNRLRELSIRACPEL 163

Query: 223 -DLPPI--STPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG 279
            +LP    ST +        +L+ + L    +                            
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------------------------- 196

Query: 280 SIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS 339
           S+P +  ++ +L+ L + ++ L  +   + ++  L+ L                      
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR---- 252

Query: 340 TKNSSLEWLYLA-FNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLL 397
              + L+ L L   + +  T+P  +     L+ L L        +   I QL    ++L+
Sbjct: 253 ---APLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 398 SGNSLRGVISEALFS 412
             +    +      +
Sbjct: 309 PPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (297), Expect = 5e-29
 Identities = 54/338 (15%), Positives = 113/338 (33%), Gaps = 36/338 (10%)

Query: 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS 161
           G+ +           L    +      +  +   L +      +          +  N +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGST----ALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSN 56

Query: 162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY 221
             Q+       L ++ +L   +       L+L    L +F +       L  L ++ +  
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD---QAFRLSHLQHMTIDA 113

Query: 222 CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDL-GSNQLH-- 278
             L  +  P    +     LE + L+ N L  ++   + ++ + L   + +    +L   
Sbjct: 114 AGL--MELPD--TMQQFAGLETLTLARNPLR-ALPASIASL-NRLR-ELSIRACPELTEL 166

Query: 279 ------GSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFI 332
                          + +L+ L L    +R +P  + N+ +LK L    + L   L   I
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 333 QNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLEN-NRLTGTISKSIGQLS 390
            ++         LE L L         P   GG   L+ L L++ + L  T+   I +L+
Sbjct: 226 HHL-------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLT 277

Query: 391 KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           +LE L L G      +   + + L +   + +  +   
Sbjct: 278 QLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 3e-23
 Identities = 62/418 (14%), Positives = 103/418 (24%), Gaps = 114/418 (27%)

Query: 286 GHMASLRHLDLL-SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS 344
            H +   +L    S  LR     L           +        +             ++
Sbjct: 9   HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----------NN 57

Query: 345 LEWLYLAFNEITGTIPDLGG--FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
            +        +  T   L     P    L L +  L         +LS L+ + +    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
             +         + L+TL L+ N L                                   
Sbjct: 117 MELPDT--MQQFAGLETLTLARNPLR---------------------------------- 140

Query: 463 NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSS 522
                           +P     L   L  L++       +LP+             ++S
Sbjct: 141 ---------------ALPASIASLNR-LRELSIRACPELTELPE------------PLAS 172

Query: 523 NQFDGPIPLLPPNVSSLNLSKNKFSG---SISFLCSISSHLLTYLDLSNNLLSGRLPDCW 579
               G    L  N+ SL L          SI+ L +     L  L + N+ LS  L    
Sbjct: 173 TDASGEHQGLV-NLQSLRLEWTGIRSLPASIANLQN-----LKSLKIRNSPLSA-LGPAI 225

Query: 580 FQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639
                L  L+L   +     P        +  L L + S              L      
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS-------------NLL----- 267

Query: 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP 697
                  +P  I   L  L  L LR       +P  +  L    I+ +  +  + +  
Sbjct: 268 ------TLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 7e-21
 Identities = 46/315 (14%), Positives = 99/315 (31%), Gaps = 61/315 (19%)

Query: 535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS 594
           N      +      +   L   +      L+L +  L  + PD  F+   L  + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 595 FFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG-- 652
              E+PD+M     + +L+L  N L   LP+   + ++L  + +       E+P  +   
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 653 ------ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM 706
                 + L NL  L L       ++P  +  L +++ L +  + +S +     H+   +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKL 231

Query: 707 TKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766
            +                                               +DL        
Sbjct: 232 EE-----------------------------------------------LDLRGCTALRN 244

Query: 767 VLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLS 826
                     L  L L + +    +   I +L  L+ LDL        +PS +++L    
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304

Query: 827 VMDLSYNNFSGKIPK 841
           ++ +   +   ++ +
Sbjct: 305 IILVP-PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 4e-19
 Identities = 49/287 (17%), Positives = 87/287 (30%), Gaps = 33/287 (11%)

Query: 560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIG--SLSLYNN 617
                D +    + R  +      +   +            D +      G  +L L + 
Sbjct: 37  RHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91

Query: 618 SLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC 677
            L    P      S L  M +   GL  E+P  +      L  L+L  N     +P  + 
Sbjct: 92  PLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIA 147

Query: 678 YLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS-SNLSIISNYYYNLGLRGMLMPLIFF 736
            L+ ++ L +        +P+   +  A  + +   NL  +   +  +      +P    
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLP---- 199

Query: 737 DTWKGGQYEYKSILGLI--KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR 794
                      SI  L   K + + ++ L   +   I  L  L  L+L          P 
Sbjct: 200 ----------ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 795 IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841
            G    L  L L        +P  + RL  L  +DL       ++P 
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 57/375 (15%), Positives = 101/375 (26%), Gaps = 90/375 (24%)

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
           S  E LY   +       D       Q     +     +  +     +  ++   +G +L
Sbjct: 12  SGRENLYFQGSTALRPYHD--VLSQWQRHYNADRNRWHSAWR-QANSNNPQIETRTGRAL 68

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
           +        +       L+L    L                          +FP      
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-------------------------QFPDQAFRL 103

Query: 463 NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSS 522
           +    + +  AG+ ++ PD        L  L L+ N ++  LP                 
Sbjct: 104 SHLQHMTIDAAGLMEL-PDTMQQFAG-LETLTLARNPLR-ALPA---------------- 144

Query: 523 NQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD----- 577
                                     SI+ L       L  L +        LP+     
Sbjct: 145 --------------------------SIASLNR-----LRELSIRACPELTELPEPLAST 173

Query: 578 ----CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQL 633
                     +L  L L        +P S++ L+++ SL + N+ LS  L     +  +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693
             +DL         P   G     L  L L+       +P  +  L+ ++ LDL      
Sbjct: 232 EELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 694 GIIPKCFHNFTAMTK 708
             +P       A   
Sbjct: 291 SRLPSLIAQLPANCI 305

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 29/187 (15%)

Query: 655 LPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL 714
                 L  + +         L         D +  + +                 S+N 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------------SNNP 58

Query: 715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDL 774
            I +     L        L+   T  G              ++L S  L  +  ++   L
Sbjct: 59  QIETRTGRALKA---TADLLEDATQPG-----------RVALELRSVPLP-QFPDQAFRL 103

Query: 775 VGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNN 834
             L  + +    L  ++   + Q   L+ L L+RN     +P+S++ L  L  + +    
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACP 161

Query: 835 FSGKIPK 841
              ++P+
Sbjct: 162 ELTELPE 168

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  118 bits (299), Expect = 2e-29
 Identities = 64/324 (19%), Positives = 121/324 (37%), Gaps = 37/324 (11%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
           HL  +  S        +P+ +      + L L + +          NL  L  L L  N 
Sbjct: 32  HLRVVQCSDLGLEK--VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
           + S  +    + L  L  L L+  +L +    +      ++L  L +   ++  +     
Sbjct: 88  I-SKISPGAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQELRVHENEITKVRKSVF 141

Query: 233 LHINYSKSLEVIDLSNNYLTNS-IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL 291
             +N    + V++L  N L +S I    F     L  +I +    +  +IP   G   SL
Sbjct: 142 NGLN---QMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT-TIP--QGLPPSL 194

Query: 292 RHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLY 349
             L L  N++ +V    L  +++L +L  S+N +          V +GS  N   L  L+
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--------AVDNGSLANTPHLRELH 246

Query: 350 LAFNEITGTIPD-LGGFPSLQILSLENNRLTG------TISKSIGQLSKLELLLLSGNSL 402
           L  N++   +P  L     +Q++ L NN ++              + +    + L  N +
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 403 RGV-ISEALFSNLSSLDTLQLSDN 425
           +   I  + F  +     +QL + 
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (287), Expect = 9e-28
 Identities = 51/274 (18%), Positives = 93/274 (33%), Gaps = 17/274 (6%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
               L++L  L L  N  S      F   L KL  L LS  Q    +P ++     LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLKE-LPEKM--PKTLQEL 126

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
            +  N +         + L+ +  ++L    L            ++ L+ + +   ++  
Sbjct: 127 RVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
           I            SL  + L  N +T  +        +NL   + L  N +      +  
Sbjct: 186 IPQGLP------PSLTELHLDGNKIT-KVDAASLKGLNNL-AKLGLSFNSISAVDNGSLA 237

Query: 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346
           +   LR L L +N+L +VP  L +   ++ +    N +   +          +TK +S  
Sbjct: 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS 296

Query: 347 WLYLAFNEITGT-IPD--LGGFPSLQILSLENNR 377
            + L  N +    I             + L N +
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  111 bits (280), Expect = 7e-27
 Identities = 67/340 (19%), Positives = 120/340 (35%), Gaps = 68/340 (20%)

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
             +LDL+ N + +         L +L  L L + K+SK S      + L  L  LYL   
Sbjct: 54  TALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISP--GAFAPLVKLERLYLSKN 110

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI- 281
            L  +           K+L+ + +  N +T  +   +FN  + ++  ++LG+N L  S  
Sbjct: 111 QLKELPEKMP------KTLQELRVHENEIT-KVRKSVFNGLNQMI-VVELGTNPLKSSGI 162

Query: 282 -PLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST 340
              AF  M  L ++ +    +  +P+ L                                
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGL----------------------P--------- 191

Query: 341 KNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS 398
              SL  L+L  N+IT  +    L G  +L  L L  N ++   + S+     L  L L+
Sbjct: 192 --PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW 458
            N L  V      ++   +  + L +N+++                 +GS    P     
Sbjct: 249 NNKLVKV--PGGLADHKYIQVVYLHNNNIS----------------AIGSNDFCPPGYNT 290

Query: 459 LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
            ++    V+L  +     +I P  F  +      + L N 
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYV-RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 2e-25
 Identities = 69/388 (17%), Positives = 122/388 (31%), Gaps = 99/388 (25%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWL 348
            LR +      L +VPK L        L    N         I  +  G  KN  +L  L
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN--------KITEIKDGDFKNLKNLHTL 81

Query: 349 YLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI 406
            L  N+I+  I          L+ L L  N+L             L+ L +  N +   +
Sbjct: 82  ILINNKIS-KISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT-KV 136

Query: 407 SEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTV 466
            +++F+ L+ +  ++L  N L                                       
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLK-------------------------------------- 158

Query: 467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526
                    S I    F  +   L Y+ +++  +   +P                     
Sbjct: 159 --------SSGIENGAFQGMKK-LSYIRIADTNIT-TIP--------------------- 187

Query: 527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLA 586
                LPP+++ L+L  NK +  +        + L  L LS N +S            L 
Sbjct: 188 ---QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG------GLPSFFMNGSQLTLMDLGK 640
            L+L NN    ++P  ++  + I  + L+NN++S         P +    +  + + L  
Sbjct: 244 ELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 641 NGLS-GEIPTWIGESLPNLVVLSLRSNK 667
           N +   EI       +     + L + K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 9e-24
 Identities = 69/344 (20%), Positives = 124/344 (36%), Gaps = 66/344 (19%)

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRG 326
             +      L   +P           LDL +N++ E+      N+ +L  L+   N+   
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--- 87

Query: 327 ELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKS 385
                I  +S G+      LE LYL+ N++   +P+     +LQ L +  N +T  + KS
Sbjct: 88  -----ISKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKS 139

Query: 386 I-GQLSKLELLLLSGNSLRGV-ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF- 442
           +   L+++ ++ L  N L+   I    F  +  L  ++++D ++T       T P  L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------TIPQGLPP 192

Query: 443 ---NIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE 499
               + L   KI       L+  N    L +S   IS +      +  + L  L+L+NN+
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNK 251

Query: 500 MK---GKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFS--GSISFLC 554
           +    G L D                             +  + L  N  S  GS  F  
Sbjct: 252 LVKVPGGLADH--------------------------KYIQVVYLHNNNISAIGSNDFCP 285

Query: 555 SISSHL---LTYLDLSNN-LLSGRLPDCWFQ-FDSLAILNLANN 593
              +      + + L +N +    +    F+     A + L N 
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (255), Expect = 1e-23
 Identities = 64/317 (20%), Positives = 114/317 (35%), Gaps = 46/317 (14%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
                ++DL NN +T  I    F    NL   + L +N++    P AF  +  L  L L 
Sbjct: 51  PPDTALLDLQNNKIT-EIKDGDFKNLKNLH-TLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 298 SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEIT 356
            NQL+E+P+ +    +L+ L    NE        I  V        + +  + L  N + 
Sbjct: 109 KNQLKELPEKM--PKTLQELRVHENE--------ITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 357 -GTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
              I +    G   L  + + +  +T TI + +     L  L L GN +   +  A    
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKG 214

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA 473
           L++L  L LS NS++   +        L  + L + K+  + P  L        + + N 
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 474 GISDIVPDWF-----WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGP 528
            IS I  + F              ++L +N ++                 ++  + F   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ---------------YWEIQPSTFRC- 317

Query: 529 IPLLPPNVSSLNLSKNK 545
                   +++ L   K
Sbjct: 318 ----VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 62/311 (19%), Positives = 112/311 (36%), Gaps = 40/311 (12%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLA 591
           LPP+ + L+L  NK +  I      +   L  L L NN +S   P  +     L  L L+
Sbjct: 50  LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 592 NNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL-SGEIPTW 650
            N    E+P+ M   +++  L ++ N ++    S F   +Q+ +++LG N L S  I   
Sbjct: 109 KNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 651 IGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEK 710
             + +  L  + +        IP  L     +  L L  N I+ +          + K  
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAK-- 220

Query: 711 SSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE 770
                        LGL    +  +   +              ++ + L++NKL  KV   
Sbjct: 221 -------------LGLSFNSISAVDNGSLAN--------TPHLRELHLNNNKLV-KVPGG 258

Query: 771 IMDLVGLVALNLSNNNLTG------QITPRIGQLKSLDFLDLSRNHF-FGGIPSSL-SRL 822
           + D   +  + L NNN++              +  S   + L  N   +  I  S    +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 823 RLLSVMDLSYN 833
            + + + L   
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 63/360 (17%), Positives = 110/360 (30%), Gaps = 82/360 (22%)

Query: 467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526
            +  S+ G+  +  D   D       L+L NN++                  ++    F 
Sbjct: 35  VVQCSDLGLEKVPKDLPPDTA----LLDLQNNKIT-----------------EIKDGDFK 73

Query: 527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL------LTYLDLSNNLLSGRLPDCWF 580
                   N+ +L L  NK S        IS         L  L LS N L   LP+   
Sbjct: 74  NL-----KNLHTLILINNKIS-------KISPGAFAPLVKLERLYLSKNQLK-ELPE--K 118

Query: 581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL--PSFFMNGSQLTLMDL 638
              +L  L +  N          + L  +  + L  N L         F    +L+ + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIP 697
               ++  IP       P+L  L L  NK    +    L  L+++  L LS N+IS +  
Sbjct: 179 ADTNIT-TIPQ---GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 698 KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID 757
               N   + +     L + +N    +       P    D               I+++ 
Sbjct: 234 GSLANTPHLRE-----LHLNNNKLVKV-------PGGLAD------------HKYIQVVY 269

Query: 758 LSSNKLGG------KVLEEIMDLVGLVALNLSNNNLT-GQITPRI-GQLKSLDFLDLSRN 809
           L +N +                      ++L +N +   +I P     +     + L   
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 47/225 (20%), Positives = 84/225 (37%), Gaps = 34/225 (15%)

Query: 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691
            L ++     GL  ++P  +    P+  +L L++NK           L ++  L L  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 692 ISGIIPKCFHNFTAMTK-EKSSN-LSIISNYYY----NLGLRG----MLMPLIFFDTWKG 741
           IS I P  F     + +   S N L  +          L +       +   +F      
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG---- 143

Query: 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIM--DLVGLVALNLSNNNLTGQITPRIGQLK 799
                   L  + +++L +N L    +E      +  L  + +++ N+T  I    G   
Sbjct: 144 --------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPP 192

Query: 800 SLDFLDLSRNHFFGGIPS-SLSRLRLLSVMDLSYNNFSGKIPKGT 843
           SL  L L  N     + + SL  L  L+ + LS+N+ S  +  G+
Sbjct: 193 SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  120 bits (303), Expect = 1e-28
 Identities = 103/493 (20%), Positives = 186/493 (37%), Gaps = 53/493 (10%)

Query: 243 VIDLSNNYLTNSIYPWLFNVSSNL---VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
           ++D S N L +        V  +L      +++  N +          ++ LR L +  N
Sbjct: 4   LVDRSKNGLIH--------VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN 55

Query: 300 QLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT 358
           +++ +          L+ L  S+N+L          +S   T N  L+ L L+FN     
Sbjct: 56  RIQYLDISVFKFNQELEYLDLSHNKL--------VKISCHPTVN--LKHLDLSFNAFD-A 104

Query: 359 IPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL- 414
           +P    F     L+ L L    L  +    I  L+  ++LL+ G +           +  
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164

Query: 415 -SSLDTLQLSDNSLT--LKFSHDWTPPFQLFNI----FLGSCKIGPRFPKWLQSQNQTVA 467
             SL  +  ++      L  S       +L NI        C         LQ+  +   
Sbjct: 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224

Query: 468 LDVSNAGISDIVPDWFWDLTN--QLYYLNLSNNEMKGKLPDLSRKFDSYGPGI------D 519
           L ++N   +         L     ++Y ++SN +++G+L    R FD  G  +       
Sbjct: 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD--FRDFDYSGTSLKALSIHQ 282

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPD 577
           V S+ F  P   +    S++N+     SG+        S +    +LD SNNLL+  + +
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 578 CWFQFDSLAILNLANNSF--FGEIPDSMSFLRSIGSLSLYNNSLSGGLPS-FFMNGSQLT 634
                  L  L L  N      +I +  + ++S+  L +  NS+S             L 
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 635 LMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG 694
            +++  N L+  I   +    P + VL L SNK   +IP Q+  L  +Q L+++ N +  
Sbjct: 403 SLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458

Query: 695 IIPKCFHNFTAMT 707
           +    F   T++ 
Sbjct: 459 VPDGIFDRLTSLQ 471

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (301), Expect = 2e-28
 Identities = 95/499 (19%), Positives = 164/499 (32%), Gaps = 74/499 (14%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
            L  L  L +S N      I  F     +L  L LS  +    I         L+ LDL 
Sbjct: 43  SLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLS 98

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIST 229
           FN   +         +S L++L L+   L K S  V  +++L     L +          
Sbjct: 99  FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKED 156

Query: 230 PSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLG---------SNQLHGS 280
           P  L    ++SL ++  +N      +   +  V++  + +I             + L   
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 281 IPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST 340
                    +L +++   N    + + +   +++     S  +L+G+L     + S  S 
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 341 KNSSLEWLYLAFNEITGTIPDL-GGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
           K  +L    +  +        +   F ++ I +   +           ++S    L  S 
Sbjct: 276 K--ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           N L   + E    +L+ L+TL L  N L                      K   +  +  
Sbjct: 334 NLLTDTVFEN-CGHLTELETLILQMNQL----------------------KELSKIAEMT 370

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519
                   LD+S   +S          T  L  LN+S+N     L D    F        
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTI--FRC------ 418

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPD 577
                       LPP +  L+L  NK    I  +      L  L  L++++N L   +PD
Sbjct: 419 ------------LPPRIKVLDLHSNK----IKSIPKQVVKLEALQELNVASNQLK-SVPD 461

Query: 578 CWFQ-FDSLAILNLANNSF 595
             F    SL  + L  N +
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 1e-27
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 61/474 (12%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
           S+   ++++S NY++  ++       S L   + +  N++       F     L +LDL 
Sbjct: 20  SQKTTILNISQNYIS-ELWTSDILSLSKLR-ILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 298 SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITG 357
            N+L ++                                       +L+ L L+FN    
Sbjct: 78  HNKLVKIS---------------------------------CHPTVNLKHLDLSFNAFD- 103

Query: 358 TIPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
            +P    F     L+ L L    L  +    I  L+  ++LL+ G +           + 
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 415 --SSLDTLQLSDNSLT--LKFSHDWTPPFQLFNI-FLGSCKIGPRFPKWLQSQNQTVALD 469
              SL  +  ++      L  S       +L NI  +        F   L        L 
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 470 VSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
                  +   + F  +   +++  +        + ++  +        D S        
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFS----ISNVKLQGQLDFRDFDYSGTSLK--- 276

Query: 530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILN 589
                 +S   +  + F    S++  I S  +   + + +        C  +      L+
Sbjct: 277 -----ALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 590 LANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDLGKNGLSGEI 647
            +NN     + ++   L  + +L L  N L     +         L  +D+ +N +S + 
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 648 PTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
                    +L+ L++ SN     I   L     I++LDL  N I  I  +   
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK 442

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 4e-27
 Identities = 94/541 (17%), Positives = 163/541 (30%), Gaps = 88/541 (16%)

Query: 294 LDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWLYLAF 352
           +D   N L  VPK          L  S N         I  + +      S L  L ++ 
Sbjct: 5   VDRSKNGLIHVPK--DLSQKTTILNISQNY--------ISELWTSDILSLSKLRILIISH 54

Query: 353 NEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEAL 410
           N I   +          L+ L L +N+L      S      L+ L LS N+   +     
Sbjct: 55  NRIQ-YLDISVFKFNQELEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKE 110

Query: 411 FSNLSSLDTLQLSDNSLT-LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS-QNQTVAL 468
           F N+S L  L LS   L                 + LG        P+ LQ    +++ +
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

Query: 469 DVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPG----------I 518
                     + D        L   N+       K                        I
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 519 DVSSNQFDGPIPLL-PPNVSSLNLSKNKFSGSISFLCSISSHL----LTYLDLSNNLLSG 573
           + + N F   + L+    V   ++S  K  G + F     S      L+   + +++   
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 574 RLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQL 633
                +  F ++ I N   +          S +     L   NN L+  +     + ++L
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 634 TLMDLGKNGLSGEIPTWIG--ESLPNLVVLSLRSNKFHGNIPFQLCY-LSHIQILDLSLN 690
             + L  N L  E+         + +L  L +  N    +     C     +  L++S N
Sbjct: 351 ETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
            ++  I +C                                                   
Sbjct: 410 ILTDTIFRCL-------------------------------------------------P 420

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH 810
             IK++DL SNK+   + ++++ L  L  LN+++N L         +L SL  + L  N 
Sbjct: 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 811 F 811
           +
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (289), Expect = 7e-27
 Identities = 99/523 (18%), Positives = 173/523 (33%), Gaps = 76/523 (14%)

Query: 161 SKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLG 220
            K  +L++  N +      D +  LS LR L ++  ++        V    + L  L L 
Sbjct: 21  QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDI--SVFKFNQELEYLDLS 77

Query: 221 YCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGS 280
           +  L  IS           +L+ +DLS N          F   S L   + L +  L  S
Sbjct: 78  HNKLVKISCHPT------VNLKHLDLSFNAFDALPICKEFGNMSQL-KFLGLSTTHLEKS 130

Query: 281 IPLAFGHMASLRHLDLLSNQLREVPKFLG----NMSSLKRLVFSYNELRGELSEFIQNVS 336
             L   H+   + L +L     E     G    N  SL  +  +  E    L   ++ V+
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 337 SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQL---SKLE 393
           +    N          +     +  L   P L  L+L N   T      I QL   + + 
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 394 LLLLSGNSLRGVISEALFS----NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
              +S   L+G +    F     +L +L   Q+  +           P   ++ IF    
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-------FPQSYIYEIF---- 299

Query: 450 KIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSR 509
                      S        VS    + +V        +   +L+ SNN +         
Sbjct: 300 -----------SNMNIKNFTVSG---TRMVHMLCPSKISPFLHLDFSNNLLT-------- 337

Query: 510 KFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLS 567
                    D                + +L L  N+    +S +  +++ +  L  LD+S
Sbjct: 338 ---------DTVFENCGHL-----TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDIS 382

Query: 568 NNLLSGRLPDCWFQF-DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSF 626
            N +S         +  SL  LN+++N     I         I  L L++N +   +P  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIKS-IPKQ 439

Query: 627 FMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFH 669
            +    L  +++  N L   +P  I + L +L  + L +N + 
Sbjct: 440 VVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 60/338 (17%), Positives = 135/338 (39%), Gaps = 27/338 (7%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           S+L + HL    +           E    L   +  +L          H + ++S   V 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFS---------NWVQVLSNLRSLTNL 217
           +L  +N+      +  SY  S+      + KLS  +         +++++L  +   T  
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 218 YLGYCDLPPISTPSLLHINYS----KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLG 273
           Y    ++           +YS    K+L +  + ++        +++ + SN+ +  +  
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNM-NIKNFT 308

Query: 274 SNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFI 332
            +       L    ++   HLD  +N L +   +  G+++ L+ L+   N+L     + +
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-----KEL 363

Query: 333 QNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLS 390
             ++  +T+  SL+ L ++ N ++            SL  L++ +N LT TI + +    
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PP 421

Query: 391 KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           ++++L L  N ++  I + +   L +L  L ++ N L 
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.2 bits (216), Expect = 8e-18
 Identities = 84/504 (16%), Positives = 158/504 (31%), Gaps = 98/504 (19%)

Query: 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
               IL++  N ++   +  I  LSKL +L++S N ++  +  ++F     L+ L LS N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHN 79

Query: 426 SLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWD 485
            L  K S   T   +  ++                S N   AL +            F +
Sbjct: 80  KLV-KISCHPTVNLKHLDL----------------SFNAFDALPICKE---------FGN 113

Query: 486 LTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNK 545
           ++  L +L LS   ++                     +       L    V  +      
Sbjct: 114 MSQ-LKFLGLSTTHLE--------------------KSSVLPIAHLNISKVLLVLGETYG 152

Query: 546 FSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSF 605
                  L   ++  L  +  +N      L        +L + N+       +    +S 
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 606 LRSIG------SLSLYNNSLSGGLPSF---FMNGSQLTLMDLGKNGLSG----EIPTWIG 652
           L  +       +L+L N   +          +  + +    +    L G        + G
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712
            SL  L +  + S+ F     +     S++ I + +++    +   C    +        
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH---- 328

Query: 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM 772
            L   +N   +                          L  ++ + L  N+L  K L +I 
Sbjct: 329 -LDFSNNLLTDT-------VFENCGH-----------LTELETLILQMNQL--KELSKIA 367

Query: 773 D----LVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
           +    +  L  L++S N+++           KSL  L++S N     I   L     + V
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKV 425

Query: 828 MDLSYNNFSGKIPKG----TQLQR 847
           +DL  N     IPK       LQ 
Sbjct: 426 LDLHSNKIK-SIPKQVVKLEALQE 448

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 60/225 (26%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGN 159
            +        K+    +LD S N  + +                              G+
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-------------------------GH 346

Query: 160 LSKLQVLDLRFNNLFS-SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
           L++L+ L L+ N L   S   +  + + SL+ LD++   +S         S  +SL +L 
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSWTKSLLSLN 405

Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
           +    L       L        ++V+DL +N +                           
Sbjct: 406 MSSNILTDTIFRCLPP-----RIKVLDLHSNKIK-------------------------- 434

Query: 279 GSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
            SIP     + +L+ L++ SNQL+ VP      ++SL+++    N
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (281), Expect = 9e-27
 Identities = 57/268 (21%), Positives = 104/268 (38%), Gaps = 10/268 (3%)

Query: 139 LSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKL 198
           +  L LS+ +        L     LQ L L  N + ++   D  S L SL +LDL+   L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 199 SKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPW 258
           S  S+       L SLT L L       +   SL   ++   L+++ + N      I   
Sbjct: 113 SNLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLF--SHLTKLQILRVGNMDTFTKIQRK 168

Query: 259 LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRL 317
            F   + L + +++ ++ L    P +   + ++ HL L   Q   + + F+   SS++ L
Sbjct: 169 DFAGLTFL-EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 318 VFSYNELRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENN 376
                +L     SE     ++   K  +   + +    +   +  L     L  L    N
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

Query: 377 RLTGTISKSI-GQLSKLELLLLSGNSLR 403
           +L  ++   I  +L+ L+ + L  N   
Sbjct: 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 56/314 (17%), Positives = 113/314 (35%), Gaps = 59/314 (18%)

Query: 289 ASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLE 346
            +++ LDL +N++  +    L    +L+ LV + N         I  +   S +   SLE
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--------INTIEEDSFSSLGSLE 103

Query: 347 WLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSI--GQLSKLELLLLSGNSL 402
            L L++N ++  +         SL  L+L  N    T+ ++     L+KL++L +     
Sbjct: 104 HLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
              I    F+ L+ L+ L++  + L                         P+    L+S 
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQ---------------------SYEPK---SLKSI 197

Query: 463 NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSS 522
                L +       ++  +    ++ +  L L + ++                  ++S+
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSS-VECLELRDTDL------------DTFHFSELST 244

Query: 523 NQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ- 581
            + +  I        ++ ++       +  L  IS   L  L+ S N L   +PD  F  
Sbjct: 245 GETNSLIKKF--TFRNVKITDESLFQVMKLLNQISG--LLELEFSRNQLKS-VPDGIFDR 299

Query: 582 FDSLAILNLANNSF 595
             SL  + L  N +
Sbjct: 300 LTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 5e-16
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 78/330 (23%)

Query: 358 TIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL 417
           +IP  G   +++ L L NNR+T   +  + +   L+ L+L+ N +   I E  FS+L SL
Sbjct: 45  SIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 418 DTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISD 477
           + L LS N L+                                                +
Sbjct: 103 EHLDLSYNYLS------------------------------------------------N 114

Query: 478 IVPDWFWDLTNQLYYLNLSNNEMK--------GKLPDLSRKFDSYGPGI-DVSSNQFDGP 528
           +   WF  L++ L +LNL  N  K          L  L             +    F G 
Sbjct: 115 LSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG- 172

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAI 587
                  +  L +  +    S       S   +++L L        L + +     S+  
Sbjct: 173 ----LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226

Query: 588 LNLANNSF----FGEIPDSMSFLRSIGSLSLYNNSLSG----GLPSFFMNGSQLTLMDLG 639
           L L +       F E+  +      I   +  N  ++      +       S L  ++  
Sbjct: 227 LELRDTDLDTFHFSELS-TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFH 669
           +N L   +P  I + L +L  + L +N + 
Sbjct: 286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 8e-16
 Identities = 55/286 (19%), Positives = 109/286 (38%), Gaps = 28/286 (9%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNL 590
           L   V SL+LS N+ +  IS         L  L L++N ++  + +  F    SL  L+L
Sbjct: 50  LTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 591 ANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTLMDLGKNGLSGEIP 648
           + N     +  S    L S+  L+L  N        S F + ++L ++ +G      +I 
Sbjct: 108 SYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 649 TWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
                 L  L  L + ++      P  L  + ++  L L +     ++       +++  
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 709 EKSSNLSIISNYYYNL--GLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766
            +  +  + + ++  L  G    L+    F                 + + ++   L  +
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTF-----------------RNVKITDESL-FQ 268

Query: 767 VLEEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHF 811
           V++ +  + GL+ L  S N L   +   I  +L SL  + L  N +
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 44/267 (16%), Positives = 79/267 (29%), Gaps = 66/267 (24%)

Query: 585 LAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS---GGLPSFFMNGSQLTLMDLGKN 641
             +  + + S       +       G     + SL+    GL         +  +DL  N
Sbjct: 9   WVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTE------AVKSLDLSNN 62

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL-CYLSHIQILDLSLNNISGIIPKCF 700
            ++  I     +   NL  L L SN  +  I       L  ++ LDLS N +S +    F
Sbjct: 63  RIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120

Query: 701 HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
              +++T                                                ++L  
Sbjct: 121 KPLSSLTF-----------------------------------------------LNLLG 133

Query: 761 NKLGGKVLEEIM---DLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIP 816
           N    K L E      L  L  L + N +   +I  +    L  L+ L++  +      P
Sbjct: 134 NPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 817 SSLSRLRLLSVMDLSYNNFSGKIPKGT 843
            SL  ++ +S + L        + +  
Sbjct: 192 KSLKSIQNVSHLILHMKQHI-LLLEIF 217

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  111 bits (279), Expect = 1e-26
 Identities = 67/324 (20%), Positives = 112/324 (34%), Gaps = 59/324 (18%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
             T LDL  N+ S     +F G L  L  L L + + +         L KLQ L +  N+
Sbjct: 55  DTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 173 LFS-SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPS 231
           L     NL      SSL  L + D ++ K      V S LR++  + +G   L       
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 232 LLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL 291
                    L  + +S   LT                            IP       +L
Sbjct: 167 GAFDGLK--LNYLRISEAKLT---------------------------GIPK--DLPETL 195

Query: 292 RHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLY 349
             L L  N+++ +    L   S L RL   +N++R         + +GS     +L  L+
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--------MIENGSLSFLPTLRELH 247

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSI-------GQLSKLELLLLSGNSL 402
           L  N+++     L     LQ++ L  N +T  +  +         + +    + L  N +
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 403 RGV-ISEALFSNLSSLDTLQLSDN 425
               +  A F  ++    +Q  + 
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  106 bits (267), Expect = 5e-25
 Identities = 54/291 (18%), Positives = 105/291 (36%), Gaps = 43/291 (14%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
           S    ++DL NN ++  +    F    +L   + L +N++      AF  +  L+ L + 
Sbjct: 53  SPDTTLLDLQNNDIS-ELRKDDFKGLQHLY-ALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 298 SNQLREVPKFL----------------------GNMSSLKRLVFSYNELRGELSEFIQNV 335
            N L E+P  L                        + ++  +    N L           
Sbjct: 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GF 164

Query: 336 SSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELL 395
             G+     L +L ++  ++T  IP      +L  L L++N++     + + + SKL  L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 396 LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI---- 451
            L  N +R +I     S L +L  L L +N L+ +          L  ++L +  I    
Sbjct: 223 GLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 452 ----GPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
                P      ++    ++L  +     ++ P  F  +T+    +   N 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD-RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 60/341 (17%), Positives = 104/341 (30%), Gaps = 61/341 (17%)

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRG 326
             +      L  ++P           LDL +N + E+ K     +  L  LV   N+   
Sbjct: 36  RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--- 89

Query: 327 ELSEFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKS 385
                I  +   + +    L+ LY++ N +   IP      SL  L + +NR+   + K 
Sbjct: 90  -----ISKIHEKAFSPLRKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIR-KVPKG 141

Query: 386 I-GQLSKLELLLLSGNSLRGV-ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLF- 442
           +   L  +  + + GN L         F  L  L+ L++S+  LT         P  L  
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-------GIPKDLPE 193

Query: 443 ---NIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNE 499
               + L   KI     + L   ++   L + +  I  I       L   L  L+L NN 
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-LRELHLDNN- 251

Query: 500 MKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFS----GSISFLCS 555
              KL  +                            +  + L  N  +         +  
Sbjct: 252 ---KLSRVPAGLPD-------------------LKLLQVVYLHTNNITKVGVNDFCPVGF 289

Query: 556 ISSHL-LTYLDLSNNLLS-GRLPDCWFQ-FDSLAILNLANN 593
                    + L NN +    +    F+       +   N 
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 60/317 (18%), Positives = 110/317 (34%), Gaps = 52/317 (16%)

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
            P   +L L+NN ++         L  L  L+L  N +   I E  FS L  L  L +S 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFW 484
           N L                      +I P  P  L        L + +  I  +    F 
Sbjct: 112 NHLV---------------------EIPPNLPSSLVE------LRIHDNRIRKVPKGVFS 144

Query: 485 DLTNQLYYLNLSNNEMK------GKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSS 538
            L N +  + +  N ++      G    L   +      + +S  +  G    LP  ++ 
Sbjct: 145 GLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNY------LRISEAKLTGIPKDLPETLNE 197

Query: 539 LNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNLANNSFFG 597
           L+L  NK   +I     +    L  L L +N +   + +    F  +L  L+L NN    
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL-S 254

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSG------GLPSFFMNGSQLTLMDLGKNGLS-GEIPTW 650
            +P  +  L+ +  + L+ N+++           F +  +    + L  N +   E+   
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 651 IGESLPNLVVLSLRSNK 667
               + + + +   + K
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 62/353 (17%), Positives = 115/353 (32%), Gaps = 69/353 (19%)

Query: 467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526
            +  S+ G+  +  +   D T     L+L NN++                  ++  + F 
Sbjct: 37  VVQCSDLGLKAVPKEISPDTT----LLDLQNNDIS-----------------ELRKDDFK 75

Query: 527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLA 586
           G       ++ +L L  NK S  I          L  L +S N L   +P       SL 
Sbjct: 76  GL-----QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLV 126

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSL-SGGLPSFFMNGSQLTLMDLGKNGLSG 645
            L + +N          S LR++  + +  N L + G      +G +L  + + +  L+ 
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT- 185

Query: 646 EIPTWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFT 704
            IP    +    L  L L  NK    I  + L   S +  L L  N I  I         
Sbjct: 186 GIPK---DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG 764
            + +     L + +N    +       P    D            L L++++ L +N + 
Sbjct: 242 TLRE-----LHLDNNKLSRV-------PAGLPD------------LKLLQVVYLHTNNIT 277

Query: 765 G------KVLEEIMDLVGLVALNLSNNNLT-GQITPRIGQ-LKSLDFLDLSRN 809
                    +   +       ++L NN +   ++ P   + +     +     
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 13/178 (7%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
              P       L YL +S    +G  IP+       L+EL L   +        L   SK
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTG--IPK--DLPETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY- 221
           L  L L  N +        LS+L +LR L L + KLS+       L +L+ L  +YL   
Sbjct: 219 LYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSRVPAG---LPDLKLLQVVYLHTN 274

Query: 222 --CDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-SIYPWLFNVSSNLVDHIDLGSNQ 276
               +       +           I L NN +    + P  F   ++ +  I  G+ +
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL-AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 57/259 (22%), Positives = 87/259 (33%), Gaps = 35/259 (13%)

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
            +P  +S       L L NN +S      F     L  + L  N +S +I       L  
Sbjct: 47  AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103

Query: 658 LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717
           L  L +  N     IP  L   S +  L +  N I  +    F     M       + + 
Sbjct: 104 LQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNC-----IEMG 155

Query: 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEY------------KSILGLIKIIDLSSNKLGG 765
            N   N G             + G +  Y            K +   +  + L  NK+  
Sbjct: 156 GNPLENSGFEP--------GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 207

Query: 766 KVLEEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRL 824
             LE+++    L  L L +N +   I       L +L  L L  N     +P+ L  L+L
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKL 265

Query: 825 LSVMDLSYNNFSGKIPKGT 843
           L V+ L  NN + K+    
Sbjct: 266 LQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 58/214 (27%)

Query: 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691
            L ++     GL   +P  I    P+  +L L++N            L H+  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILG 751
           IS I  K F                                                 L 
Sbjct: 90  ISKIHEKAFSP-----------------------------------------------LR 102

Query: 752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNH 810
            ++ + +S N L    +   +    LV L + +N +  ++   +   L++++ +++  N 
Sbjct: 103 KLQKLYISKNHL--VEIPPNL-PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158

Query: 811 F-FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
               G          L+ + +S    +  IPK  
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (276), Expect = 2e-26
 Identities = 57/247 (23%), Positives = 90/247 (36%), Gaps = 19/247 (7%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
           SS   L+L   KL    +   V   L  LT L L    L      S      + SL+ +D
Sbjct: 28  SSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLD 84

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMASLRHLDLLSNQLREV 304
           LS N +        F     L  H+D   + L        F  + +L +LD+     R  
Sbjct: 85  LSFNGVI--TMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 305 PK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD- 361
                  +SSL+ L  + N        F +N          +L +L L+  ++   +   
Sbjct: 142 FNGIFNGLSSLEVLKMAGNS-------FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 193

Query: 362 -LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTL 420
                 SLQ+L++ +N      +     L+ L++L  S N +     + L    SSL  L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 421 QLSDNSL 427
            L+ N  
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (271), Expect = 8e-26
 Identities = 52/219 (23%), Positives = 77/219 (35%), Gaps = 10/219 (4%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGS-LGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
              KL  LT L LS N  S              L  L LS       +      L +L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           LD + +NL           L +L YLD++        N   + + L SL  L +      
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQ 163

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
               P +      ++L  +DLS   L   + P  FN  S+L   +++  N         +
Sbjct: 164 ENFLPDIFT--ELRNLTFLDLSQCQLE-QLSPTAFNSLSSL-QVLNMSHNNFFSLDTFPY 219

Query: 286 GHMASLRHLDLLSNQLREVPK--FLGNMSSLKRLVFSYN 322
             + SL+ LD   N +    K       SSL  L  + N
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (268), Expect = 2e-25
 Identities = 56/268 (20%), Positives = 95/268 (35%), Gaps = 43/268 (16%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH--GSIPLAFGHMASLRHLD 295
             S   ++L +N L  S+   +F+  + L   + L SN L   G    +     SL++LD
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLT-KLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 296 LLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST--KNSSLEWLYLAFN 353
           L  N +  +      +  L+ L F ++         ++ +S  S      +L +L ++  
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSN--------LKQMSEFSVFLSLRNLIYLDISHT 136

Query: 354 EITGTIPD--LGGFPSLQILSLENNRLTGTISKSI-GQLSKLELLLLSGNSLRGVISEAL 410
                  +    G  SL++L +  N         I  +L  L  L LS   L   +S   
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDV 470
           F++LSSL  L +S N+                        +        +  N    LD 
Sbjct: 195 FNSLSSLQVLNMSHNNFF---------------------SLDTFP---YKCLNSLQVLDY 230

Query: 471 SNAGISDIVPDWFWDLTNQLYYLNLSNN 498
           S   I            + L +LNL+ N
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 60/273 (21%), Positives = 101/273 (36%), Gaps = 48/273 (17%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
             T L+L  N                    +L    F          L++L  L L  N 
Sbjct: 29  SATRLELESNKLQ-----------------SLPHGVFD--------KLTQLTKLSLSSNG 63

Query: 173 L-FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPS 231
           L F           +SL+YLDL+   +   S+       L  L +L   + +L  +S  S
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 232 LLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI-PLAFGHMAS 290
           +      ++L  +D+S+ +     +  +FN  S+L   + +  N    +  P  F  + +
Sbjct: 121 VFL--SLRNLIYLDISHTHTR-VAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRN 176

Query: 291 LRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWL 348
           L  LDL   QL ++      ++SSL+ L  S+N           ++ +   K  +SL+ L
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--------FFSLDTFPYKCLNSLQVL 228

Query: 349 YLAFNEITGTIPD---LGGFPSLQILSLENNRL 378
             + N I  T           SL  L+L  N  
Sbjct: 229 DYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 66/318 (20%), Positives = 112/318 (35%), Gaps = 77/318 (24%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWL 348
           S   +   S  L  VP  +   SS  RL    N+        +Q++  G     + L  L
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP--SSATRLELESNK--------LQSLPHGVFDKLTQLTKL 57

Query: 349 YLAFNEITGTIPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
            L+ N ++             SL+ L L  N +  T+S +   L +LE L    ++L+ +
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 116

Query: 406 ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
              ++F +L +L  L +S     + F+  +     L  + +                   
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA------------------ 158

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF 525
                 N+   + +PD F +L N L +L+LS  +++                  +S   F
Sbjct: 159 -----GNSFQENFLPDIFTELRN-LTFLDLSQCQLE-----------------QLSPTAF 195

Query: 526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL------LTYLDLSNNLLSGRLPDCW 579
           +        ++  LN+S N          S+ +        L  LD S N +        
Sbjct: 196 NS-----LSSLQVLNMSHNN-------FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQE 242

Query: 580 FQ--FDSLAILNLANNSF 595
            Q    SLA LNL  N F
Sbjct: 243 LQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 8e-17
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 6/176 (3%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
           T++ + L L+ L +LD   +N           SL  L  L +S              LS 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
           L+VL +  N+   +   D  + L +L +LDL+ C+L + S      ++L SL  L + + 
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHN 209

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
           +   + T     +    SL+V+D S N++  S    L +  S+L   ++L  N   
Sbjct: 210 NFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 56/287 (19%), Positives = 94/287 (32%), Gaps = 59/287 (20%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFD---SLAIL 588
           +P + + L L  NK   S+          LT L LS+N LS     C        SL  L
Sbjct: 26  IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYL 83

Query: 589 NLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG-GLPSFFMNGSQLTLMDLGKNGLSGEI 647
           +L+ N     +  +   L  +  L   +++L      S F++   L  +D+         
Sbjct: 84  DLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VA 141

Query: 648 PTWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAM 706
              I   L +L VL +  N F  N        L ++  LDLS   +  + P  F++ +++
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 707 TKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK 766
                                                            +++S N     
Sbjct: 202 QV-----------------------------------------------LNMSHNNFFSL 214

Query: 767 VLEEIMDLVGLVALNLSNNNLTGQITPRI--GQLKSLDFLDLSRNHF 811
                  L  L  L+ S N++      +       SL FL+L++N F
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 52/244 (21%), Positives = 91/244 (37%), Gaps = 32/244 (13%)

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
              L++ +  +  +    F  LT  L  L+LS+N +                     S  
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSF---------------KGCCSQS 73

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPDCWFQ- 581
             G       ++  L+LS N     +  + S    L  L +LD  ++ L        F  
Sbjct: 74  DFGT-----TSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 582 FDSLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPS-FFMNGSQLTLMDLG 639
             +L  L++++        + + + L S+  L +  NS         F     LT +DL 
Sbjct: 125 LRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKC 699
           +  L  ++      SL +L VL++  N F     F    L+ +Q+LD SLN+I     + 
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 700 FHNF 703
             +F
Sbjct: 243 LQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 55/256 (21%), Positives = 89/256 (34%), Gaps = 32/256 (12%)

Query: 592 NNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS-GEIPTW 650
           N+     +P       S   L L +N L       F   +QLT + L  NGLS     + 
Sbjct: 15  NSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 651 IGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKC-FHNFTAMTKE 709
                 +L  L L  N     +      L  ++ LD   +N+  +     F +   +   
Sbjct: 73  SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY- 130

Query: 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLE 769
                         L +      + F   + G        L  ++++ ++ N      L 
Sbjct: 131 --------------LDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLP 168

Query: 770 EI-MDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
           +I  +L  L  L+LS   L  Q++P     L SL  L++S N+FF         L  L V
Sbjct: 169 DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 828 MDLSYNNFSGKIPKGT 843
           +D S N+      K  
Sbjct: 228 LDYSLNHIM-TSKKQE 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (269), Expect = 1e-25
 Identities = 56/298 (18%), Positives = 125/298 (41%), Gaps = 38/298 (12%)

Query: 135 SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA 194
           +L    ++A   +     +     +L  +  L      +     ++ + YL++L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS 254
           D +++  +     L NL  +T L L    L  +S  + L     +S++ +DL++  +T+ 
Sbjct: 72  DNQITDLAP----LKNLTKITELELSGNPLKNVSAIAGL-----QSIKTLDLTSTQITD- 121

Query: 255 IYPWLFNVSSNLVD--HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMS 312
                    + L +   + L  NQ+    PLA   + +L++L + + Q+ ++   L N+S
Sbjct: 122 -----VTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDLT-PLANLS 173

Query: 313 SLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILS 372
            L  L    N++  ++S              +L  ++L  N+I+  +  L    +L I++
Sbjct: 174 KLTTLKADDNKIS-DISPL--------ASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVT 223

Query: 373 LENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLK 430
           L N  +T   ++ +   + L +  +        I+ A  S+  +  +  L+ N  +  
Sbjct: 224 LTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (255), Expect = 1e-23
 Identities = 47/274 (17%), Positives = 104/274 (37%), Gaps = 36/274 (13%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
              L+    +    +N+    +    + L  +  L      ++        +  L +L  
Sbjct: 15  DPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTIEG----VQYLNNLIG 67

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS--NLVDHIDLGS 274
           L L    +  ++    L       +  ++LS N L N     +  ++   ++   +DL S
Sbjct: 68  LELKDNQITDLAPLKNL-----TKITELELSGNPLKN-----VSAIAGLQSIK-TLDLTS 116

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQN 334
            Q+    PLA   +++L+ L L  NQ+  +   L  +++L+ L     ++  +L+     
Sbjct: 117 TQITDVTPLA--GLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVS-DLTPL--- 169

Query: 335 VSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLEL 394
                   S L  L    N+I+  I  L   P+L  + L+NN+++      +   S L +
Sbjct: 170 -----ANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFI 221

Query: 395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           + L+  ++         +NL   + ++    +  
Sbjct: 222 VTLTNQTITN-QPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 21/201 (10%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            ++  LQ +  LDL+    +       +  L  L  L L   Q     P  L  L+ LQ 
Sbjct: 101 SAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           L +    +    +L  L+ LS L  L   D K+S  S     L++L +L  ++L      
Sbjct: 156 LSIGNAQV---SDLTPLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNN--- 205

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
            IS   +  +  + +L ++ L+N  +TN         ++NLV    +         P   
Sbjct: 206 QIS--DVSPLANTSNLFIVTLTNQTITNQP----VFYNNNLVVPNVVKGPSGAPIAPATI 259

Query: 286 GHMASLRHLDLLSNQLREVPK 306
               +    +L  N    +  
Sbjct: 260 SDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 31/261 (11%)

Query: 464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGI 518
             + +    + ++D V     DL   +  L+     +        L +L          +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDG-ITTLSAFGTGVTTIEGVQYLNNLIG--------L 68

Query: 519 DVSSNQFDGPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD 577
           ++  NQ     PL     ++ L LS N    ++S +  + S  +  LDL++  ++  +  
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLK-NVSAIAGLQS--IKTLDLTSTQITD-VTP 124

Query: 578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637
                 +L +L L  N     I   ++ L ++  LS+ N  +S    +   N S+LT + 
Sbjct: 125 LA-GLSNLQVLYLDLNQI-TNIS-PLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP 697
              N +S +I      SLPNL+ + L++N+     P      S++ I+ L+   I+    
Sbjct: 180 ADDNKIS-DISPL--ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPV 234

Query: 698 KCFHNFTAMTKEKSSNLSIIS 718
              +N       K  + + I+
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 36/289 (12%)

Query: 353 NEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFS 412
             I    PD     +   ++   + +T T+  +   L  +  L   G  +  +       
Sbjct: 7   TAINVIFPD-PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG---VQ 60

Query: 413 NLSSLDTLQLSDNSLT-LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVS 471
            L++L  L+L DN +T L    + T   ++  + L    +  +    +        LD++
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLT---KITELELSGNPL--KNVSAIAGLQSIKTLDLT 115

Query: 472 NAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDVSSNQFD 526
           +  I+D+ P     L+N L  L L  N++        L +L          + + + Q  
Sbjct: 116 STQITDVTP--LAGLSN-LQVLYLDLNQITNISPLAGLTNLQY--------LSIGNAQVS 164

Query: 527 GPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSL 585
              PL     +++L    NK S  IS L S+ +  L  + L NN +S   P       +L
Sbjct: 165 DLTPLANLSKLTTLKADDNKIS-DISPLASLPN--LIEVHLKNNQISDVSP--LANTSNL 219

Query: 586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLT 634
            I+ L N +   +     + L       +   S +   P+   +     
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVV--PNVVKGPSGAPIAPATISDNGTYA 266

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 51/308 (16%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593
            N   +   K+  +        +    +T L      ++          ++L  L L +N
Sbjct: 19  ANAIKIAAGKSNVT-DTVTQADLDG--ITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDN 73

Query: 594 SFFGEIPD--SMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI 651
               +I D   +  L  I  L L  N L     S       +  +DL    ++   P   
Sbjct: 74  ----QITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPL-- 125

Query: 652 GESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711
              L NL VL L  N+   NI   L  L+++Q L +    +S + P    N + +T    
Sbjct: 126 -AGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT--- 177

Query: 712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771
             L    N   ++                       + L  +  + L +N++    +  +
Sbjct: 178 --LKADDNKISDI--------------------SPLASLPNLIEVHLKNNQI--SDVSPL 213

Query: 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGI-PSSLSRLRLLSVMDL 830
            +   L  + L+N  +T      +    +L   ++ +      I P+++S     +  +L
Sbjct: 214 ANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

Query: 831 SYNNFSGK 838
           ++N  S  
Sbjct: 271 TWNLTSFI 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (275), Expect = 2e-25
 Identities = 66/265 (24%), Positives = 110/265 (41%), Gaps = 29/265 (10%)

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
            +   L L   ++  I   +  H+     LEV+ L  N +   I    FN  ++L   ++
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHL---HHLEVLQLGRNSIR-QIEVGAFNGLASLN-TLE 129

Query: 272 LGSNQLHGSIPL-AFGHMASLRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELS 329
           L  N L   IP  AF +++ LR L L +N +  +P +    + SL RL         +L 
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL---------DLG 179

Query: 330 EF--IQNVSSGSTKN-SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSI 386
           E   ++ +S G+ +   +L++L L    I   +P+L     L+ L +  N        S 
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446
             LS L+ L +  + +  +I    F  L+SL  L L+ N+L+      +TP   L  + L
Sbjct: 239 HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 447 GS------CKIGPRFPKWLQSQNQT 465
                   C I      WL+    T
Sbjct: 298 HHNPWNCDCDILW-LAWWLREYIPT 321

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (261), Expect = 1e-23
 Identities = 58/295 (19%), Positives = 104/295 (35%), Gaps = 71/295 (24%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
           +  YL+L  NN                    + +  F         +L  L+VL L  N+
Sbjct: 76  NTRYLNLMENNIQ-----------------MIQADTFR--------HLHHLEVLQLGRNS 110

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
           +     +   + L+SL  L+L D  L+   +       L  L  L+L    +  I + + 
Sbjct: 111 I-RQIEVGAFNGLASLNTLELFDNWLTVIPS--GAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLR 292
             +    SL  +DL                             +L      AF  + +L+
Sbjct: 168 NRV---PSLMRLDLGEL-------------------------KKLEYISEGAFEGLFNLK 199

Query: 293 HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLA 351
           +L+L    ++++P     +  L+ L  S N            +  GS    SSL+ L++ 
Sbjct: 200 YLNLGMCNIKDMPNLT-PLVGLEELEMSGNH--------FPEIRPGSFHGLSSLKKLWVM 250

Query: 352 FNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSI-GQLSKLELLLLSGNSLR 403
            ++++  I      G  SL  L+L +N L+ ++   +   L  L  L L  N   
Sbjct: 251 NSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 14/223 (6%)

Query: 103 TINPSLLK-LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS 161
            I     + L HL  L L  N+     +  F G L  L+ L L               LS
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADC-KLSKFSNWVQVLSNLRSLTNLYLG 220
           KL+ L LR N +  S      + + SL  LDL +  KL   S        L +L  L LG
Sbjct: 148 KLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLG 204

Query: 221 YCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGS 280
            C++  +   + L       LE +++S N+    I P  F+  S+L   + + ++Q+   
Sbjct: 205 MCNIKDMPNLTPL-----VGLEELEMSGNHFP-EIRPGSFHGLSSL-KKLWVMNSQVSLI 257

Query: 281 IPLAFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
              AF  +ASL  L+L  N L  +P      +  L  L   +N
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 9e-18
 Identities = 69/328 (21%), Positives = 114/328 (34%), Gaps = 77/328 (23%)

Query: 342 NSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           ++    +      ++  +P  G   + + L+L  N +    + +   L  LE+L L  NS
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 402 LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS 461
           +R  I    F+ L+SL+TL+L DN LT                      I        + 
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT---------------------VIPSG---AFEY 145

Query: 462 QNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVS 521
            ++   L + N  I  I    F  + + L  L+L           L            +S
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGEL------KKLEY----------IS 188

Query: 522 SNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ 581
              F+G   L   N+  LNL        +  L  +    L  L++S N            
Sbjct: 189 EGAFEG---L--FNLKYLNLGMCNIK-DMPNLTPLVG--LEELEMSGNHFP--------- 231

Query: 582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
                   +   SF G        L S+  L + N+ +S    + F   + L  ++L  N
Sbjct: 232 -------EIRPGSFHG--------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFH 669
            LS  +P  +   L  LV L L  N ++
Sbjct: 277 NLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 76/338 (22%), Positives = 110/338 (32%), Gaps = 98/338 (28%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWL 348
               +      L EVP+ +   S+ + L    N         IQ + + + ++   LE L
Sbjct: 55  QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMEN--------NIQMIQADTFRHLHHLEVL 104

Query: 349 YLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI 406
            L  N I   I      G  SL  L L +N LT   S +   LSKL  L L  N +   I
Sbjct: 105 QLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI 162

Query: 407 SEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTV 466
               F+ + SL  L L +                                       +  
Sbjct: 163 PSYAFNRVPSLMRLDLGEL-------------------------------------KK-- 183

Query: 467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526
                   +  I    F  L N L YLNL    +K  +P+L+                  
Sbjct: 184 --------LEYISEGAFEGLFN-LKYLNLGMCNIK-DMPNLTP----------------- 216

Query: 527 GPIPLLPPNVSSLNLSKNKFS----GSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ- 581
                    +  L +S N F     GS   L S     L  L + N+ +S  +    F  
Sbjct: 217 ------LVGLEELEMSGNHFPEIRPGSFHGLSS-----LKKLWVMNSQVS-LIERNAFDG 264

Query: 582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSL 619
             SL  LNLA+N+      D  + LR +  L L++N  
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 10/192 (5%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
           L  L  L+L  N  +  P   F   L KL EL L +        +    +  L  LDL  
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 171 NNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
                  +      L +L+YL+L  C +      +  L+ L  L  L +     P I   
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MPNLTPLVGLEELEMSGNHFPEIRPG 236

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
           S   +    SL+ + + N+ ++  I    F+  ++LV  ++L  N L       F  +  
Sbjct: 237 SFHGL---SSLKKLWVMNSQVS-LIERNAFDGLASLV-ELNLAHNNLSSLPHDLFTPLRY 291

Query: 291 LRHLDLLSNQLR 302
           L  L L  N   
Sbjct: 292 LVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 9e-15
 Identities = 62/282 (21%), Positives = 97/282 (34%), Gaps = 58/282 (20%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLA 591
           +P N   LNL +N     I        H L  L L  N +       +    SL  L L 
Sbjct: 73  IPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 592 NNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTW 650
           +N     IP     +L  +  L L NN +       F     L  +DLG+      I   
Sbjct: 132 DNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 651 IGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEK 710
             E L NL  L+L       ++P  L  L  ++ L++S N+   I P  FH  +++ K  
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK-- 246

Query: 711 SSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE 770
                                                        + + ++++   ++E 
Sbjct: 247 ---------------------------------------------LWVMNSQV--SLIER 259

Query: 771 --IMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRN 809
                L  LV LNL++NNL+  +   +   L+ L  L L  N
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 1e-11
 Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 38/251 (15%)

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
           E+P  +    +   L+L  N++       F +   L ++ LG+N +  +I       L +
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 658 LVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK---EKSSN 713
           L  L L  N     IP     YLS ++ L L  N I  I    F+   ++ +    +   
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD 773
           L  IS                    ++G        L  +K ++L    +  K +  +  
Sbjct: 184 LEYISE-----------------GAFEG--------LFNLKYLNLGMCNI--KDMPNLTP 216

Query: 774 LVGLVALNLSNNNLTGQITPR-IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY 832
           LVGL  L +S N+   +I P     L SL  L +  +       ++   L  L  ++L++
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 833 NNFSGKIPKGT 843
           NN S  +P   
Sbjct: 276 NNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 33/215 (15%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
           +Q + +   + GLS E+P  I     N   L+L  N           +L H+++L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
           +I  I    F+   ++       L +  N    L    ++    F              L
Sbjct: 110 SIRQIEVGAFNGLASLNT-----LELFDN---WL---TVIPSGAFEY------------L 146

Query: 751 GLIKIIDLSSNKLGGKVLEEI-MDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSR 808
             ++ + L +N +   +       +  L+ L+L        I+      L +L +L+L  
Sbjct: 147 SKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 809 NHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
            +    +P +L+ L  L  +++S N+F  +I  G+
Sbjct: 206 CNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGS 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 4e-25
 Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 29/261 (11%)

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
            +   L L    +  I   S  H+   + LE++ LS N++  +I    FN  +NL   ++
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIR-TIEIGAFNGLANLN-TLE 118

Query: 272 LGSNQLHGSIPL-AFGHMASLRHLDLLSNQLREVPKFL-GNMSSLKRLVFSYNELRGELS 329
           L  N+L  +IP  AF +++ L+ L L +N +  +P +    + SL+RL         +L 
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL---------DLG 168

Query: 330 EF--IQNVSSGSTKN-SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSI 386
           E   +  +S G+ +  S+L +L LA   +   IP+L     L  L L  N L+     S 
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL 446
             L  L+ L +  + ++ VI    F NL SL  + L+ N+LTL     +TP   L  I L
Sbjct: 228 QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 447 GS------CKIGPRFPKWLQS 461
                   C I      W++ 
Sbjct: 287 HHNPWNCNCDILW-LSWWIKD 306

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (266), Expect = 2e-24
 Identities = 57/268 (21%), Positives = 96/268 (35%), Gaps = 44/268 (16%)

Query: 139 LSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKL 198
              L L   Q      +   +L  L++L L  N++  +  +   + L++L  L+L D +L
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL 124

Query: 199 SKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPW 258
           +   N       L  L  L+L    +  I + +   I    SL  +DL            
Sbjct: 125 TTIPN--GAFVYLSKLKELWLRNNPIESIPSYAFNRI---PSLRRLDLGEL--------- 170

Query: 259 LFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLV 318
                            +L      AF  +++LR+L+L    LRE+P     +  L  L 
Sbjct: 171 ----------------KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLIKLDELD 213

Query: 319 FSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD--LGGFPSLQILSLEN 375
            S N         +  +  GS +    L+ L++  ++I   I         SL  ++L +
Sbjct: 214 LSGNH--------LSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264

Query: 376 NRLTGTISKSIGQLSKLELLLLSGNSLR 403
           N LT         L  LE + L  N   
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.4 bits (240), Expect = 5e-21
 Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 13/218 (5%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           S   L+HL  L LS N+     I  F G L  L+ L L   +           LSKL+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADC-KLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
            LR N +  S      + + SLR LDL +  +LS  S        L +L  L L  C+L 
Sbjct: 142 WLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLR 198

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
            I   + L       L+ +DLS N+L+ +I P  F    +L   + +  +Q+      AF
Sbjct: 199 EIPNLTPLI-----KLDELDLSGNHLS-AIRPGSFQGLMHL-QKLWMIQSQIQVIERNAF 251

Query: 286 GHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYN 322
            ++ SL  ++L  N L  +P      +  L+R+   +N
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 9e-18
 Identities = 71/328 (21%), Positives = 115/328 (35%), Gaps = 77/328 (23%)

Query: 342 NSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           ++    +      +   +PD G   + ++L+L  N++      S   L  LE+L LS N 
Sbjct: 42  SNQFSKVICVRKNLR-EVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 402 LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS 461
           +R  I    F+ L++L+TL+L DN LT                      I          
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRLT---------------------TIPNG---AFVY 134

Query: 462 QNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVS 521
            ++   L + N  I  I    F  + + L  L+L           LS           +S
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGEL------KRLSY----------IS 177

Query: 522 SNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ 581
              F+G   L   N+  LNL+       I  L  +    L  LDLS N LS         
Sbjct: 178 EGAFEG---L--SNLRYLNLAMCNLR-EIPNLTPLIK--LDELDLSGNHLS--------- 220

Query: 582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
                   +   SF G        L  +  L +  + +     + F N   L  ++L  N
Sbjct: 221 -------AIRPGSFQG--------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFH 669
            L+  +P  +   L +L  + L  N ++
Sbjct: 266 NLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 10/192 (5%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
           L +L  L+L  N  +  P       L KL EL L +        +    +  L+ LDL  
Sbjct: 111 LANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 171 NNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
               S  +      LS+LRYL+LA C L +    +  L+ L  L  L L    L  I   
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE----IPNLTPLIKLDELDLSGNHLSAIRPG 225

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
           S   +     L+ + +  + +   I    F+   +LV  I+L  N L       F  +  
Sbjct: 226 SFQGL---MHLQKLWMIQSQIQ-VIERNAFDNLQSLV-EINLAHNNLTLLPHDLFTPLHH 280

Query: 291 LRHLDLLSNQLR 302
           L  + L  N   
Sbjct: 281 LERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 51/247 (20%), Positives = 92/247 (37%), Gaps = 30/247 (12%)

Query: 464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSN 523
            T  L++    I  I  + F  L + L  L LS N ++                  +   
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIR-----------------TIEIG 106

Query: 524 QFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF- 582
            F+G    L  N+++L L  N+ + +I     +    L  L L NN +   +P   F   
Sbjct: 107 AFNG----LA-NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 583 DSLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
            SL  L+L        I +     L ++  L+L   +L   +P+      +L  +DL  N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNL-TPLIKLDELDLSGN 217

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
            LS  I     + L +L  L +  ++           L  +  ++L+ NN++ +    F 
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 702 NFTAMTK 708
               + +
Sbjct: 277 PLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 63/282 (22%), Positives = 96/282 (34%), Gaps = 58/282 (20%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLA 591
           +  N   LNL +N+    I          L  L LS N +       +    +L  L L 
Sbjct: 62  ISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 592 NNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTW 650
           +N     IP+    +L  +  L L NN +       F     L  +DLG+      I   
Sbjct: 121 DNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 651 IGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEK 710
             E L NL  L+L        IP  L  L  +  LDLS N++S I P  F     + K  
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK-- 235

Query: 711 SSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE 770
                                                        + +  +++  +V+E 
Sbjct: 236 ---------------------------------------------LWMIQSQI--QVIER 248

Query: 771 --IMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRN 809
               +L  LV +NL++NNLT  +   +   L  L+ + L  N
Sbjct: 249 NAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 56/265 (21%)

Query: 582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
             +  +LNL  N       +S   LR +  L L  N +       F   + L  ++L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLS-LNNISGIIPKC 699
            L+  IP      L  L  L LR+N    +IP +    +  ++ LDL  L  +S I    
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 700 FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLS 759
           F                                                 L  ++ ++L+
Sbjct: 181 FEG-----------------------------------------------LSNLRYLNLA 193

Query: 760 SNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGGIPSS 818
              L  + +  +  L+ L  L+LS N+L+  I P     L  L  L + ++       ++
Sbjct: 194 MCNL--REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 819 LSRLRLLSVMDLSYNNFSGKIPKGT 843
              L+ L  ++L++NN +  +P   
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 54/247 (21%), Positives = 81/247 (32%), Gaps = 54/247 (21%)

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
           E+PD +S   +   L+L+ N +     + F +   L ++ L +N +   I       L N
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 658 LVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI 716
           L  L L  N+    IP     YLS ++ L L  N I  I    F+           +L  
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP--------SLRR 164

Query: 717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVG 776
           +                                    ++  +S     G        L  
Sbjct: 165 LDLGELK------------------------------RLSYISEGAFEG--------LSN 186

Query: 777 LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
           L  LNL+  NL     P +  L  LD LDLS NH     P S   L  L  + +  +   
Sbjct: 187 LRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 837 GKIPKGT 843
             I +  
Sbjct: 245 -VIERNA 250

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           +   L +L YL+L+  N     IP     L KL EL LS    +   P     L  LQ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLRE--IPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLG----YC 222
            +  + +      +    L SL  ++LA   L+   +   + + L  L  ++L      C
Sbjct: 237 WMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLLPH--DLFTPLHHLERIHLHHNPWNC 293

Query: 223 D 223
           +
Sbjct: 294 N 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
           P+L  L  L  LDLS N+ S      F G L  L +L +  +Q      +   NL  L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLA------DCKLSKFSNWVQVLSNLRSLTNLYL 219
           ++L  NNL +    D  + L  L  + L       +C +   S W   + ++        
Sbjct: 260 INLAHNNL-TLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWW---IKDMAPSNTACC 315

Query: 220 GYCDLPP 226
             C+ PP
Sbjct: 316 ARCNTPP 322

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 39/225 (17%)

Query: 624 PSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQ 683
           PS     +Q + +   +  L  E+P  I     N  +L+L  N+          +L H++
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 684 ILDLSLNNISGIIPKCFHNFTAMTK-EKSSN-LSIISNYYYNLGLRGMLMPLIFFDTWKG 741
           IL LS N+I  I    F+    +   E   N L+ I                 F      
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-------------NGAFVY---- 134

Query: 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEE--IMDLVGLVALNLSNNNLTGQITPRI-GQL 798
                   L  +K + L +N +  + +       +  L  L+L        I+      L
Sbjct: 135 --------LSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
            +L +L+L+  +    IP +L+ L  L  +DLS N+ S  I  G+
Sbjct: 185 SNLRYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLS-AIRPGS 226

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (270), Expect = 1e-24
 Identities = 81/416 (19%), Positives = 128/416 (30%), Gaps = 79/416 (18%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
              L+ L  LD   +++    ++  +  L+ L  L      ++        LS   +LT 
Sbjct: 38  EEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTY 89

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQ 276
           L      L      + L +     L  ++   N LT        + +  L  +++   N 
Sbjct: 90  LACDSNKL------TNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLT-YLNCARNT 138

Query: 277 LHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVS 336
           L     +   H   L  LD   N+           + L  L  S+N++            
Sbjct: 139 LT---EIDVSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNKIT----------E 184

Query: 337 SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLL 396
              ++N  L  L    N IT    DL     L  L   +N+LT      +  L++L    
Sbjct: 185 LDVSQNKLLNRLNCDTNNITK--LDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFD 239

Query: 397 LSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFP 456
            S N L  +      S LS L TL      L      D T   QL       C+      
Sbjct: 240 CSVNPLTELD----VSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 457 KWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGP 516
             +    Q   LD   AGI+++           L YL L+N E+                
Sbjct: 293 --VTHNTQLYLLDCQAAGITELD---LSQNPK-LVYLYLNNTELT--------------- 331

Query: 517 GIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
            +DVS N            + SL+          S +  I +  L     +     
Sbjct: 332 ELDVSHN----------TKLKSLSCVNAHIQ-DFSSVGKIPA--LNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (269), Expect = 1e-24
 Identities = 59/323 (18%), Positives = 111/323 (34%), Gaps = 50/323 (15%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
            +  L  LTYL+   N  +   +         L+ L  +           + + ++L  L
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLDV----SQNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
           D   N   +  +   ++  + L  LD +  K+++       +S  + L  L     ++  
Sbjct: 154 DCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNI-- 203

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN-LVDHIDLGSNQLHGSIPLAF 285
               + L +N +  L  +D S+N LT        +V+    + + D   N L     L  
Sbjct: 204 ----TKLDLNQNIQLTFLDCSSNKLTE------IDVTPLTQLTYFDCSVNPL---TELDV 250

Query: 286 GHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL 345
             ++ L  L  +   L E+   L + + L            EL           T N+ L
Sbjct: 251 STLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELDV---------THNTQL 299

Query: 346 EWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
             L      IT  + DL   P L  L L N  LT  +   +   +KL+ L      ++  
Sbjct: 300 YLLDCQAAGIT-EL-DLSQNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQDF 354

Query: 406 ISEALFSNLSSLDTLQLSDNSLT 428
              +    + +L+    ++    
Sbjct: 355 ---SSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (265), Expect = 4e-24
 Identities = 71/324 (21%), Positives = 114/324 (35%), Gaps = 51/324 (15%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
             + KL  LT L  + NN +       +     L+ LA  S +    +   +  L+KL  
Sbjct: 58  TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY 110

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           L+   N L     LD +S    L YL+ A   L++       +S+   LT L        
Sbjct: 111 LNCDTNKL---TKLD-VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKK- 160

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN-LVDHIDLGSNQLHGSIPLA 284
                + L +     L  +D S N +T        +VS N L++ ++  +N +     L 
Sbjct: 161 ----ITKLDVTPQTQLTTLDCSFNKITE------LDVSQNKLLNRLNCDTNNITK---LD 207

Query: 285 FGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS 344
                 L  LD  SN+L E+   +  ++ L     S N L               +  S 
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT----------ELDVSTLSK 255

Query: 345 LEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRG 404
           L  L+    ++     DL     L     E  R    +   +   ++L LL         
Sbjct: 256 LTTLHCIQTDLLEI--DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAG--- 308

Query: 405 VISEALFSNLSSLDTLQLSDNSLT 428
            I+E   S    L  L L++  LT
Sbjct: 309 -ITELDLSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (264), Expect = 6e-24
 Identities = 81/448 (18%), Positives = 146/448 (32%), Gaps = 71/448 (15%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           S  +L  LT LD   ++ +       I  L  L++L  +S      +   L   + L  L
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYL 90

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
               N L    NLD ++ L+ L YL+    KL+K       +S    LT L      L  
Sbjct: 91  ACDSNKL---TNLD-VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTL-- 139

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG 286
               + + ++++  L  +D   N     +        + L   +D   N++     L   
Sbjct: 140 ----TEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLT-TLDCSFNKITE---LDVS 188

Query: 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346
               L  L+  +N + ++   L     L  L  S N+L               T  + L 
Sbjct: 189 QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT----------EIDVTPLTQLT 236

Query: 347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI 406
           +   + N +T  +  +     L  L      L       +   ++L      G      I
Sbjct: 237 YFDCSVNPLT-ELD-VSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRK---I 288

Query: 407 SEALFSNLSSLDTLQLSDNSLT-LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
            E   ++ + L  L      +T L  S       +L  ++L + ++       L   + T
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITELDLSQ----NPKLVYLYLNNTEL-----TELDVSHNT 339

Query: 466 --VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM----KGKLPDLSRKFDSYGPGID 519
              +L   NA I D        +   L     +  +     K  L + S         +D
Sbjct: 340 KLKSLSCVNAHIQDF--SSVGKIPA-LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFS 547
              N    P+ + P +    + + N  +
Sbjct: 397 QFGN----PMNIEPGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 55/348 (15%), Positives = 99/348 (28%), Gaps = 70/348 (20%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
                +     LT LD S+N  +   +                                 
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELDV----------------------------SQNKL 192

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
           L  L+   NN+     LD L+    L +LD +  KL++       ++ L  LT       
Sbjct: 193 LNRLNCDTNNITK---LD-LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVN 243

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
            L  +   +L        L  +      L         +++ N    I   +        
Sbjct: 244 PLTELDVSTL------SKLTTLHCIQTDLLE------IDLTHNT-QLIYFQAEGCRKIKE 290

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
           L   H   L  LD  +  + E+   L     L  L  +  EL  EL           + N
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELT-ELD---------VSHN 338

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKL------ELLL 396
           + L+ L      I      +G  P+L        +   T+ K     + L      +LL 
Sbjct: 339 TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLD 396

Query: 397 LSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNI 444
             GN +     +    + ++      + ++     ++ +T        
Sbjct: 397 QFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVG 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 63/385 (16%), Positives = 118/385 (30%), Gaps = 54/385 (14%)

Query: 340 TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
            + ++L  L    + IT  +  +     L  L   +N +T   +  + Q + L  L    
Sbjct: 39  EQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDS 94

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           N L  +      + L+ L  L    N LT     D +    L  +      +       +
Sbjct: 95  NKLTNLD----VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTL-TEID--V 144

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK----GKLPDLSRKFDSYG 515
               Q   LD         +       T  L  L+ S N++      +   L+R      
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQ-LTTLDCSFNKITELDVSQNKLLNR------ 195

Query: 516 PGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSG 573
             ++  +N            ++ L+ S NK +  I       + L  LTY D S N L+ 
Sbjct: 196 --LNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EIDV-----TPLTQLTYFDCSVNPLT- 246

Query: 574 RLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQL 633
            L         L  L+             +    +   +                + +QL
Sbjct: 247 ELDVS--TLSKLTTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299

Query: 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS 693
            L+D    G++ E+        P LV L L + +    +   + + + ++ L     +I 
Sbjct: 300 YLLDCQAAGIT-ELDL---SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 694 GIIPKCFHNFTAMTKEKSSNLSIIS 718
                      A+     +    I+
Sbjct: 353 DFSS--VGKIPALNNNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 77/530 (14%), Positives = 146/530 (27%), Gaps = 122/530 (23%)

Query: 353 NEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFS 412
                  PD     +          +  T + S  QL+ L  L    +S+  +       
Sbjct: 9   QSFNDWFPD----DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG---IE 61

Query: 413 NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSN 472
            L+ L  L  + N++T                                       LD+S 
Sbjct: 62  KLTGLTKLICTSNNIT--------------------------------------TLDLSQ 83

Query: 473 AGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLL 532
                         TN L YL   +N++                 +DV+           
Sbjct: 84  -------------NTN-LTYLACDSNKLT---------------NLDVTPL--------- 105

Query: 533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLAN 592
              ++ LN   NK +            LLTYL+ + N L+  +         L  L+   
Sbjct: 106 -TKLTYLNCDTNKLTKLDVSQNP----LLTYLNCARNTLT-EIDVS--HNTQLTELDCHL 157

Query: 593 NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG 652
           N    ++  +      + +L    N ++  L         L  ++   N ++ ++     
Sbjct: 158 NKKITKLDVTP--QTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDL--- 208

Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712
                L  L   SNK    I      L+ +   D S+N ++ +        T        
Sbjct: 209 NQNIQLTFLDCSSNKLT-EIDVTP--LTQLTYFDCSVNPLTELDVSTLSKLT-------- 257

Query: 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGL--IKIIDLSSNKLGGKVLEE 770
            L  I      + L      LI+F      + +   +     + ++D  +  +      +
Sbjct: 258 TLHCIQTDLLEIDLTHNTQ-LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE---LD 313

Query: 771 IMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDL 830
           +     LV L L+N  LT      +     L  L     H       S+ ++  L+    
Sbjct: 314 LSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNFE 368

Query: 831 SYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRD 880
           +         +         +      +  G P+  +  D       +  
Sbjct: 369 AEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  106 bits (267), Expect = 5e-24
 Identities = 89/542 (16%), Positives = 171/542 (31%), Gaps = 84/542 (15%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWL 348
               +D  +  L  VPK        K L  S N         I  +     +  S L  L
Sbjct: 32  LESMVDYSNRNLTHVPK--DLPPRTKALSLSQNS--------ISELRMPDISFLSELRVL 81

Query: 349 YLAFNEITGTIPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
            L+ N I  ++     F     L+ L + +NRL    + S   ++ L  L LS N    +
Sbjct: 82  RLSHNRIR-SLDF-HVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVL 136

Query: 406 ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
                F NL+ L  L LS                                          
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFR-------QLDLLPVA----------------HLHLSC 173

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSN-- 523
           + LD+ +  I     +        + +L    N +     ++S     +    ++  N  
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 524 ---QFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS----HLLTYLDLSNNLLSGRLP 576
              +    +  L    + LN++      +      +        + YL++ N  ++ R+ 
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 577 DCWFQF-----DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS 631
              F +      SL I ++ N  F        S    +    L  +           + S
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFH--GNIPFQLCYLSHIQILDLSL 689
             T ++  +N  + +       +L  L  L L+ N       +      +S ++ LD+SL
Sbjct: 354 SFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412

Query: 690 NNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSI 749
           N+++         +                    L L   ++    F            +
Sbjct: 413 NSLNSHAYDRTCAWAESILV--------------LNLSSNMLTGSVFR----------CL 448

Query: 750 LGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN 809
              +K++DL +N++   + +++  L  L  LN+++N L         +L SL ++ L  N
Sbjct: 449 PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

Query: 810 HF 811
            +
Sbjct: 508 PW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (261), Expect = 3e-23
 Identities = 85/466 (18%), Positives = 163/466 (34%), Gaps = 52/466 (11%)

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP----KFLGNMSSLKRLVFSYNELRG 326
            L  N +          ++ LR L L  N++R +      F  +   L+ L  S+N L  
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD---LEYLDVSHNRL-- 112

Query: 327 ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGF---PSLQILSLENNRLTGTIS 383
                 QN+S     +  L  L L+FN+    +P    F     L  L L   +      
Sbjct: 113 ------QNISCCPMAS--LRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR---Q 160

Query: 384 KSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDT--LQLSDNSLTLKFSH-----DWT 436
             +  ++ L L  +  + +   I      +L   +T  L L  +  +L         +  
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 437 PPFQLFNIFLG--SCKIGPRFPKWLQSQNQTVALDVSNAGISD--IVPDWFWDLTNQLYY 492
              QL NI L   +C+    F   L      + + + +   +    V  + +     + Y
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 493 LNLSNNEMKGKLPDLSRKFDSYGPGI----DVSSNQFDGPIPLL---PPNVSSLNLSKNK 545
           LN+ N  +  ++      +            V +  F      L      ++   LS + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 546 FSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSF 605
            +  I  +C  S    T+L+ + N+ +  +         L  L L  N            
Sbjct: 341 -TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALM 398

Query: 606 LRSIGSLSLYNNSL----SGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVL 661
            +++ SL   + SL    S            + +++L  N L+G +   +    P + VL
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKVL 455

Query: 662 SLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMT 707
            L +N+   +IP  + +L  +Q L+++ N +  +    F   T++ 
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 1e-22
 Identities = 92/494 (18%), Positives = 166/494 (33%), Gaps = 75/494 (15%)

Query: 161 SKLQVLDLRFNNLFS--SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
            + + L L  N++      ++ +LS    LR L L+  ++        V    + L  L 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLS---ELRVLRLSHNRIRSLD--FHVFLFNQDLEYLD 106

Query: 219 LGY---CDLPPISTPSLLHINYS----------------KSLEVIDLSNNYLTNSIYPWL 259
           + +    ++      SL H++ S                  L  + LS       +    
Sbjct: 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLP 165

Query: 260 FNVSSNLVDHIDLGSNQLHGSIPLAFGHMA-SLRHLDLLSNQLREVPKFLGNMSSLKRLV 318
                     +DL S  + G    +      ++ HL    N L  V   +  +++L  L 
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQ 224

Query: 319 FSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT----IPDLGGFPSLQILSLE 374
            S  +L  E  + +    S  T+  +L  + L   E T      +        ++ L++ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 375 NNRLTGTISKSIGQLSKLELLLLSGNSLRG----VISEALFSNLSSLDTLQLSDNSLTLK 430
           N  +T  I +     S+  L  L    ++        EAL+S  + ++   LS +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 431 FSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQL 490
                                         S +    L+ +    +D V      L   L
Sbjct: 345 HM----VCP--------------------PSPSSFTFLNFTQNVFTDSVFQGCSTLKR-L 379

Query: 491 YYLNLSNNEMKGKLPDLSRKFDS--YGPGIDVSSNQF-DGPIPLL---PPNVSSLNLSKN 544
             L L  N +K     ++    +      +DVS N               ++  LNLS N
Sbjct: 380 QTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 545 KFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSM- 603
             +GS+ F C      +  LDL NN +   +P       +L  LN+A+N     +PD + 
Sbjct: 439 MLTGSV-FRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ-LKSVPDGVF 493

Query: 604 SFLRSIGSLSLYNN 617
             L S+  + L++N
Sbjct: 494 DRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (250), Expect = 6e-22
 Identities = 88/499 (17%), Positives = 158/499 (31%), Gaps = 76/499 (15%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
            L  L  L LS N         F+     L  L +S  +    I      ++ L+ LDL 
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLS 129

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFS----NWVQVLSNLRSLTNLYLGYCDLP 225
           FN+            L+ L +L L+  K  +        + +   L  L + ++   +  
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 226 PISTP--SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL 283
            +  P  ++LH+ +  +       N  +    +  L N+  N  +   L +     +   
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 284 AFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNS 343
              ++ +L+H++       ++ +F      ++ L      +   +    +  +   T   
Sbjct: 250 TLLNV-TLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDR--EEFTYSETALK 305

Query: 344 SLEWLYLAFNEITGTIPDLG-GFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
           SL   ++       +   L   F  + I  L  +             S    L  + N  
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
              + +   S L  L TL L  N L              F + L             ++ 
Sbjct: 366 TDSVFQG-CSTLKRLQTLILQRNGLK-----------NFFKVAL-----------MTKNM 402

Query: 463 NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSS 522
           +    LDVS   ++    D        +  LNLS+N     L      F           
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN----MLTGSV--FRC--------- 447

Query: 523 NQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS-----HLLTYLDLSNNLLSGRLPD 577
                    LPP V  L+L  N+         SI         L  L++++N L   +PD
Sbjct: 448 ---------LPPKVKVLDLHNNRIM-------SIPKDVTHLQALQELNVASNQLK-SVPD 490

Query: 578 CWFQ-FDSLAILNLANNSF 595
             F    SL  + L +N +
Sbjct: 491 GVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 7e-12
 Identities = 84/502 (16%), Positives = 159/502 (31%), Gaps = 96/502 (19%)

Query: 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
           P  + LSL  N ++      I  LS+L +L LS N +R  +   +F     L+ L +S N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 426 SLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWD 485
            L    S        L ++ L              S N    L V            F +
Sbjct: 111 RLQ-NISCCPMA--SLRHLDL--------------SFNDFDVLPVCKE---------FGN 144

Query: 486 LTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNK 545
           LT  L +L LS  + +                             L    +    +S + 
Sbjct: 145 LTK-LTFLGLSAAKFR--------------------QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 546 FSGSISFLCSISSHLLTYLDLSNNLLSGRLPD--CWFQFDSLAILNLANNSFFGEIPDSM 603
             G    L   ++ +L  +   N+L S ++           L+ + L + +    +    
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 604 SFLRSIGSLSLYNNSLSGGLPSF-----FMNGSQLTLMDLGKNGLSG----EIPTWIGES 654
              R    L++    +            F     +  +++    ++     E  T+   +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 655 LPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL 714
           L +L++  +++  F  +        + + I  LS+++   I   C  + ++ T      L
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT-----FL 358

Query: 715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD- 773
           +   N + +              T K            ++ + L  N L  K   ++   
Sbjct: 359 NFTQNVFTDS-------VFQGCSTLKR-----------LQTLILQRNGL--KNFFKVALM 398

Query: 774 LVGLVALNLSNNNLT----GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829
              + +L   + +L               +S+  L+LS N   G +   L     + V+D
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456

Query: 830 LSYNNFSGKIPKG----TQLQR 847
           L  N     IPK       LQ 
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQE 477

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
              +  L  LD+S N+ +             +  L LSS    G +   L    K++VLD
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456

Query: 168 LRFNNL--FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLG 220
           L  N +          +++L +L+ L++A  +L    +   V   L SL  ++L 
Sbjct: 457 LHNNRIMSIPKD----VTHLQALQELNVASNQLKSVPD--GVFDRLTSLQYIWLH 505

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (253), Expect = 1e-23
 Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 24/242 (9%)

Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
               + + I L  N ++  +    F    NL   + L SN L      AF  +A L  LD
Sbjct: 29  GIPAASQRIFLHGNRIS-HVPAASFRACRNLT-ILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 296 LLSN-QLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWLYLAF 352
           L  N QLR V       +  L  L              +Q +  G     ++L++LYL  
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCG--------LQELGPGLFRGLAALQYLYLQD 138

Query: 353 NEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEAL 410
           N +   +PD       +L  L L  NR++    ++   L  L+ LLL  N +   +    
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

Query: 411 FSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG------SCKIGPRFPKWLQSQNQ 464
           F +L  L TL L  N+L+   +    P   L  + L        C+  P    WLQ    
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRG 255

Query: 465 TV 466
           + 
Sbjct: 256 SS 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 9e-23
 Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 9/210 (4%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL 173
              + L  N  S  P   F      L+ L L S   A         L+ L+ LDL  N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 174 FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLL 233
             S +      L  L  L L  C L +      +   L +L  LYL    L  +   +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 234 HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH 293
            +    +L  + L  N ++ S+    F    +L   + L  N++    P AF  +  L  
Sbjct: 151 DL---GNLTHLFLHGNRIS-SVPERAFRGLHSLD-RLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 294 LDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
           L L +N L  +P   L  + +L+ L  + N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 21/223 (9%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
           ++ + + L   ++S            R+LT L+L    L  I   +   +     LE +D
Sbjct: 32  AASQRIFLHGNRISHVPA--ASFRACRNLTILWLHSNVLARIDAAAFTGL---ALLEQLD 86

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMASLRHLDLLSNQLREV 304
           LS+N    S+ P  F+    L   + L    L   +    F  +A+L++L L  N L+ +
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLH-TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 305 PK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPD- 361
           P     ++ +L  L    N         I +V   +     SL+ L L  N +   +   
Sbjct: 145 PDDTFRDLGNLTHLFLHGNR--------ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 362 -LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
                  L  L L  N L+   ++++  L  L+ L L+ N   
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 12/194 (6%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSS-AQFAGPIPHQLGNLSKLQVLDLR 169
            ++LT L L  N  +      F G L  L +L LS  AQ     P     L +L  L L 
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIST 229
              L           L++L+YL L D  L    +      +L +LT+L+L    +  +  
Sbjct: 114 RCGL-QELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPE 170

Query: 230 PSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHM 288
            +   +    SL+ + L  N +   ++P  F     L   + L +N L  ++P  A   +
Sbjct: 171 RAFRGL---HSLDRLLLHQNRVA-HVHPHAFRDLGRL-MTLYLFANNLS-ALPTEALAPL 224

Query: 289 ASLRHLDLLSNQLR 302
            +L++L L  N   
Sbjct: 225 RALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 43/238 (18%)

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGE 327
                   L  ++P+     A+ + + L  N++  VP        +L  L    N     
Sbjct: 15  TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV---- 67

Query: 328 LSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISK 384
               +  + + +    + LE L L+ N    ++      G   L  L L+   L   +  
Sbjct: 68  ----LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 385 SI-GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFN 443
            +   L+ L+ L L  N+L+  + +  F +L +L  L L  N ++        P      
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS------SVPE----R 171

Query: 444 IFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
            F G           L        L +    ++ + P  F DL   L  L L  N + 
Sbjct: 172 AFRGLHS--------LDR------LLLHQNRVAHVHPHAFRDLGR-LMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 27/229 (11%)

Query: 343 SSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGN 400
           ++ + ++L  N I+  +P        +L IL L +N L    + +   L+ LE L LS N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 401 SLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQ 460
           +    +  A F  L  L TL L    L       +     L  ++L    +        +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 461 SQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDV 520
                  L +    IS +    F  L + L  L L  N +                   V
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVA-----------------HV 192

Query: 521 SSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNN 569
             + F          + +L L  N  S ++          L YL L++N
Sbjct: 193 HPHAFRD-----LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 63/307 (20%), Positives = 96/307 (31%), Gaps = 101/307 (32%)

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
             + Q + L  NR++   + S      L +L L  N L   I  A F+ L+ L+ L LSD
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFW 484
           N+                                                +  + P  F 
Sbjct: 90  NAQ-----------------------------------------------LRSVDPATFH 102

Query: 485 DLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKN 544
            L   L+ L+L    ++                 ++    F G             L+  
Sbjct: 103 GLGR-LHTLHLDRCGLQ-----------------ELGPGLFRG-------------LAA- 130

Query: 545 KFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNLANNSFFGEIPDSM 603
                           L YL L +N L   LPD  F+   +L  L L  N     +P+  
Sbjct: 131 ----------------LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR-ISSVPERA 172

Query: 604 -SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLS 662
              L S+  L L+ N ++   P  F +  +L  + L  N LS  +PT     L  L  L 
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

Query: 663 LRSNKFH 669
           L  N + 
Sbjct: 232 LNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 30/229 (13%)

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
           +  + +    IS +    F    N L  L L +N +                   + +  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLA-----------------RIDAAA 75

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FD 583
           F G        +  L+LS N    S+          L  L L    L   L    F+   
Sbjct: 76  FTGL-----ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 584 SLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642
           +L  L L +N+    +PD     L ++  L L+ N +S      F     L  + L +N 
Sbjct: 130 ALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLN 690
           ++  +       L  L+ L L +N     +P + L  L  +Q L L+ N
Sbjct: 189 VA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 49/284 (17%), Positives = 88/284 (30%), Gaps = 84/284 (29%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAILNL 590
           +P     + L  N+ S  +      +   LT L L +N+L+ R+    F     L  L+L
Sbjct: 30  IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 591 ANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649
           ++N+    +  +    L  + +L L    L                          E+  
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-------------------------ELGP 122

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
            +   L  L  L L+ N     +P      L ++  L L  N IS +  + F    ++ +
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVL 768
                                                          + L  N++    +
Sbjct: 182 -----------------------------------------------LLLHQNRV--AHV 192

Query: 769 EE--IMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRN 809
                 DL  L+ L L  NNL+  +       L++L +L L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           +   L +LT+L L  N  S  P   F G L  L  L L   + A   PH   +L +L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLA------DCKLSKFSNWVQ 206
            L  NNL S+   + L+ L +L+YL L       DC+      W+Q
Sbjct: 207 YLFANNL-SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 38/217 (17%), Positives = 60/217 (27%), Gaps = 33/217 (15%)

Query: 630 GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSL 689
                     + GL   +P  I         + L  N+             ++ IL L  
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 690 NNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSI 749
           N ++ I    F     + +     L +      N  LR  + P  F              
Sbjct: 66  NVLARIDAAAFTGLALLEQ-----LDL----SDNAQLR-SVDPATFHG------------ 103

Query: 750 LGLIKIIDLSSNKLGGKVLEE--IMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDL 806
           LG +  + L    L  + L       L  L  L L +N L   +       L +L  L L
Sbjct: 104 LGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160

Query: 807 SRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
             N        +   L  L  + L  N  +  +    
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
            L  L YL L  N     P   F   LG L+ L L   + +         L  L  L L 
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
            N + +  +      L  L  L L    LS      + L+ LR+L  L L
Sbjct: 186 QNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRL 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (257), Expect = 9e-23
 Identities = 43/287 (14%), Positives = 99/287 (34%), Gaps = 36/287 (12%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
               ++    +L+  ++    +    + L+S+  +   +  +         +  L ++T 
Sbjct: 17  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTK 69

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS--NLVDHIDLGS 274
           L+L    L  I   + L     K+L  + L  N + +     L ++     L   + L  
Sbjct: 70  LFLNGNKLTDIKPLTNL-----KNLGWLFLDENKIKD-----LSSLKDLKKL-KSLSLEH 118

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQN 334
           N +   I     H+  L  L L +N++ ++   L  ++ L  L    N++  ++      
Sbjct: 119 NGIS-DIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVPL--- 171

Query: 335 VSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLEL 394
                   + L+ LYL+ N I+  +  L G  +L +L L +             L     
Sbjct: 172 -----AGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQL 441
           +  +  SL    +  + S+    +   +  +         +     +
Sbjct: 226 VKNTDGSLV---TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.9 bits (238), Expect = 2e-20
 Identities = 59/339 (17%), Positives = 111/339 (32%), Gaps = 60/339 (17%)

Query: 182 LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSL 241
               +     +L    ++         + L S+  +     D+  +       I Y  ++
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQ-----GIQYLPNV 67

Query: 242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQL 301
             + L+ N LT+ I P                             ++ +L  L L  N++
Sbjct: 68  TKLFLNGNKLTD-IKP---------------------------LTNLKNLGWLFLDENKI 99

Query: 302 REVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD 361
           +++   L ++  LK L   +N +       I  +         LE LYL  N+IT  I  
Sbjct: 100 KDLS-SLKDLKKLKSLSLEHNGISD-----INGLV----HLPQLESLYLGNNKIT-DITV 148

Query: 362 LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQ 421
           L     L  LSLE+N+++  I   +  L+KL+ L LS N +   +     + L +LD L+
Sbjct: 149 LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLE 203

Query: 422 LSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRF----PKWLQSQNQTVALDVSNAGISD 477
           L       K  +  +       +      +            +  N    L      +S 
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 478 IVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGP 516
           I   ++  +T             +      +  +D  G 
Sbjct: 264 I---FYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGT 299

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDV 520
           +  ++    ++D V     +L + +  +  +N+++K       LP++++        + +
Sbjct: 24  IKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPNVTK--------LFL 72

Query: 521 SSNQFDGPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW 579
           + N+     PL    N+  L L +NK    +S L  +    L  L L +N +S  +    
Sbjct: 73  NGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSSLKDLKK--LKSLSLEHNGIS-DINGLV 128

Query: 580 FQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639
                L  L L NN         +S L  + +LSL +N +S          ++L  + L 
Sbjct: 129 -HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 183

Query: 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKC 699
           KN +S ++       L NL VL L S +           L     +  +  ++       
Sbjct: 184 KNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 700 FHNFTAMTKEKSSNLSIISNYYYN 723
                     K       +   + 
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 6e-10
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            SL  L+ L  L L  N  S       +  L +L  L L + +        L  L+KL  
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           L L  N +    ++  L+ L+ L+ L L+   +S        L+ L++L  L L   +  
Sbjct: 158 LSLEDNQI---SDIVPLAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECL 210

Query: 226 PISTPSLLHINYSKSLEVID 245
                   ++    +++  D
Sbjct: 211 NKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 9e-10
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 56/282 (19%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620
           +      +  +    PD    F      NL   S    +    + L SI  +   N+ + 
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 621 --GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCY 678
              G+         +T + L  N L+ +I      +L NL  L L  NK   ++   L  
Sbjct: 57  SVQGIQYL----PNVTKLFLNGNKLT-DIKPL--TNLKNLGWLFLDENKIK-DLSS-LKD 107

Query: 679 LSHIQILDLSLNNISGIIPKCFHNFTAMT-----KEKSSNLSIISNYYYNLGLRGMLMPL 733
           L  ++ L L  N IS I      +   +        K ++++++S               
Sbjct: 108 LKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITVLSR-------------- 151

Query: 734 IFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP 793
                           L  +  + L  N++    +  +  L  L  L LS N+++  +  
Sbjct: 152 ----------------LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRA 192

Query: 794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNF 835
            +  LK+LD L+L          +  S L + + +  +  + 
Sbjct: 193 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 1e-07
 Identities = 45/301 (14%), Positives = 89/301 (29%), Gaps = 67/301 (22%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593
                 NL K   +        ++S  +  +  +N+ +   +        ++  L L  N
Sbjct: 21  AETIKDNLKKKSVT-DAVTQNELNS--IDQIIANNSDIK-SVQGIQ-YLPNVTKLFLNGN 75

Query: 594 SFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE 653
                       L  I  L+   N               L  + L +N +  ++ +   +
Sbjct: 76  K-----------LTDIKPLTNLKN---------------LGWLFLDENKIK-DLSSL--K 106

Query: 654 SLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN 713
            L  L  LSL  N    +I   L +L  ++ L L  N I+ I        T +       
Sbjct: 107 DLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDT----- 157

Query: 714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD 773
           LS+  N   ++                       + L  ++ + LS N +    L  +  
Sbjct: 158 LSLEDNQISDI--------------------VPLAGLTKLQNLYLSKNHI--SDLRALAG 195

Query: 774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833
           L  L  L L +     +       L   + +  +        P  +S        ++ ++
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWH 253

Query: 834 N 834
            
Sbjct: 254 L 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 8e-05
 Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNL-GLRGM--L 730
           F     +     +L   +++  +    +   ++ +     +   ++   ++ G++ +  +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQ-----IIANNSDIKSVQGIQYLPNV 67

Query: 731 MPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQ 790
             L      K    +  + L  +  + L  NK+  K L  + DL  L +L+L +N ++  
Sbjct: 68  TKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGIS-D 123

Query: 791 ITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS 836
           I   +  L  L+ L L  N       + LSRL  L  + L  N  S
Sbjct: 124 ING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.9 bits (241), Expect = 6e-22
 Identities = 55/286 (19%), Positives = 92/286 (32%), Gaps = 48/286 (16%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLG--KLSELALSSAQFAGPIPHQLGNLSKL 163
             ++K   L  L +         +   +  LG   L EL L + +  G  P  L   +  
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 164 QVLDLRFNNLFSSGNLDWLSYLS-----SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
            +  L   N+  +    WL+ L       L+ L +A      FS   + +    +L+ L 
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC--EQVRVFPALSTLD 179

Query: 219 LGYCDL-PPISTPSLLHINYSKSLEVIDLSNNYLT--NSIYPWLFNVSSNLVDHIDLGSN 275
           L            S L      +L+V+ L N  +   + +   L      L   +DL  N
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ-GLDLSHN 238

Query: 276 QLHGSIP-LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQN 334
            L  +    +    + L  L+L    L++VPK L                          
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP------------------------- 273

Query: 335 VSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTG 380
                   + L  L L++N +    P     P +  LSL+ N    
Sbjct: 274 --------AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.9 bits (228), Expect = 3e-20
 Identities = 46/282 (16%), Positives = 81/282 (28%), Gaps = 21/282 (7%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLS-KFSNWVQVLSNLRSLT 215
            G    L+ L  R +     G    +    SL+ L +   ++  +       +  +  L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 216 NLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN--SIYPWLFNVSSNLVDHIDLG 273
            L L   ++   + P LL       L +++L N       +    L       +  + + 
Sbjct: 99  ELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 274 SNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF-----LGNMSSLKRLVFSYNELRGEL 328
                           +L  LDL  N                  +L+ L      +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---- 213

Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLG--GFPSLQILSLENNRLTGTISKSI 386
                  S+ +     L+ L L+ N +              L  L+L    L   + K +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272

Query: 387 GQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
               KL +L LS N L    S      + +L    L  N   
Sbjct: 273 PA--KLSVLDLSYNRLDRNPSPDELPQVGNLS---LKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 20/224 (8%)

Query: 489 QLYYLNLSNNEMKGKLPDLSRKFDSYGP--GIDVSSNQFDGPIP-----LLPPNVSSLNL 541
            L  L +    +  ++   + +         + + + +  G  P        P+++ LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 542 SKNKFSGSISFLCSISSHL---LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE 598
               ++   ++L  +   L   L  L ++         +    F +L+ L+L++N   GE
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 599 IPDSMSF----LRSIGSLSLYNN---SLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI 651
                +       ++  L+L N    + SG   +      QL  +DL  N L        
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 652 GESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695
            +    L  L+L                + + +LDLS N +   
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDRN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 1e-16
 Identities = 48/269 (17%), Positives = 87/269 (32%), Gaps = 36/269 (13%)

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLT--NLYLGYCDLPPI 227
           +++ F+      +      R L+    ++   ++  Q    ++SL+   L +    +P  
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 228 STPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP----L 283
                L +     L+ + L N  +T +  P L   +   ++ ++L +            L
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 284 AFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
                  L+ L +          + +    +L  L  S N   GE               
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC------- 196

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT---GTISKSIGQLSKLELLLLSG 399
                                 FP+LQ+L+L N  +    G  S       +L+ L LS 
Sbjct: 197 -------------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           NSLR           S L++L LS   L 
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 5e-16
 Identities = 45/235 (19%), Positives = 72/235 (30%), Gaps = 39/235 (16%)

Query: 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLG-----KLSELALSSAQFAGPIP 154
           + GT  P LL+        L+  N S +    ++  L       L  L+++ A       
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 155 HQLGNLSKLQVLDLRFNNLFSSGNLDW---LSYLSSLRYLDLADCKLSKFSNWVQVLSNL 211
            Q+     L  LDL  N       L          +L+ L L +  +   S     L+  
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
           R                            L+ +DLS+N L ++      +  S L   ++
Sbjct: 227 R--------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLN-SLN 259

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRG 326
           L    L   +P        L  LDL  N+L   P     +  +  L    N    
Sbjct: 260 LSFTGLK-QVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 5e-16
 Identities = 56/269 (20%), Positives = 85/269 (31%), Gaps = 40/269 (14%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
           ++R   + S  L    + L  +S L+ L     E+ G     +            L  L 
Sbjct: 74  TVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPL-----LEATGPDLNILN 127

Query: 350 LAFNEITGTIPDLGGF-----PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRG 404
           L           L        P L++LS+          + +     L  L LS N   G
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 405 ---VISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS 461
              +IS        +L  L L +  +                                 +
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGME---------------------TPSGVCSALAAA 226

Query: 462 QNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVS 521
           + Q   LD+S+  + D       D  +QL  LNLS   +K     L  K       +D+S
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV----LDLS 282

Query: 522 SNQFDG-PIPLLPPNVSSLNLSKNKFSGS 549
            N+ D  P P   P V +L+L  N F  S
Sbjct: 283 YNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 62/326 (19%), Positives = 91/326 (27%), Gaps = 45/326 (13%)

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDS 584
           F  P P      + L  +  +  G           L   L   +            +  S
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGG-------GRSLEYLLKRVDTEADLGQFTDIIKSLS 69

Query: 585 LAILNLANNSFFGEIPDSMSFLRSIGS---LSLYNNSLSGGLPS--FFMNGSQLTLMDLG 639
           L  L +        I      +  I     L+L N  ++G  P       G  L +++L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 640 KNGLSG---EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGII 696
               +     +        P L VLS+           Q+     +  LDLS N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 697 P----KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGL 752
                 C   F  +      N  + +       L    + L                   
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL------------------- 230

Query: 753 IKIIDLSSNKLGGKVLEEIMDLVG-LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811
            + +DLS N L         D    L +LNLS   L  Q+   +     L  LDLS N  
Sbjct: 231 -QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNR- 285

Query: 812 FGGIPSSLSRLRLLSVMDLSYNNFSG 837
               PS    L  +  + L  N F  
Sbjct: 286 LDRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 106 PSLLKLQHLTYLDLSWNNFSG-SPIPEFI--GSLGKLSELALSSAQFA---GPIPHQLGN 159
             +     L+ LDLS N   G   +   +       L  LAL +A      G        
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 160 LSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
             +LQ LDL  N+L  +       + S L  L+L+   L +    +        L+ L L
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-----PAKLSVLDL 281

Query: 220 GYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS 254
            Y  L    +P  L       +  + L  N   +S
Sbjct: 282 SYNRLDRNPSPDEL-----PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 34/243 (13%), Positives = 69/243 (28%), Gaps = 50/243 (20%)

Query: 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE--SLPNLVVLSLRSNKFH 669
           L   +     G  +  +    L  + +    +   I         +  L  L+L + +  
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 670 GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGM 729
           G  P  L   +   +  L+L                       N+S  +   +   L+  
Sbjct: 109 GTAPPPLLEATGPDLNILNL----------------------RNVSWATRDAWLAELQQW 146

Query: 730 LMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG 789
           L P +                   K++ ++         E++     L  L+LS+N   G
Sbjct: 147 LKPGL-------------------KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 790 QI----TPRIGQLKSLDFLDLSRNHF---FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 842
           +          +  +L  L L         G   +  +    L  +DLS+N+        
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 843 TQL 845
           +  
Sbjct: 248 SCD 250

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.9 bits (247), Expect = 9e-22
 Identities = 68/358 (18%), Positives = 124/358 (34%), Gaps = 63/358 (17%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
           L  L  L  L LS N    +        L  L E  L                 +L+ L 
Sbjct: 109 LRTLPTLQELHLSDNLLGDA-------GLQLLCEGLLD-------------PQCRLEKLQ 148

Query: 168 LRFNNLFSSGNLD---WLSYLSSLRYLDLADCKLSKFSNWVQVLS-----NLRSLTNLYL 219
           L + +L ++        L      + L +++  +++    V+VL      +   L  L L
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLEALKL 206

Query: 220 GYCDLPPISTPSL-LHINYSKSLEVIDLSNNYLTNS----IYPWLFNVSSNLVDHIDLGS 274
             C +   +   L   +    SL  + L +N L +     + P L + SS L   + +  
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL-RTLWIWE 265

Query: 275 NQLH----GSIPLAFGHMASLRHLDLLSNQLR-EVPKFLGNM-----SSLKRLVFSYNEL 324
             +     G +        SL+ L L  N+L  E  + L          L+ L       
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 325 RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT-IPDLGGF-----PSLQILSLENNRL 378
               +    + SS   +N  L  L ++ N +    + +L          L++L L +  +
Sbjct: 326 T---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 379 T----GTISKSIGQLSKLELLLLSGNSL--RGV--ISEALFSNLSSLDTLQLSDNSLT 428
           +     +++ ++     L  L LS N L   G+  + E++      L+ L L D   +
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 57/349 (16%)

Query: 112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALS----SAQFAGPIPHQLGNLSKLQVLD 167
             +  LD+     S +   E +  L +   + L     +      I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 168 LRFNNLFSSGNLDWLSYLSS----LRYLDLADCKLSKFSNWV--QVLSNLRSLTNLYLGY 221
           LR N L   G    L  L +    ++ L L +C L+     V    L  L +L  L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 222 CDLPPISTPSLLH--INYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG 279
             L       L    ++    LE + L    L+ +    L +V         L +     
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV---------LRAKP--- 170

Query: 280 SIPLAFGHMASLRHLDLLSNQLREV------PKFLGNMSSLKRLVFSYNELRGELSEFIQ 333
                       + L + +N + E            +   L+ L      +    S+  +
Sbjct: 171 ----------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCR 217

Query: 334 NVSSGSTKNSSLEWLYLAFNEITGT------IPDLGGFPSLQILSLENNRLT----GTIS 383
           ++       +SL  L L  N++            L     L+ L +    +T    G + 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 384 KSIGQLSKLELLLLSGNSLR--GV--ISEALFSNLSSLDTLQLSDNSLT 428
           + +     L+ L L+GN L   G   + E L      L++L +   S T
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 76/358 (21%), Positives = 124/358 (34%), Gaps = 63/358 (17%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
           L     L  L+L  N             +  + +  L +               K+Q L 
Sbjct: 52  LRVNPALAELNLRSNELGDV-------GVHCVLQ-GLQTPS------------CKIQKLS 91

Query: 168 LRFNNLFSSGNLD---WLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR-----SLTNLYL 219
           L+   L  +G       L  L +L+ L L+D  L      +Q+L          L  L L
Sbjct: 92  LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG--LQLLCEGLLDPQCRLEKLQL 149

Query: 220 GYCDLPPISTPSLLH-INYSKSLEVIDLSNNYLTNS----IYPWLFNVSSNLVDHIDLGS 274
            YC L   S   L   +      + + +SNN +  +    +   L +    L + + L S
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL-EALKLES 208

Query: 275 NQLH----GSIPLAFGHMASLRHLDLLSNQLRE------VPKFLGNMSSLKRLVFSYNEL 324
             +       +       ASLR L L SN+L +       P  L   S L+ L      +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

Query: 325 RGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT----IPDLGGFP--SLQILSLENNRL 378
               ++   ++        SL+ L LA NE+       + +    P   L+ L +++   
Sbjct: 269 T---AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 379 TGT----ISKSIGQLSKLELLLLSGNSLR--GV--ISEALFSNLSSLDTLQLSDNSLT 428
           T       S  + Q   L  L +S N L   GV  + + L    S L  L L+D  ++
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 91/458 (19%), Positives = 153/458 (33%), Gaps = 104/458 (22%)

Query: 290 SLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEW 347
            ++ LD+   +L +    + L  +   + +      L        +++SS    N +L  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAE 60

Query: 348 LYLAFNEITGTIPDLG----------GFPSLQILSLENNRLTGT----ISKSIGQLSKLE 393
           L L  NE+     D+G              +Q LSL+N  LTG     +S ++  L  L+
Sbjct: 61  LNLRSNELG----DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 394 LLLLSGNSL--RGV--ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
            L LS N L   G+  + E L      L+ LQL   SL+                   SC
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-----------------SC 159

Query: 450 KIGPRFPKWLQSQNQTVALDVSNAGISD----IVPDWFWDLTNQLYYLNLSNNEMKGK-L 504
           +        L+++     L VSN  I++    ++     D   QL  L L +  +     
Sbjct: 160 EP---LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 505 PDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGS-ISFLCSISSHL--- 560
            DL     S                     ++  L L  NK     ++ LC    H    
Sbjct: 217 RDLCGIVASK-------------------ASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 561 LTYLDLSNNLLSGR--------LPDCWFQFDSLAILNLANNSFFGE----IPDSMSF-LR 607
           L  L +    ++ +        L       +SL  L+LA N    E    + +++     
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAK----ESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 608 SIGSLSLYNNSLSG----GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL----PNLV 659
            + SL + + S +        S       L  + +  N L       + + L      L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 660 VLSLRSNKFH----GNIPFQLCYLSHIQILDLSLNNIS 693
           VL L           ++   L     ++ LDLS N + 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 3e-08
 Identities = 66/396 (16%), Positives = 119/396 (30%), Gaps = 87/396 (21%)

Query: 342 NSSLEWLYLAFNEIT--GTIPDLGGFPSLQILSLENNRLTGT----ISKSIGQLSKLELL 395
           +  ++ L +   E++       L      Q++ L++  LT      IS ++     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 396 LLSGNSL--RGV--ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI 451
            L  N L   GV  + + L +    +  L L +  LT                 L S   
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT---GAGCG--------VLSST-- 108

Query: 452 GPRFPKWLQSQNQTVALDVSNAGISD----IVPDWFWDLTNQLYYLNLSNNEMKGK-LPD 506
                  L++      L +S+  + D    ++ +   D   +L  L L    +       
Sbjct: 109 -------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 507 LSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGS-ISFLCSISSH---LLT 562
           L+    +                    P+   L +S N  + + +  LC         L 
Sbjct: 162 LASVLRAK-------------------PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 563 YLDLSNNLLSGRLPDCWFQFD-------SLAILNLANNSFFGE-----IPDSMSFLRSIG 610
            L L +  ++    D             SL  L L +N           P  +     + 
Sbjct: 203 ALKLESCGVT---SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 611 SLSLYNNSLS----GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL----PNLVVLS 662
           +L ++   ++    G L         L  + L  N L  E    + E+L      L  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 663 LRSNKFHGNIPFQ-----LCYLSHIQILDLSLNNIS 693
           ++S  F            L     +  L +S N + 
Sbjct: 320 VKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 60/347 (17%), Positives = 105/347 (30%), Gaps = 66/347 (19%)

Query: 535 NVSSLNLSKNKFSG-SISFLCS--ISSHLLTYLDLSNNLLSG----------RLPDCWFQ 581
            +  L+L     +G     L S   +   L  L LS+NLL              P C   
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC--- 142

Query: 582 FDSLAILNLANNSFFGE----IPDSMSFLRSIGSLSLYNNSLSGG-----LPSFFMNGSQ 632
              L  L L   S        +   +        L++ NN ++             +  Q
Sbjct: 143 --RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 633 LTLMDLGKNGLSGEIPTWIGESL---PNLVVLSLRSNKFHGN-----IPFQLCYLSHIQI 684
           L  + L   G++ +    +   +    +L  L+L SNK          P  L   S ++ 
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 685 LDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGM--LMPLIFFDTWKGG 742
           L +    I+    K   +   + +    +L  +S     LG  G   L   +     +  
Sbjct: 261 LWIWECGIT---AKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQ-- 314

Query: 743 QYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVG----LVALNLSNNNLTGQITPRIGQL 798
                     ++ + + S             ++     L+ L +SNN L       + Q 
Sbjct: 315 ----------LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364

Query: 799 -----KSLDFLDLSRNHF----FGGIPSSLSRLRLLSVMDLSYNNFS 836
                  L  L L+           + ++L     L  +DLS N   
Sbjct: 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 57/370 (15%), Positives = 107/370 (28%), Gaps = 102/370 (27%)

Query: 518 IDVSSNQF--DGPIPLLP--PNVSSLNLSKNKFS-GSISFLCSISSHL--LTYLDLSNNL 570
           +D+   +        LLP       + L     +      + S       L  L+L +N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 571 LSG----------RLPDCWFQFDSLAILNLANNSFFGE----IPDSMSFLRSIGSLSLYN 616
           L            + P C      +  L+L N    G     +  ++  L ++  L L +
Sbjct: 68  LGDVGVHCVLQGLQTPSC-----KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 617 NSLS-GGLPSFFM----NGSQLTLMDLGKNGLSGEIPTWIGESL---PNLVVLSLRSNKF 668
           N L   GL            +L  + L    LS      +   L   P+   L++ +N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 669 HGNIPFQLC-YLSH----IQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYN 723
           +      LC  L      ++ L L    ++        +   +   K+S           
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDLCGIVASKAS----------- 228

Query: 724 LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLV-----GLV 778
                                        ++ + L SNKLG   + E+   +      L 
Sbjct: 229 -----------------------------LRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 779 ALNLSNNNLTGQ----ITPRIGQLKSLDFLDLSRNHF--------FGGIPSSLSRLRLLS 826
            L +    +T +    +   +   +SL  L L+ N             +     +L  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL- 318

Query: 827 VMDLSYNNFS 836
              +   +F+
Sbjct: 319 --WVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 8e-06
 Identities = 75/508 (14%), Positives = 135/508 (26%), Gaps = 131/508 (25%)

Query: 390 SKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC 449
             ++ L +    L       L   L     ++L D  LT     D           + S 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-----------ISSA 51

Query: 450 KIGPRFPKWLQSQNQTVALDVSNAGISD----IVPDWFWDLTNQLYYLNLSNNEMKGK-L 504
                    L+       L++ +  + D     V       + ++  L+L N  + G   
Sbjct: 52  ---------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 505 PDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGS-ISFLCSISSHL--- 560
             LS    +                    P +  L+LS N    + +  LC         
Sbjct: 103 GVLSSTLRTL-------------------PTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 561 LTYLDLSNNLLSGR--------LPDCWFQFDSLAILNLANNSFFGEIPDSMSFL------ 606
           L  L L    LS          L            L ++NN         +  L      
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKP----DFKELTVSNNDI---NEAGVRVLCQGLKD 196

Query: 607 --RSIGSLSLYNNSLS----GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL----P 656
               + +L L +  ++      L     + + L  + LG N L       +   L     
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 657 NLVVLSLRSNKFH----GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712
            L  L +          G++   L     ++ L L+ N +     +          E   
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG---DEGARLLCETLLEPGC 313

Query: 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGL-------IKIIDLSSNKLGG 765
            L  +     +                        S           +  + +S+N+L  
Sbjct: 314 QLESLWVKSCSFTAACC------------------SHFSSVLAQNRFLLELQISNNRLED 355

Query: 766 KVLEEIMDLVG-----LVALNLSNNNLTGQ----ITPRIGQLKSLDFLDLSRNH------ 810
             + E+   +G     L  L L++ +++      +   +    SL  LDLS N       
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415

Query: 811 --FFGGIPSSLSRLRLLSVMDLSYNNFS 836
                 +      L  L    L    +S
Sbjct: 416 LQLVESVRQPGCLLEQL---VLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 37/163 (22%), Positives = 51/163 (31%), Gaps = 16/163 (9%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGK----LSELALS----SAQFAGPIPHQLG 158
            L   + L  L L+ N            +L +    L  L +     +A         L 
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338

Query: 159 NLSKLQVLDLRFNNLFSSGNLDWLSYL----SSLRYLDLADCKLSKFSNW--VQVLSNLR 212
               L  L +  N L  +G  +    L    S LR L LADC +S  S       L    
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 213 SLTNLYLGYCDLPPISTPSLLHI--NYSKSLEVIDLSNNYLTN 253
           SL  L L    L       L+         LE + L + Y + 
Sbjct: 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 36/276 (13%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
               ++    +L+  ++    +    + L+S+  +   +  +         +  L ++T 
Sbjct: 20  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTK 72

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS--NLVDHIDLGS 274
           L+L    L  I   + L     K+L  + L  N + +     L ++     L   + L  
Sbjct: 73  LFLNGNKLTDIKPLANL-----KNLGWLFLDENKVKD-----LSSLKDLKKL-KSLSLEH 121

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQN 334
           N +   I     H+  L  L L +N++ ++   L  ++ L  L    N++  ++      
Sbjct: 122 NGIS-DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVPL--- 174

Query: 335 VSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLEL 394
                   + L+ LYL+ N I+  +  L G  +L +L L +       +K I   S L +
Sbjct: 175 -----AGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECL---NKPINHQSNLVV 225

Query: 395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLK 430
                N+   +++  + S+    +   +  +     
Sbjct: 226 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 21/170 (12%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           SL  L+ L  L L  N  S       +  L +L  L L + +        L  L+KL  L
Sbjct: 107 SLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTL 161

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
            L  N +     +  L+ L+ L+ L L+   +S        L+ L++L  L L   +   
Sbjct: 162 SLEDNQISD---IVPLAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLN 214

Query: 227 ISTPSLLHINYSKSLEVID--------LSNNY-LTNSIYPWLFNVSSNLV 267
                  ++    +++  D        +S++         W     +N V
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 466 VALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDV 520
           +  ++    ++D V     +L + +  +  +N+++K       LP++++        + +
Sbjct: 27  IKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSVQGIQYLPNVTK--------LFL 75

Query: 521 SSNQFDGPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW 579
           + N+     PL    N+  L L +NK    +S L  +    L  L L +N +S  +    
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVK-DLSSLKDLKK--LKSLSLEHNGIS-DINGLV 131

Query: 580 FQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG 639
                L  L L NN         +S L  + +LSL +N +S          ++L  + L 
Sbjct: 132 -HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 186

Query: 640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKC 699
           KN +S ++       L NL VL L S +           L     +  +  ++       
Sbjct: 187 KNHIS-DLRAL--AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

Query: 700 FHNFTAMTKEKSSNLSIISNYYYN 723
                     K       +   + 
Sbjct: 244 DDGDYEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 35/184 (19%)

Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712
           ++    +  +L+       +      L+ I  +  + ++I  +  +       +TK   +
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 76

Query: 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM 772
              +             + PL              + L  +  + L  NK+  K L  + 
Sbjct: 77  GNKLTD-----------IKPL--------------ANLKNLGWLFLDENKV--KDLSSLK 109

Query: 773 DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY 832
           DL  L +L+L +N ++  I   +  L  L+ L L  N       + LSRL  L  + L  
Sbjct: 110 DLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLED 165

Query: 833 NNFS 836
           N  S
Sbjct: 166 NQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 48/303 (15%), Positives = 95/303 (31%), Gaps = 71/303 (23%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593
                 NL K   +        ++S  +  +  +N+ +   +        ++  L L  N
Sbjct: 24  AETIKDNLKKKSVT-DAVTQNELNS--IDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 78

Query: 594 SFFGEIPD--SMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI 651
               ++ D   ++ L+++G L L  N +     S   +  +L  + L  NG+S +I    
Sbjct: 79  ----KLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS-DINGL- 130

Query: 652 GESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS 711
              LP L  L L +NK   +I   L  L+ +  L L  N IS                  
Sbjct: 131 -VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS------------------ 169

Query: 712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI 771
            ++  ++                               L  ++ + LS N +    L  +
Sbjct: 170 -DIVPLAG------------------------------LTKLQNLYLSKNHI--SDLRAL 196

Query: 772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLS 831
             L  L  L L +     +       L   + +  +        P  +S        ++ 
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 832 YNN 834
           ++ 
Sbjct: 255 WHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 48/262 (18%), Positives = 90/262 (34%), Gaps = 54/262 (20%)

Query: 581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDL 638
            F      NL   S    +    + L SI  +   N+ +    G+         +T + L
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL----PNVTKLFL 75

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
             N L+ +I      +L NL  L L  NK   ++   L  L  ++ L L  N IS I   
Sbjct: 76  NGNKLT-DIKPL--ANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDING- 129

Query: 699 CFHNFTAMT-----KEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI 753
              +   +        K ++++++S                               L  +
Sbjct: 130 -LVHLPQLESLYLGNNKITDITVLSR------------------------------LTKL 158

Query: 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG 813
             + L  N++    +  +  L  L  L LS N+++  +   +  LK+LD L+L       
Sbjct: 159 DTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLN 214

Query: 814 GIPSSLSRLRLLSVMDLSYNNF 835
              +  S L + + +  +  + 
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSL 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 34/254 (13%)

Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNL---VDHIDLGSNQLHGSIPLAFGHMASLRHLDL 296
           S   ++     LT         +  +L      + L  N L+            L  L+L
Sbjct: 11  SHLEVNCDKRNLTA--------LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 297 LSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT 356
              +L ++    G +  L  L  S+N+L        Q++        +L  L ++FN +T
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSFNRLT 113

Query: 357 GTIPD--LGGFPSLQILSLENNRLTGTISKSI-GQLSKLELLLLSGNSLRGVISEALFSN 413
            ++P   L G   LQ L L+ N L  T+   +     KLE L L+ N+L   +   L + 
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG------SCKIGPRFPKWLQSQNQTVA 467
           L +LDTL L +NSL       +     L   FL       +C+I   F +WLQ   + V 
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVY 228

Query: 468 LDVSNAGISDIVPD 481
           +      +  +  +
Sbjct: 229 VWKQGVDVKAMTSN 242

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 21/212 (9%)

Query: 114 LTYLDLSWNNFSGSP--IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFN 171
              ++    N +  P  +P         + L LS           L   ++L  L+L   
Sbjct: 12  HLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 172 NLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPS 231
            L     L     L  L  LDL+  +L        +   L +LT L + +  L  +   +
Sbjct: 66  ELTK---LQVDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 232 LLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMAS 290
           L  +     L+ + L  N L  ++ P L   +  L + + L +N L   +P      + +
Sbjct: 120 LRGL---GELQELYLKGNELK-TLPPGLLTPTPKL-EKLSLANNNLT-ELPAGLLNGLEN 173

Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYN 322
           L  L L  N L  +PK       L       N
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 54/261 (20%), Positives = 78/261 (29%), Gaps = 67/261 (25%)

Query: 339 STKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS 398
            +K +S   +      +T  +P         IL L  N L      ++   ++L  L L 
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW 458
              L  +    +   L  L TL LS N L                            P  
Sbjct: 64  RAELTKL---QVDGTLPVLGTLDLSHNQLQ-------------------------SLPLL 95

Query: 459 LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGI 518
            Q+      LDVS   ++ +       L   L  L L  NE+K  LP          PG+
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELK-TLP----------PGL 143

Query: 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL------LTYLDLSNNLLS 572
                         P  +  L+L+ N        L  + + L      L  L L  N L 
Sbjct: 144 ------LTP----TP-KLEKLSLANNN-------LTELPAGLLNGLENLDTLLLQENSLY 185

Query: 573 GRLPDCWFQFDSLAILNLANN 593
             +P  +F    L    L  N
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 10/151 (6%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620
            T L LS NLL          +  L  LNL       ++      L  +G+L L +N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ 90

Query: 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP---FQLC 677
             LP        LT++D+  N L+  +P      L  L  L L+ N+    +P       
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT-- 145

Query: 678 YLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
               ++ L L+ NN++ +     +    +  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLA 591
           LP + + L+LS+N    + S    +    LT L+L    L+ +L         L  L+L+
Sbjct: 29  LPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVDG-TLPVLGTLDLS 85

Query: 592 NNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWI 651
           +N     +P     L ++  L +  N L+           +L  + L  N L   +P  +
Sbjct: 86  HNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL 143

Query: 652 GESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSLNNISGIIPKCFHN 702
               P L  LSL +N     +P        L ++  L L  N++  I    F +
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLN--GLENLDTLLLQENSLYTIPKGFFGS 194

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 40/204 (19%)

Query: 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN 671
           L L  N L     +  M  ++LT ++L +  L+ ++      +LP L  L L  N+   +
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQ-S 91

Query: 672 IPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRG--- 728
           +P     L  + +LD+S N ++ +          + +               L L+G   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE---------------LYLKGNEL 136

Query: 729 -MLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM--DLVGLVALNLSNN 785
             L P +             +    ++ + L++N L    L   +   L  L  L L  N
Sbjct: 137 KTLPPGLL------------TPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQEN 182

Query: 786 NLTGQITPRIGQLKSLDFLDLSRN 809
           +L   I         L F  L  N
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGN 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.1 bits (231), Expect = 1e-19
 Identities = 41/247 (16%), Positives = 86/247 (34%), Gaps = 37/247 (14%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
                +   + L L+  N S   +P+ +    +++ L ++       +P    +L  L  
Sbjct: 53  LKECLINQFSELQLNRLNLSS--LPDNLPP--QITVLEITQNAL-ISLPELPASLEYLDA 107

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
            D R + L            +SL++LD+ + +L+              L  +      L 
Sbjct: 108 CDNRLSTLPEL--------PASLKHLDVDNNQLTMLP------ELPALLEYINADNNQL- 152

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
               P L       SLEV+ + NN LT      L  +  +L   +D+ +N L  S+P   
Sbjct: 153 -TMLPELP-----TSLEVLSVRNNQLTF-----LPELPESLE-ALDVSTNLLE-SLPAVP 199

Query: 286 GHMASLR----HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTK 341
                            N++  +P+ + ++     ++   N L   + E +   ++    
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 342 NSSLEWL 348
           +    + 
Sbjct: 260 HGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 8e-19
 Identities = 60/293 (20%), Positives = 102/293 (34%), Gaps = 46/293 (15%)

Query: 117 LDLSWNNFSGSPIPEFIGSLGKLSELALSS---AQFAGPIPHQLGNLSKLQVLDLRFNNL 173
            +  +N  SG+   ++  +  K  + AL      +    +   L  +++   L L   NL
Sbjct: 15  QNSFYNTISGTY-ADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 174 FSSGNLDWL--SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPS 231
            S      L  +    +  L++    L              SL  L      L  +  P 
Sbjct: 72  SS------LPDNLPPQITVLEITQNALISLPE------LPASLEYLDACDNRLSTL--PE 117

Query: 232 LLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL 291
           L       SL+ +D+ NN LT      L  + + L  +I+  +NQL   +P       SL
Sbjct: 118 LP-----ASLKHLDVDNNQLT-----MLPELPALLE-YINADNNQLT-MLPELPT---SL 162

Query: 292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351
             L + +NQL  +P+   +   L+ L  S N L   L               +  +    
Sbjct: 163 EVLSVRNNQLTFLPELPES---LEALDVSTNLLE-SLPAVPVRNHH---SEETEIFFRCR 215

Query: 352 FNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
            N IT  IP+ +        + LE+N L+  I +S+ Q +             
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 3e-16
 Identities = 55/353 (15%), Positives = 106/353 (30%), Gaps = 84/353 (23%)

Query: 370 ILSLENNRLTGTISKSIGQLSKLELLLLSGNS---LRGVISEALFSNLSSLDTLQLSDNS 426
             +   N ++GT +       K E   L G +      ++ E L +  S L    L+  +
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ---LNRLN 70

Query: 427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDL 486
           L+                      +    P  +        L+++   +  + P+    L
Sbjct: 71  LS---------------------SLPDNLPPQITV------LEITQNALISL-PELPASL 102

Query: 487 TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKF 546
                YL+  +N +                            +P LP ++  L++  N+ 
Sbjct: 103 E----YLDACDNRLST--------------------------LPELPASLKHLDVDNNQL 132

Query: 547 SGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFL 606
           +             L Y++  NN L+  LP+      SL +L++ NN     +P+    L
Sbjct: 133 TMLPELPAL-----LEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPELPESL 182

Query: 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLM----DLGKNGLSGEIPTWIGESLPNLVVLS 662
               +L +  N L   LP+  +               +N ++  IP  I  SL     + 
Sbjct: 183 E---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTII 236

Query: 663 LRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS 715
           L  N     I   L   +            S    +       +    ++   
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 5e-16
 Identities = 67/366 (18%), Positives = 118/366 (32%), Gaps = 33/366 (9%)

Query: 488 NQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFS 547
           NQ   L L+       L  L          ++++ N     +P LP ++  L+   N+ S
Sbjct: 59  NQFSELQLNRL----NLSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLS 113

Query: 548 GSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR 607
              +     +S  L +LD+ NN L+  LP+       L  +N  NN     +P+  + L 
Sbjct: 114 ---TLPELPAS--LKHLDVDNNQLT-MLPE---LPALLEYINADNNQL-TMLPELPTSLE 163

Query: 608 SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE---SLPNLVVLSLR 664
               LS+ NN L+  LP        L  +D+  N L   +P        S    +    R
Sbjct: 164 V---LSVRNNQLTF-LPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 665 SNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNL 724
            N+   +IP  +  L     + L  N +S  I +     TA              Y+   
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR-----IYFSMS 269

Query: 725 GLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSN 784
             +   +     D       E K    + +I     ++         +D +       + 
Sbjct: 270 DGQQNTLHRPLADAVTAWFPENKQ-SDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNT 328

Query: 785 NNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQ 844
           +    Q+   + +L +   L             S      L+  +L       +  +G  
Sbjct: 329 SGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLF 388

Query: 845 LQRFGA 850
               GA
Sbjct: 389 DNDTGA 394

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 8e-14
 Identities = 51/302 (16%), Positives = 99/302 (32%), Gaps = 54/302 (17%)

Query: 518 IDVSSNQFDGPIPLLPPNVSS-------LNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570
             +S N F   I     +  S         L     + ++S L     +  + L L+   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
           LS  LPD       + +L +  N+    +P+  + L     L   +N LS  LP    + 
Sbjct: 71  LS-SLPDNLPP--QITVLEITQNAL-ISLPELPASLEY---LDACDNRLST-LPELPAS- 121

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
             L  +D+  N L     T + E    L  ++  +N+    +P     L   ++L +  N
Sbjct: 122 --LKHLDVDNNQL-----TMLPELPALLEYINADNNQLT-MLPELPTSL---EVLSVRNN 170

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
            ++ + P+   +           L + +N                 ++            
Sbjct: 171 QLTFL-PELPESLE--------ALDVSTN---------------LLESLPAVPVRNHHSE 206

Query: 751 GLIKIIDLSSNKLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN 809
                     N++    + E I+ L     + L +N L+ +I   + Q  +       R 
Sbjct: 207 ETEIFFRCRENRI--THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 810 HF 811
           +F
Sbjct: 265 YF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 7e-13
 Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 63/330 (19%)

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFL-CSISSHL-----LTYLDLSNNLLSGRLPDCWFQF 582
           + ++ P  ++ +LS+N F  +IS       S             + N     L +C    
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--LI 58

Query: 583 DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG 642
           +  + L L   +    +PD+      I  L +  N+L   LP      + L  +D   N 
Sbjct: 59  NQFSELQLNRLNL-SSLPDN--LPPQITVLEITQNALIS-LPELP---ASLEYLDACDNR 111

Query: 643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702
           LS  +P    E   +L  L + +N+    +P     L   + ++   N ++ + P+   +
Sbjct: 112 LS-TLP----ELPASLKHLDVDNNQLT-MLPELPALL---EYINADNNQLTML-PELPTS 161

Query: 703 FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK 762
                      LS+ +N             L F                 ++ +D+S+N 
Sbjct: 162 LE--------VLSVRNN------------QLTFLPEL----------PESLEALDVSTNL 191

Query: 763 LGGKVL-EEIMDLVGL----VALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPS 817
           L  + L    +         +      N +T  I   I  L     + L  N     I  
Sbjct: 192 L--ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 818 SLSRLRLLSVMDLSYNNFSGKIPKGTQLQR 847
           SLS+             FS    +   L R
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 36/230 (15%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
              L Y++   N  +   +PE       L  L++ + Q    +P    +L   + LD+  
Sbjct: 139 PALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTF-LPELPESL---EALDVST 189

Query: 171 NNL--FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIS 228
           N L    +  +       +  +    + +++        + +L     + L      P+S
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN---ILSLDPTCTIILEDN---PLS 243

Query: 229 TPSLLHINYSKSLEVIDLSNNYLT--------------NSIYPWLFNVSSNLVDHI---- 270
           +     ++   +         Y +              +++  W      + V  I    
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAF 303

Query: 271 -DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVF 319
                     +         S R+      Q+    + L   + L++  F
Sbjct: 304 EHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSF 353

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 84.8 bits (209), Expect = 5e-17
 Identities = 55/359 (15%), Positives = 99/359 (27%), Gaps = 30/359 (8%)

Query: 67  RNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSG 126
           R               HV   +   S         G+   +LL +     L + W    G
Sbjct: 233 RWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDG 292

Query: 127 SPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS 186
              P  +      +                 G+ S+ + + L+        +      L 
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 187 SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDL 246
                   +  + K +     L + + L  L              +  ++     +    
Sbjct: 353 RC------ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 247 SNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPK 306
             + L          +            ++      +     A +R L L    L  +  
Sbjct: 407 YFSTLKAVDPMRAAYLDDL--------RSKFLLENSVLKMEYADVRVLHLAHKDLTVLC- 457

Query: 307 FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP 366
            L  +  +  L  S+N LR         +         LE L  + N +   +  +   P
Sbjct: 458 HLEQLLLVTHLDLSHNRLR--------ALPPALAALRCLEVLQASDNALE-NVDGVANLP 508

Query: 367 SLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISE-----ALFSNLSSLDT 419
            LQ L L NNRL      + +    +L LL L GNSL            +  ++SS+ T
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 43/301 (14%), Positives = 92/301 (30%), Gaps = 23/301 (7%)

Query: 145 SSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNW 204
           S+  +   +  +      L  + +       S        + S     L     +  S  
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 205 VQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS 264
            +        ++++L       ++     H                L           S+
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA 346

Query: 265 NLVDH--IDLGSNQLHGSIPLAFGHMASLRHLDLLSN----QLREVPKFLGNMSSLKRLV 318
                   +L   +    +         L+ L+  +      +  + + L  +   K  +
Sbjct: 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 319 FSYNELRG-----------ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPS 367
             ++ L+              S+F+   S    + + +  L+LA  ++T  +  L     
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLL 464

Query: 368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSL 427
           +  L L +NRL   +  ++  L  LE+L  S N+L   +     +NL  L  L L +N L
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRL 520

Query: 428 T 428
            
Sbjct: 521 Q 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 51/318 (16%), Positives = 94/318 (29%), Gaps = 37/318 (11%)

Query: 523 NQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQF 582
            + +    L   +VS      +        + S    LL  +D +   +  R PD   + 
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 583 DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG----LPSFFMNGSQLTLMDL 638
             + + +L   S   ++P     +   GS S     L                QL   +L
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL 356

Query: 639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK 698
                +  + + + ES   L  L   +      I   +  L  +     +L   S +   
Sbjct: 357 SVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 699 CFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDL 758
                  +   +S  L   S                                   +++ L
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADV--------------------------RVLHL 448

Query: 759 SSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS 818
           +   L   VL  +  L+ +  L+LS+N L   + P +  L+ L+ L  S N         
Sbjct: 449 AHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDG 503

Query: 819 LSRLRLLSVMDLSYNNFS 836
           ++ L  L  + L  N   
Sbjct: 504 VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 42/303 (13%), Positives = 82/303 (27%), Gaps = 20/303 (6%)

Query: 402 LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL-- 459
            R ++  A   ++     +   +  L++ FS             L      P   +W   
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSR-PLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 460 -------QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFD 512
                        +     N  +        W  ++      L  +  +    D +    
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 513 SYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
            +    ++S  +       L        L        ++ +  + +  L  L      L 
Sbjct: 351 LFR--CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA--LDPLLYEKETLQ 406

Query: 573 GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQ 632
                        A L+   + F  E          +  L L +  L+  +         
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLL 464

Query: 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNI 692
           +T +DL  N L   +P  +  +L  L VL    N    N+   +  L  +Q L L  N +
Sbjct: 465 VTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRL 520

Query: 693 SGI 695
              
Sbjct: 521 QQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 3e-04
 Identities = 51/390 (13%), Positives = 114/390 (29%), Gaps = 71/390 (18%)

Query: 429 LKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTN 488
           L    +        ++      +   F + L   ++   L +        V     D  N
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 489 QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSG 548
           +  ++ L +         L+ +   +   +  + +       LL                
Sbjct: 295 RPSHVWLCDL----PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 549 SISFLCSI-SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR 607
                 S+  S +L     S   L    P+  +   ++ IL +          +++ +  
Sbjct: 351 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI-ILLMRALDPLLYEKETLQYFS 409

Query: 608 SIGSLSLYNNSLSGGLPSFFMNGSQLTLM--------DLGKNGLSGEIPTWIGESLPNLV 659
           ++ ++     +    L S F+  + +  M         L    L+  +     E L  + 
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVT 466

Query: 660 VLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN 719
            L L  N+    +P  L  L  +++L  S N +                    N+  ++N
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-------------------NVDGVAN 506

Query: 720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGG-KVLEEIMDLVGLV 778
                                         L  ++ + L +N+L     ++ ++    LV
Sbjct: 507 ------------------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 779 ALNLSNNNLTGQITPR---IGQLKSLDFLD 805
            LNL  N+L  +   +      L S+  + 
Sbjct: 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 55/274 (20%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTN 216
              L+     +L   ++    +L     LS ++  +  +  +   +     +    +L  
Sbjct: 15  DPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSLAG----MQFFTNLKE 67

Query: 217 LYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQ 276
           L+L +  +  +S    L       LE + ++ N L N                       
Sbjct: 68  LHLSHNQISDLSPLKDL-----TKLEELSVNRNRLKN----------------------- 99

Query: 277 LHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVS 336
                 L     A L  L L +N+LR+    L ++ +L+ L    N+        ++++ 
Sbjct: 100 ------LNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK--------LKSIV 144

Query: 337 SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLL 396
                 S LE L L  NEIT     L     +  + L   +     ++ +    +L +  
Sbjct: 145 MLG-FLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCV---NEPVKYQPELYITN 199

Query: 397 LSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLK 430
              +     IS    SN  S     +        
Sbjct: 200 TVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 23/167 (13%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS--KLQV 165
           +    +L  L LS N  S       +  L KL EL+++  +        L  +    L  
Sbjct: 59  MQFFTNLKELHLSHNQISD---LSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSR 110

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           L L  N L    + D L +L +L  L + + KL         L  L  L  L L   ++ 
Sbjct: 111 LFLDNNELR---DTDSLIHLKNLEILSIRNNKLKSIVM----LGFLSKLEVLDLHGNEIT 163

Query: 226 PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFN-VSSNLVDHID 271
                    +   K +  IDL+     N    +      +N V   D
Sbjct: 164 NTG-----GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
           L  L  L  L ++ N          I S   LS L L + +        L +L  L++L 
Sbjct: 81  LKDLTKLEELSVNRNRLK---NLNGIPSA-CLSRLFLDNNELRDTDS--LIHLKNLEILS 134

Query: 168 LRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY---CDL 224
           +R N L    ++  L +LS L  LDL   +++        L+ L+ +  + L      + 
Sbjct: 135 IRNNKL---KSIVMLGFLSKLEVLDLHGNEITNTGG----LTRLKKVNWIDLTGQKCVNE 187

Query: 225 PPISTPSLLHINYSKSLEVIDLSNNYLTNS 254
           P    P L   N  K  +   +S  Y++N 
Sbjct: 188 PVKYQPELYITNTVKDPDGRWISPYYISNG 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 47/223 (21%)

Query: 353 NEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFS 412
             I   +    G  +    +L    +T     S  +LS ++      ++++ +       
Sbjct: 7   TPIN-QVFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAG---MQ 60

Query: 413 NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFN---IFLGSCKIGPRFPKWLQSQNQTVALD 469
             ++L  L LS N ++     D +P   L     + +   ++  +    + S   +  L 
Sbjct: 61  FFTNLKELHLSHNQIS-----DLSPLKDLTKLEELSVNRNRL--KNLNGIPSACLSR-LF 112

Query: 470 VSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
           + N  + D        L N L  L++ NN++K  +  L                      
Sbjct: 113 LDNNELRDTDS--LIHLKN-LEILSIRNNKLK-SIVMLGFL------------------- 149

Query: 530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS 572
                 +  L+L  N+ + +   L  +    + ++DL+     
Sbjct: 150 ----SKLEVLDLHGNEIT-NTGGLTRLKK--VNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 47/257 (18%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 471 SNAGISDIVPDWFWDLTNQLYYLNLSNNEMK-----GKLPDLSRKFDSYGPGIDVSSNQF 525
               I+ + PD    L N     NL    +       +L  +           +  ++  
Sbjct: 5   RPTPINQVFPDP--GLAN-AVKQNLGKQSVTDLVSQKELSGVQN--------FNGDNSNI 53

Query: 526 DGPIPL-LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDS 584
                +    N+  L+LS N+ S  +S L  ++   L  L ++ N L           + 
Sbjct: 54  QSLAGMQFFTNLKELHLSHNQIS-DLSPLKDLTK--LEELSVNRNRLK--------NLNG 102

Query: 585 LAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS 644
           +    L+                    L L NN L        ++   L ++ +  N L 
Sbjct: 103 IPSACLSR-------------------LFLDNNELRD--TDSLIHLKNLEILSIRNNKLK 141

Query: 645 GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFT 704
             I   +   L  L VL L  N+   N    L  L  +  +DL+         K      
Sbjct: 142 -SIV--MLGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELY 196

Query: 705 AMTKEKSSNLSIISNYY 721
                K  +   IS YY
Sbjct: 197 ITNTVKDPDGRWISPYY 213

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 13/148 (8%)

Query: 282 PLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTK 341
            +    M SL ++ L +  + ++   +    ++K L  +        +          + 
Sbjct: 37  NITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHAT-NYNPI--------SG 86

Query: 342 NSSLEWLYLAFNEITGT-IPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGN 400
            S+LE L +   ++T   IP+L G  SL +L + ++    +I   I  L K+  + LS N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 401 SLRGVISEALFSNLSSLDTLQLSDNSLT 428
                I       L  L +L +  + + 
Sbjct: 147 GAITDIMP--LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 45/200 (22%)

Query: 158 GNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNL 217
             ++ L  + L   N+    +L  + Y  +++ L + +   + ++     +S L +L  L
Sbjct: 41  AQMNSLTYITLANINV---TDLTGIEYAHNIKDLTINNIHATNYNP----ISGLSNLERL 93

Query: 218 YLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQL 277
            +   D   +++  + +++   SL ++D+S++   +SI                      
Sbjct: 94  RIMGKD---VTSDKIPNLSGLTSLTLLDISHSAHDDSILT-------------------- 130

Query: 278 HGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSS 337
                     +  +  +DL  N        L  +  LK L   ++         + +   
Sbjct: 131 ------KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG--------VHDY-R 175

Query: 338 GSTKNSSLEWLYLAFNEITG 357
           G      L  LY     I G
Sbjct: 176 GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 47/221 (21%)

Query: 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
           S  ++  N  LG      I+   +       SL  I L+N  +T+               
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQM------NSLTYITLANINVTD--------------- 58

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL 328
                   L G       +  +++ L + +         +  +S+L+RL     ++  + 
Sbjct: 59  --------LTG-----IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDK 104

Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGT-IPDLGGFPSLQILSLENNRLTGTISKSIG 387
              +          +SL  L ++ +    + +  +   P +  + L  N     I   + 
Sbjct: 105 IPNLSG-------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK 156

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
            L +L+ L +  + +          +   L+ L     ++ 
Sbjct: 157 TLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
           +  L +L  L +   + +   IP  +  L  L+ L +S +     I  ++  L K+  +D
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 168 LRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY 221
           L +N   +  ++  L  L  L+ L++    +  +      + +   L  LY   
Sbjct: 143 LSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 26/147 (17%), Positives = 61/147 (41%), Gaps = 12/147 (8%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           +  ++  LTY+ L+  N +       I     + +L +++       P  +  LS L+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
            +   ++ +S  +  LS L+SL  LD++          +  ++ L  + ++ L Y     
Sbjct: 94  RIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGA-- 148

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTN 253
           I+    L       L+ +++  + + +
Sbjct: 149 ITDIMPL--KTLPELKSLNIQFDGVHD 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 17/186 (9%)

Query: 116 YLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFS 175
           YL+      S + I E    +  L+ + L++          +     ++ L +   +   
Sbjct: 25  YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA-- 78

Query: 176 SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHI 235
             N + +S LS+L  L +    ++  S+ +  LS L SLT L + +          L  I
Sbjct: 79  -TNYNPISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHS---AHDDSILTKI 132

Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
           N    +  IDLS N     I P        L   +++  + +H    +       L  L 
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPEL-KSLNIQFDGVHDYRGIE--DFPKLNQLY 187

Query: 296 LLSNQL 301
             S  +
Sbjct: 188 AFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 22/162 (13%), Positives = 61/162 (37%), Gaps = 9/162 (5%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593
            +++ + L+    +  ++ +    +  +  L ++N   +    +      +L  L +   
Sbjct: 44  NSLTYITLANINVT-DLTGIEYAHN--IKDLTINNIHATN--YNPISGLSNLERLRIMGK 98

Query: 594 SFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE 653
               +   ++S L S+  L + +++    + +      ++  +DL  NG   +I     +
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--K 156

Query: 654 SLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695
           +LP L  L+++ +  H     +      +  L      I G 
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 32/158 (20%)

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
           +SL ++ LA   +T  +  +    +++ L++ N   T      I  LS LE L + G  +
Sbjct: 44  NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDV 100

Query: 403 RGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ 462
                  L S L+SL  L +S +                                 + + 
Sbjct: 101 TSDKIPNL-SGLTSLTLLDISHS------------------------AHDDSILTKINTL 135

Query: 463 NQTVALDVS-NAGISDIVPDWFWDLTNQLYYLNLSNNE 499
            +  ++D+S N  I+DI+P     L   L  LN+  + 
Sbjct: 136 PKVNSIDLSYNGAITDIMP--LKTLPE-LKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 25/185 (13%), Positives = 64/185 (34%), Gaps = 30/185 (16%)

Query: 653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS 712
             + +L  ++L +     ++   + Y  +I+ L ++  + +   P      + + +    
Sbjct: 41  AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLER---- 92

Query: 713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM 772
            L I+     +  +  +                  S L  + ++D+S +     +L +I 
Sbjct: 93  -LRIMGKDVTSDKIPNL------------------SGLTSLTLLDISHSAHDDSILTKIN 133

Query: 773 DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY 832
            L  + +++LS N     I P +  L  L  L++  +         +     L+ +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG-VHDY-RGIEDFPKLNQLYAFS 190

Query: 833 NNFSG 837
               G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG 813
           K + +++          I  L  L  L +   ++T    P +  L SL  LD+S +    
Sbjct: 69  KDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 814 GIPSSLSRLRLLSVMDLSYNNFSGKI 839
            I + ++ L  ++ +DLSYN     I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 753 IKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF 812
           +  I L++  +    L  I     +  L ++N + T    P I  L +L+ L +      
Sbjct: 46  LTYITLANINV--TDLTGIEYAHNIKDLTINNIHATN-YNP-ISGLSNLERLRIMGKDVT 101

Query: 813 GGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 842
                +LS L  L+++D+S++     I   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 35/190 (18%)

Query: 602 SMSFLRSIGSLSLYNNSLSG--GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLV 659
           + + + S+  ++L N +++   G+         +  + +     +   P      L NL 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYA----HNIKDLTINNIHATNYNPI---SGLSNLE 91

Query: 660 VLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN 719
            L +       +    L  L+ + +LD+S +     I    +    +     S    I++
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVA 779
                     +MPL                L  +K +++  + +       I D   L  
Sbjct: 152 ----------IMPL--------------KTLPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185

Query: 780 LNLSNNNLTG 789
           L   +  + G
Sbjct: 186 LYAFSQTIGG 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 45/246 (18%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP--PISTPSLLHINYSKSLEV 243
            S + LDL+   L    +      +   L  L L  C++          L       L  
Sbjct: 28  FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSL-----SHLST 80

Query: 244 IDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP-LAFGHMASLRHLDLLSNQLR 302
           + L+ N +  S+    F+  S+L   +      L  S+     GH+ +L+ L++  N ++
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSL-QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 303 EVP--KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEITGTI 359
                ++  N+++L+ L  S N+        IQ++     +    +  L L+        
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK--------IQSIYCTDLRVLHQMPLLNLS-------- 181

Query: 360 PDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDT 419
                      L L  N +   I     +  +L+ L L  N L+  + + +F  L+SL  
Sbjct: 182 -----------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQK 228

Query: 420 LQLSDN 425
           + L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 35/217 (16%)

Query: 289 ASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLE 346
            S ++LDL  N LR +      +   L+ L  S  E        IQ +  G+    S L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLS 79

Query: 347 WLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRG 404
            L L  N I  ++      G  SLQ L      L    +  IG L  L+ L ++ N ++ 
Sbjct: 80  TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 405 VISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQ 464
                 FSNL++L+ L LS N +               +I+              Q    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ--------------SIYCTD------LRVLHQMPLL 178

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMK 501
            ++LD+S   ++ I P  F ++  +L  L L  N++K
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 36/217 (16%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
               L  LDLS                       +    +          LS L  L L 
Sbjct: 50  SFPELQVLDLSRCEIQ-----------------TIEDGAYQS--------LSHLSTLILT 84

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIST 229
            N +  S  L   S LSSL+ L   +  L+   N    + +L++L  L + +  +     
Sbjct: 85  GNPI-QSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKL 141

Query: 230 PSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL---VDHIDLGSNQLHGSIPLAFG 286
           P     +   +LE +DLS+N +  SIY     V   +      +DL  N ++  I     
Sbjct: 142 PEYF--SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 287 HMASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
               L+ L L +NQL+ VP      ++SL+++    N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 50/241 (20%), Positives = 86/241 (35%), Gaps = 43/241 (17%)

Query: 141 ELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSK 200
            L LS         +   +  +LQVLDL    +  +        LS L  L L    +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 201 FSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLF 260
            +  +   S L SL  L     +L                             S+  +  
Sbjct: 91  LA--LGAFSGLSSLQKLVAVETNL----------------------------ASLENFPI 120

Query: 261 NVSSNLVDHIDLGSNQLHGSIPL--AFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLV 318
                L   +++  N +  S  L   F ++ +L HLDL SN+++ +     ++  L ++ 
Sbjct: 121 GHLKTL-KELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMP 176

Query: 319 FSYNELRGELSEF-IQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLEN 375
                L  +LS   +  +  G+ K   L+ L L  N++  ++PD       SLQ + L  
Sbjct: 177 LLNLSL--DLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 233

Query: 376 N 376
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 52/236 (22%), Positives = 88/236 (37%), Gaps = 35/236 (14%)

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
             S + L L  N L    S S     +L++L LS   ++  I +  + +LS L TL L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI-VPDWF 483
           N +       ++    L  +      +       +        L+V++  I    +P++F
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 484 WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543
            +LTN L +L+LS+N+++                  +        +  +P    SL+LS 
Sbjct: 146 SNLTN-LEHLDLSSNKIQ-----------------SIYCTDLRV-LHQMPLLNLSLDLSL 186

Query: 544 NKFSGSISFLCSISSHL-----LTYLDLSNNLLSGRLPDCWFQ-FDSLAILNLANN 593
           N        +  I         L  L L  N L   +PD  F    SL  + L  N
Sbjct: 187 NP-------MNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 34/230 (14%)

Query: 611 SLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG 670
           +L L  N L       F +  +L ++DL +  +   I     +SL +L  L L  N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 671 NIP---FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR 727
           ++    F    LS +Q L     N++ +      +   + +     L++  N   +  L 
Sbjct: 90  SLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKE-----LNVAHNLIQSFKLP 142

Query: 728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL---GGKVLEEIMDLVGLVA-LNLS 783
                   F             L  ++ +DLSSNK+       L  +  +  L   L+LS
Sbjct: 143 EY------FSN-----------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 784 NNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN 833
            N +   I P   +   L  L L  N           RL  L  + L  N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 57/389 (14%), Positives = 108/389 (27%), Gaps = 89/389 (22%)

Query: 78  SNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLG 137
           +  +  + G  L+  + +  D     +   LL+   +  + LS N            ++G
Sbjct: 2   ARFS--IEGKSLKLDAITTEDEKS--VFAVLLEDDSVKEIVLSGN------------TIG 45

Query: 138 KLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGN---------LDWLSYLSSL 188
             +   LS           + +   L++ +          +         L  L     L
Sbjct: 46  TEAARWLSEN---------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96

Query: 189 RYLDLADCKLSK--FSNWVQVLSNLRSLTNLYLGYCDLPP----------ISTPSLLHIN 236
             + L+D           +  LS    L +LYL    L P                    
Sbjct: 97  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156

Query: 237 YSKSLEVIDLSNNYLTNSIYPWL---FNVSSNLVDHIDLGSNQLH-----GSIPLAFGHM 288
            +  L  I    N L N         F     L   + +  N +        +     + 
Sbjct: 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 289 ASLRHLDLLSNQL-----REVPKFLGNMSSLKRLVFSYNELRGE----LSEFIQNVSSGS 339
             L+ LDL  N         +   L +  +L+ L  +   L       + +    +    
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE--- 272

Query: 340 TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
             N  L+ L L +NEI           +L    ++              +  L  L L+G
Sbjct: 273 --NIGLQTLRLQYNEIELD-----AVRTL-KTVIDEK------------MPDLLFLELNG 312

Query: 400 NSLR--GVISEALFSNLSSLDTLQLSDNS 426
           N       + + +    S+    +L +  
Sbjct: 313 NRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 50/326 (15%), Positives = 106/326 (32%), Gaps = 64/326 (19%)

Query: 157 LGNLSKLQVLDLRFNNLFSSGNLDWLSYL---SSLRYLDLADCKLSKFSNWV--QVLSNL 211
           +   S ++   L+ + + +       + L    S++ + L+   +   +     + +++ 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 212 RSLTNLYLGYC---DLPPISTPSLLHI----NYSKSLEVIDLSNNYLTN----SIYPWLF 260
           + L            +      +L  +         L  + LS+N         +  +L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL- 118

Query: 261 NVSSNLVDHIDLGSNQL--HGSIPLA-----------FGHMASLRHLDLLSNQLREVP-- 305
           +  + L  H+ L +N L       +A             +   LR +    N+L      
Sbjct: 119 SKHTPLE-HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 306 ---KFLGNMSSLKRLVFSYNELRGE-----LSEFIQNVSSGSTKNSSLEWLYLAFNEIT- 356
              K   +   L  +    N +R E     L E +            L+ L L  N  T 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-------CQELKVLDLQDNTFTH 230

Query: 357 -GTI---PDLGGFPSLQILSLENNRLTGT----ISKSIGQLS--KLELLLLSGNSLRG-- 404
            G+      L  +P+L+ L L +  L+      +  +  +L    L+ L L  N +    
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 405 --VISEALFSNLSSLDTLQLSDNSLT 428
              +   +   +  L  L+L+ N  +
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 56/367 (15%), Positives = 115/367 (31%), Gaps = 94/367 (25%)

Query: 342 NSSLEWLYLAFNEITGT-----IPDLGGFPSLQILSLENNRLTGT----ISKSIGQLSKL 392
             S+E   L  + IT          L    S++ + L  N +       +S++I     L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 393 ELLLLSGNSLR----------GVISEALFSNLSSLDTLQLSDNSLTLK----FSHDWTPP 438
           E+   S                ++ +AL      L T++LSDN+             +  
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 439 FQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNN 498
             L +++L +  +GP+    +               + ++  +        L  +    N
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIAR------------ALQELAVNKKAKNAPPLRSIICGRN 169

Query: 499 EMKGK-LPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFS--GSISFLCS 555
            ++   + + ++ F S                      + ++ + +N     G    L  
Sbjct: 170 RLENGSMKEWAKTFQS-------------------HRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 556 ISSHL--LTYLDLSNNLLSGR--------LPDCWFQFDSLAILNLANNSFFGEIPDSMSF 605
             ++   L  LDL +N  +          L        +L  L L +             
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSW----PNLRELGLNDCL----------- 255

Query: 606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGE----IPTWIGESLPNLVVL 661
           L + G+      ++        +    L  + L  N +  +    + T I E +P+L+ L
Sbjct: 256 LSARGAA-----AVVDAFSK--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 662 SLRSNKF 668
            L  N+F
Sbjct: 309 ELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 36/218 (16%), Positives = 62/218 (28%), Gaps = 37/218 (16%)

Query: 534 PNVSSLNLSKNKFSGS-ISFLCSI--SSHLLTYLDLSNN--------LLSGRLPDCWFQF 582
           P + ++ LS N F  +    L         L +L L NN         ++  L +     
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 583 D-----SLAILNLANNSFFGE----IPDSMSFLRSIGSLSLYNNSL-----SGGLPSFFM 628
                  L  +    N            +    R + ++ +  N +        L     
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 629 NGSQLTLMDLGKNGLSGEIPTWIGESL---PNLVVLSLRSNKF--HGNIPF----QLCYL 679
              +L ++DL  N  +    + +  +L   PNL  L L        G             
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 680 SHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717
             +Q L L  N I             +  EK  +L  +
Sbjct: 274 IGLQTLRLQYNEIE---LDAVRTLKTVIDEKMPDLLFL 308

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 54/267 (20%)

Query: 607 RSIGSLSLYNNSLSG----GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESL---PNLV 659
            SI   SL  ++++      + +  +    +  + L  N +  E   W+ E++    +L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 660 VLSLRSNKFHGNIPFQ-----------LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
           +       F G +  +           L     +  + LS N      P           
Sbjct: 64  IAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLS 119

Query: 709 EKSS--NLSIISNYYYNLGLRG------MLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
           + +   +L + +N    LG +        L  L      K            ++ I    
Sbjct: 120 KHTPLEHLYLHNN---GLGPQAGAKIARALQELAVNKKAKNAPP--------LRSIICGR 168

Query: 761 NKL---GGKVL-EEIMDLVGLVALNLSNNNLTGQ-ITPRIGQL----KSLDFLDLSRNHF 811
           N+L     K   +       L  + +  N +  + I   + +     + L  LDL  N F
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 812 ----FGGIPSSLSRLRLLSVMDLSYNN 834
                  +  +L     L  + L+   
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 51/345 (14%), Positives = 106/345 (30%), Gaps = 78/345 (22%)

Query: 536 VSSLNLSKNKFSGS-ISFLCSI--SSHLLTYLDLSNN--------LLSGRLPDCWFQFDS 584
           +   +L  +  +      + ++      +  + LS N         LS  +         
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK----KD 61

Query: 585 LAILNLANNS---FFGEIPDSMSFL-------RSIGSLSLYNNSLSG----GLPSFFMNG 630
           L I   ++        EIP+++  L         + ++ L +N+        L  F    
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
           + L  + L  NGL  +    I  +L  L V     N               ++ +    N
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA------------PPLRSIICGRN 169

Query: 691 NISGI----IPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEY 746
            +         K F +   +       + ++ N     G+  +L+  + +          
Sbjct: 170 RLENGSMKEWAKTFQSHRLLH-----TVKMVQNGIRPEGIEHLLLEGLAYCQ-------- 216

Query: 747 KSILGLIKIIDLSSNKL---GGKVL-EEIMDLVGLVALNLSNNNLTGQITPRIGQL---- 798
                 +K++DL  N     G   L   +     L  L L++  L+ +    +       
Sbjct: 217 -----ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 799 --KSLDFLDLSRNHF----FGGIPSSL-SRLRLLSVMDLSYNNFS 836
               L  L L  N         + + +  ++  L  ++L+ N FS
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 19/228 (8%)

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
           R+   L      L  I   +         LE I++S N +   I   +F+    L +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGF---GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFL-GNMSSLKRLVFSYNELRGELSE 330
             +N L    P AF ++ +L++L + +  ++ +P     +      L    N        
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-------I 139

Query: 331 FIQNVSSGSTKN--SSLEWLYLAFNEITGTIPDLGGFPSLQILSL---ENNRLTGTISKS 385
            I  +   S          L+L  N I   I +   F   Q+  L   +NN L    +  
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 386 IGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSH 433
               S   +L +S   +   +      NL  L      +         
Sbjct: 198 FHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 46/268 (17%), Positives = 83/268 (30%), Gaps = 44/268 (16%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIP-HQLGNLSKLQVLDLRFN 171
           +   L              F G  G L ++ +S       I      NL KL  + +   
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSG-FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 172 NLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIST-P 230
           N     N +    L +L+YL +++  +    +    +  + SL  + L   D   I T  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINIHTIE 145

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
               +  S    ++ L+ N +   I+   FN  + L +     +N L       F   + 
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 291 LRHLDLLSNQLREVPKF-LGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
              LD+   ++  +P + L N+  L+    S   L+                        
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRAR--STYNLK------------------------ 237

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNR 377
                    +P L    +L   SL    
Sbjct: 238 --------KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 36/215 (16%), Positives = 73/215 (33%), Gaps = 14/215 (6%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSA-QFAGPIPHQLGNLSKLQVLDLR 169
              L  +++S N+       +   +L KL E+ +  A       P    NL  LQ L + 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 170 FNNLFSSGNLDWLSYLSSLRYLDLAD-CKLSKFSNWVQVLSNLRS-LTNLYLGYCDLPPI 227
              +    ++    +      LD+ D   +            L      L+L    +  I
Sbjct: 113 NTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQEI 169

Query: 228 STPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGH 287
              +    N ++  E+    NN L   +   +F+ +S     +D+   ++H        +
Sbjct: 170 HNSAF---NGTQLDELNLSDNNNLE-ELPNDVFHGASGP-VILDISRTRIHSLPSYGLEN 224

Query: 288 MASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYN 322
           +  LR        L+++P     + +L     +Y 
Sbjct: 225 LKKLRARST--YNLKKLPTL-EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 48/262 (18%), Positives = 78/262 (29%), Gaps = 48/262 (18%)

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
             +   L     +L      +      LE + +S N +  VI   +FSNL  L  +++  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFW 484
            +              L  I   + +  P     LQ       L +SN GI  +      
Sbjct: 89  AN-------------NLLYINPEAFQNLPN----LQY------LLISNTGIKHLPDVHKI 125

Query: 485 DLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKN 544
               Q   L++ +N     +                  N F G    L      L L+KN
Sbjct: 126 HSL-QKVLLDIQDNINIHTIER----------------NSFVG----LSFESVILWLNKN 164

Query: 545 KFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMS 604
                I       + L       NN L     D +       IL+++           + 
Sbjct: 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 605 FLRSIGSLSLYNNSLSGGLPSF 626
            L+ + + S YN      LP+ 
Sbjct: 224 NLKKLRARSTYNLKK---LPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 45/266 (16%), Positives = 73/266 (27%), Gaps = 49/266 (18%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISS------HLLTYLDLSNNLLSGRLPDCWFQF-DS 584
           LP N   L     K          I          L  +++S N +   +    F     
Sbjct: 28  LPRNAIELRFVLTKLR-------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 585 LAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL 643
           L  + +   +    I       L ++  L + N  +        ++  Q  L+D+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 644 SGEIPTWIGESLP-NLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSLNNISGIIPKC 699
              I       L    V+L L  N     I    F        ++     NN+  +    
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG--TQLDELNLSDNNNLEELPNDV 197

Query: 700 FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLS 759
           FH  +       S   I S           L                     L K+   S
Sbjct: 198 FHGASGPVILDISRTRIHS-----------LPSYGL--------------ENLKKLRARS 232

Query: 760 SNKLGGKVLEEIMDLVGLVALNLSNN 785
           +  L  K L  +  LV L+  +L+  
Sbjct: 233 TYNL--KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 13/160 (8%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPE--FIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQ 164
             +       LD+  N    + I    F+G   +   L L+       I +   N ++L 
Sbjct: 123 HKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLD 180

Query: 165 VLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDL 224
            L+L  NN       D     S    LD++  ++    ++   L NL+ L         L
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYN--L 236

Query: 225 PPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSS 264
             + T   L      +L    L+      +   W   +S 
Sbjct: 237 KKLPTLEKLV-----ALMEASLTYPSHCCAFANWRRQISE 271

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 34/220 (15%), Positives = 64/220 (29%), Gaps = 39/220 (17%)

Query: 633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLS- 688
              +      L   I         +L  + +  N     I    F    L  +  + +  
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEK 88

Query: 689 LNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKS 748
            NN+  I P+ F N   +       L I +      G++  L  +               
Sbjct: 89  ANNLLYINPEAFQNLPNLQY-----LLISNT-----GIK-HLPDVHKIH----------- 126

Query: 749 ILGLIKIIDLSSN----KLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFL 804
                 ++D+  N     +       +      V L L+ N +  +I         LD L
Sbjct: 127 -SLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 805 DLSRNHFFGGIPS-SLSRLRLLSVMDLSYNNFSGKIPKGT 843
           +LS N+    +P+          ++D+S       +P   
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP-LAFGHMASLRHLDL 296
                ++DLS+N L+     W     +NL   + L  N L+  I   AF  + +LR+LDL
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLH-SLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 297 LSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNE 354
            SN L  + +    ++ +L+ L+   N         I  V   + ++ + L+ LYL+ N+
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNH--------IVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 355 IT----GTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLEL--LLLSGNSLR 403
           I+      I D    P L +L L +N+L       + +L       L L  N L 
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 9/169 (5%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
           +   LDLS NN S          L  L  L LS              +  L+ LDL  N+
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 173 LFSSGNLDW--LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
           L +   LD    S L +L  L L +  +           ++  L  LYL    +      
Sbjct: 100 LHT---LDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH-IDLGSNQLH 278
            +   N    L ++DLS+N L   +           V + + L +N L 
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
           S    LDL+   LS+        + L +L +L L +  L  IS+ + + +    +L  +D
Sbjct: 39  SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLD 94

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMASLRHLDLLSNQLREV 304
           LS+N+L  ++  +LF+    L + + L +N +   +   AF  MA L+ L L  NQ+   
Sbjct: 95  LSSNHLH-TLDEFLFSDLQAL-EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 305 P----KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFN 353
           P    K    +  L  L  S N+L+      +               LYL  N
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK-----KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 47/214 (21%), Positives = 74/214 (34%), Gaps = 38/214 (17%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN--SSLEW 347
           +   L     QL  VP+ L   S    L  S+N         +  + +  T    ++L  
Sbjct: 19  ASNILSCSKQQLPNVPQSLP--SYTALLDLSHN--------NLSRLRAEWTPTRLTNLHS 68

Query: 348 LYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGV 405
           L L+ N +   I        P+L+ L L +N L          L  LE+LLL  N +  V
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-V 126

Query: 406 ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQT 465
           +    F +++ L  L LS N ++        P      +     K+       L      
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS------RFPV----ELIKDGNKL-----PKLML---- 167

Query: 466 VALDVSNAGISDIVPDWFWDLTN-QLYYLNLSNN 498
             LD+S+  +  +       L       L L NN
Sbjct: 168 --LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQ-FDSLAILNLANNSFFGEIPDSM-SFLRSIGSLSLYNNS 618
              LDLS+N LS    +       +L  L L++N     I       + ++  L L +N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH 99

Query: 619 LSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQ--- 675
           L       F +   L ++ L  N +   +     E +  L  L L  N+     P +   
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 676 -LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709
               L  + +LDLS N +  +         A  K 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 9e-08
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
            + +L YLDLS N+        F   L  L  L L +        +   ++++LQ L L 
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 170 FNNL--FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
            N +  F    +   + L  L  LDL+  KL K       L  L +     L
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 584 SLAILNLANNSFFGEIPDSMSF--LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN 641
             A+L+L++N+    +    +   L ++ SL L +N L+      F+    L  +DL  N
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH 701
            L   +  ++   L  L VL L +N            ++ +Q L LS N IS    +   
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 702 NFTAMTKEKSSNLS 715
           +   + K    +LS
Sbjct: 158 DGNKLPKLMLLDLS 171

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 44/240 (18%), Positives = 72/240 (30%), Gaps = 91/240 (37%)

Query: 392 LELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI 451
             LL LS N+L  + +E   + L++L +L LS N                          
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH------------------------- 75

Query: 452 GPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKF 511
                                  ++ I  + F  + N L YL+LS+N +           
Sbjct: 76  -----------------------LNFISSEAFVPVPN-LRYLDLSSNHLH---------- 101

Query: 512 DSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL------LTYLD 565
                   +    F          +  L L  N        +  +  +       L  L 
Sbjct: 102 -------TLDEFLFSD-----LQALEVLLLYNNH-------IVVVDRNAFEDMAQLQKLY 142

Query: 566 LSNNLLSGRLP----DCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIG--SLSLYNNSL 619
           LS N +S R P        +   L +L+L++N         +  L +     L L+NN L
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 42/185 (22%)

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
           T  LD+S+  +S +  +W       L+ L LS+N +                   +SS  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-----------------FISSEA 83

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL------LTYLDLSNNLLSGRLPDC 578
           F     +  PN+  L+LS N        L ++   L      L  L L NN +   +   
Sbjct: 84  FVP---V--PNLRYLDLSSNH-------LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRN 130

Query: 579 WFQF-DSLAILNLANNSFFGEIP----DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQL 633
            F+    L  L L+ N      P       + L  +  L L +N L     +        
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189

Query: 634 TLMDL 638
               L
Sbjct: 190 VKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 40/180 (22%)

Query: 671 NIPFQLCYLSHIQILDLSLNNISGIIPKC-FHNFTAMTKEKSSNLSIISNYYYNLGLRGM 729
           ++P      S+  +LDLS NN+S +  +      T +     S+  +             
Sbjct: 36  SLP------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----------- 78

Query: 730 LMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM--DLVGLVALNLSNNNL 787
           +    F              +  ++ +DLSSN L    L+E +  DL  L  L L NN++
Sbjct: 79  ISSEAFVP------------VPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHI 124

Query: 788 TGQITPRI-GQLKSLDFLDLSRNHFF---GGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT 843
              +       +  L  L LS+N        +    ++L  L ++DLS N    K+P   
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 63/363 (17%), Positives = 115/363 (31%), Gaps = 69/363 (19%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
                 +T LDLS NN            L  +S + L  A             + +  L+
Sbjct: 18  TSIPHGVTSLDLSLNN------------LYSISTVELIQA--------FANTPASVTSLN 57

Query: 168 LRFNNLFSSGNLDWLSYL----SSLRYLDLADCKLSKFSNWVQVLSNL-----RSLTNLY 218
           L  N+L    + + +  L    +++  L+L+   LS  S     L         ++T L 
Sbjct: 58  LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS--SDELVKTLAAIPFTITVLD 115

Query: 219 LGYCDLPPISTPSLLH--INYSKSLEVIDLSNNYLTN----SIYPWLFNVSSNLVDHIDL 272
           LG+ D    S+        N   S+  ++L  N L       +   L  + +N+   ++L
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN-SLNL 174

Query: 273 GSNQLH--GSIPLAFG---HMASLRHLDLLSNQLREV------PKFLGNMSSLKRLVFSY 321
             N L       LA       AS+  LDL +N L           F    + +  L    
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 322 NELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD--------LGGFPSLQILSL 373
           N L       ++N+         L+ +YL ++ +     +              + ++  
Sbjct: 235 NCLH---GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 374 ENNRLTGTISKSIGQL-----SKLELLLLSGNSL----RGVISEALFSNLSSLDTLQLSD 424
               +  + S  I  L      K ++  L    L    +   +    +    L     + 
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

Query: 425 NSL 427
             L
Sbjct: 352 KPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 48/262 (18%), Positives = 84/262 (32%), Gaps = 50/262 (19%)

Query: 206 QVLSNLRSLTNLYLGYCDLPPISTPSLLHI--NYSKSLEVIDLSNNYLTN----SIYPWL 259
           +  S    +T+L L   +L  IST  L+    N   S+  ++LS N L       +   L
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 260 FNVSSNLVDHIDLGSNQLHGSIPLAFGHM-----ASLRHLDLLSNQLREV-PKFLGNM-- 311
             + +N+   ++L  N L                 ++  LDL  N               
Sbjct: 76  AAIPANVT-SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 312 ---SSLKRLVFSYNELRGE----LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGG 364
              +S+  L    N+L  +    L + +  +       +++  L L  N +         
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAI------PANVNSLNLRGNNLA----SKNC 184

Query: 365 F----------PSLQILSLENNRLTGTISKSIGQL-----SKLELLLLSGNSLRGVISEA 409
                       S+  L L  N L       +  +     + +  L L  N L G   E 
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244

Query: 410 L---FSNLSSLDTLQLSDNSLT 428
           L     +L  L T+ L  + + 
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 67/362 (18%), Positives = 119/362 (32%), Gaps = 72/362 (19%)

Query: 382 ISKSIGQLSKLELLLLSGNSL--RGV--ISEALFSNLSSLDTLQLSDNSLTLK-----FS 432
           + +       +  L LS N+L       + +A  +  +S+ +L LS NSL  K       
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 433 HDWTPPFQLFNIFLGSCKIGPR----FPKWLQSQNQTV-ALDVSNAGISD----IVPDWF 483
                P  + ++ L    +  +      K L +   T+  LD+     S          F
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 484 WDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK 543
            +L   +  LNL  N++                    SS++    +  +P NV+SLNL  
Sbjct: 134 SNLPASITSLNLRGNDLG-----------------IKSSDELIQILAAIPANVNSLNLRG 176

Query: 544 NKFSGS-----ISFLCSISSHLLTYLDLSNN--------LLSGRLPDCWFQFDSLAILNL 590
           N  +         FL SI +  +T LDLS N         L+          + +  LNL
Sbjct: 177 NNLASKNCAELAKFLASIPAS-VTSLDLSANLLGLKSYAELAYIFSSIP---NHVVSLNL 232

Query: 591 ANNSFFGE----IPDSMSFLRSIGSLSLYNNSLSG-------GLPSFFMNGSQLTLMDLG 639
             N   G     +      L+ + ++ L  + +          L + F N  ++ L+D  
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 640 KNGLSGEIPTWIGESL----PNLVVLSLRSN-----KFHGNIPFQLCYLSHIQILDLSLN 690
              +       I   +        V SL +      + H      L     ++    +  
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

Query: 691 NI 692
            +
Sbjct: 353 PL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 54/314 (17%), Positives = 105/314 (33%), Gaps = 73/314 (23%)

Query: 533 PPNVSSLNLSKNKFSGS-ISFLCSI---SSHLLTYLDLSNNLLSGR--------LPDCWF 580
           P  V+SL+LS N         L      +   +T L+LS N L  +        L     
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI-- 78

Query: 581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640
              ++  LNL+ N               +   S   + L   L +       +T++DLG 
Sbjct: 79  -PANVTSLNLSGNF--------------LSYKSS--DELVKTLAA---IPFTITVLDLGW 118

Query: 641 NGLSGEIPTWIGESL----PNLVVLSLRSNKFHGNIPFQLCYL-----SHIQILDLSLNN 691
           N  S +  +   ++      ++  L+LR N        +L  +     +++  L+L  NN
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGM--LMPLIFFDTWKGGQYEYKSI 749
           ++    K             ++++ +      LGL+    L  +              SI
Sbjct: 179 LA---SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF------------SSI 223

Query: 750 LGLIKIIDLSSNKLGGKVLEEIMDLVG----LVALNLSNNNLTGQITPR--------IGQ 797
              +  ++L  N L G  LE +  L      L  + L  + +   ++             
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPN 282

Query: 798 LKSLDFLDLSRNHF 811
           ++ +  +D +    
Sbjct: 283 IQKIILVDKNGKEI 296

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.8 bits (188), Expect = 2e-14
 Identities = 114/704 (16%), Positives = 201/704 (28%), Gaps = 205/704 (29%)

Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
             Y D+  +         +  + +  D+ +  +  SI      +S   +DHI +  + + 
Sbjct: 16  YQYKDILSVFED-----AFVDNFDCKDVQD--MPKSI------LSKEEIDHIIMSKDAVS 62

Query: 279 GSIPLAFGHMASLRHLD-LLSNQLREVPKFLGN---------MSSLK-------RLVFSY 321
           G+          LR    LLS Q   V KF+           MS +K        +   Y
Sbjct: 63  GT----------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 322 NELRGEL----SEFIQ-NVSSGSTKNSSLEWLYLAFNEITGTIPDLGGF--PSLQILSLE 374
            E R  L      F + NVS         + L          I  + G     + +    
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 375 NNRLTGTISK-----SIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL 429
           + ++   +       ++   +  E +L     L   I     S       ++L  +S+  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 430 KFSH--------------D--WTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA 473
           +                         + +N F  SCKI       L ++ + V   +S A
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKI------LLTTRFKQVTDFLSAA 284

Query: 474 GISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLP 533
             + I                  ++      PD  +          +     D     LP
Sbjct: 285 TTTHIS----------------LDHHSMTLTPDEVK---------SLLLKYLDCRPQDLP 319

Query: 534 PNVSSLN-LSKNKFSGSIS-FLCSI-------SSHLLTYLDLS-NNLLSGRLPDCWFQFD 583
             V + N    +  + SI   L +           L T ++ S N L           FD
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FD 376

Query: 584 SLAILNLANNSFFGE---IPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK 640
            L++        F     IP           LSL    +        +N      + + K
Sbjct: 377 RLSV--------FPPSAHIP--------TILLSLIWFDVIKSDVMVVVNKLHKYSL-VEK 419

Query: 641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCF 700
                 I      S+P++        K      + L    H  I+D   N     IPK F
Sbjct: 420 QPKESTI------SIPSI----YLELKVKLENEYAL----HRSIVD-HYN-----IPKTF 459

Query: 701 HNFTAMTKEKSSNLSIISNYYYN-LG--LRGM-------LMPLIFFDTWKGGQYEYKSIL 750
            +   +          +  Y+Y+ +G  L+ +       L  ++F D             
Sbjct: 460 DSDDLIPPY-------LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD------------F 500

Query: 751 GLI--KII-DLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL--DFLD 805
             +  KI  D ++    G +L  +  L                I     + + L    LD
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQL----------KFYKPYICDNDPKYERLVNAILD 550

Query: 806 LSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKI--PKGTQLQR 847
                F   I  +L   +   ++ ++       I      Q+QR
Sbjct: 551 -----FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 2e-10
 Identities = 77/533 (14%), Positives = 161/533 (30%), Gaps = 136/533 (25%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPE-FIGSLGKLSEL--ALSSAQFAGPIP-HQLG 158
              PS++   ++   D  +N+       +  +  L    +L  AL   + A  +    + 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 159 NLSKLQVL------DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR 212
              K   +        +         + WL+         L +C   +      VL  L+
Sbjct: 160 GSGK-TWVALDVCLSYKVQCKM-DFKIFWLN---------LKNCNSPE-----TVLEMLQ 203

Query: 213 SL-TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPW----LFNV-SSNL 266
            L   +   +      S+   L I+      +       L +  Y      L NV ++  
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 267 VDHIDLGSNQL----HGSI-----PLAFGHMASLRHLDLLS-NQLREV-PKFLG-NMSSL 314
            +  +L    L       +          H++   H   L+ ++++ +  K+L      L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 315 KRLVFSYNELR-GELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI--------P----- 360
            R V + N  R   ++E I++        +   W ++  +++T  I        P     
Sbjct: 319 PREVLTTNPRRLSIIAESIRD-----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 361 ---DLGGFP-----SLQILS-LENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF 411
               L  FP        +LS +  + +   +   + +L K  L+                
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------- 425

Query: 412 SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALD-- 469
               S+ ++ L    L +K  ++    + L    +    I   F            LD  
Sbjct: 426 ---ISIPSIYL---ELKVKLENE----YALHRSIVDHYNIPKTFDSDDLIPPY---LDQY 472

Query: 470 -----------VSNAGISDIVPDWFWD---LTNQLYYLNLSNNEMKGKLPDLSRKFDSYG 515
                      + +     +    F D   L  ++ + + + N     L  L +    Y 
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYK 531

Query: 516 PGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLT--YLDL 566
           P I  +  +++  +  +                 + FL  I  +L+   Y DL
Sbjct: 532 PYICDNDPKYERLVNAI-----------------LDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 5e-07
 Identities = 51/333 (15%), Positives = 99/333 (29%), Gaps = 94/333 (28%)

Query: 4   KCFLLL--QYVSLISVILFQLEPRVANSNNIISCLDEEKESLLAFKQGLIDESGILSSWG 61
            C +LL  ++  +   +       ++  ++ ++   +E +SLL                 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---------------- 308

Query: 62  REDEKRNCCKWRGVRCSN-----KTGHVLGLDLRASS--DSP----------VDALKGTI 104
                    K+   R  +      T +   L + A S  D             D L   I
Sbjct: 309 ---------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 105 NPSLLKL-----QHLTYLDLS----------------WNNFSGSPIPEFIGSLGKLSELA 143
             SL  L     + + +  LS                W +   S +   +  L K S + 
Sbjct: 360 ESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 144 LSSAQFAGPIPH-------QLGNLSKL--------QVLDLRFNNLFSSGNLD--WLSYLS 186
               +    IP        +L N   L         +     ++      LD  + S++ 
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 187 S-LRYLDLADCKLSKFSNWVQVLSNLRSLTN--LYLGYCDLPPISTPSLLH--INYSKSL 241
             L+ ++  + +++ F        + R L     +         S  + L     Y   +
Sbjct: 479 HHLKNIEHPE-RMTLFRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 242 EVIDLSNNYLTNSIYPWLFNVSSNLV--DHIDL 272
              D     L N+I  +L  +  NL+   + DL
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-05
 Identities = 78/559 (13%), Positives = 153/559 (27%), Gaps = 169/559 (30%)

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
           +  + ++S+    ++     +   D                LF   L             
Sbjct: 40  DMPKSILSKEEIDHI-----IMSKDAVSGTLR---------LFWTLL------------- 72

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519
             Q + V   V       +  ++ + L + +        E +      S     Y   I+
Sbjct: 73  SKQEEMVQKFVEEV----LRINYKF-LMSPIKT------EQRQP----SMMTRMY---IE 114

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLL------SG 573
                ++        NVS L                +   LL  L  + N+L      SG
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLK-----------LRQALLE-LRPAKNVLIDGVLGSG 162

Query: 574 RLPDCWFQFDSLAILNLANNSFFGEIPD-----SMSFLRSIGSLSLYNNSLSGGL-PSFF 627
           +          +A+    +     ++       ++    S  ++      L   + P++ 
Sbjct: 163 K--------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 628 MNGSQLTLMDLGKNGLSGEIPT-WIGESLPN-LVVLSLRSNKFHGNIPFQL-CYLSHIQI 684
                 + + L  + +  E+      +   N L+VL    N    N  F L C     +I
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSC-----KI 268

Query: 685 L----DLSL-NNISGIIPKCF---HNFTAMTKEKSSNLSIISNYYYNLGLR-GML----- 730
           L       + + +S          H+   +T ++    S++  Y   L  R   L     
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKY---LDCRPQDLPREVL 323

Query: 731 --MPLI----------FFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLV 778
              P               TW    +++ +   L  II+ S N L      ++ D   L 
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LS 379

Query: 779 ALNLSNNNLTGQITPRIGQLKSL----------DFLDLSRNHFFGGIPSSL----SRLRL 824
               S +     I   +  L  +            ++            SL     +   
Sbjct: 380 VFPPSAH-----IPTIL--LSLIWFDVIKSDVMVVVNKLHK-------YSLVEKQPKEST 425

Query: 825 LSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAYY 884
           +S+  + Y     K+     L R     Y             K  D +    P   D Y+
Sbjct: 426 ISIPSI-YLELKVKLENEYALHRSIVDHYN----------IPKTFDSDD-LIPPYLDQYF 473

Query: 885 TPDDDGDQFITLGFYMSMI 903
                   +  +G ++  I
Sbjct: 474 --------YSHIGHHLKNI 484

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 46/261 (17%), Positives = 75/261 (28%), Gaps = 65/261 (24%)

Query: 343 SSLEWLYLAFNEITGTIPD--LGGFPSLQILSL-ENNRLTGTISKSIGQLSKLELLLLSG 399
            S + L L    +  TIP       P++  + +  +  L    S S   LSK+  + +  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWL 459
                 I       L  L  L + +  L                         P   K  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK---------------------MF-PDLTKVY 127

Query: 460 QSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGID 519
            +    +     N  ++ I  + F  L N+   L L NN                     
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-----------------S 170

Query: 520 VSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSH-------LLTYLDLSNNLLS 572
           V    F+G        + ++ L+KNK      +L  I            + LD+S   ++
Sbjct: 171 VQGYAFNG------TKLDAVYLNKNK------YLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 573 GRLPDCWFQFDSLAILNLANN 593
             LP      + L  L   N 
Sbjct: 219 -ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 13/213 (6%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIP-HQLGNLSKLQVLDLRFNN 172
              L L   +    P   F   L  +S + +S       +  H   NLSK+  +++R   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIST-PS 231
             +  + D L  L  L++L + +  L  F + +  + +      L +   D P +++ P 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEI--TDNPYMTSIPV 148

Query: 232 LLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP-LAFGHMAS 290
                       + L NN  T S+  + FN +   +D + L  N+    I   AFG + S
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK--LDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 291 -LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYN 322
               LD+    +  +P     +  LK L+    
Sbjct: 206 GPSLLDVSQTSVTALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 185 LSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVI 244
             S + L L +  L    +     SNL +++ +Y+       +             +  I
Sbjct: 30  PPSTQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDV--TLQQLESHSFYNLSKVTHI 85

Query: 245 DLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP--LAFGHMASLRHLDLLSN-QL 301
           ++ N      I P        L   + + +  L    P             L++  N  +
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLK-FLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 302 REVPK--FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI 359
             +P   F G  +    L    N           +V   +   + L+ +YL  N+    I
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNG--------FTSVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 360 PD---LGGFPSLQILSLENNRLTGTISKSIGQLSKLELL 395
                 G +    +L +    +T   SK +  L +L   
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 9/180 (5%)

Query: 529 IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQ-FDSLAI 587
           IP LPP+  +L L +     +I      +   ++ + +S ++   +L    F     +  
Sbjct: 26  IPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 588 LNLANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLP--SFFMNGSQLTLMDLGKNGLS 644
           + + N      I       L  +  L ++N  L    P  +   +     ++++  N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 645 GEIPTWIGESLPN-LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN-ISGIIPKCFHN 702
             IP    + L N  + L L +N F  ++       + +  + L+ N  ++ I    F  
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 64/244 (26%)

Query: 604 SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSL 663
           S   S  +L L    L       F N   ++ + +  +    ++ +    +L  +  + +
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 664 RSNKFHGNIP---FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720
           R+ +    I     +   L  ++ L +    +          F  +TK  S+++  I   
Sbjct: 88  RNTRNLTYIDPDALK--ELPLLKFLGIFNTGLK--------MFPDLTKVYSTDIFFILEI 137

Query: 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVAL 780
             N                               +  +  N   G   E        + L
Sbjct: 138 TDNP-----------------------------YMTSIPVNAFQGLCNE-------TLTL 161

Query: 781 NLSNNNLTGQITPRIGQLKSLDFLDLSRN--------HFFGGIPSSLSRLRLLSVMDLSY 832
            L NN  T  +         LD + L++N          FGG+ S  S L      D+S 
Sbjct: 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL------DVSQ 214

Query: 833 NNFS 836
            + +
Sbjct: 215 TSVT 218

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 24/164 (14%)

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELS 329
           DL S  L       F  +  L  L+L  NQL+ +      +++ L  L  + N+L     
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL----- 95

Query: 330 EFIQNVSSGS-TKNSSLEWLYLAFNEITGTIPDLGGFPS---LQILSLENNRLT----GT 381
               ++  G     + L+ LYL  N++  ++P  G F     L+ L L  N+L     G 
Sbjct: 96  ---ASLPLGVFDHLTQLDKLYLGGNQLK-SLPS-GVFDRLTKLKELRLNTNQLQSIPAGA 150

Query: 382 ISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
             K    L+ L+ L LS N L+ V   A F  L  L T+ L  N
Sbjct: 151 FDK----LTNLQTLSLSTNQLQSVPHGA-FDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 51/189 (26%), Positives = 69/189 (36%), Gaps = 39/189 (20%)

Query: 115 TYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLF 174
             LDL     +      F G L KL+ L L   Q          +L++L  L L  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 175 S--SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
           S   G  D   +L+ L  L L   +L    + V        LT L               
Sbjct: 97  SLPLGVFD---HLTQLDKLYLGGNQLKSLPSGV-----FDRLTKL--------------- 133

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMASL 291
                 K L    L+ N L  SI    F+  +NL   + L +NQL  S+P  AF  +  L
Sbjct: 134 ------KEL---RLNTNQLQ-SIPAGAFDKLTNL-QTLSLSTNQLQ-SVPHGAFDRLGKL 181

Query: 292 RHLDLLSNQ 300
           + + L  NQ
Sbjct: 182 QTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 7/149 (4%)

Query: 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSG 621
             LDL +  L+      +     L  LNL  N            L  +G+L L NN L+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 622 GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP---FQLCY 678
                F + +QL  + LG N L   +P+ + + L  L  L L +N+   +IP   F    
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD--K 153

Query: 679 LSHIQILDLSLNNISGIIPKCFHNFTAMT 707
           L+++Q L LS N +  +    F     + 
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 315 KRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGF---PSLQIL 371
           ++L      L    +        G TK   L WL L +N++  T+   G F     L  L
Sbjct: 38  EKLDLQSTGL----ATLSDATFRGLTK---LTWLNLDYNQLQ-TLSA-GVFDDLTELGTL 88

Query: 372 SLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
            L NN+L          L++L+ L L GN L+  +   +F  L+ L  L+L+ N L 
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 289 ASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLE 346
            ++  + L  N ++ +P         L+R+  S N++          ++  +     SL 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--------SELAPDAFQGLRSLN 83

Query: 347 WLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRG 404
            L L  N+IT  +P     G  SLQ+L L  N++      +   L  L LL L  N L+ 
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 405 VISEALFSNLSSLDTLQLSDN 425
           + ++  FS L ++ T+ L+ N
Sbjct: 143 I-AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 298 SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEIT 356
              L E+P  L    ++  +    N         I+ +  G+      L  + L+ N+I+
Sbjct: 20  GKGLTEIPTNLP--ETITEIRLEQNT--------IKVIPPGAFSPYKKLRRIDLSNNQIS 69

Query: 357 GTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
             +      G  SL  L L  N++T         L  L+LLLL+ N +   +    F +L
Sbjct: 70  -ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDL 127

Query: 415 SSLDTLQLSDNSLT 428
            +L+ L L DN L 
Sbjct: 128 HNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF-QFDSLAILNL 590
           LP  ++ + L +N     I          L  +DLSNN +S  L    F    SL  L L
Sbjct: 30  LPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL 87

Query: 591 ANNSFFGEIPDSMSF--LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
             N    E+P S+ F  L S+  L L  N ++      F +   L L+ L  N L   I 
Sbjct: 88  YGNKI-TELPKSL-FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

Query: 649 TWIGESLPNLVVLSLRSNKFH 669
                 L  +  + L  N F 
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 39/158 (24%)

Query: 164 QVLDLRFNNL--FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY 221
             + L  N +     G          LR +DL++ ++S+ +        LRSL +L    
Sbjct: 35  TEIRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLV--- 86

Query: 222 CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI 281
                                   L  N +T  +   LF    +L   + L +N+++  +
Sbjct: 87  ------------------------LYGNKIT-ELPKSLFEGLFSL-QLLLLNANKIN-CL 119

Query: 282 PL-AFGHMASLRHLDLLSNQLREVPK-FLGNMSSLKRL 317
            + AF  + +L  L L  N+L+ + K     + +++ +
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
             + L  +DLS N  S      F G L  L+ L L   +           L  LQ+L L 
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 170 FNNLFS--SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
            N +             L +L  L L D KL   +      S LR++  ++L
Sbjct: 113 ANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNK---- 667
           + L  N++    P  F    +L  +DL  N +S E+     + L +L  L L  NK    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 668 ----FHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK 708
               F G        L  +Q+L L+ N I+ +    F +   +  
Sbjct: 96  PKSLFEG--------LFSLQLLLLNANKINCLRVDAFQDLHNLNL 132

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 42/162 (25%)

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
              + +    I  I P  F     +L  ++LSNN++  +L           P        
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQIS-ELA----------PDA------ 75

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL------LTYLDLSNNLLSGRLPDC 578
           F G    L  +++SL L  NK       +  +   L      L  L L+ N ++  L   
Sbjct: 76  FQG----LR-SLNSLVLYGNK-------ITELPKSLFEGLFSLQLLLLNANKIN-CLRV- 121

Query: 579 WFQFD---SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNN 617
              F    +L +L+L +N        + S LR+I ++ L  N
Sbjct: 122 -DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 588 LNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEI 647
           + L  N+     P + S  + +  + L NN +S   P  F     L  + L  N ++ E+
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 648 PTWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSLNNISGIIPKCFHNFT 704
           P  + E L +L +L L +NK +  +    FQ   L ++ +L L  N +  I    F    
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 705 AMT 707
           A+ 
Sbjct: 153 AIQ 155

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 62/316 (19%), Positives = 106/316 (33%), Gaps = 54/316 (17%)

Query: 158 GNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVL-----SNLR 212
             L   ++LD  F +            LSSLR L+LA  +++       V+     S   
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMT--PVKCTVVAAVLGSGRH 101

Query: 213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS----IYPWLFNVSSNLVD 268
           +L  + L  C L P    +LL +        + L  N L       +   L +    +  
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVF--LRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT- 158

Query: 269 HIDLGSNQL--HGSIPLAFG--HMASLRHLDLLSNQLREV-PKFLGNM----SSLKRLVF 319
            + L +N L   G   L  G     S+ HL LL   L +   + L         L+ L  
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT----IPDLGGFPS----LQIL 371
           +YN            ++  + ++ SLE L+L FNE++      + DLGG       + + 
Sbjct: 219 AYNGAG---DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 372 SLENNRLTGTISKSIGQLSK---------------LELLLLSGNSLR----GVISEALFS 412
             E   ++   S  + ++ +               L L  L  +          ++ L  
Sbjct: 276 LTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRV 335

Query: 413 NLSSLDTLQLSDNSLT 428
               +  L     S  
Sbjct: 336 E-GEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 29/159 (18%)

Query: 286 GHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS 344
            ++ +L +   +  +L ++  + L     L  L F Y           QN    +   SS
Sbjct: 23  KNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE---------FQNQRFSAEVLSS 73

Query: 345 LEWLYLAFNEITGTIPDLGGF----------PSLQILSLENNRLTGTISKSIGQ-LSKLE 393
           L  L LA   +T     +              +L  ++L + +L     +++     +  
Sbjct: 74  LRQLNLAGVRMT----PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 394 LLLLSGNSL--RGV--ISEALFSNLSSLDTLQLSDNSLT 428
            L L  NSL       + + L  +   + TL+LS+N LT
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 27/218 (12%)

Query: 213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDL 272
                 L    +        +  N   S++ I  +N+ +  S+         N+  ++ L
Sbjct: 20  ETIKANLKKKSVT-----DAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNV-RYLAL 70

Query: 273 GSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEF 331
           G N+LH  I  A   + +L +L L  NQL+ +P      +++LK LV   N+L       
Sbjct: 71  GGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL------- 121

Query: 332 IQNVSSG-STKNSSLEWLYLAFNEITGTIPDLGGFPSL---QILSLENNRLTGTISKSIG 387
            Q++  G   K ++L +L LA N++  ++P  G F  L     L L  N+L         
Sbjct: 122 -QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFD 178

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
           +L++L+ L L  N L+ V     F  L+SL  + L DN
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 29/209 (13%)

Query: 115 TYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFA--GPIPHQLGNLSKLQVLDLRFNN 172
              +L   + +          L  + ++  +++       I +    L  ++ L L  N 
Sbjct: 22  IKANLKKKSVTD--AVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNK 74

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY---CDLPPIST 229
           L     L     L++L YL L   +L    N   V   L +L  L L       LP    
Sbjct: 75  LHDISALK---ELTNLTYLILTGNQLQSLPN--GVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 230 PSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHM 288
             L       +L  ++L++N L  S+   +F+  +NL   +DL  NQL  S+P   F  +
Sbjct: 130 DKL------TNLTYLNLAHNQLQ-SLPKGVFDKLTNL-TELDLSYNQLQ-SLPEGVFDKL 180

Query: 289 ASLRHLDLLSNQLREVPKFLGNMSSLKRL 317
             L+ L L  NQL+ VP   G    L  L
Sbjct: 181 TQLKDLRLYQNQLKSVPD--GVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLL 297
                  +L    +T            N +D I   ++ +  S+     ++ ++R+L L 
Sbjct: 18  FAETIKANLKKKSVT-DAVTQ---NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALG 71

Query: 298 SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLAFNEIT 356
            N+L ++      +++L  L+ + N+L        Q++ +G     ++L+ L L  N++ 
Sbjct: 72  GNKLHDISAL-KELTNLTYLILTGNQL--------QSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 357 GTIPDLGGFPSL---QILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
            ++PD G F  L     L+L +N+L         +L+ L  L LS N L+  + E +F  
Sbjct: 123 -SLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 414 LSSLDTLQLSDNSL 427
           L+ L  L+L  N L
Sbjct: 180 LTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 16/163 (9%)

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE 327
              +L    +          + S+  +   ++ ++ V      + +++ L    N+L  +
Sbjct: 22  IKANLKKKSV-TDAV-TQNELNSIDQIIANNSDIKSVQGI-QYLPNVRYLALGGNKLH-D 77

Query: 328 LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKS 385
           +S           + ++L +L L  N++  ++P+       +L+ L L  N+L       
Sbjct: 78  ISAL--------KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 386 IGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
             +L+ L  L L+ N L+  + + +F  L++L  L LS N L 
Sbjct: 129 FDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 31/204 (15%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLG---NLSK 162
            +  +L  +  +  + ++         I  L  +  LAL   +        +     L+ 
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLH-----DISALKELTN 86

Query: 163 LQVLDLRFNNL--FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLG 220
           L  L L  N L    +G  D L+   +L+ L L + +L    + V     L +LT L L 
Sbjct: 87  LTYLILTGNQLQSLPNGVFDKLT---NLKELVLVENQLQSLPDGV--FDKLTNLTYLNLA 141

Query: 221 Y---CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQL 277
           +     LP      L +      L  +DLS N L  S+   +F+  + L   + L  NQL
Sbjct: 142 HNQLQSLPKGVFDKLTN------LTELDLSYNQLQ-SLPEGVFDKLTQL-KDLRLYQNQL 193

Query: 278 HGSIPL-AFGHMASLRHLDLLSNQ 300
             S+P   F  + SL+++ L  N 
Sbjct: 194 K-SVPDGVFDRLTSLQYIWLHDNP 216

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 289 ASLRHLDLLSNQLREVPK--FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSL 345
                L L +N+   +        +  L+++ FS N+        I ++  G+    S +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--------ITDIEEGAFEGASGV 83

Query: 346 EWLYLAFNEITGTIP--DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
             + L  N +   +      G  SL+ L L +NR+T   + S   LS + LL L  N + 
Sbjct: 84  NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 404 GVISEALFSNLSSLDTLQLSDN 425
            V   A F  L SL TL L  N
Sbjct: 143 TVAPGA-FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSN 299
               + L+NN  T      +F     L   I+  +N++      AF   + +  + L SN
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLR-KINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 300 QLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWLYLAFNEITG 357
           +L  V  K    + SLK L+   N +          V + S    SS+  L L  N+IT 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRI--------TCVGNDSFIGLSSVRLLSLYDNQIT- 142

Query: 358 TIPDLGGF---PSLQILSLENN 376
           T+   G F    SL  L+L  N
Sbjct: 143 TVAP-GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 298 SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITG 357
           + +L ++P+ +        L  + NE    L       +    K   L  +  + N+IT 
Sbjct: 20  NQKLNKIPEHIP--QYTAELRLNNNEFT-VLEA-----TGIFKKLPQLRKINFSNNKIT- 70

Query: 358 TIPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
            I + G F     +  + L +NRL     K    L  L+ L+L  N +   +    F  L
Sbjct: 71  DIEE-GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGL 128

Query: 415 SSLDTLQLSDNSLT 428
           SS+  L L DN +T
Sbjct: 129 SSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 15/142 (10%)

Query: 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGY-- 221
             L L  N             L  LR ++ ++ K++              +  + L    
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASGVNEILLTSNR 92

Query: 222 -CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGS 280
             ++       L      +SL+ + L +N +T  +    F   S++   + L  NQ+  +
Sbjct: 93  LENVQHKMFKGL------ESLKTLMLRSNRIT-CVGNDSFIGLSSV-RLLSLYDNQIT-T 143

Query: 281 IPL-AFGHMASLRHLDLLSNQL 301
           +   AF  + SL  L+LL+N  
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 22/161 (13%)

Query: 70  CKWRGVRCSNK------TG---HVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLS 120
           C+   V CSN+           +   L L  +  + ++A          KL  L  ++ S
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEA-----TGIFKKLPQLRKINFS 65

Query: 121 WNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFS--SGN 178
            N  +      F G    ++E+ L+S +           L  L+ L LR N +    + +
Sbjct: 66  NNKITDIEEGAFEG-ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124

Query: 179 LDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
                 LSS+R L L D +++  +        L SL+ L L
Sbjct: 125 FI---GLSSVRLLSLYDNQITTVAP--GAFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 7/138 (5%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF-QFDSLAILNL 590
           +P   + L L+ N+F+   +         L  ++ SNN ++  + +  F     +  + L
Sbjct: 30  IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88

Query: 591 ANNSFFGEIPDSMSF--LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIP 648
            +N     +   M F  L S+ +L L +N ++      F+  S + L+ L  N ++  + 
Sbjct: 89  TSNR-LENVQHKM-FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 649 TWIGESLPNLVVLSLRSN 666
               ++L +L  L+L +N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 588 LNLANNSFFGEIPDSMSF--LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG 645
           L L NN F   +  +  F  L  +  ++  NN ++      F   S +  + L  N L  
Sbjct: 37  LRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 646 EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTA 705
            +   + + L +L  L LRSN+           LS +++L L  N I+ + P  F    +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 706 MT 707
           ++
Sbjct: 155 LS 156

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 289 ASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLE 346
           A  + LDL SN+L  +P K    ++ L+ L  + N+L        Q + +G   +  +LE
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--------QTLPAGIFKELKNLE 88

Query: 347 WLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSI-GQLSKLELLLLSGNSLR 403
            L++  N++   +P        +L  L L+ N+L  ++   +   L+KL  L L  N L+
Sbjct: 89  TLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 404 GVISEALFSNLSSLDTLQLSDNSLT 428
             + + +F  L+SL  L+L +N L 
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 55/214 (25%), Positives = 80/214 (37%), Gaps = 42/214 (19%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQL-GNLSKLQVLDLRFNN 172
              LDL  N  S  P   F   L KL  L L+  +    +P  +   L  L+ L +  N 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 173 LFS--SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
           L +   G  D    L +L  L L   +L      V    +L  LT L L           
Sbjct: 97  LQALPIGVFD---QLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSL----------- 140

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMA 289
                             N L  S+   +F+  ++L   + L +NQL   +P  AF  + 
Sbjct: 141 ----------------GYNELQ-SLPKGVFDKLTSL-KELRLYNNQLK-RVPEGAFDKLT 181

Query: 290 SLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYN 322
            L+ L L +NQL+ VP+    ++  LK L    N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF-QFDSLAILNL 590
           +P +   L+L  NK S S+          L  L L++N L   LP   F +  +L  L +
Sbjct: 35  IPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWV 92

Query: 591 ANNSFFGEIPDSM-SFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649
            +N     +P  +   L ++  L L  N L    P  F + ++LT + LG N L   +P 
Sbjct: 93  TDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMT 707
            + + L +L  L L +N+           L+ ++ L L  N +  +    F +   + 
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 47/195 (24%), Positives = 67/195 (34%), Gaps = 43/195 (22%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
           +L  L  L L+ N                     L +  F          L  L+ L + 
Sbjct: 59  RLTKLRLLYLNDNKLQ-----------------TLPAGIFKE--------LKNLETLWVT 93

Query: 170 FNNLFS--SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPI 227
            N L +   G  D    L +L  L L   +L        V  +L  LT L LGY +L  +
Sbjct: 94  DNKLQALPIGVFD---QLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSLGYNELQSL 148

Query: 228 ST---PSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLA 284
                  L       SL+ + L NN L   +    F+  + L   + L +NQL      A
Sbjct: 149 PKGVFDKL------TSLKELRLYNNQLK-RVPEGAFDKLTELK-TLKLDNNQLKRVPEGA 200

Query: 285 FGHMASLRHLDLLSN 299
           F  +  L+ L L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS-TKNSSLEWLY 349
              +D  S +L  +P      +  K+L    N+        + ++ S +  + + L  LY
Sbjct: 18  KNSVDCSSKKLTAIPS--NIPADTKKLDLQSNK--------LSSLPSKAFHRLTKLRLLY 67

Query: 350 LAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSI-GQLSKLELLLLSGNSLRGVI 406
           L  N++  T+P        +L+ L + +N+L   +   +  QL  L  L L  N L+  +
Sbjct: 68  LNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-L 124

Query: 407 SEALFSNLSSLDTLQLSDNSLT 428
              +F +L+ L  L L  N L 
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 59/261 (22%), Positives = 89/261 (34%), Gaps = 76/261 (29%)

Query: 358 TIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL 417
            IP        + L L++N+L+   SK+  +L+KL LL L+ N L+  +   +F  L +L
Sbjct: 30  AIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 418 DTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISD 477
           +TL ++DN L         P      +F             L        L +    +  
Sbjct: 88  ETLWVTDNKLQA------LPI----GVFDQ--------LVNLAE------LRLDRNQLKS 123

Query: 478 IVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVS 537
           + P  F  LT  L YL+L  NE++                  +    FD           
Sbjct: 124 LPPRVFDSLTK-LTYLSLGYNELQ-----------------SLPKGVFDK---------- 155

Query: 538 SLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF-QFDSLAILNLANNSFF 596
              L+                  L  L L NN L  R+P+  F +   L  L L NN   
Sbjct: 156 ---LTS-----------------LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

Query: 597 GEIPDSMSFLRSIGSLSLYNN 617
                +   L  +  L L  N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 53/202 (26%), Positives = 75/202 (37%), Gaps = 30/202 (14%)

Query: 611 SLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG 670
            L L +N LS      F   ++L L+ L  N L   +P  I + L NL  L +  NK   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 671 NIP---FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR 727
            +P   F    L ++  L L  N +  + P+ F + T +T      LS+  N   +L   
Sbjct: 99  ALPIGVFD--QLVNLAELRLDRNQLKSLPPRVFDSLTKLTY-----LSLGYNELQSL--- 148

Query: 728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNL 787
               P   FD            L  +K + L +N+L          L  L  L L NN L
Sbjct: 149 ----PKGVFDK-----------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 788 TGQITPRIGQLKSLDFLDLSRN 809
                     L+ L  L L  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 465 TVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ 524
           T  LD+ +  +S +    F  LT  L  L L++N+++                  + +  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQ-----------------TLPAGI 80

Query: 525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHL--LTYLDLSNNLLSGRLPDCWFQF 582
           F         N+ +L ++ NK   ++     +   L  L  L L  N L   LP   F  
Sbjct: 81  FKEL-----KNLETLWVTDNKLQ-ALP--IGVFDQLVNLAELRLDRNQLK-SLPPRVF-- 129

Query: 583 DSLA---ILNLANNSFFGEIPDSMSF--LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD 637
           DSL     L+L  N     +P    F  L S+  L LYNN L       F   ++L  + 
Sbjct: 130 DSLTKLTYLSLGYNEL-QSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 638 LGKNGLSGEIPTWIGESLPNLVVLSLRSN 666
           L  N L   +P    +SL  L +L L+ N
Sbjct: 188 LDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 5e-09
 Identities = 50/340 (14%), Positives = 101/340 (29%), Gaps = 45/340 (13%)

Query: 107 SLLKLQHLTYLDLSW-NNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK--- 162
           +  +   L  L L   + F+   +   +    K+  L +  + F+      L  L++   
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 163 -LQVLDLRFNNLFSSGNLD---WLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
            L+VL+            D         SL  + + D ++ +   + +  +NL       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
           L      P       ++N     ++  L  +Y+  +  P LF  ++ +   +DL    L 
Sbjct: 253 LNEDIGMP-----EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-KLDLLYALLE 306

Query: 279 GSIPL-AFGHMASLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNV 335
                       +L  L+   N + +  +         LKRL          + +    V
Sbjct: 307 TEDHCTLIQKCPNLEVLE-TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365

Query: 336 SSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT----GTISKSIGQLSK 391
           S        L  L               G   L+ +++  + +T     +I   +  L  
Sbjct: 366 S-----QRGLIAL-------------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 392 LELLLLSGNSLRGVIS-----EALFSNLSSLDTLQLSDNS 426
             L+LL        +       +L      L         
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 5e-09
 Identities = 49/334 (14%), Positives = 99/334 (29%), Gaps = 38/334 (11%)

Query: 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLR 169
             + L  + +   +F    +  F  +   L E    S      +P +  NL   + L   
Sbjct: 218 NCRSLVSVKVG--DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 170 FNNLFSSGNLDWL-SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIS 228
             +      +  L  + + +R LDL    L    +   ++    +L  L         I 
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLETRNV----IG 330

Query: 229 TPSLLHI-NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGH 287
              L  +  Y K L+ + +        +      VS   +  +  G              
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-------------- 376

Query: 288 MASLRHLDLLSNQ-----LREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
              L ++ +  +      L  +  +L N+   + ++    E   +L      V S     
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP-LDNGVRSLLIGC 435

Query: 343 SSLEWLYLAFNEITGTIPDLG------GFPSLQILSLENNRLTGTISKSIGQ-LSKLELL 395
             L        +  G + DLG        P+++ + L     +        +    L+ L
Sbjct: 436 KKLRRFAFYLRQ--GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 396 LLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTL 429
            + G         A  + L SL  L +     ++
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 38/276 (13%), Positives = 87/276 (31%), Gaps = 21/276 (7%)

Query: 159 NLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
             +   ++   +    +    +  + L  L+ +      +S         +    L  L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 219 LGYCDLPPISTPSLLHI-NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV--DHIDLGSN 275
           L  C     +T  LL I  + + ++ + +  +  +     WL  ++ +    + ++    
Sbjct: 145 LDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT 202

Query: 276 QLHG----SIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEF 331
           +        +     +  SL  + +   ++ E+  F    ++L+            + E 
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEIT-GTIPDLGGF-PSLQILSLENNRL-TGTISKSIGQ 388
             N+              L  + +    +P L  F   ++ L L    L T      I +
Sbjct: 263 YMNLVFPRKLCR------LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316

Query: 389 LSKLELLLLSGN-SLRGVISEALFSNLSSLDTLQLS 423
              LE+L        RG+  E L      L  L++ 
Sbjct: 317 CPNLEVLETRNVIGDRGL--EVLAQYCKQLKRLRIE 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 47/320 (14%), Positives = 99/320 (30%), Gaps = 37/320 (11%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGP--IPHQLGNLSKLQV 165
                +L        N     +PE   +L    +L      + GP  +P      ++++ 
Sbjct: 239 FKAAANLEEFCGGSLN-EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           LDL +  L +  +   +    +L  L+  +  +        +    + L  L +      
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRG-LEVLAQYCKQLKRLRIERGADE 355

Query: 226 P--------ISTPSLLHI-NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD----HIDL 272
                    +S   L+ +    + LE + +  + +TN     +     NL D     +D 
Sbjct: 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 273 GSNQLHGSIPLAFGHMAS----LRHLDLLSNQLR---EVPKFLG-NMSSLKRLVFSYNEL 324
                   +      +      LR       Q         ++G    +++ ++  Y   
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-- 473

Query: 325 RGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT--GTIPDLGGFPSLQILSLENNRLTGTI 382
            GE  E +   S G      L+ L +     +       +   PSL+ L ++  R + T 
Sbjct: 474 -GESDEGLMEFSRGCPN---LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529

Query: 383 SKSIGQ---LSKLELLLLSG 399
              +        +EL+    
Sbjct: 530 QDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 103 TINPSLLKLQHLTYLDLSW-NNFSGSPIPEFIGSLG----KLSELALSSAQFA---GPIP 154
           +I   L  L     + L      +  P+   + SL     KL   A    Q       + 
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456

Query: 155 HQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSL 214
           +       ++ + L +      G +++     +L+ L++  C  S+ +     ++ L SL
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA-IAAAVTKLPSL 515

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSN 248
             L++            +       ++E+I    
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 294 LDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFN 353
           + L +  + +  +   N    + L      LRG     I+N+ +   +    + +  + N
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELD-----LRGYKIPVIENLGATLDQ---FDAIDFSDN 52

Query: 354 EITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
           EI   +        L+ L + NNR+          L  L  L+L+ NSL  +      ++
Sbjct: 53  EIR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111

Query: 414 LSSLDTLQLSDNSLT 428
           L SL  L +  N +T
Sbjct: 112 LKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 13/117 (11%)

Query: 287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE 346
           +    R LDL   ++  +      +     + FS NE+R      +            L+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-----LDGFP----LLRRLK 67

Query: 347 WLYLAFNEITGTIPDLG-GFPSLQILSLENNRLT--GTISKSIGQLSKLELLLLSGN 400
            L +  N I      L    P L  L L NN L   G +   +  L  L  L +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
           L     +D S N      + +    L +L  L +++ +           L  L  L L  
Sbjct: 41  LDQFDAIDFSDNEIR--KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 171 NNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSN-WVQVLSNLRSLTNL 217
           N+L   G+LD L+ L SL YL +    ++   +  + V+  +  +  L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 44/169 (26%)

Query: 156 QLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLT 215
           Q  N  + + LDLR   +    NL   + L     +D +D ++ K          LR L 
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRKLDG----FPLLRRLK 67

Query: 216 NLYLGY---CDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDL 272
            L +     C +      +L        L  + L+NN L               +  +D 
Sbjct: 68  TLLVNNNRICRIGEGLDQAL------PDLTELILTNNSLVE-------------LGDLD- 107

Query: 273 GSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP----KFLGNMSSLKRL 317
                    PLA   + SL +L +L N +          +  +  ++ L
Sbjct: 108 ---------PLA--SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 135 SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA 194
           +  +  EL L   +    I +    L +   +D   N +     LD    L  L+ L + 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLKTLLVN 72

Query: 195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN 253
           + ++ +      +   L  LT L L    L  +    L  +   KSL  + +  N +TN
Sbjct: 73  NNRICRIGEG--LDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP--DSMSFLRSIGSLSLYNNS 618
              LDL    +   + +     D    ++ ++N    EI   D    LR + +L + NN 
Sbjct: 21  DRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNR 75

Query: 619 LSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN 666
           +             LT + L  N L          SL +L  L +  N
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.8 bits (142), Expect = 6e-09
 Identities = 44/321 (13%), Positives = 100/321 (31%), Gaps = 34/321 (10%)

Query: 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVL 166
           S  +++      +   N         I    K+  + L              + +   ++
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK----------PHFADFNLV 85

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLS-NLRSLTNLYLGYCDLP 225
              +            S  + L  + L    ++     +++++ + ++   L L  C+  
Sbjct: 86  PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEG- 142

Query: 226 PISTPSLLHI-NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLA 284
             ST  L  I    ++L+ +DL  + + +    WL +        + L  + L   +   
Sbjct: 143 -FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV--- 198

Query: 285 FGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS 344
               ++L  L             +    +LK L  +      +L+  +Q         + 
Sbjct: 199 --SFSALERL-------------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 345 LEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRG 404
                +  +  +G    L G   L+ LS   + +   +       S+L  L LS  +++ 
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 405 VISEALFSNLSSLDTLQLSDN 425
                L      L  L + D 
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 48/328 (14%), Positives = 103/328 (31%), Gaps = 32/328 (9%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSS------AQFAGPIPHQLGNLSKLQVL 166
           +L  L L+        +   +    +L EL                +   L    +L+ L
Sbjct: 212 NLKSLKLN-RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
              F +   +      S  S L  L+L+   +    + V++L     L  L++       
Sbjct: 271 SG-FWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDY---- 324

Query: 227 ISTPSLLHI-NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF 285
           I    L  + +  K L  + +        +      ++   +  + +G  +L        
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFP--SEPFVMEPNVALTEQGLVSVSMGCPKLE------- 375

Query: 286 GHMASLRHLDLLSNQ-LREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGS--TKN 342
              + L     ++N  L  + +   NM+   RL     +    L+    ++  G+     
Sbjct: 376 ---SVLYFCRQMTNAALITIARNRPNMTRF-RLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 343 SSLEWLYLAFNEITGTIPDLG-GFPSLQILSLENNRLTGTISKSIGQ-LSKLELLLLSGN 400
             L  L L+          +G     +++LS+     +      +      L  L +   
Sbjct: 432 KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491

Query: 401 SLRGVISEALFSNLSSLDTLQLSDNSLT 428
                   A  S L ++ +L +S  S++
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVS 519

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 293 HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAF 352
            L  +   + ++   L  + + K L  S N +     E I ++S       +L  L L  
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLS----GMENLRILSLGR 79

Query: 353 NEITGTIPDLGG-FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF 411
           N I   I +L     +L+ L +  N++  ++S  I +L  L +L +S N +         
Sbjct: 80  NLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 412 SNLSSLDTLQLSDNSLTLKFSHDWTPP 438
           + L  L+ L L+ N L   +  +    
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKL 163
           ++ +L  L+   +L LS NN     I   +  +  L  L+L        I +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTL 95

Query: 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYL 219
           + L + +N + S   L  +  L +LR L +++ K++ +   +  L+ L  L +L L
Sbjct: 96  EELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSK 391
            +   S     +    L+     I      L    + + L+L  N +   IS S+  +  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMEN 71

Query: 392 LELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
           L +L L  N ++ +  E L +   +L+ L +S N + 
Sbjct: 72  LRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 27/149 (18%)

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLR 292
           LH      +E +D + + L                 H+ L +N +     L    M +LR
Sbjct: 30  LHGMIPP-IEKMDATLSTLKA-------------CKHLALSTNNIEKISSL--SGMENLR 73

Query: 293 HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAF 352
            L L  N ++++        +L+ L  SYN++       +  +     K  +L  LY++ 
Sbjct: 74  ILSLGRNLIKKIENLDAVADTLEELWISYNQI-----ASLSGIE----KLVNLRVLYMSN 124

Query: 353 NEIT--GTIPDLGGFPSLQILSLENNRLT 379
           N+IT  G I  L     L+ L L  N L 
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 153 IPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR 212
           +   L  L   + L L  NN+     +  LS + +LR L L    + K  N     +   
Sbjct: 40  MDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGRNLIKKIENL---DAVAD 93

Query: 213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN 253
           +L  L++ Y  +  +S      I    +L V+ +SNN +TN
Sbjct: 94  TLEELWISYNQIASLS-----GIEKLVNLRVLYMSNNKITN 129

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSS---AQFAGPIPHQLGNLSKLQ 164
           L  +++L  L L  N      I         L EL +S    A  +G     +  L  L+
Sbjct: 66  LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSG-----IEKLVNLR 118

Query: 165 VLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQ--------VLSNLRSLTN 216
           VL +  N + + G +D L+ L  L  L LA   L                V+  L +L  
Sbjct: 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178

Query: 217 L 217
           L
Sbjct: 179 L 179

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 12/236 (5%)

Query: 72  WRGVRCSNKTGHVLGLD----LRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGS 127
           W+ +  + K  H             +     +              + ++DLS +    S
Sbjct: 49  WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 108

Query: 128 PIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL-SYLS 186
            +   +    KL  L+L   + + PI + L   S L  L+L   + FS   L  L S  S
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168

Query: 187 SLRYLDLADC-KLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHI-NYSKSLEVI 244
            L  L+L+ C   ++    V V     ++T L L       +    L  +     +L  +
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLVHL 227

Query: 245 DLSN-NYLTNSIYPWLFNVSSNLVDHIDLGS-NQLHGSIPLAFGHMASLRHLDLLS 298
           DLS+   L N  +   F   + L  H+ L     +     L  G + +L+ L +  
Sbjct: 228 DLSDSVMLKNDCFQEFFQ-LNYLQ-HLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
           +LE+L L    +  ++ +L   P L+ L L  NR+ G +     +L  L  L LSGN L+
Sbjct: 50  NLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 404 GVISEALFSNLSSLDTLQLSDNSLT 428
            + +      L  L +L L +  +T
Sbjct: 109 DISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 85  LGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELAL 144
           L LD   S+D  ++ L            +L +L L             +  L KL +L L
Sbjct: 29  LVLDNCKSNDGKIEGLTAE-------FVNLEFLSLINVGLI---SVSNLPKLPKLKKLEL 78

Query: 145 SSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSN- 203
           S  +  G +      L  L  L+L  N L     L+ L  L  L+ LDL +C+++  ++ 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 204 WVQVLSNLRSLTNL 217
              V   L  LT L
Sbjct: 139 RESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351
             LD   +   ++        +L+ L      L       + N+     K   L+ L L+
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLP----KLPKLKKLELS 79

Query: 352 FNEITGTIPDLGG-FPSLQILSLENNRLTGTIS-KSIGQLSKLELLLLSGN 400
            N I G +  L    P+L  L+L  N+L    + + + +L  L+ L L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 36/167 (21%)

Query: 155 HQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSL 214
            +    + ++ L L              +   +L +L L +  L   SN    L  L  L
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPKL 73

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274
             L L       I     +      +L  ++LS N L +             +  ++   
Sbjct: 74  KKLELSENR---IFGGLDMLAEKLPNLTHLNLSGNKLKD-------------ISTLE--- 114

Query: 275 NQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF----LGNMSSLKRL 317
                  PL    +  L+ LDL + ++  +  +       +  L  L
Sbjct: 115 -------PLK--KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 561 LTYLDLSNNLLS-GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSL 619
           +  L L N   + G++     +F +L  L+L N         ++  L  +  L L  N +
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRI 83

Query: 620 SGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN---KFHGNIPFQL 676
            GGL         LT ++L  N L         + L  L  L L +      +       
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 677 CYLSHIQILD 686
             L  +  LD
Sbjct: 144 KLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593
            N+  L+L       S+S L  +    L  L+LS N + G L     +  +L  LNL+ N
Sbjct: 49  VNLEFLSLINVGLI-SVSNLPKLPK--LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 594 SF--FGEIPDSMSFLRSIGSLSLYNNSLS 620
                  + + +  L  + SL L+N  ++
Sbjct: 106 KLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
            LE+L      +T +I +L     L+ L L +NR++G +     +   L  L LSGN ++
Sbjct: 43  ELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 404 GVISEALFSNLSSLDTLQLSDNSLT 428
            + +      L +L +L L +  +T
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLD 167
             + + L +L       +       +  L KL +L LS  + +G +         L  L+
Sbjct: 38  TDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 168 LRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSN-WVQVLSNLRSLTNL 217
           L  N +     ++ L  L +L+ LDL +C+++  ++    V   L  LT L
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 11/111 (9%)

Query: 292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351
             LD   +   ++         L+ L      L       I N+     K + L+ L L+
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLP----KLNKLKKLELS 72

Query: 352 FNEITGTIPDLG-GFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGN 400
            N ++G +  L    P+L  L+L  N++   +  + + +L  L+ L L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 159 NLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
             S ++ L L  +                L +L   +  L+  +N    L  L  L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKLKKLE 70

Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN 253
           L       +S    +      +L  ++LS N + +
Sbjct: 71  LSDNR---VSGGLEVLAEKCPNLTHLNLSGNKIKD 102

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN 593
             +  L+      + SI+ L  ++   L  L+LS+N +SG L     +  +L  LNL+ N
Sbjct: 42  EELEFLSTINVGLT-SIANLPKLNK--LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 594 SF--FGEIPDSMSFLRSIGSLSLYNN 617
                  I + +  L ++ SL L+N 
Sbjct: 99  KIKDLSTI-EPLKKLENLKSLDLFNC 123

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 37/158 (23%)

Query: 271 DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSE 330
            L  NQ+    P  F  + +L+ L L SNQL  +P   G        VF           
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV--G--------VFD---------- 85

Query: 331 FIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL---QILSLENNRLTGTISKSIG 387
                       + L  L L  N++T  +P    F  L   + L +  N+LT  + + I 
Sbjct: 86  ----------SLTQLTVLDLGTNQLT-VLPS-AVFDRLVHLKELFMCCNKLT-ELPRGIE 132

Query: 388 QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
           +L+ L  L L  N L+ +   A F  LSSL    L  N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGA-FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 25/142 (17%)

Query: 226 PISTPSL-LHINYSKSLE-----------VIDLSNNYLTNSIYPWLFNVSSNLVDHIDLG 273
           P +   L LH N    LE            + L +N L  ++   +F+  + L   +DLG
Sbjct: 39  PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL-TVLDLG 96

Query: 274 SNQLHGSIPL-AFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFI 332
           +NQL   +P   F  +  L+ L +  N+L E+P+ +  ++ L  L    N+L        
Sbjct: 97  TNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-------- 147

Query: 333 QNVSSGSTKN-SSLEWLYLAFN 353
           +++  G+    SSL   YL  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 7e-08
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 359 IPDLGGFPSLQILSLENNRLTGTI-SKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL 417
           +  L G  +L  L +EN +    +  + +  L +L  L +  + LR  ++   F     L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 418 DTLQLSDNSLTLKFSHDWTPPFQLFNIFLGS 448
             L LS N+L    S        L  + L  
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 274 SNQLHGSIPLAFGHMASLRHLDLLSNQ-LREVPKF-LGNMSSLKRLVFSYNELRGELSEF 331
           +               +L  L + + Q L+ +    L  +  L+ L    + LR      
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR------ 69

Query: 332 IQNVSSGS-TKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLT 379
              V+  +      L  L L+FN +           SLQ L L  N L 
Sbjct: 70  --FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 1/98 (1%)

Query: 228 STPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGH 287
           +  SL H+  +++L  + + N      +          L  ++ +  + L    P AF  
Sbjct: 20  ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLRFVAPDAFHF 78

Query: 288 MASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325
              L  L+L  N L  +        SL+ LV S N L 
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
                L   ++LT L +             +  LG+L  L +  +      P       +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA------DCKLSKFSNWVQ 206
           L  L+L FN L  S +   +  L SL+ L L+       C L     W +
Sbjct: 82  LSRLNLSFNAL-ESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEE 129

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 167 DLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPP 226
            LR     +  +L  L    +L  L + + +  +     + L  L  L NL +    L  
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRF 70

Query: 227 ISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
           ++  +         L  ++LS N L  S+        S     + L  N LH
Sbjct: 71  VAPDAFHFT---PRLSRLNLSFNALE-SLSWKTVQGLSLQ--ELVLSGNPLH 116

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 348 LYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVIS 407
           LYL  N+ T    +L  +  L ++ L NNR++   ++S   +++L  L+LS N LR  I 
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIP 94

Query: 408 EALFSNLSSLDTLQLSDNSL 427
              F  L SL  L L  N +
Sbjct: 95  PRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274
           T LYL          P  L     K L +IDLSNN ++ ++    F+  + L   + L  
Sbjct: 34  TELYLDGNQF--TLVPKELS--NYKHLTLIDLSNNRIS-TLSNQSFSNMTQL-LTLILSY 87

Query: 275 NQLHGSIPL-AFGHMASLRHLDLLSNQLREVPKFL-GNMSSLKRL 317
           N+L   IP   F  + SLR L L  N +  VP+    ++S+L  L
Sbjct: 88  NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 31/137 (22%)

Query: 289 ASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL 348
             +  L L  NQ   VPK L N   L  +  S N         I  +S+           
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR--------ISTLSNQ---------- 72

Query: 349 YLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISE 408
             +F+ +T           L  L L  NRL     ++   L  L LL L GN +  V+ E
Sbjct: 73  --SFSNMT----------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

Query: 409 ALFSNLSSLDTLQLSDN 425
             F++LS+L  L +  N
Sbjct: 120 GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 369 QILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
             L L+ N+ T  + K +     L L+ LS N +   +S   FSN++ L TL LS N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 35/139 (25%)

Query: 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCD 223
             L L  N          LS    L  +DL++ ++S  SN     SN+  L  L L Y  
Sbjct: 34  TELYLDGNQFTLVPKE--LSNYKHLTLIDLSNNRISTLSNQS--FSNMTQLLTLILSY-- 87

Query: 224 LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL 283
                                    N L   I P  F+   +L   + L  N +   +P 
Sbjct: 88  -------------------------NRLR-CIPPRTFDGLKSL-RLLSLHGNDIS-VVPE 119

Query: 284 -AFGHMASLRHLDLLSNQL 301
            AF  +++L HL + +N L
Sbjct: 120 GAFNDLSALSHLAIGANPL 138

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 36/161 (22%)

Query: 268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE 327
            ++DL +N L       F  + SL  L L  N+L+ +P   G        VF  N+L   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN--G--------VF--NKL--- 75

Query: 328 LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL---QILSLENNRLTGTISK 384
                          +SL +L L+ N++  ++P+ G F  L   + L+L  N+L      
Sbjct: 76  ---------------TSLTYLNLSTNQLQ-SLPN-GVFDKLTQLKELALNTNQLQSLPDG 118

Query: 385 SIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
              +L++L+ L L  N L+ V     F  L+SL  + L DN
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 298 SNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITG 357
           S     VP   G  +    L    N L          V    T    L  LYL  N++  
Sbjct: 16  SQGRTSVPT--GIPAQTTYLDLETNSL----KSLPNGVFDELTS---LTQLYLGGNKLQ- 65

Query: 358 TIPDLGGFPS---LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
           ++P+ G F     L  L+L  N+L    +    +L++L+ L L+ N L+  + + +F  L
Sbjct: 66  SLPN-GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKL 123

Query: 415 SSLDTLQLSDNSL 427
           + L  L+L  N L
Sbjct: 124 TQLKDLRLYQNQL 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 348 LYLAFNEITGTIPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRG 404
           L L  NE+   I   G F   P L  L L+ N+LTG    +    S ++ L L  N ++ 
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 405 VISEALFSNLSSLDTLQLSDNSLT 428
            IS  +F  L  L TL L DN ++
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 345 LEWLYLAFNEITGTIPDLGGF---PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           L  L L  N++T  I     F     +Q L L  N++    +K    L +L+ L L  N 
Sbjct: 56  LVKLELKRNQLT-GIEP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113

Query: 402 LRGVISEALFSNLSSLDTLQLSDN 425
           +  V+  + F +L+SL +L L+ N
Sbjct: 114 ISCVMPGS-FEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 215 TNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGS 274
           T L L   +L  IS+  L        L  ++L  N LT  I P  F  +S++   + LG 
Sbjct: 32  TELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLT-GIEPNAFEGASHI-QELQLGE 87

Query: 275 NQLHGSIPL-AFGHMASLRHLDLLSNQLREVPK--FLGNMSSLKRL 317
           N++   I    F  +  L+ L+L  NQ+  V    F  +++SL  L
Sbjct: 88  NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSL 131

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 2e-06
 Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 34/221 (15%)

Query: 221 YCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFN--VSSNLVDHIDLGSNQLH 278
             D   I+   + +       E +   +         W+    +S  L     L + ++ 
Sbjct: 121 GEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK 180

Query: 279 GSIPLAFGHMAS--LRHLDLLSNQL-REVPKFLG--NMSSLKRLVFSYNELRGELSEFIQ 333
           G+  L+ G      L+ L+++S  L   V + +   ++ +L++L          L   ++
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL---------VLYVGVE 231

Query: 334 NVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQ---LS 390
           +       +  +      F++          FP+L+ L + +      + +   +   L 
Sbjct: 232 DYGF----DGDMNVFRPLFSK--------DRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 391 KLELLLLSGNSLRGVISEALFSNL---SSLDTLQLSDNSLT 428
           +LE + +S   L    +  L  ++     L  + +  N L+
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 4e-06
 Identities = 28/203 (13%), Positives = 57/203 (28%), Gaps = 34/203 (16%)

Query: 109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDL 168
            +      +D      S     +    L  +  L     +    +         L+ L++
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200

Query: 169 RFNNLFSSGNLDWL--SYLSSLRYLDL--------ADCKLSKFSNWVQVLSNLRSLTNLY 218
                     ++ +  S L +L  L L         D  ++ F           +L  L 
Sbjct: 201 ISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLG 258

Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
           +   +   +     L  +    LE +D+S   LT                  D G+  L 
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLT------------------DEGARLLL 300

Query: 279 GSIPLAFGHMASLRHLDLLSNQL 301
             +      +  L+ +++  N L
Sbjct: 301 DHVD----KIKHLKFINMKYNYL 319

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 138 KLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS----SLRYLDL 193
           K+  +  + +         +  L  ++ + L   +    G L+ LS L     S+  +++
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 194 ADC-KLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLS 247
             C  ++     +  L + R+L  L+L     P +     +   +  SL  ++L 
Sbjct: 122 ISCGNVTDKG--IIALHHFRNLKYLFLSDL--PGVKEKEKIVQAFKTSLPSLELK 172

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPS---LQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
           ++ + LYL  N+IT  +   G F     L  L L+NN+LT   +    +L++L  L L+ 
Sbjct: 30  TTTQVLYLYDNQIT-KLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDN 425
           N L+ +   A F NL SL  + L +N
Sbjct: 88  NQLKSIPRGA-FDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 240 SLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPL-AFGHMASLRHLDLLS 298
           + +V+ L +N +T  + P +F+  + L   +DL +NQL   +P   F  +  L  L L  
Sbjct: 31  TTQVLYLYDNQIT-KLEPGVFDRLTQL-TRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87

Query: 299 NQLREVPKFLGNMSSLKRL 317
           NQL+ +P+  G   +LK L
Sbjct: 88  NQLKSIPR--GAFDNLKSL 104

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPS---LQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
           +  + L+L  N+IT  +   G F     LQ L   +N+LT   +    +L++L  L L+ 
Sbjct: 33  TDKQRLWLNNNQIT-KLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDN 425
           N L+ +   A F NL SL  + L +N
Sbjct: 91  NHLKSIPRGA-FDNLKSLTHIYLYNN 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPS---LQILSLENNRLTGTISKSIGQLSKLELLLLSG 399
           SS   L L  N++  ++P  G F     L  LSL  N++         +L+KL +L L  
Sbjct: 28  SSATRLELESNKLQ-SLPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 400 NSLRGVISEALFSNLSSLDTLQLSDNSL 427
           N L+  +   +F  L+ L  L L  N L
Sbjct: 86  NKLQ-SLPNGVFDKLTQLKELALDTNQL 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1025
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	96.99
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.86
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	96.81
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	96.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.67
2js7_A	160	Myeloid differentiation primary response protein M	96.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.3e-91  Score=867.19  Aligned_cols=709  Identities=30%  Similarity=0.433  Sum_probs=565.2

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCccccc---ccccCcC
Q 047190           34 SCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGT---INPSLLK  110 (1025)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~---l~~~l~~  110 (1025)
                      .+.++|++||++||+++.||. .+++|+   .+.+||+|+||+|+  +|||++|||++      ..+.|.   +|+++.+
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~------~~l~g~~~~l~~~l~~   75 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS------KPLNVGFSAVSSSLLS   75 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT------SCCCEEHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC------CCcCCccCccChhHhc
Confidence            457899999999999999988 899997   47799999999998  69999999998      678898   9999999


Q ss_pred             CCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcch--hccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190          111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPH--QLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL  188 (1025)
Q Consensus       111 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  188 (1025)
                      +++|+.++++.+.+.  ++|+.++++++|++|+|++|.++|.+|.  .++++++|++|+|++|.+........+.++++|
T Consensus        76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            999999999999875  4678999999999999999999999998  999999999999999987443333445889999


Q ss_pred             CeeeccCCcCCCCcc-hHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCc
Q 047190          189 RYLDLADCKLSKFSN-WVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLV  267 (1025)
Q Consensus       189 ~~L~L~~n~l~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L  267 (1025)
                      ++|++++|.+++... ....+.++++|++|++++|.+.+..+.    ..+ ++|++|++++|.+++.+|. +..++.  |
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~~--L  225 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRC-VNLEFLDVSSNNFSTGIPF-LGDCSA--L  225 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTC-TTCCEEECCSSCCCSCCCB-CTTCCS--C
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccC-CcCCEEECcCCcCCCCCcc-cccCCC--C
Confidence            999999999987532 112378999999999999998876542    333 8888888888888877666 777777  8


Q ss_pred             cEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhc-CCCCCCCCCC
Q 047190          268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNV-SSGSTKNSSL  345 (1025)
Q Consensus       268 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~~~~~~~~L  345 (1025)
                      ++|++++|.+++.+|..++.+++|++|++++|.+++ +|..  .+++|++|++++|.+.+.+|..+... +       +|
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-------~L  296 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-------TL  296 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-------TC
T ss_pred             CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-------cC
Confidence            888888888888888888888888888888888776 4443  67777777777777776666655443 3       77


Q ss_pred             cEEEccccccccccCC-CCCCCCCcEEEeecccccCccccc-ccccCCcceeeccCcccccccchhhhcCCC-CCcEEEC
Q 047190          346 EWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKS-IGQLSKLELLLLSGNSLRGVISEALFSNLS-SLDTLQL  422 (1025)
Q Consensus       346 ~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L  422 (1025)
                      ++|+|++|.+++.+|. ++.+++|++|++++|++++.+|.. +..+++|++|++++|.+.+.+|.. +..++ +|++|++
T Consensus       297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~L  375 (768)
T 3rgz_A          297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDL  375 (768)
T ss_dssp             SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEEC
T ss_pred             CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEc
Confidence            7777777777766665 677777777777777777666654 677777777777777777666654 45554 7777777


Q ss_pred             CCCccccccccCCCC--CcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccC
Q 047190          423 SDNSLTLKFSHDWTP--PFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM  500 (1025)
Q Consensus       423 s~n~l~~~~~~~~~~--~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l  500 (1025)
                      ++|.+++..+..+..  ..+|+.|++++|.+.+.+|.++..+++|+.|++++|.+++..|..+..+. +|++|++++|.+
T Consensus       376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l  454 (768)
T 3rgz_A          376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNML  454 (768)
T ss_dssp             CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCC
T ss_pred             cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcc
Confidence            777776655555444  55666666666666666666666666666666666666666666555443 455555555555


Q ss_pred             CCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCccc
Q 047190          501 KGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF  580 (1025)
Q Consensus       501 ~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  580 (1025)
                      ++.+|                                              .... .+++|++|++++|.+++.+|..+.
T Consensus       455 ~~~~p----------------------------------------------~~~~-~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          455 EGEIP----------------------------------------------QELM-YVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             CSCCC----------------------------------------------GGGG-GCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cCcCC----------------------------------------------HHHc-CCCCceEEEecCCcccCcCCHHHh
Confidence            44333                                              2111 246788888888888888888888


Q ss_pred             CCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcE
Q 047190          581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVV  660 (1025)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~  660 (1025)
                      ++++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.+++ ....+..
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~  566 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIA  566 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBC
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhh
Confidence            888888888888888888888888888888888888888888888888888888888888888888888877 3444433


Q ss_pred             EEee---------cC-------------cCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          661 LSLR---------SN-------------KFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       661 L~L~---------~N-------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      +++.         ++             .+.+..+..+..++.++.++++.|.++|.+|..++.++.|            
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L------------  634 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------  634 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC------------
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc------------
Confidence            3222         21             2455666677777788888888888888888877776665            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.||||+|+++|.+|.++++++.|+.|+|++|+++|.||..++.+
T Consensus       635 -----------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          635 -----------------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             -----------------------------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             -----------------------------------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence                                               889999999999999999999999999999999999999999999


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCC
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDE  871 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C~~~  871 (1025)
                      ++|++||||+|+++|.||..++.+++|++||+|+|+|+|.||.++++.+|+..+|.|||++||.|+. .|...
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987 89543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-69  Score=672.29  Aligned_cols=616  Identities=27%  Similarity=0.349  Sum_probs=537.7

Q ss_pred             ccccCcCCCCCcEEEccCCCCCCCCCcc--cccCcccccccccccccCCCCcchhc-cCCCCCCEEecccCCCCCCCCch
Q 047190          104 INPSLLKLQHLTYLDLSWNNFSGSPIPE--FIGSLGKLSELALSSAQFAGPIPHQL-GNLSKLQVLDLRFNNLFSSGNLD  180 (1025)
Q Consensus       104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~L~~L~~L~Ls~n~i~~~~~~~  180 (1025)
                      +|..++++++|++|+|++|.+++. +|.  .++++++|++|+|++|.+++.+|..+ .++++|++|+|++|.+.. ..+.
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~  169 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVV  169 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE-ETHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC-cCCh
Confidence            457899999999999999999985 788  99999999999999999999888776 899999999999998733 2333


Q ss_pred             h---cccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCch
Q 047190          181 W---LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYP  257 (1025)
Q Consensus       181 ~---l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  257 (1025)
                      .   +.++++|++|++++|.+++...    +.++++|++|++++|.+.+..+.   +.++ ++|++|++++|.+++.+|.
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~---l~~l-~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF---LGDC-SALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB---CTTC-CSCCEEECCSSCCCSCHHH
T ss_pred             hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc---cccC-CCCCEEECcCCcCCCcccH
Confidence            3   7899999999999999987543    48899999999999999987763   4445 9999999999999999999


Q ss_pred             hhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCC-CCccEEEeecCCCCCcchHHhhhc
Q 047190          258 WLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNM-SSLKRLVFSYNELRGELSEFIQNV  335 (1025)
Q Consensus       258 ~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l  335 (1025)
                      .+..+++  |++|++++|.+.+.+|..  .+++|++|++++|.+++ +|..+... ++|++|++++|.+.+.+|..+..+
T Consensus       242 ~l~~l~~--L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          242 AISTCTE--LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             HTTTCSS--CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             HHhcCCC--CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            9999999  999999999999888765  89999999999999996 89888775 999999999999999999999988


Q ss_pred             CCCCCCCCCCcEEEccccccccccCC--CCCCCCCcEEEeecccccCcccccccccC-CcceeeccCcccccccchhhhc
Q 047190          336 SSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQLS-KLELLLLSGNSLRGVISEALFS  412 (1025)
Q Consensus       336 ~~~~~~~~~L~~L~L~~n~l~~~~p~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~  412 (1025)
                      +       +|++|++++|.+++.+|.  +..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+.++.. +.
T Consensus       318 ~-------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~  389 (768)
T 3rgz_A          318 S-------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LC  389 (768)
T ss_dssp             T-------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TT
T ss_pred             C-------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hh
Confidence            8       999999999999988885  89999999999999999999999999997 9999999999999888775 44


Q ss_pred             C--CCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccc
Q 047190          413 N--LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQL  490 (1025)
Q Consensus       413 ~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L  490 (1025)
                      .  +++|++|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.... +|
T Consensus       390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L  468 (768)
T 3rgz_A          390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TL  468 (768)
T ss_dssp             CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TC
T ss_pred             hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-Cc
Confidence            4  88999999999999999999999999999999999999999999999999999999999999999999988765 78


Q ss_pred             eEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190          491 YYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL  570 (1025)
Q Consensus       491 ~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~  570 (1025)
                      ++|++++|++++.+|....                                               .+++|++|++++|+
T Consensus       469 ~~L~L~~N~l~~~~p~~l~-----------------------------------------------~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLS-----------------------------------------------NCTNLNWISLSNNR  501 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGG-----------------------------------------------GCTTCCEEECCSSC
T ss_pred             eEEEecCCcccCcCCHHHh-----------------------------------------------cCCCCCEEEccCCc
Confidence            9988888888766553211                                               23667788888888


Q ss_pred             ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC---------
Q 047190          571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN---------  641 (1025)
Q Consensus       571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N---------  641 (1025)
                      +++.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+         
T Consensus       502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (768)
T 3rgz_A          502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND  581 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred             cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence            88788888888888888888888888888888888888888888888888888877776666555544331         


Q ss_pred             -------------cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccc
Q 047190          642 -------------GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK  708 (1025)
Q Consensus       642 -------------~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  708 (1025)
                                   .+.|..|..+. .++.++.+++..|.+.|.+|..+..+++|+.|||++|+++|.+|..+++++.|  
T Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--  658 (768)
T 3rgz_A          582 GMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--  658 (768)
T ss_dssp             SCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC--
T ss_pred             cccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC--
Confidence                         23455666665 57788888999999999999999999999999999999999999999988877  


Q ss_pred             ccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccc
Q 047190          709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLT  788 (1025)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  788 (1025)
                                                                   +.||||+|+++|.||..+++++.|++||||+|+++
T Consensus       659 ---------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          659 ---------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             ---------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ---------------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence                                                         88999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCc-cccc
Q 047190          789 GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNN-FSGK  838 (1025)
Q Consensus       789 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~-l~g~  838 (1025)
                      |.||..++.+++|++||||+|+++|.||.. ..+..+....+.+|+ |.|.
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             CcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            999999999999999999999999999975 344555566677886 4553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-63  Score=626.26  Aligned_cols=689  Identities=20%  Similarity=0.208  Sum_probs=434.4

Q ss_pred             EEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccC
Q 047190          116 YLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLAD  195 (1025)
Q Consensus       116 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~  195 (1025)
                      ..|.++++++.  +|.   ..++|++|+|++|.+++..|..|+++++|++|+|++|.......+..+.++++|++|+|++
T Consensus         8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             EEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            45555666663  454   3456777777777776666666777777777777766432211223334444444444444


Q ss_pred             CcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCC
Q 047190          196 CKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSN  275 (1025)
Q Consensus       196 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n  275 (1025)
                      |.++...  +..+.++                           ++|++|+|++|.++                       
T Consensus        83 N~l~~~~--p~~~~~l---------------------------~~L~~L~Ls~n~l~-----------------------  110 (844)
T 3j0a_A           83 SKIYFLH--PDAFQGL---------------------------FHLFELRLYFCGLS-----------------------  110 (844)
T ss_dssp             CCCCEEC--TTSSCSC---------------------------SSCCCEECTTCCCS-----------------------
T ss_pred             CcCcccC--HhHccCC---------------------------cccCEeeCcCCCCC-----------------------
Confidence            4333321  1122222                           33333333333333                       


Q ss_pred             CCCCCchhh--hhCCCCCcEEEccCCCCCCc--chhhcCCCCccEEEeecCCCCCcchHHhhhc--CCCCCCCCCCcEEE
Q 047190          276 QLHGSIPLA--FGHMASLRHLDLLSNQLREV--PKFLGNMSSLKRLVFSYNELRGELSEFIQNV--SSGSTKNSSLEWLY  349 (1025)
Q Consensus       276 ~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~~~~~~L~~L~  349 (1025)
                         +.+|..  |+++++|++|+|++|.++++  +..++++++|++|++++|.+.+..+..+..+  +       +|+.|+
T Consensus       111 ---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-------~L~~L~  180 (844)
T 3j0a_A          111 ---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-------TLSFFS  180 (844)
T ss_dssp             ---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-------SSCCCE
T ss_pred             ---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC-------ccceEE
Confidence               322222  45555666666666666552  2456666666666666666666666555554  3       666666


Q ss_pred             ccccccccccCC-CCCCCC------CcEEEeecccccCccccccccc---CCcceeeccCcccccccchhhhcCCCCCcE
Q 047190          350 LAFNEITGTIPD-LGGFPS------LQILSLENNRLTGTISKSIGQL---SKLELLLLSGNSLRGVISEALFSNLSSLDT  419 (1025)
Q Consensus       350 L~~n~l~~~~p~-l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~  419 (1025)
                      ++.|.+.+..|. ++.+++      |++|++++|.+++..+..+...   ++++.|.++.+.....              
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------  246 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------  246 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------------
Confidence            666666655543 333333      6777777776666666555432   4555666553332211              


Q ss_pred             EECCCCccccccccCCCCC--cccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccC
Q 047190          420 LQLSDNSLTLKFSHDWTPP--FQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSN  497 (1025)
Q Consensus       420 L~Ls~n~l~~~~~~~~~~~--~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~  497 (1025)
                        +..+.+.......+...  .+++.|++++|.+....+..+..+++|+.|++++|.+.+..|..|..+. +|++|++++
T Consensus       247 --~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~  323 (844)
T 3j0a_A          247 --FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSY  323 (844)
T ss_dssp             --SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEES
T ss_pred             --ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCC
Confidence              01112222222222221  3455555555555555666677777788888888887777777666554 677777777


Q ss_pred             ccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCC
Q 047190          498 NEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD  577 (1025)
Q Consensus       498 N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~  577 (1025)
                      |.+++..|..                                               ...+++|+.|++++|.+++..+.
T Consensus       324 N~l~~~~~~~-----------------------------------------------~~~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          324 NLLGELYSSN-----------------------------------------------FYGLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             CCCSCCCSCS-----------------------------------------------CSSCTTCCEEECCSCCCCCCCSS
T ss_pred             CCCCccCHHH-----------------------------------------------hcCCCCCCEEECCCCCCCccChh
Confidence            7665332211                                               01246788999999999888888


Q ss_pred             cccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190          578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN  657 (1025)
Q Consensus       578 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  657 (1025)
                      .|..+++|++|++++|.+++.     ..+++|+.|++++|+++. +|..   ..+++.|++++|++++.-.......+++
T Consensus       357 ~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~  427 (844)
T 3j0a_A          357 TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPH  427 (844)
T ss_dssp             CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred             hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCc
Confidence            899999999999999998743     237889999999999984 4443   5678999999999985322222336999


Q ss_pred             CcEEEeecCcCcccCcc-cccccCcccEEEcccccccccc-----CccccCccccccccccCcccccccccccccccccc
Q 047190          658 LVVLSLRSNKFHGNIPF-QLCYLSHIQILDLSLNNISGII-----PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLM  731 (1025)
Q Consensus       658 L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  731 (1025)
                      |++|+|++|++++..+. .+..+++|+.|+|++|.+++..     |..|..++                           
T Consensus       428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~---------------------------  480 (844)
T 3j0a_A          428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS---------------------------  480 (844)
T ss_dssp             CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC---------------------------
T ss_pred             cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcc---------------------------
Confidence            99999999999876543 4566899999999999998433     33344333                           


Q ss_pred             eeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcC
Q 047190          732 PLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF  811 (1025)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l  811 (1025)
                                          .|+.|||++|++++.+|..+.++++|+.|+|++|+|++.+|..+.  ++|+.|||++|++
T Consensus       481 --------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          481 --------------------HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL  538 (844)
T ss_dssp             --------------------CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred             --------------------cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence                                448899999999999999999999999999999999998888776  8999999999999


Q ss_pred             CCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q 047190          812 FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEESAPSPSRD--DAYYTPDDD  889 (1025)
Q Consensus       812 ~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C~~~~~~~~~~~~--~~~~~~~~~  889 (1025)
                      ++.+|..+.   .|+.|++++|++.|.++..    .|......+|..+||.+....|..+....+....  +...|.+..
T Consensus       539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~~~~  611 (844)
T 3j0a_A          539 LAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE  611 (844)
T ss_dssp             CCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC----
T ss_pred             CCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCchhhCCCccccCccccCCchh
Confidence            999998765   6889999999999987642    2221123457778888888889776654443221  112222211


Q ss_pred             CCcceeeeeeeeehhhhHHHH-hhhhheeecccccc-chhH-------------------------HHHHhhhheeehhh
Q 047190          890 GDQFITLGFYMSMILGFFVGF-WGVCGTLLVKSSWR-HGYY-------------------------NFLTRVKDWLYVEA  942 (1025)
Q Consensus       890 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~~~~~~~~~  942 (1025)
                      ...  ...+.+.+++++++++ ++++++++..+.|+ .||+                         .|..++.+||+.++
T Consensus       612 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~yd~fisy~~~d~~~v~~~l  689 (844)
T 3j0a_A          612 VLK--SLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNAL  689 (844)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTTSHHHHC----------------CCCGGGSSSCCCCSEEEECCSTTHHHHHHTH
T ss_pred             hcc--ccceehhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhccccccccccceeccEEEEeeCCcHHHHHHHH
Confidence            110  0111111111111111 11111111111111 1111                         22336889999999


Q ss_pred             hHHHHHH---HHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccccccCCcccccc
Q 047190          943 VVNIAKL---QRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQNSPQATMD 1006 (1025)
Q Consensus       943 ~~~l~~~---~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~~~~~~~~ 1006 (1025)
                      +++||+.   ++.+++|+|+|||           ++|++|||+|||+|++|++    ++|++++-.++.+.......|
T Consensus       690 ~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~----s~wc~~e~~~a~~~~~~~~~~  763 (844)
T 3j0a_A          690 LKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR----DGWCLEAFSYAQGRCLSDLNS  763 (844)
T ss_dssp             HHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH----HTSTTHHHHHHHSCCCCSSCT
T ss_pred             HHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc----ChHHHHHHHHHHHHHHHhcCC
Confidence            9999994   7889999999999           6999999999999999999    899999888886655544444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.2e-58  Score=565.42  Aligned_cols=609  Identities=23%  Similarity=0.231  Sum_probs=429.1

Q ss_pred             EEECCCCCCCCCCcccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCE
Q 047190           86 GLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV  165 (1025)
Q Consensus        86 ~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~  165 (1025)
                      .+|.++      ..++ .+|..+.  +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++
T Consensus         8 ~~~cs~------~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            8 VADCSH------LKLT-QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             EEECCS------SCCS-SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred             eeECCC------CCcc-ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence            466666      3343 4666554  7899999999999875 6677899999999999999999888889999999999


Q ss_pred             EecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE
Q 047190          166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID  245 (1025)
Q Consensus       166 L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  245 (1025)
                      |+|++|.+. ......++++++|++|++++|.+++++.  ..++++++|++|++++|.+.+..+..  +.++ ++|++|+
T Consensus        78 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l-~~L~~L~  151 (680)
T 1ziw_A           78 LNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGT--QVQL-ENLQELL  151 (680)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCS--SSCC-TTCCEEE
T ss_pred             EECCCCccC-ccChhhhccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchh--hccc-ccCCEEE
Confidence            999999863 2333458888888888888888877642  45778888888888888877766542  2333 7777777


Q ss_pred             ccCCCCCCCCchhhhhc--CCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhh---cCCCCccEEEe
Q 047190          246 LSNNYLTNSIYPWLFNV--SSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFL---GNMSSLKRLVF  319 (1025)
Q Consensus       246 Ls~n~l~~~~~~~l~~l--~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l---~~l~~L~~L~L  319 (1025)
                      +++|.+++..+..+...  ..  |++|++++|.+++..|..++.+++|+.|++.++.+.. ....+   ...++|+.|++
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L  229 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSS--LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL  229 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCE--ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred             ccCCcccccCHHHhhcccccc--ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence            77777776555554332  44  7777777777776666666667777777776666543 11111   12355556666


Q ss_pred             ecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeecc
Q 047190          320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLS  398 (1025)
Q Consensus       320 s~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  398 (1025)
                      ++|.+.+..|..+..+.     .++|++|++++|.+++..|. ++.+++|++|++++|++++..|..+..+++|++|+++
T Consensus       230 ~~n~l~~~~~~~~~~l~-----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          230 SNSQLSTTSNTTFLGLK-----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK  304 (680)
T ss_dssp             TTSCCCEECTTTTGGGG-----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred             cCCcccccChhHhhccC-----cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence            66655555555444432     01355555555555544433 4555555555555555554444445555555555554


Q ss_pred             CcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCc
Q 047190          399 GNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDI  478 (1025)
Q Consensus       399 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~  478 (1025)
                      +|...+.++..   .++                                     ......+..+++|+.|++++|.+.++
T Consensus       305 ~~~~~~~~~~~---~lp-------------------------------------~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          305 RSFTKQSISLA---SLP-------------------------------------KIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TCBCCC---------CC-------------------------------------EECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             chhhhcccccc---ccc-------------------------------------ccChhhcccCCCCCEEECCCCccCCC
Confidence            44333211100   000                                     00011344556666666666666666


Q ss_pred             hhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccC
Q 047190          479 VPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISS  558 (1025)
Q Consensus       479 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~  558 (1025)
                      .+..|..+. +|++|++++|.+.+..               +....+.                            ....
T Consensus       345 ~~~~~~~l~-~L~~L~Ls~n~~~~~~---------------l~~~~f~----------------------------~~~~  380 (680)
T 1ziw_A          345 KSNMFTGLI-NLKYLSLSNSFTSLRT---------------LTNETFV----------------------------SLAH  380 (680)
T ss_dssp             CTTTTTTCT-TCCEEECTTCBSCCCE---------------ECTTTTG----------------------------GGTT
T ss_pred             ChhHhcccc-CCcEEECCCCchhhhh---------------cchhhhc----------------------------cccc
Confidence            555555443 5666666666543210               0000000                            0012


Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCC-cccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP-DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      +.|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+..|..+++|+.|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            568999999999998889999999999999999999987666 6788999999999999999998899999999999999


Q ss_pred             CCCCcCc--cccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcc
Q 047190          638 LGKNGLS--GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS  715 (1025)
Q Consensus       638 Ls~N~l~--g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  715 (1025)
                      +++|.++  +.+|..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..-            
T Consensus       461 l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------  527 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG------------  527 (680)
T ss_dssp             CTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS------------
T ss_pred             hccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC------------
Confidence            9999987  56788877 79999999999999998888889999999999999999986543322110            


Q ss_pred             cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190          716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI  795 (1025)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  795 (1025)
                                                 ...+...++.|+.|||++|+++...+..|.++++|+.|+|++|++++..+..|
T Consensus       528 ---------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          528 ---------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             ---------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ---------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence                                       00011224455899999999997666679999999999999999998888889


Q ss_pred             CCCCCccEEeCCCCcCCCcCccccc-CCCCCCEEECcCCcccccCCC
Q 047190          796 GQLKSLDFLDLSRNHFFGGIPSSLS-RLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       796 ~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      ..+++|+.|||++|++++.+|..+. .+++|+.|++++|++.|.++.
T Consensus       581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999999999998887 789999999999999998775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.3e-55  Score=539.82  Aligned_cols=572  Identities=25%  Similarity=0.298  Sum_probs=386.5

Q ss_pred             CcEEEEECCCCCCCCCCcccccccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCC
Q 047190           82 GHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS  161 (1025)
Q Consensus        82 ~~v~~L~L~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~  161 (1025)
                      .+++.|+|++      +.+.+..+..|.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+..|++++
T Consensus        25 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTH------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT   97 (680)
T ss_dssp             TTCSEEECCS------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCcEEECCC------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence            5799999998      677776677899999999999999999986 789999999999999999999976666899999


Q ss_pred             CCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcc
Q 047190          162 KLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSL  241 (1025)
Q Consensus       162 ~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  241 (1025)
                      +|++|++++|.+ ....+..++++++|++|++++|.+++.+  +..+.++++|++|++++|.+++..+..+..... ++|
T Consensus        98 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L  173 (680)
T 1ziw_A           98 NLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSL  173 (680)
T ss_dssp             TCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT-CEE
T ss_pred             CCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhcccc-ccc
Confidence            999999999987 3344567899999999999999998753  356789999999999999999887654444444 899


Q ss_pred             cEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhh---CCCCCcEEEccCCCCCC-cchhhcCCCC--cc
Q 047190          242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG---HMASLRHLDLLSNQLRE-VPKFLGNMSS--LK  315 (1025)
Q Consensus       242 ~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~-lp~~l~~l~~--L~  315 (1025)
                      ++|++++|.+++..|..+..+..  |+.|+++++.+.+.....+.   ..++|+.|++++|.+++ .|..+.+++.  |+
T Consensus       174 ~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~  251 (680)
T 1ziw_A          174 KKLELSSNQIKEFSPGCFHAIGR--LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT  251 (680)
T ss_dssp             SEEECTTCCCCCBCTTGGGGSSE--ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred             cEEECCCCcccccChhhhhhhhh--hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence            99999999999988888988888  99999999988644333221   35899999999999998 6778887755  99


Q ss_pred             EEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCc-----ccc----c
Q 047190          316 RLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGT-----ISK----S  385 (1025)
Q Consensus       316 ~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~-----~p~----~  385 (1025)
                      +|++++|.+.+..+..+..++       +|++|++++|.+++..|. +..+++|++|++++|...+.     +|.    .
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          252 MLDLSYNNLNVVGNDSFAWLP-------QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             EEECTTSCCCEECTTTTTTCT-------TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred             EEECCCCCcCccCcccccCcc-------cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence            999999999988888888777       999999999999988875 99999999999998765542     222    4


Q ss_pred             ccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhc--CC
Q 047190          386 IGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS--QN  463 (1025)
Q Consensus       386 l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~--~~  463 (1025)
                      +..+++|++|++++|.+.+..+. .|.++++|++|++++|.+......                      ...+..  .+
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~----------------------~~~f~~~~~~  381 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLT----------------------NETFVSLAHS  381 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEEC----------------------TTTTGGGTTS
T ss_pred             cccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcc----------------------hhhhcccccC
Confidence            55666677777777766654333 366666666666666654311000                      000111  12


Q ss_pred             cccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccC
Q 047190          464 QTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSK  543 (1025)
Q Consensus       464 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~  543 (1025)
                      .|+.|++++|.+.++.|..|..+                                                         
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l---------------------------------------------------------  404 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWL---------------------------------------------------------  404 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTC---------------------------------------------------------
T ss_pred             cCceEECCCCCCCeEChhhhhCC---------------------------------------------------------
Confidence            33444444444433333332222                                                         


Q ss_pred             CcccccccccccccCCcccEEEccCccccccCC-CcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--
Q 047190          544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLP-DCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--  620 (1025)
Q Consensus       544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--  620 (1025)
                                     ++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.  
T Consensus       405 ---------------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          405 ---------------GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             ---------------TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             ---------------CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence                           334444444444443332 33444444444444444444444444444444444444444443  


Q ss_pred             ccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccC--------cccccccCcccEEEcccccc
Q 047190          621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI--------PFQLCYLSHIQILDLSLNNI  692 (1025)
Q Consensus       621 ~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l  692 (1025)
                      +..|..|.++++|++|++++|++++ +|...+..+++|++|+|++|++++..        +..+.++++|++|+|++|++
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             ccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            2344444445555555555555542 22222224455555555555544321        12255666666666666666


Q ss_pred             ccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHh
Q 047190          693 SGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM  772 (1025)
Q Consensus       693 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~  772 (1025)
                      +...+..|+.+++|                                               +.|||++|++++..+..|.
T Consensus       549 ~~i~~~~~~~l~~L-----------------------------------------------~~L~Ls~N~l~~l~~~~~~  581 (680)
T 1ziw_A          549 DEIPVEVFKDLFEL-----------------------------------------------KIIDLGLNNLNTLPASVFN  581 (680)
T ss_dssp             CCCCTTTTTTCTTC-----------------------------------------------CEEECCSSCCCCCCTTTTT
T ss_pred             CCCCHHHcccccCc-----------------------------------------------ceeECCCCCCCcCCHhHhC
Confidence            63333345554444                                               5666666666665556666


Q ss_pred             hcccCCeEeccCccccccCCCCCC-CCCCccEEeCCCCcCCCcCc
Q 047190          773 DLVGLVALNLSNNNLTGQITPRIG-QLKSLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       773 ~l~~L~~L~Ls~N~l~g~ip~~~~-~l~~L~~LdLs~N~l~g~ip  816 (1025)
                      ++++|+.|+|++|++++.+|..++ .+++|+.|+|++|.+.+.-+
T Consensus       582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            667777777777777766666565 56677777777777765543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-52  Score=509.17  Aligned_cols=532  Identities=20%  Similarity=0.186  Sum_probs=365.0

Q ss_pred             cccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhc
Q 047190          103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL  182 (1025)
Q Consensus       103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l  182 (1025)
                      .+|..+..  ++++|+|++|.+++. .|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.+. ...+..+
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~  101 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL  101 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred             cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence            45555543  789999999999975 6888999999999999999999888999999999999999999863 3345567


Q ss_pred             ccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhc
Q 047190          183 SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNV  262 (1025)
Q Consensus       183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  262 (1025)
                      +++++|++|++++|.++.++.  ..++++++|++|++++|.+.+....                           .+..+
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------~~~~l  152 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLP---------------------------KGFPT  152 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCC---------------------------TTCCC
T ss_pred             cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcc---------------------------cccCC
Confidence            888888888888888777522  3356666666666666666554322                           12223


Q ss_pred             CCCCccEEEcCCCCCCCCchhhhhCCCCCc--EEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCC
Q 047190          263 SSNLVDHIDLGSNQLHGSIPLAFGHMASLR--HLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGST  340 (1025)
Q Consensus       263 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~--~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~  340 (1025)
                      ++  |++|++++|.+++..+..++.+++|+  .|++++|.++++++......+|+.|++++|.   .++..+..+.    
T Consensus       153 ~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~----  223 (606)
T 3t6q_A          153 EK--LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLK----  223 (606)
T ss_dssp             TT--CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTT----
T ss_pred             cc--cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhcc----
Confidence            33  55555555555555566666666666  6777777777644444444667777777765   3445555544    


Q ss_pred             CCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEE
Q 047190          341 KNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTL  420 (1025)
Q Consensus       341 ~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L  420 (1025)
                         +++...+....+.          .+....+...     ....+.. .+|+.|++++|.+.+..+ ..|..+++|++|
T Consensus       224 ---~~~l~~l~~~~~~----------~~~~~~i~~~-----~~~~l~~-~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L  283 (606)
T 3t6q_A          224 ---NSTIQSLWLGTFE----------DMDDEDISPA-----VFEGLCE-MSVESINLQKHYFFNISS-NTFHCFSGLQEL  283 (606)
T ss_dssp             ---TCEEEEEECCCCT----------TSCCCCCCGG-----GGGGGGG-SEEEEEECTTCCCSSCCT-TTTTTCTTCSEE
T ss_pred             ---ccchhheechhhc----------cccccccChh-----Hhchhhc-CceeEEEeecCccCccCH-HHhccccCCCEE
Confidence               3433333222111          1111111111     1111111 156666666666664333 346666666666


Q ss_pred             ECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccC
Q 047190          421 QLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEM  500 (1025)
Q Consensus       421 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l  500 (1025)
                      ++++|.++                         .+|..+..+++|+.|++++|.+.+..|..+..+              
T Consensus       284 ~l~~n~l~-------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------  324 (606)
T 3t6q_A          284 DLTATHLS-------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF--------------  324 (606)
T ss_dssp             ECTTSCCS-------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC--------------
T ss_pred             eccCCccC-------------------------CCChhhcccccCCEEECccCCcCcCchhhhhcc--------------
Confidence            66666554                         234445555566666666665555544443322              


Q ss_pred             CCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCC-cc
Q 047190          501 KGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD-CW  579 (1025)
Q Consensus       501 ~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~  579 (1025)
                                                                                ++|++|++++|.+.+.+|. .+
T Consensus       325 ----------------------------------------------------------~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          325 ----------------------------------------------------------PSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             ----------------------------------------------------------TTCSEEECCSCSSCCBCCSSTT
T ss_pred             ----------------------------------------------------------CcCCEEECCCCCcccccchhhh
Confidence                                                                      3455555555555544433 36


Q ss_pred             cCCCCCCEEEcCCCcccccC--CcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190          580 FQFDSLAILNLANNSFFGEI--PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN  657 (1025)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  657 (1025)
                      ..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..|..+++|+.|++++|++++..|...+..+++
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            66677777777777776554  5667777777777777777777777777777888888888888776666553346788


Q ss_pred             CcEEEeecCcCcccCcccccccCcccEEEcccccccccc---CccccCccccccccccCcccccccccccccccccceeE
Q 047190          658 LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGII---PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLI  734 (1025)
Q Consensus       658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (1025)
                      |++|++++|.+.+..|..+..+++|++|++++|++++..   +..++.+++|                            
T Consensus       427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L----------------------------  478 (606)
T 3t6q_A          427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL----------------------------  478 (606)
T ss_dssp             CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC----------------------------
T ss_pred             CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc----------------------------
Confidence            888888888888777888888888888888888887632   2334444444                            


Q ss_pred             eecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCc
Q 047190          735 FFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~  814 (1025)
                                         +.|+|++|++++.+|..++++++|+.|+|++|++++.+|..++.++.| .|||++|++++.
T Consensus       479 -------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          479 -------------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             -------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             -------------------cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence                               888999999998889999999999999999999999999999999999 999999999999


Q ss_pred             CcccccCCCCCCEEECcCCcccccCCC
Q 047190          815 IPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       815 ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      +|..+..+++|+.|++++|++.|.++.
T Consensus       539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999999999998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7e-53  Score=513.20  Aligned_cols=290  Identities=17%  Similarity=0.261  Sum_probs=181.6

Q ss_pred             CCHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCCCCCcc---cceEecCCCCcEEEEECCCCCCCCCCccccc
Q 047190           35 CLDEEKESLLAFKQGLIDES--------GILSSWGREDEKRNCCKW---RGVRCSNKTGHVLGLDLRASSDSPVDALKGT  103 (1025)
Q Consensus        35 ~~~~~~~~ll~~k~~~~~~~--------~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~  103 (1025)
                      ....|++||.++++++.++.        ...++|+   .+.+||.|   .||+|+.. |||++|+|++      .++.|.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~------~~l~g~   96 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG------FGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT------SCCEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC------cccCCc
Confidence            44679999999999986442        2345797   47899999   99999754 8999999999      789999


Q ss_pred             ccccCcCCCCCcEEEccCCCCC------C-----CCCcccccCcccccccccccccCCCCcchhccCC-CCCCEEecccC
Q 047190          104 INPSLLKLQHLTYLDLSWNNFS------G-----SPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNL-SKLQVLDLRFN  171 (1025)
Q Consensus       104 l~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L-~~L~~L~Ls~n  171 (1025)
                      +|++++++++|++|+|++|.+.      +     ..+|...  +..|+ +++++|.+.+.+|..+..+ .++..+++...
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~  173 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK  173 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence            9999999999999999999761      1     0244444  66778 8888888888777665421 11222222111


Q ss_pred             CCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEE--ccCC
Q 047190          172 NLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID--LSNN  249 (1025)
Q Consensus       172 ~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~--Ls~n  249 (1025)
                      .+                         ...        ..                           ..++.+.  ...|
T Consensus       174 ~~-------------------------~~~--------~~---------------------------~~l~~l~l~~~~n  193 (636)
T 4eco_A          174 SI-------------------------KKS--------SR---------------------------ITLKDTQIGQLSN  193 (636)
T ss_dssp             CC-------------------------CCC--------CC---------------------------CCCCTTTTTCCSC
T ss_pred             cc-------------------------ccc--------cc---------------------------cchhhhhhccccC
Confidence            10                         000        00                           0011111  1134


Q ss_pred             CCCCCCchhhhhcCCCCccEEEcCCCCCCCC-----------------chhhhh--CCCCCcEEEccCCCCCC-cchhhc
Q 047190          250 YLTNSIYPWLFNVSSNLVDHIDLGSNQLHGS-----------------IPLAFG--HMASLRHLDLLSNQLRE-VPKFLG  309 (1025)
Q Consensus       250 ~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~-lp~~l~  309 (1025)
                      .+++ +|..++++++  |++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+ +|..++
T Consensus       194 ~l~~-ip~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          194 NITF-VSKAVMRLTK--LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             EEEE-ECGGGGGCTT--CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCcc-CCHHHhcccC--CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            5555 5666666666  66666666666664                 676766  77777777777777666 777777


Q ss_pred             CCCCccEEEeecCC-CCC-cchHHhhhcCCCCCCCCCCcEEEccccccccccCC---CCCCCCCcEEEeecccccCcccc
Q 047190          310 NMSSLKRLVFSYNE-LRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD---LGGFPSLQILSLENNRLTGTISK  384 (1025)
Q Consensus       310 ~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~---l~~l~~L~~L~L~~n~l~~~~p~  384 (1025)
                      ++++|++|++++|. +++ .+|..+..+. ....+++|++|++++|.++ .+|.   ++.+++|++|++++|+++|.+| 
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALA-DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHH-HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhh-ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            77777777777776 776 6776666541 0000115666666666655 3333   5555555555555555555555 


Q ss_pred             cccccCCcceeeccCcccc
Q 047190          385 SIGQLSKLELLLLSGNSLR  403 (1025)
Q Consensus       385 ~l~~l~~L~~L~L~~N~l~  403 (1025)
                      .++.+++|++|++++|.+.
T Consensus       348 ~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE
T ss_pred             hhCCCCCCCEEECCCCccc
Confidence            4555555555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6e-51  Score=496.68  Aligned_cols=528  Identities=20%  Similarity=0.192  Sum_probs=343.4

Q ss_pred             cccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhc
Q 047190          103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWL  182 (1025)
Q Consensus       103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l  182 (1025)
                      .+|..+.  ++|++|+|++|.+++. .+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+ ....+..+
T Consensus        25 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~  100 (606)
T 3vq2_A           25 KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSF  100 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSS
T ss_pred             cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-cccChhhc
Confidence            3454443  6788888888888764 556778888888888888888876677788888888888888775 22334556


Q ss_pred             ccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCC-CCchhhhh
Q 047190          183 SYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN-SIYPWLFN  261 (1025)
Q Consensus       183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~  261 (1025)
                      +++++|++|++++|.++..+.  ..++++                           ++|++|++++|.+.+ .+|..+.+
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l---------------------------~~L~~L~L~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLES--FPIGQL---------------------------ITLKKLNVAHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSS--SCCTTC---------------------------TTCCEEECCSSCCCCCCCCGGGGT
T ss_pred             CCcccCCEEEccCCccccccc--cccCCC---------------------------CCCCEEeCCCCcccceechHhHhh
Confidence            666666666666666655432  123444                           555555555555543 34566666


Q ss_pred             cCCCCccEEEcCCCCCCCCchhhhhCCCCC----cEEEccCCCCCCcchhhcCCCCccEEEeecCCCC-CcchHHhhhcC
Q 047190          262 VSSNLVDHIDLGSNQLHGSIPLAFGHMASL----RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR-GELSEFIQNVS  336 (1025)
Q Consensus       262 l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L----~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~  336 (1025)
                      +++  |++|++++|.+++..+..++.+++|    ++|++++|.++++|.......+|++|++++|.+. +..|..+..++
T Consensus       152 l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  229 (606)
T 3vq2_A          152 LTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA  229 (606)
T ss_dssp             CTT--CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTT
T ss_pred             cCC--CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccc
Confidence            666  6667777666666656656555444    3778888877776655545557888888888776 34566666666


Q ss_pred             CCCCCCCCCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeec-cCcccccccchhhhcCCC
Q 047190          337 SGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLL-SGNSLRGVISEALFSNLS  415 (1025)
Q Consensus       337 ~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~N~l~~~~~~~~~~~l~  415 (1025)
                             +|+.+++..+.+.+..       .+..       +....+..+..+ .++.+++ ..|.+.+.++.  +..++
T Consensus       230 -------~L~~l~l~~~~~~~~~-------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~  285 (606)
T 3vq2_A          230 -------GLHVHRLILGEFKDER-------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLA  285 (606)
T ss_dssp             -------TCEEEEEEEECCTTSC-------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGT
T ss_pred             -------ccccccccccccccCC-------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCC
Confidence                   7777776654433210       0000       011111122222 3444444 44444444443  44555


Q ss_pred             CCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEc
Q 047190          416 SLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNL  495 (1025)
Q Consensus       416 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L  495 (1025)
                      +|+.|++++|.+..                         +| ++..+++                         |++|++
T Consensus       286 ~L~~L~l~~~~~~~-------------------------l~-~l~~~~~-------------------------L~~L~l  314 (606)
T 3vq2_A          286 NVSAMSLAGVSIKY-------------------------LE-DVPKHFK-------------------------WQSLSI  314 (606)
T ss_dssp             TCSEEEEESCCCCC-------------------------CC-CCCTTCC-------------------------CSEEEE
T ss_pred             CCCEEEecCccchh-------------------------hh-hcccccc-------------------------CCEEEc
Confidence            55555555544431                         11 1222222                         333333


Q ss_pred             cCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccC
Q 047190          496 SNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRL  575 (1025)
Q Consensus       496 s~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  575 (1025)
                      ++|.+ +.+|.+                                                 .+++|+.|++++|...+.+
T Consensus       315 ~~n~l-~~lp~~-------------------------------------------------~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          315 IRCQL-KQFPTL-------------------------------------------------DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             ESCCC-SSCCCC-------------------------------------------------CCSSCCEEEEESCSSCEEC
T ss_pred             ccccC-cccccC-------------------------------------------------CCCccceeeccCCcCccch
Confidence            33322 111100                                                 1234555555555433332


Q ss_pred             CCcccCCCCCCEEEcCCCccccc--CCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhh
Q 047190          576 PDCWFQFDSLAILNLANNSFFGE--IPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE  653 (1025)
Q Consensus       576 p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  653 (1025)
                        .+..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...+.
T Consensus       345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred             --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence              344566666667766666654  35666667777777777777664 4466777778888888888877666633333


Q ss_pred             cCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc-ccCccccCccccccccccCcccccccccccccccccce
Q 047190          654 SLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG-IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP  732 (1025)
Q Consensus       654 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  732 (1025)
                      .+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..++.+++|                          
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------------  475 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------------  475 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--------------------------
Confidence            67888888888888888888888888888888888888887 467777776666                          


Q ss_pred             eEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190          733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  812 (1025)
                                           +.|||++|++++.+|..++++++|++|+|++|++++.+|..++.+++|++|||++|+++
T Consensus       476 ---------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          476 ---------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             ---------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             ---------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence                                 78889999998888888999999999999999999999999999999999999999999


Q ss_pred             CcCcccccCCC-CCCEEECcCCcccccCCC
Q 047190          813 GGIPSSLSRLR-LLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       813 g~ip~~l~~l~-~L~~Ldls~N~l~g~ip~  841 (1025)
                       .+|..+..++ +|++|++++|++.|.+|.
T Consensus       535 -~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          535 -TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             -CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             -ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence             5777798886 699999999999998775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.1e-51  Score=497.32  Aligned_cols=514  Identities=21%  Similarity=0.201  Sum_probs=365.1

Q ss_pred             CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEE
Q 047190          239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRL  317 (1025)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L  317 (1025)
                      +.+++|++++|.+++..|..+..+++  |++|++++|.+.+..|.+|+++++|++|++++|.+++ .|..++++++|++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLIN--LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTT--CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCcc--ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            45666666666666555556666666  6666666666666666666666666666666666666 35566666666666


Q ss_pred             EeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccc-cCCCCCCCCCcEEEeecccccCcccccccccCCcc--e
Q 047190          318 VFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT-IPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLE--L  394 (1025)
Q Consensus       318 ~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~-~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~  394 (1025)
                      ++++|.+++..+..+..++       +|++|++++|.+++. .|.+..+++|++|++++|++++..+..++.+++|+  .
T Consensus       111 ~L~~n~i~~l~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~  183 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQK-------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS  183 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCT-------TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred             eccccCcccCCcchhccCC-------cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence            6666666655444444444       666666666666542 24444466666666666666655555566666666  5


Q ss_pred             eeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCC-
Q 047190          395 LLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA-  473 (1025)
Q Consensus       395 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n-  473 (1025)
                      |++++|.+.+..+.. + ...+|++|++++|.                           ..+..+..+..+....+.-. 
T Consensus       184 L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~---------------------------~~~~~~~~l~~~~l~~l~~~~  234 (606)
T 3t6q_A          184 LNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQ---------------------------NLLVIFKGLKNSTIQSLWLGT  234 (606)
T ss_dssp             EECTTCCCCEECTTT-T-TTCEEEEEECTTCS---------------------------CHHHHHHHTTTCEEEEEECCC
T ss_pred             EecCCCccCccChhH-h-hhccccccccCCch---------------------------hHHHHhhhccccchhheechh
Confidence            666666666544432 2 23455566655553                           12223333332222221111 


Q ss_pred             ----CCCCchhhhhhhccc-cceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccc
Q 047190          474 ----GISDIVPDWFWDLTN-QLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSG  548 (1025)
Q Consensus       474 ----~i~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~  548 (1025)
                          ....+.+..+.+... +|+.|++++|.+++..+...                      ..+++|++|++++|+++.
T Consensus       235 ~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~----------------------~~l~~L~~L~l~~n~l~~  292 (606)
T 3t6q_A          235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF----------------------HCFSGLQELDLTATHLSE  292 (606)
T ss_dssp             CTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT----------------------TTCTTCSEEECTTSCCSC
T ss_pred             hccccccccChhHhchhhcCceeEEEeecCccCccCHHHh----------------------ccccCCCEEeccCCccCC
Confidence                111122222222211 46666666666653322110                      113456666666666653


Q ss_pred             cccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcc-cccccCCCEEEcccCcccccC--Cc
Q 047190          549 SISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDS-MSFLRSIGSLSLYNNSLSGGL--PS  625 (1025)
Q Consensus       549 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~--p~  625 (1025)
                      .....  ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..  +.
T Consensus       293 lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          293 LPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             CCSSC--CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             CChhh--cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence            32222  23578999999999999888899999999999999999998777654 889999999999999999876  77


Q ss_pred             cccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccc-ccccCcccEEEccccccccccCccccCcc
Q 047190          626 FFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQ-LCYLSHIQILDLSLNNISGIIPKCFHNFT  704 (1025)
Q Consensus       626 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  704 (1025)
                      .+..+++|++|++++|++++..|..+. .+++|++|++++|++.+..|.. +..+++|+.|++++|.+++..|..++.++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  449 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP  449 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence            899999999999999999977777776 7999999999999999887654 89999999999999999999898888777


Q ss_pred             ccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCc---ChhhHhhcccCCeEe
Q 047190          705 AMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK---VLEEIMDLVGLVALN  781 (1025)
Q Consensus       705 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~---ip~~~~~l~~L~~L~  781 (1025)
                      +|                                               +.|++++|++++.   .+..+..+++|++|+
T Consensus       450 ~L-----------------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          450 AL-----------------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             TC-----------------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             CC-----------------------------------------------CEEECCCCCCCccccccchhhccCCCccEEE
Confidence            76                                               8899999999873   346799999999999


Q ss_pred             ccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCCCcCCCCcCCCCCCC
Q 047190          782 LSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELC  860 (1025)
Q Consensus       782 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~~~~~~~~~gN~~lc  860 (1025)
                      |++|++++.+|..|+.+++|+.|||++|++++.+|..+.+++.| +||+++|++++.+|.. ..+..+....+.|||+.|
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            99999999999999999999999999999999999999999999 9999999999887764 334445556689999999


Q ss_pred             CCC
Q 047190          861 GLP  863 (1025)
Q Consensus       861 g~~  863 (1025)
                      .|+
T Consensus       562 ~c~  564 (606)
T 3t6q_A          562 TCS  564 (606)
T ss_dssp             SGG
T ss_pred             cCC
Confidence            764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-50  Score=508.71  Aligned_cols=518  Identities=22%  Similarity=0.233  Sum_probs=369.1

Q ss_pred             CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCc-hhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccE
Q 047190          239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSI-PLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKR  316 (1025)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~  316 (1025)
                      ++|++|+|++|.+++..+..+..+..  |++|+|++|...+.+ |.+|+++++|++|+|++|.+++ .|..|+++++|++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~--L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQ--LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCS--CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCcCEEECCCCcCCccChhHCccccc--CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            56666666666666655666666666  677777666554444 5666777777777777777766 4666777777777


Q ss_pred             EEeecCCCCCcchHH--hhhcCCCCCCCCCCcEEEccccccccccCC--CCCCCCCcEEEeecccccCccccccccc--C
Q 047190          317 LVFSYNELRGELSEF--IQNVSSGSTKNSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTGTISKSIGQL--S  390 (1025)
Q Consensus       317 L~Ls~n~l~~~~~~~--~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~  390 (1025)
                      |+|++|.+.+.++..  +..++       +|++|+|++|.+++..+.  ++++++|++|++++|.+++..+..+..+  +
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~-------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLK-------ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCS-------SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             eeCcCCCCCcccccCccccccC-------CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence            777777766654432  44444       677777777776655442  6667777777777777766666666665  6


Q ss_pred             CcceeeccCcccccccchhhhcCCCC------CcEEECCCCccccccccCCCC---CcccceeeccCCCCCCCCchhhhc
Q 047190          391 KLELLLLSGNSLRGVISEALFSNLSS------LDTLQLSDNSLTLKFSHDWTP---PFQLFNIFLGSCKIGPRFPKWLQS  461 (1025)
Q Consensus       391 ~L~~L~L~~N~l~~~~~~~~~~~l~~------L~~L~Ls~n~l~~~~~~~~~~---~~~L~~L~L~~~~l~~~~p~~l~~  461 (1025)
                      +|+.|++++|.+.+..+.. +..+++      |++|++++|.+.+..+..+..   ..+++.+.+..+....        
T Consensus       175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~--------  245 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA--------  245 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC--------
T ss_pred             ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc--------
Confidence            6777777777766655442 333333      666666666555443333221   1234444443222111        


Q ss_pred             CCcccEEEccCCCCCCchhhhhhhc-cccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceee
Q 047190          462 QNQTVALDVSNAGISDIVPDWFWDL-TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLN  540 (1025)
Q Consensus       462 ~~~L~~L~Ls~n~i~~~~~~~~~~~-~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~  540 (1025)
                             +...+.+.+..+..|.+. .++|+.|++++|.+.+..|...                      ..+++|+.|+
T Consensus       246 -------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~----------------------~~l~~L~~L~  296 (844)
T 3j0a_A          246 -------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF----------------------ETLKDLKVLN  296 (844)
T ss_dssp             -------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS----------------------SSCCCCCEEE
T ss_pred             -------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhh----------------------hcCCCCCEEE
Confidence                   012333444444444443 2367777777777764332211                      1245677777


Q ss_pred             ccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc
Q 047190          541 LSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS  620 (1025)
Q Consensus       541 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  620 (1025)
                      +++|++.+..+... ..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus       297 L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          297 LAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             EESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            77777766554322 24678999999999999888999999999999999999999888888999999999999999998


Q ss_pred             ccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccC-cccccccCcccEEEccccccccccCcc
Q 047190          621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI-PFQLCYLSHIQILDLSLNNISGIIPKC  699 (1025)
Q Consensus       621 ~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~  699 (1025)
                      +.     ..+++|+.|++++|+++ .+|..    ..+++.|++++|++++.. +..+..+++|+.|+|++|++++..+..
T Consensus       376 ~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          376 TI-----HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             CC-----SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             cc-----cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            53     23789999999999998 77754    567999999999998753 234668999999999999999664432


Q ss_pred             -ccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCC-----CcChhhHhh
Q 047190          700 -FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG-----GKVLEEIMD  773 (1025)
Q Consensus       700 -~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~-----~~ip~~~~~  773 (1025)
                       +..+                                               +.|+.|+|++|.++     +..|..|.+
T Consensus       446 ~~~~~-----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  478 (844)
T 3j0a_A          446 TPSEN-----------------------------------------------PSLEQLFLGENMLQLAWETELCWDVFEG  478 (844)
T ss_dssp             SSCSC-----------------------------------------------TTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred             ccccC-----------------------------------------------CccccccCCCCccccccccccchhhhcC
Confidence             2222                                               33488999999997     555677899


Q ss_pred             cccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCc
Q 047190          774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTY  853 (1025)
Q Consensus       774 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~  853 (1025)
                      +++|++|+|++|+|++.+|..|+.+++|+.|||++|+|++..|..+.  ++|+.||+++|+++|.+|..  +..+....+
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l  554 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDI  554 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEE
T ss_pred             cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEe
Confidence            99999999999999999999999999999999999999998888777  89999999999999999964  445666668


Q ss_pred             CCCCCCCCCCCC
Q 047190          854 AGNPELCGLPLP  865 (1025)
Q Consensus       854 ~gN~~lcg~~~~  865 (1025)
                      .|||+.|+|+..
T Consensus       555 ~~Np~~C~c~~~  566 (844)
T 3j0a_A          555 THNKFICECELS  566 (844)
T ss_dssp             EEECCCCSSSCC
T ss_pred             cCCCcccccccH
Confidence            999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.2e-50  Score=489.22  Aligned_cols=526  Identities=18%  Similarity=0.166  Sum_probs=383.3

Q ss_pred             cEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCc-chhhcCCCCccEEEee
Q 047190          242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFS  320 (1025)
Q Consensus       242 ~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls  320 (1025)
                      ++++.+++.++. +|..+.  ..  +++|++++|.+++..+..|+++++|++|++++|.++++ |..|.++++|++|+++
T Consensus        14 ~~~~c~~~~l~~-ip~~~~--~~--l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           14 ITYQCMDQKLSK-VPDDIP--SS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TEEECTTSCCSS-CCTTSC--TT--CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CceEccCCCccc-CCCCCC--CC--cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            345555555542 444332  23  66666666666666666666777777777777777663 4566677777777777


Q ss_pred             cCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCCCCCcEEEeecccccC-cccccccccCCcceeecc
Q 047190          321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLS  398 (1025)
Q Consensus       321 ~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~  398 (1025)
                      +|.+++..|..+..++       +|++|++++|.+++..+. ++.+++|++|++++|.+++ .+|..++++++|++|+++
T Consensus        89 ~n~l~~~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLT-------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             TCCCCCCCTTSSTTCT-------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             CCcccccChhhcCCcc-------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            7777666666666655       677777777777655433 6777777777777777765 456777777777777777


Q ss_pred             CcccccccchhhhcCCCCC----cEEECCCCccccccccCCCCCcccceeeccCCCCC-CCCchhhhcCCcccEEEccCC
Q 047190          399 GNSLRGVISEALFSNLSSL----DTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIG-PRFPKWLQSQNQTVALDVSNA  473 (1025)
Q Consensus       399 ~N~l~~~~~~~~~~~l~~L----~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~-~~~p~~l~~~~~L~~L~Ls~n  473 (1025)
                      +|.+++..+. .++.+++|    .+|++++|.++...+..+... +|+.|++++|.+. ...|.++.+++.++.+++..+
T Consensus       162 ~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~  239 (606)
T 3vq2_A          162 YNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG  239 (606)
T ss_dssp             SSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCcceecChh-hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence            7777654443 24444433    367777777765554444433 5666666666654 345666677777766666433


Q ss_pred             CCCC------chhhhhhhccc-cceEEEc-cCccCCCCCCCccccccCCCCeeecccCcCccCCCC--CCCCCceeeccC
Q 047190          474 GISD------IVPDWFWDLTN-QLYYLNL-SNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPL--LPPNVSSLNLSK  543 (1025)
Q Consensus       474 ~i~~------~~~~~~~~~~~-~L~~L~L-s~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~--~~~~L~~L~l~~  543 (1025)
                      .+.+      ..+..+.+... .++.+++ ..|.+.                         +.+|.  .+++|+.|++++
T Consensus       240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~-------------------------~~~~~~~~l~~L~~L~l~~  294 (606)
T 3vq2_A          240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS-------------------------DDIVKFHCLANVSAMSLAG  294 (606)
T ss_dssp             CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC-------------------------GGGGSCGGGTTCSEEEEES
T ss_pred             ccccCCcccccChHHhhhhhhccHhheecccccccc-------------------------ccccccccCCCCCEEEecC
Confidence            3221      11111211110 2344444 333333                         33332  246788888888


Q ss_pred             CcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccccc-
Q 047190          544 NKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG-  622 (1025)
Q Consensus       544 n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-  622 (1025)
                      |.+....   ....+++|+.|++++|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|++++. 
T Consensus       295 ~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~  366 (606)
T 3vq2_A          295 VSIKYLE---DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG  366 (606)
T ss_dssp             CCCCCCC---CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred             ccchhhh---hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence            8876543   222467899999999999 5788 45 8999999999999766554  567899999999999999876 


Q ss_pred             -CCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccc
Q 047190          623 -LPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCF  700 (1025)
Q Consensus       623 -~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~  700 (1025)
                       .|..+..+++|++|++++|.++ .+|..+. .+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+
T Consensus       367 ~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  444 (606)
T 3vq2_A          367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF  444 (606)
T ss_dssp             ECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             chhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence             4888999999999999999998 5776666 69999999999999998888 689999999999999999999999888


Q ss_pred             cCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCC-cChhhHhhcccCCe
Q 047190          701 HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGG-KVLEEIMDLVGLVA  779 (1025)
Q Consensus       701 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~-~ip~~~~~l~~L~~  779 (1025)
                      +.+++|                                               +.|++++|++++ .+|..++.+++|++
T Consensus       445 ~~l~~L-----------------------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~  477 (606)
T 3vq2_A          445 LGLTSL-----------------------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTF  477 (606)
T ss_dssp             TTCTTC-----------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cCCCCC-----------------------------------------------CEEECCCCcCCCcchHHhhccCCCCCE
Confidence            887776                                               889999999998 47899999999999


Q ss_pred             EeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCC-CcCCCCcCCCC
Q 047190          780 LNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQ-RFGASTYAGNP  857 (1025)
Q Consensus       780 L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~-~~~~~~~~gN~  857 (1025)
                      |+|++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|+.||+++|+++ .+|.. ..+. .+....+.|||
T Consensus       478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence            999999999999999999999999999999999999999999999999999999999 56764 2222 24445689999


Q ss_pred             CCCCCCC
Q 047190          858 ELCGLPL  864 (1025)
Q Consensus       858 ~lcg~~~  864 (1025)
                      +.|+|+.
T Consensus       557 ~~c~c~~  563 (606)
T 3vq2_A          557 VACICEH  563 (606)
T ss_dssp             CCCSSTT
T ss_pred             cccCCcc
Confidence            9998865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-48  Score=480.43  Aligned_cols=517  Identities=19%  Similarity=0.208  Sum_probs=268.7

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--Ccc------------cceEecCCCCcEEEEECCCCCCCC
Q 047190           33 ISCLDEEKESLLAFKQGLIDESGILSSWGRED--EKRNC--CKW------------RGVRCSNKTGHVLGLDLRASSDSP   96 (1025)
Q Consensus        33 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~L~L~~~~~~~   96 (1025)
                      ..+..+|++||++||+++.+|     +|+.++  ...+|  |.|            .||+|+. .+||++|+|++     
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-----  332 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-----  332 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence            356678999999999999876     797421  01244  999            9999985 68999999999     


Q ss_pred             CCcccccccccCcCCCCCcEEEc-cCCCCCCCCCcccccCc---------cccccccc-------ccccCCCCc------
Q 047190           97 VDALKGTINPSLLKLQHLTYLDL-SWNNFSGSPIPEFIGSL---------GKLSELAL-------SSAQFAGPI------  153 (1025)
Q Consensus        97 ~~~l~g~l~~~l~~l~~L~~L~L-s~n~l~~~~~p~~l~~l---------~~L~~L~L-------s~n~l~~~~------  153 (1025)
                       .++.|.+|++|++|++|++|+| ++|.++|. .|-.....         ..++....       ....+.+.+      
T Consensus       333 -~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~  410 (876)
T 4ecn_A          333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR  410 (876)
T ss_dssp             -TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred             -CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence             7899999999999999999999 88877654 22110000         00000000       000000000      


Q ss_pred             -----chhccCCCCCCEEeccc--CCCCCCCCchhcccCCCCCeeeccCCcCCCC-------c--------chHHhhC--
Q 047190          154 -----PHQLGNLSKLQVLDLRF--NNLFSSGNLDWLSYLSSLRYLDLADCKLSKF-------S--------NWVQVLS--  209 (1025)
Q Consensus       154 -----p~~l~~L~~L~~L~Ls~--n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~-------~--------~~~~~l~--  209 (1025)
                           +........++.+.+..  |.+..  .+..++++++|++|+|++|.+++.       +        .++..++  
T Consensus       411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~--IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~  488 (876)
T 4ecn_A          411 NPEMKPIKKDSRISLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS  488 (876)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred             CccccccccccccchhhceeccccCcccc--hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence                 00001111222222222  33211  334455555555555555555540       0        0222333  


Q ss_pred             CCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCC-CCC-CCchhhhhcCCCCccEEEcCCCCCCCCchhhhhC
Q 047190          210 NLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNY-LTN-SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGH  287 (1025)
Q Consensus       210 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~  287 (1025)
                      ++++|++|+|++|.+.+..|.  .+.++ ++|++|++++|+ +++ .+|..+..+.                   ..+..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~--~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~-------------------~~~~~  546 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPD--FLYDL-PELQSLNIACNRGISAAQLKADWTRLA-------------------DDEDT  546 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCG--GGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHH-------------------HCTTT
T ss_pred             cCCCCCEEECcCCCCCccChH--HHhCC-CCCCEEECcCCCCcccccchHHHHhhh-------------------hcccc
Confidence            445555555555544444442  22222 455555555554 444 4444444433                   00001


Q ss_pred             CCCCcEEEccCCCCCCcch--hhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccC-CCCC
Q 047190          288 MASLRHLDLLSNQLREVPK--FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP-DLGG  364 (1025)
Q Consensus       288 l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p-~l~~  364 (1025)
                      +++|++|+|++|+++.+|.  .++++++|++|++++|.+. .+| .+..++       +|+.|+|++|.++ .+| .+..
T Consensus       547 l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-------~L~~L~Ls~N~l~-~lp~~l~~  616 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-------KLTDLKLDYNQIE-EIPEDFCA  616 (876)
T ss_dssp             TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-------EESEEECCSSCCS-CCCTTSCE
T ss_pred             cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-------cceEEECcCCccc-cchHHHhh
Confidence            1144444444444444444  4444444444444444444 333 333333       4455555555444 233 2444


Q ss_pred             CCC-CcEEEeecccccCcccccccccCC--cceeeccCcccccccchhh--hc--CCCCCcEEECCCCccccccccCCCC
Q 047190          365 FPS-LQILSLENNRLTGTISKSIGQLSK--LELLLLSGNSLRGVISEAL--FS--NLSSLDTLQLSDNSLTLKFSHDWTP  437 (1025)
Q Consensus       365 l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~~~~~~--~~--~l~~L~~L~Ls~n~l~~~~~~~~~~  437 (1025)
                      +++ |++|++++|+++ .+|..+..++.  |+.|++++|.+.+.+|...  +.  .+++|+.|++++|.++         
T Consensus       617 l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---------  686 (876)
T 4ecn_A          617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---------  686 (876)
T ss_dssp             ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---------
T ss_pred             ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---------
Confidence            444 555555555544 44444443322  5555555555544333200  01  1223444444444332         


Q ss_pred             CcccceeeccCCCCCCCCch-hhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCC
Q 047190          438 PFQLFNIFLGSCKIGPRFPK-WLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGP  516 (1025)
Q Consensus       438 ~~~L~~L~L~~~~l~~~~p~-~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~  516 (1025)
                                      .+|. .+..+++|+.|++++|.+..+.+..+....+                            
T Consensus       687 ----------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~----------------------------  722 (876)
T 4ecn_A          687 ----------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG----------------------------  722 (876)
T ss_dssp             ----------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS----------------------------
T ss_pred             ----------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccc----------------------------
Confidence                            1222 2234555555555555555322211110000                            


Q ss_pred             eeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCccc--CCCCCCEEEcCCCc
Q 047190          517 GIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF--QFDSLAILNLANNS  594 (1025)
Q Consensus       517 ~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~  594 (1025)
                                        .                   ...+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|+
T Consensus       723 ------------------~-------------------l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~  764 (876)
T 4ecn_A          723 ------------------N-------------------YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC  764 (876)
T ss_dssp             ------------------C-------------------CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC
T ss_pred             ------------------c-------------------ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC
Confidence                              0                   001234555555555555 4444444  55555555555555


Q ss_pred             ccccCCcccccccCCCEEEcc------cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcC
Q 047190          595 FFGEIPDSMSFLRSIGSLSLY------NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKF  668 (1025)
Q Consensus       595 l~~~~p~~~~~l~~L~~L~L~------~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l  668 (1025)
                      +++ +|..+..+++|+.|+|+      +|++.+.+|..+.++++|+.|+|++|++ +.+|..+.   ++|+.|+|++|++
T Consensus       765 L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l  839 (876)
T 4ecn_A          765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPN  839 (876)
T ss_dssp             CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTT
T ss_pred             CCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCC
Confidence            554 45555555555555554      4777778888888888888888888888 57887753   5788888888888


Q ss_pred             cccCcccccccCcccEEEccccccc
Q 047190          669 HGNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       669 ~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                      ....+..++....+..+.|.+|++.
T Consensus       840 ~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          840 ISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CccChHHccccccchheeecCCCcc
Confidence            7776667766666667777777655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=447.16  Aligned_cols=490  Identities=19%  Similarity=0.197  Sum_probs=344.4

Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCc-chhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL  345 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L  345 (1025)
                      +++|++++|.+++..+.+|.++++|++|++++|+++++ |..|.++++|++|++++|.+.+..+..+..++       +|
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L  102 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-------SL  102 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-------TC
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc-------cc
Confidence            56666666666655555666666666666666666664 34566666677777766666665555565555       67


Q ss_pred             cEEEccccccccccC-CCCCCCCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCCC----cE
Q 047190          346 EWLYLAFNEITGTIP-DLGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL----DT  419 (1025)
Q Consensus       346 ~~L~L~~n~l~~~~p-~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L----~~  419 (1025)
                      ++|++++|.+++..+ .++.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+. .++.+++|    +.
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~  181 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLS  181 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCE
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhccchhhhh
Confidence            777777776664443 26677777777777777765 3567777777777777777777654433 35555666    67


Q ss_pred             EECCCCccccccccCCCCCcccceeeccCCCCCC-CCchhhhcCCcccEEEccCCCC------CCchhhhhhhccc-cce
Q 047190          420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGP-RFPKWLQSQNQTVALDVSNAGI------SDIVPDWFWDLTN-QLY  491 (1025)
Q Consensus       420 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-~~p~~l~~~~~L~~L~Ls~n~i------~~~~~~~~~~~~~-~L~  491 (1025)
                      +++++|.++...+..+... +|+.|++++|.... .++..+..+..++.+++....+      .......+.+... .++
T Consensus       182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            7777777776655555443 56666666664332 2455566666665554432211      1111111211110 234


Q ss_pred             EEEccCc-cCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190          492 YLNLSNN-EMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL  570 (1025)
Q Consensus       492 ~L~Ls~N-~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~  570 (1025)
                      .++++++ .+.+..|...                      ..+++|+.|++++|.+.+......  .+ +|+.|++++|.
T Consensus       261 ~l~l~~~~~~~~~~~~~~----------------------~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~  315 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLF----------------------NCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCK  315 (570)
T ss_dssp             EEEEEETTEEESCSTTTT----------------------GGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCB
T ss_pred             hhhhhcchhhhhhchhhh----------------------cCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCc
Confidence            4444444 2222222110                      114677888888887775333222  23 78888998888


Q ss_pred             ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccC--CccccCCCCccEEeCCCCcCccccC
Q 047190          571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGL--PSFFMNGSQLTLMDLGKNGLSGEIP  648 (1025)
Q Consensus       571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~g~ip  648 (1025)
                      +. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+.++++|++|++++|+++ .+|
T Consensus       316 ~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~  389 (570)
T 2z63_A          316 FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS  389 (570)
T ss_dssp             CS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEE
T ss_pred             cc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccc
Confidence            88 5554  4678888999998888776654  67888999999999888654  677888889999999999888 445


Q ss_pred             hhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccc
Q 047190          649 TWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR  727 (1025)
Q Consensus       649 ~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  727 (1025)
                      ..+. .+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|                     
T Consensus       390 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------  447 (570)
T 2z63_A          390 SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------------------  447 (570)
T ss_dssp             EEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred             cccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------
Confidence            4454 68899999999998887766 567888899999999999888888877776666                     


Q ss_pred             cccceeEeecccCCccceeeccccceeEEEcccCCCC-CcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeC
Q 047190          728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG-GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL  806 (1025)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~-~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdL  806 (1025)
                                                +.|++++|+++ +.+|..+..+++|++|+|++|++++.+|..++.+++|++|+|
T Consensus       448 --------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          448 --------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             --------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             --------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence                                      88999999998 678899999999999999999999999999999999999999


Q ss_pred             CCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCC
Q 047190          807 SRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQ  844 (1025)
Q Consensus       807 s~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~  844 (1025)
                      ++|++++.+|..+..+++|+.|++++|+++|.+|....
T Consensus       502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            99999999888999999999999999999999987543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-44  Score=438.50  Aligned_cols=490  Identities=21%  Similarity=0.208  Sum_probs=303.7

Q ss_pred             CCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCee
Q 047190          112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYL  191 (1025)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L  191 (1025)
                      +++++|+|++|.+++. .+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+. ...+..+.++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence            4678888888888764 5567778888888888888887766677788888888888877752 2233456666677777


Q ss_pred             eccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEE
Q 047190          192 DLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID  271 (1025)
Q Consensus       192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~  271 (1025)
                      ++++|.++.++.  ..++++++|++|++++|.+.+.                          .+|..+.++++  |++|+
T Consensus       106 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~--------------------------~lp~~~~~l~~--L~~L~  155 (570)
T 2z63_A          106 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSF--------------------------KLPEYFSNLTN--LEHLD  155 (570)
T ss_dssp             ECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGGCTT--CCEEE
T ss_pred             cccccccccCCC--ccccccccccEEecCCCcccee--------------------------cChhhhcccCC--CCEEe
Confidence            776666665432  1244555555555555544432                          23445555555  55555


Q ss_pred             cCCCCCCCCchhhhhCCCCC----cEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCC-cchHHhhhcCCCCCCCCCC
Q 047190          272 LGSNQLHGSIPLAFGHMASL----RHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRG-ELSEFIQNVSSGSTKNSSL  345 (1025)
Q Consensus       272 Ls~n~l~~~~p~~~~~l~~L----~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~~L  345 (1025)
                      +++|.+++..+..++.+++|    +.|++++|.+++++ ..+.. .+|++|++++|.... .++..+..+.       .+
T Consensus       156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~-------~l  227 (570)
T 2z63_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA-------GL  227 (570)
T ss_dssp             CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTT-------TC
T ss_pred             CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCcc-------cc
Confidence            55555555555555555555    56666666665533 33332 256666666654332 2334444444       45


Q ss_pred             cEEEccccccccc-----cCC--CCCCC--CCcEEEeecc-cccCcccccccccCCcceeeccCcccccccchhhhcCCC
Q 047190          346 EWLYLAFNEITGT-----IPD--LGGFP--SLQILSLENN-RLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLS  415 (1025)
Q Consensus       346 ~~L~L~~n~l~~~-----~p~--l~~l~--~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  415 (1025)
                      +.+.+....+...     ++.  +..++  .++.+++.++ .+.+..|..+.                         .++
T Consensus       228 ~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-------------------------~l~  282 (570)
T 2z63_A          228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-------------------------CLT  282 (570)
T ss_dssp             EEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-------------------------GGT
T ss_pred             ceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-------------------------CcC
Confidence            5444433222110     000  11111  1334444444 33444444444                         444


Q ss_pred             CCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEc
Q 047190          416 SLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNL  495 (1025)
Q Consensus       416 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L  495 (1025)
                      +|++|++++|.++.                         +|.++..+ +|+.|++++|.+..+..               
T Consensus       283 ~L~~L~l~~~~l~~-------------------------l~~~~~~~-~L~~L~l~~n~~~~l~~---------------  321 (570)
T 2z63_A          283 NVSSFSLVSVTIER-------------------------VKDFSYNF-GWQHLELVNCKFGQFPT---------------  321 (570)
T ss_dssp             TCSEEEEESCEECS-------------------------CCBCCSCC-CCSEEEEESCBCSSCCB---------------
T ss_pred             cccEEEecCccchh-------------------------hhhhhccC-CccEEeeccCcccccCc---------------
Confidence            45554444444331                         11122222 23333333332221100               


Q ss_pred             cCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccC
Q 047190          496 SNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRL  575 (1025)
Q Consensus       496 s~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  575 (1025)
                                                                                  ..+++|+.|++++|.+.+..
T Consensus       322 ------------------------------------------------------------~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          322 ------------------------------------------------------------LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             ------------------------------------------------------------CBCSSCCEEEEESCBSCCBC
T ss_pred             ------------------------------------------------------------ccccccCEEeCcCCcccccc
Confidence                                                                        01133555555555555444


Q ss_pred             CCcccCCCCCCEEEcCCCcccccC--CcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhh
Q 047190          576 PDCWFQFDSLAILNLANNSFFGEI--PDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE  653 (1025)
Q Consensus       576 p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  653 (1025)
                      +.  ..+++|++|++++|.+++..  |..+..+++|++|++++|.+++..+. +..+++|+.|++++|++++..|...+.
T Consensus       342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence            33  45666666666666665443  45566677777777777777755444 777888888888888887655544334


Q ss_pred             cCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc-cccCccccCccccccccccCcccccccccccccccccce
Q 047190          654 SLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS-GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP  732 (1025)
Q Consensus       654 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  732 (1025)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|+++ +.+|..++.+++|                          
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L--------------------------  472 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------------------------  472 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------------------
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC--------------------------
Confidence            6888888888888888888888888888999999999887 5788777776666                          


Q ss_pred             eEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190          733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  812 (1025)
                                           +.|||++|++++.+|..+.++++|++|+|++|++++.+|..++.+++|+.|++++|.++
T Consensus       473 ---------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          473 ---------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             ---------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ---------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence                                 78999999999888999999999999999999999999999999999999999999999


Q ss_pred             CcCcc
Q 047190          813 GGIPS  817 (1025)
Q Consensus       813 g~ip~  817 (1025)
                      +..|.
T Consensus       532 ~~~~~  536 (570)
T 2z63_A          532 CSCPR  536 (570)
T ss_dssp             CCTTT
T ss_pred             CCCcc
Confidence            98774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.6e-44  Score=434.66  Aligned_cols=493  Identities=21%  Similarity=0.220  Sum_probs=355.2

Q ss_pred             CCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCC
Q 047190          212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL  291 (1025)
Q Consensus       212 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  291 (1025)
                      +.....+.+++.++.++..   .   .++|++|++++|.+++..|..+..++.  |++|++++|.+++..|.+|+.+++|
T Consensus         5 ~~~~~c~~~~~~l~~ip~~---~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPSG---L---TAAMKSLDLSFNKITYIGHGDLRACAN--LQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             CTTSEEECTTSCCSSCCSC---C---CTTCCEEECCSSCCCEECSSTTSSCTT--CCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCceEECCCCcccccccc---C---CCCccEEECcCCccCccChhhhhcCCc--ccEEECCCCCcCccChhhccccccC
Confidence            3344567777777766542   1   167888888888888777777888877  8888888888888777888888888


Q ss_pred             cEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCc-chHHhhhcCCCCCCCCCCcEEEccccccccccC--CCCCCCC
Q 047190          292 RHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGE-LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP--DLGGFPS  367 (1025)
Q Consensus       292 ~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p--~l~~l~~  367 (1025)
                      ++|++++|.++++| ..++++++|++|++++|.+++. .|..+..++       +|++|++++|.+.+.+|  .+..+++
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~~~~~~l~~  149 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-------NLQTLRIGNVETFSEIRRIDFAGLTS  149 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-------TCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-------CccEEECCCCccccccCHhhhhcccc
Confidence            88888888888854 4588888888888888888763 445555555       88888888887544554  3788888


Q ss_pred             CcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeecc
Q 047190          368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG  447 (1025)
Q Consensus       368 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  447 (1025)
                      |++|++++|++++..|..++.+++|++|+++.|.+. .++...+..+++|++|++++|++++....              
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------  214 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS--------------  214 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC--------------
T ss_pred             cCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc--------------
Confidence            888888888888888888888888888888888875 45555566788888888888877643110              


Q ss_pred             CCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhc---cccceEEEccCccCCCCCCCccccccCCCCeeecccCc
Q 047190          448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDL---TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQ  524 (1025)
Q Consensus       448 ~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~---~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~  524 (1025)
                             .......+++|+.|++++|.+.+..+..+...   ..+|+.+++++|.+.+... +.               .
T Consensus       215 -------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~---------------~  271 (549)
T 2z81_A          215 -------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FN---------------P  271 (549)
T ss_dssp             -------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CC---------------C
T ss_pred             -------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-cc---------------c
Confidence                   00112345677778888887776665554322   2367777777777654210 00               0


Q ss_pred             CccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccccc-----CCCcccCCCCCCEEEcCCCcccccC
Q 047190          525 FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGR-----LPDCWFQFDSLAILNLANNSFFGEI  599 (1025)
Q Consensus       525 l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~  599 (1025)
                      .....+...                         ++|+.|++.++.+...     ++..+...++|+.|++++|.+. .+
T Consensus       272 ~~~~~~~~l-------------------------~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i  325 (549)
T 2z81_A          272 SESDVVSEL-------------------------GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV  325 (549)
T ss_dssp             CTTTCCCCC-------------------------TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred             cchhhhhhh-------------------------cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence            000111123                         3345555555543321     1222333567888888888876 55


Q ss_pred             Cccc-ccccCCCEEEcccCcccccCC---ccccCCCCccEEeCCCCcCccccCh--hhhhcCCCCcEEEeecCcCcccCc
Q 047190          600 PDSM-SFLRSIGSLSLYNNSLSGGLP---SFFMNGSQLTLMDLGKNGLSGEIPT--WIGESLPNLVVLSLRSNKFHGNIP  673 (1025)
Q Consensus       600 p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p  673 (1025)
                      |..+ ..+++|++|++++|++++.+|   ..+..+++|++|++++|++++ +|.  ..+..+++|++|+|++|+++ .+|
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  403 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMP  403 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred             CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence            5555 467888888888888887654   336778888889999888873 432  22336889999999999888 578


Q ss_pred             ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccce
Q 047190          674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI  753 (1025)
Q Consensus       674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  753 (1025)
                      ..+..+++|++|++++|++++ +|..+.                                                 +.|
T Consensus       404 ~~~~~~~~L~~L~Ls~N~l~~-l~~~~~-------------------------------------------------~~L  433 (549)
T 2z81_A          404 DSCQWPEKMRFLNLSSTGIRV-VKTCIP-------------------------------------------------QTL  433 (549)
T ss_dssp             SCCCCCTTCCEEECTTSCCSC-CCTTSC-------------------------------------------------TTC
T ss_pred             hhhcccccccEEECCCCCccc-ccchhc-------------------------------------------------CCc
Confidence            888888999999999998873 333221                                                 123


Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|||++|++++.+    ..+++|++|+|++|+|+ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            88999999999864    57899999999999999 6776 578999999999999999999999999999999999999


Q ss_pred             cccccCCC
Q 047190          834 NFSGKIPK  841 (1025)
Q Consensus       834 ~l~g~ip~  841 (1025)
                      ++.|.+|.
T Consensus       508 ~~~~~~~~  515 (549)
T 2z81_A          508 PWDCSCPR  515 (549)
T ss_dssp             CBCCCHHH
T ss_pred             CccCCCcc
Confidence            99999884

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.4e-43  Score=430.07  Aligned_cols=523  Identities=23%  Similarity=0.214  Sum_probs=331.9

Q ss_pred             ccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcc
Q 047190          104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLS  183 (1025)
Q Consensus       104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~  183 (1025)
                      +|..+.  +++++|||++|.|+++ .|..|.++++|++|+|++|+|++..|..|.+|++|++|+|++|++ ....+..|.
T Consensus        46 vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~  121 (635)
T 4g8a_A           46 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS  121 (635)
T ss_dssp             CCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGT
T ss_pred             cCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhc
Confidence            454442  4788999999999865 456889999999999999999876777888899999999998876 223345567


Q ss_pred             cCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcC
Q 047190          184 YLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS  263 (1025)
Q Consensus       184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~  263 (1025)
                      ++++|++|+|++|+++.++.  ..++++++|++|++++|.+.+..                          .|..+..+.
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~--------------------------~~~~~~~l~  173 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLT  173 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCT
T ss_pred             CCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCC--------------------------Cchhhccch
Confidence            77777777777777766542  23555666666666665554432                          233334444


Q ss_pred             CCCccEEEcCCCCCCCCchhhhhCCCC----CcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcc-hHHhhhcCCC
Q 047190          264 SNLVDHIDLGSNQLHGSIPLAFGHMAS----LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL-SEFIQNVSSG  338 (1025)
Q Consensus       264 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~----L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~  338 (1025)
                      .  |++|++++|.+++..+..+..+.+    ...++++.|.++.++........++.+++.+|.....+ +..+..+.  
T Consensus       174 ~--L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~--  249 (635)
T 4g8a_A          174 N--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA--  249 (635)
T ss_dssp             T--CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT--
T ss_pred             h--hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc--
Confidence            4  555555555555444444443322    23566667766665554445556667777766554332 23344444  


Q ss_pred             CCCCCCCcEEEccccccccc--cC-----CCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhh
Q 047190          339 STKNSSLEWLYLAFNEITGT--IP-----DLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALF  411 (1025)
Q Consensus       339 ~~~~~~L~~L~L~~n~l~~~--~p-----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  411 (1025)
                           .++...+..+.....  +.     .+..+..+....+..+.......                     .+. ..+
T Consensus       250 -----~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------------------~~~-~~~  302 (635)
T 4g8a_A          250 -----GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD---------------------GII-DLF  302 (635)
T ss_dssp             -----TCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE---------------------ECT-TTT
T ss_pred             -----ccccccccccccccccccccccccccccccchhhhhhhhhhhccccc---------------------chh-hhh
Confidence                 555555443322211  00     12223333333333322211100                     000 113


Q ss_pred             cCCCCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccce
Q 047190          412 SNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLY  491 (1025)
Q Consensus       412 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~  491 (1025)
                      ..+.+++.+++.++.+.....                          +....                         .++
T Consensus       303 ~~~~~l~~l~~~~~~~~~~~~--------------------------~~~~~-------------------------~L~  331 (635)
T 4g8a_A          303 NCLTNVSSFSLVSVTIERVKD--------------------------FSYNF-------------------------GWQ  331 (635)
T ss_dssp             GGGTTCSEEEEESCEEEECGG--------------------------GGSCC-------------------------CCS
T ss_pred             hhhcccccccccccccccccc--------------------------cccch-------------------------hhh
Confidence            344555555555544332110                          11111                         233


Q ss_pred             EEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccc
Q 047190          492 YLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLL  571 (1025)
Q Consensus       492 ~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l  571 (1025)
                      .|++++|.+.+..+                         .                         .+..|+.+++++|.+
T Consensus       332 ~L~l~~~~~~~~~~-------------------------~-------------------------~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          332 HLELVNCKFGQFPT-------------------------L-------------------------KLKSLKRLTFTSNKG  361 (635)
T ss_dssp             EEEEESCEESSCCC-------------------------C-------------------------BCTTCCEEEEESCCS
T ss_pred             hhhcccccccCcCc-------------------------c-------------------------cchhhhhcccccccC
Confidence            33333332221000                         0                         012344555555544


Q ss_pred             cccCCCcccCCCCCCEEEcCCCcccc--cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccCh
Q 047190          572 SGRLPDCWFQFDSLAILNLANNSFFG--EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT  649 (1025)
Q Consensus       572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~  649 (1025)
                      ....  ....+++|+.|++++|.+..  ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.++++.|...+..+.
T Consensus       362 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~  438 (635)
T 4g8a_A          362 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF  438 (635)
T ss_dssp             CCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred             CCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence            4222  23345666666666666542  344455556677777777777664 334566778888888887777766665


Q ss_pred             hhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc-cccCccccCccccccccccCccccccccccccccc
Q 047190          650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS-GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRG  728 (1025)
Q Consensus       650 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  728 (1025)
                      ..+..+++++.+++++|.+.+..+..+..+++|+.|+|++|++. +.+|..|..+++|                      
T Consensus       439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L----------------------  496 (635)
T 4g8a_A          439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----------------------  496 (635)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------------------
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc----------------------
Confidence            55557888888888888888888888888889999999988754 4567777776665                      


Q ss_pred             ccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCC
Q 047190          729 MLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSR  808 (1025)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  808 (1025)
                                               +.|||++|++++.+|..|.++++|++|+|++|+|++.+|..|+++++|++|||++
T Consensus       497 -------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          497 -------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             -------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             -------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence                                     7899999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCcCcccccCC-CCCCEEECcCCcccccCC
Q 047190          809 NHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       809 N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip  840 (1025)
                      |+|++.+|+.+..+ ++|++|++++|+++|.+.
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999998 789999999999998754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-44  Score=431.12  Aligned_cols=463  Identities=18%  Similarity=0.196  Sum_probs=291.4

Q ss_pred             EEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEE
Q 047190          216 NLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD  295 (1025)
Q Consensus       216 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  295 (1025)
                      +|++++|.++.++..   +   .++|++|++++|.+++..|..+..+..  |++|++++|.+++..|..|+++++|++|+
T Consensus         4 ~l~ls~n~l~~ip~~---~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   75 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKD---L---SQKTTILNISQNYISELWTSDILSLSK--LRILIISHNRIQYLDISVFKFNQELEYLD   75 (520)
T ss_dssp             EEECTTSCCSSCCCS---C---CTTCSEEECCSSCCCCCCHHHHTTCTT--CCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred             eEecCCCCccccccc---c---cccccEEECCCCcccccChhhcccccc--ccEEecCCCccCCcChHHhhcccCCCEEe
Confidence            455555555543321   1   166777777777777666667777777  77777777777777777777777888888


Q ss_pred             ccCCCCCCcchhhcCCCCccEEEeecCCCCC-cchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCC--cEEE
Q 047190          296 LLSNQLREVPKFLGNMSSLKRLVFSYNELRG-ELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL--QILS  372 (1025)
Q Consensus       296 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L--~~L~  372 (1025)
                      +++|+++++|..  .+++|++|++++|.+++ .+|..+..++       +|++|++++|.+++  ..+..+++|  ++|+
T Consensus        76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-------~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~  144 (520)
T 2z7x_B           76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-------QLKFLGLSTTHLEK--SSVLPIAHLNISKVL  144 (520)
T ss_dssp             CCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-------TCCEEEEEESSCCG--GGGGGGTTSCEEEEE
T ss_pred             cCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCC-------cceEEEecCcccch--hhccccccceeeEEE
Confidence            888877777765  67777777777777776 3566677666       77777777777764  235556666  7777


Q ss_pred             eecccc--cCcccccccccC-CcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeeccCC
Q 047190          373 LENNRL--TGTISKSIGQLS-KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSC  449 (1025)
Q Consensus       373 L~~n~l--~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~  449 (1025)
                      +++|.+  .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.......                 
T Consensus       145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------  207 (520)
T 2z7x_B          145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------  207 (520)
T ss_dssp             EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------
T ss_pred             eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------
Confidence            777777  666666665544 233456666666655555455555666655555553100000                 


Q ss_pred             CCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCC
Q 047190          450 KIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI  529 (1025)
Q Consensus       450 ~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~  529 (1025)
                      .+.+.+| .+..+++|+.|++++|.+.+..+..+...                                           
T Consensus       208 ~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------------------------------------  243 (520)
T 2z7x_B          208 YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL-------------------------------------------  243 (520)
T ss_dssp             HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH-------------------------------------------
T ss_pred             eeecchh-hhccccchhhccccccccCHHHHHHHHHH-------------------------------------------
Confidence            0001111 23444444444444444333222111110                                           


Q ss_pred             CCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcc-----cCCCCCCEEEcCCCcccccCC-ccc
Q 047190          530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW-----FQFDSLAILNLANNSFFGEIP-DSM  603 (1025)
Q Consensus       530 p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~  603 (1025)
                                             .   ..++|++|++++|.++|.+|..+     ..+++|+.+++++|.+  .+| ..+
T Consensus       244 -----------------------~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~  295 (520)
T 2z7x_B          244 -----------------------V---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYI  295 (520)
T ss_dssp             -----------------------H---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHH
T ss_pred             -----------------------h---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhh
Confidence                                   0   01345666666666665566555     5566666666666666  333 333


Q ss_pred             ccc---cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcc--cCcccccc
Q 047190          604 SFL---RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG--NIPFQLCY  678 (1025)
Q Consensus       604 ~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~  678 (1025)
                      ..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|.++. .+++|++|+|++|++++  .+|..+..
T Consensus       296 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~  372 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQ  372 (520)
T ss_dssp             HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTT
T ss_pred             hcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhh
Confidence            333   45666666666665322  124566677777777777666666665 56777777777777765  44566677


Q ss_pred             cCcccEEEccccccccccCcc-ccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEE
Q 047190          679 LSHIQILDLSLNNISGIIPKC-FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID  757 (1025)
Q Consensus       679 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ld  757 (1025)
                      +++|++|++++|++++.+|.. +..+++|                                               +.|+
T Consensus       373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L-----------------------------------------------~~L~  405 (520)
T 2z7x_B          373 MKSLQQLDISQNSVSYDEKKGDCSWTKSL-----------------------------------------------LSLN  405 (520)
T ss_dssp             CTTCCEEECCSSCCBCCGGGCSCCCCTTC-----------------------------------------------CEEE
T ss_pred             CCCCCEEECCCCcCCcccccchhccCccC-----------------------------------------------CEEE
Confidence            777777777777777645542 4333333                                               6777


Q ss_pred             cccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc-ccCCCCCCEEECcCCccc
Q 047190          758 LSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS-LSRLRLLSVMDLSYNNFS  836 (1025)
Q Consensus       758 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~Ldls~N~l~  836 (1025)
                      +++|++++.+|..+.  +.|+.|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|+.|++++|+++
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence            777777776666554  67888888888888 778777788899999999999985 5554 888899999999999998


Q ss_pred             ccCC
Q 047190          837 GKIP  840 (1025)
Q Consensus       837 g~ip  840 (1025)
                      |.++
T Consensus       482 c~c~  485 (520)
T 2z7x_B          482 CSCP  485 (520)
T ss_dssp             CCHH
T ss_pred             ccCC
Confidence            8765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-43  Score=427.36  Aligned_cols=492  Identities=17%  Similarity=0.185  Sum_probs=372.4

Q ss_pred             CCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCC
Q 047190          186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN  265 (1025)
Q Consensus       186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~  265 (1025)
                      +.....+.+++.++.+|.   .+  .++|++|++++|.+++..+.  .+.++ ++|++|++++|.+++..|..+..+.+ 
T Consensus         5 ~~~~~c~~~~~~l~~ip~---~~--~~~L~~L~Ls~n~l~~~~~~--~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~-   75 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPS---GL--TAAMKSLDLSFNKITYIGHG--DLRAC-ANLQVLILKSSRINTIEGDAFYSLGS-   75 (549)
T ss_dssp             CTTSEEECTTSCCSSCCS---CC--CTTCCEEECCSSCCCEECSS--TTSSC-TTCCEEECTTSCCCEECTTTTTTCTT-
T ss_pred             CCCceEECCCCccccccc---cC--CCCccEEECcCCccCccChh--hhhcC-CcccEEECCCCCcCccChhhcccccc-
Confidence            444557888888888764   22  37999999999999988765  33444 99999999999999888888999999 


Q ss_pred             CccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC--cchhhcCCCCccEEEeecCCCCCcch-HHhhhcCCCCCCC
Q 047190          266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELS-EFIQNVSSGSTKN  342 (1025)
Q Consensus       266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~~~~  342 (1025)
                       |++|++++|.+++..|..|+.+++|++|++++|.+++  +|..++++++|++|++++|.+.+.+| ..+..++      
T Consensus        76 -L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~------  148 (549)
T 2z81_A           76 -LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT------  148 (549)
T ss_dssp             -CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC------
T ss_pred             -CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc------
Confidence             9999999999999999899999999999999999996  56789999999999999999555554 5677766      


Q ss_pred             CCCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeeccCccccccc--chhhhcCCCCCcE
Q 047190          343 SSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI--SEALFSNLSSLDT  419 (1025)
Q Consensus       343 ~~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~l~~L~~  419 (1025)
                       +|++|++++|.+++..|. ++.+++|++|++++|.+.......+..+++|++|++++|.+.+..  +......+++|+.
T Consensus       149 -~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~  227 (549)
T 2z81_A          149 -SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK  227 (549)
T ss_dssp             -EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred             -ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence             999999999999988776 899999999999999987433333456899999999999998742  2223456788999


Q ss_pred             EECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchh------hhhhhccccceEE
Q 047190          420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP------DWFWDLTNQLYYL  493 (1025)
Q Consensus       420 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~------~~~~~~~~~L~~L  493 (1025)
                      |++++|.+++.....                    ++..+..+.+++.+++++|.+.+...      ..+. ...+++.|
T Consensus       228 L~l~~n~l~~~~~~~--------------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L  286 (549)
T 2z81_A          228 LAFRGSVLTDESFNE--------------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS-ELGKVETV  286 (549)
T ss_dssp             EEEESCEEEHHHHHH--------------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC-CCTTCCEE
T ss_pred             eeccccccchhHHHH--------------------HHHHhhhhccccccccccccccccccccccchhhhh-hhcccccc
Confidence            999999876543221                    12223344455555555554433210      0111 12356666


Q ss_pred             EccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccc
Q 047190          494 NLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSG  573 (1025)
Q Consensus       494 ~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~  573 (1025)
                      ++.++.+.....                           ...              ++.. ....++|+.|++++|.+. 
T Consensus       287 ~l~~~~i~~~~~---------------------------~~~--------------l~~~-~~~~~~L~~L~l~~n~l~-  323 (549)
T 2z81_A          287 TIRRLHIPQFYL---------------------------FYD--------------LSTV-YSLLEKVKRITVENSKVF-  323 (549)
T ss_dssp             EEESCBCSCGGG---------------------------SCC--------------CCHH-HHHSTTCCEEEEESSCCC-
T ss_pred             cccccccchhhh---------------------------ccc--------------chhh-hhhcccceEEEeccCccc-
Confidence            666665431000                           000              0000 011356888888888887 


Q ss_pred             cCCCcc-cCCCCCCEEEcCCCcccccCC---cccccccCCCEEEcccCcccccCC--ccccCCCCccEEeCCCCcCcccc
Q 047190          574 RLPDCW-FQFDSLAILNLANNSFFGEIP---DSMSFLRSIGSLSLYNNSLSGGLP--SFFMNGSQLTLMDLGKNGLSGEI  647 (1025)
Q Consensus       574 ~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~g~i  647 (1025)
                      .+|..+ ..+++|++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l  402 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM  402 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence            566555 468888888888888887653   346778888889998888876543  45788889999999999988 78


Q ss_pred             ChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccc
Q 047190          648 PTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR  727 (1025)
Q Consensus       648 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  727 (1025)
                      |..+. .+++|++|++++|++++ +|..+  .++|++|+|++|++++.+    ..+++                      
T Consensus       403 p~~~~-~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~----------------------  452 (549)
T 2z81_A          403 PDSCQ-WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPR----------------------  452 (549)
T ss_dssp             CSCCC-CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTT----------------------
T ss_pred             Chhhc-ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCCh----------------------
Confidence            88776 68889999999998874 34333  268999999999988653    23333                      


Q ss_pred             cccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCC
Q 047190          728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS  807 (1025)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs  807 (1025)
                                               |+.|||++|+++ .+|. ...+++|++|+|++|++++.+|..++.+++|+.|||+
T Consensus       453 -------------------------L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          453 -------------------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             -------------------------CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             -------------------------hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence                                     388999999998 5665 5789999999999999999999999999999999999


Q ss_pred             CCcCCCcCc
Q 047190          808 RNHFFGGIP  816 (1025)
Q Consensus       808 ~N~l~g~ip  816 (1025)
                      +|.+++..|
T Consensus       506 ~N~~~~~~~  514 (549)
T 2z81_A          506 TNPWDCSCP  514 (549)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCccCCCc
Confidence            999999887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.3e-44  Score=438.13  Aligned_cols=438  Identities=17%  Similarity=0.222  Sum_probs=316.5

Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCC-------------CcchhhcCCCCccEEEeecCCCCCcchHHhh
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLR-------------EVPKFLGNMSSLKRLVFSYNELRGELSEFIQ  333 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-------------~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  333 (1025)
                      ++.|+|+++.+.|.+|.+++++++|++|+|++|.+.             .+|...  +..|+ +++++|.+.+.+|..+.
T Consensus        83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred             EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence            667777777777777777777777777777777541             233333  44566 77777777776665544


Q ss_pred             hcCC------------CCCCCCCCcEEEcc--ccccccccCC-CCCCCCCcEEEeecccccCc-----------------
Q 047190          334 NVSS------------GSTKNSSLEWLYLA--FNEITGTIPD-LGGFPSLQILSLENNRLTGT-----------------  381 (1025)
Q Consensus       334 ~l~~------------~~~~~~~L~~L~L~--~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~-----------------  381 (1025)
                      .+..            .......++.+.+.  .|++++ +|. ++++++|++|++++|++++.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence            2110            00000122222222  456666 444 66667777777777776664                 


Q ss_pred             cccccc--ccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc-cccccccCCCCCcccceeeccCCCCCCCCchh
Q 047190          382 ISKSIG--QLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS-LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW  458 (1025)
Q Consensus       382 ~p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~  458 (1025)
                      +|..++  ++++|++|++++|.+.+.+|. .++++++|++|++++|+ +++.                       .+|..
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~-----------------------~lp~~  294 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGE-----------------------QLKDD  294 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHH-----------------------HHHHH
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccc-----------------------cchHH
Confidence            666666  666666666666666666664 35666666666666665 5430                       34444


Q ss_pred             hhcC------CcccEEEccCCCCCCchhh--hhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCC
Q 047190          459 LQSQ------NQTVALDVSNAGISDIVPD--WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIP  530 (1025)
Q Consensus       459 l~~~------~~L~~L~Ls~n~i~~~~~~--~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p  530 (1025)
                      +..+      ++|+.|++++|.++ .+|.  .+..+. +|++|++++|+++|.+|.+                       
T Consensus       295 ~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip~~-----------------------  349 (636)
T 4eco_A          295 WQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLPAF-----------------------  349 (636)
T ss_dssp             HHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECCCC-----------------------
T ss_pred             HHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchhhh-----------------------
Confidence            4443      67777777777777 4454  555443 5666666666655444311                       


Q ss_pred             CCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCC-CCEEEcCCCcccccCCccccccc--
Q 047190          531 LLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDS-LAILNLANNSFFGEIPDSMSFLR--  607 (1025)
Q Consensus       531 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--  607 (1025)
                                               ..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.  
T Consensus       350 -------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          350 -------------------------GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             -------------------------EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             -------------------------CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence                                     12366888999999888 78888888888 999999999988 7788777655  


Q ss_pred             CCCEEEcccCcccccCCcccc-------CCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccc-ccc
Q 047190          608 SIGSLSLYNNSLSGGLPSFFM-------NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL-CYL  679 (1025)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l  679 (1025)
                      +|++|++++|++++..|..+.       .+++|++|++++|+++ .+|..++..+++|++|+|++|+++ .+|..+ ...
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            899999999999998888888       7889999999999998 788888767899999999999999 555443 333


Q ss_pred             -------CcccEEEccccccccccCcccc--CccccccccccCcccccccccccccccccceeEeecccCCccceeeccc
Q 047190          680 -------SHIQILDLSLNNISGIIPKCFH--NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL  750 (1025)
Q Consensus       680 -------~~L~~L~Ls~N~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1025)
                             ++|+.|+|++|+++ .+|..+.  .+++|                                            
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L--------------------------------------------  515 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL--------------------------------------------  515 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--------------------------------------------
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhhccCCCc--------------------------------------------
Confidence                   38999999999999 6777765  66655                                            


Q ss_pred             cceeEEEcccCCCCCcChhhHhhcccCCeEec------cCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCC
Q 047190          751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNL------SNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRL  824 (1025)
Q Consensus       751 ~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~L------s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  824 (1025)
                         +.|||++|++++ +|..+.++++|+.|+|      ++|++.+.+|..++.+++|++|||++|++ +.+|..+.  ++
T Consensus       516 ---~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~  588 (636)
T 4eco_A          516 ---VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PN  588 (636)
T ss_dssp             ---CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TT
T ss_pred             ---CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--Cc
Confidence               889999999998 8999999999999999      56889999999999999999999999999 78898876  79


Q ss_pred             CCEEECcCCccccc
Q 047190          825 LSVMDLSYNNFSGK  838 (1025)
Q Consensus       825 L~~Ldls~N~l~g~  838 (1025)
                      |+.||+++|++...
T Consensus       589 L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          589 ISVLDIKDNPNISI  602 (636)
T ss_dssp             CCEEECCSCTTCEE
T ss_pred             CCEEECcCCCCccc
Confidence            99999999988653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-43  Score=418.69  Aligned_cols=455  Identities=19%  Similarity=0.220  Sum_probs=326.6

Q ss_pred             cEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190          268 DHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE  346 (1025)
Q Consensus       268 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~  346 (1025)
                      +++++++|.++ .+|..+.  ++|++|++++|.+++++ ..+.++++|++|++++|.+++..|..+..++       +|+
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-------ELE   72 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-------TCC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-------CCC
Confidence            46777777777 3555444  67777777777777743 5677777777777777777777777777666       777


Q ss_pred             EEEccccccccccCCCCCCCCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCCC--cEEECC
Q 047190          347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSL--DTLQLS  423 (1025)
Q Consensus       347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls  423 (1025)
                      +|+|++|+++ .+|.. .+++|++|++++|++++ .+|..++.+++|++|++++|.+.+.    .+..+++|  ++|+++
T Consensus        73 ~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           73 YLDLSHNKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLV  146 (520)
T ss_dssp             EEECCSSCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEE
T ss_pred             EEecCCCcee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEee
Confidence            7777777777 34444 67777777777777765 3566777777777777777776541    24555555  555555


Q ss_pred             CCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCC
Q 047190          424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGK  503 (1025)
Q Consensus       424 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  503 (1025)
                      +|.+.+                      .+..|..+..+.                        .+...+++++|.+.+.
T Consensus       147 ~n~l~~----------------------~~~~~~~l~~l~------------------------~~~l~l~l~~n~~~~~  180 (520)
T 2z7x_B          147 LGETYG----------------------EKEDPEGLQDFN------------------------TESLHIVFPTNKEFHF  180 (520)
T ss_dssp             ECTTTT----------------------SSCCTTTTTTCC------------------------EEEEEEECCSSSCCCC
T ss_pred             cccccc----------------------cccccccccccc------------------------cceEEEEeccCcchhh
Confidence            555410                      122233333222                        1222334444444433


Q ss_pred             CCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCc-------ccccccccccccCCcccEEEccCccccccCC
Q 047190          504 LPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNK-------FSGSISFLCSISSHLLTYLDLSNNLLSGRLP  576 (1025)
Q Consensus       504 ~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p  576 (1025)
                      ++....                     ..+++|+.|++++|.       +.+.++..  ..+++|+.|++++|.+++..+
T Consensus       181 ~~~~~~---------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~  237 (520)
T 2z7x_B          181 ILDVSV---------------------KTVANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNIETTWNSF  237 (520)
T ss_dssp             CCCCCC---------------------TTCSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEEEEEHHHH
T ss_pred             hhhhhh---------------------hcccceeeccccccccccccceeecchhhh--ccccchhhccccccccCHHHH
Confidence            322110                     012344555555544       33333322  235778899999888876533


Q ss_pred             Cccc---CCCCCCEEEcCCCcccccCCccc-----ccccCCCEEEcccCcccccCC-ccccCC---CCccEEeCCCCcCc
Q 047190          577 DCWF---QFDSLAILNLANNSFFGEIPDSM-----SFLRSIGSLSLYNNSLSGGLP-SFFMNG---SQLTLMDLGKNGLS  644 (1025)
Q Consensus       577 ~~~~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~  644 (1025)
                      ..+.   ..++|++|++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|++.
T Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~  315 (520)
T 2z7x_B          238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV  315 (520)
T ss_dssp             HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence            2221   24689999999999999999988     8999999999999999  455 445444   67999999999987


Q ss_pred             cccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc--ccCccccCccccccccccCccccccccc
Q 047190          645 GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG--IIPKCFHNFTAMTKEKSSNLSIISNYYY  722 (1025)
Q Consensus       645 g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~l~~~~~~~~~~~~~~~~  722 (1025)
                      + ++.  ...+++|++|++++|++++.+|..+..+++|++|++++|++++  .+|..++.+++|                
T Consensus       316 ~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L----------------  376 (520)
T 2z7x_B          316 H-MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL----------------  376 (520)
T ss_dssp             C-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC----------------
T ss_pred             c-ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC----------------
Confidence            3 331  1268999999999999999999999999999999999999997  556667766665                


Q ss_pred             ccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhh-HhhcccCCeEeccCccccccCCCCCCCCCCc
Q 047190          723 NLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE-IMDLVGLVALNLSNNNLTGQITPRIGQLKSL  801 (1025)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~-~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L  801 (1025)
                                                     +.|||++|++++.+|.. +..++.|++|+|++|++++.+|..+.  ++|
T Consensus       377 -------------------------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L  423 (520)
T 2z7x_B          377 -------------------------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI  423 (520)
T ss_dssp             -------------------------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred             -------------------------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence                                           88999999999977765 88899999999999999999988776  799


Q ss_pred             cEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC--CCCCCcCCCCcCCCCCCCCCC
Q 047190          802 DFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG--TQLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       802 ~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~--~~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      +.|||++|+++ .+|..+..+++|++||+++|+++ .+|..  ..+..+....+.|||+.|.|+
T Consensus       424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999999 78888889999999999999999 46764  334455555689999999764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-42  Score=427.97  Aligned_cols=353  Identities=20%  Similarity=0.267  Sum_probs=232.4

Q ss_pred             cccccccCC-CCCCCCCcEEEeecccccC-----------------ccccccc--ccCCcceeeccCcccccccchhhhc
Q 047190          353 NEITGTIPD-LGGFPSLQILSLENNRLTG-----------------TISKSIG--QLSKLELLLLSGNSLRGVISEALFS  412 (1025)
Q Consensus       353 n~l~~~~p~-l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~  412 (1025)
                      |.+++ +|. ++++++|++|+|++|++++                 .+|..++  ++++|++|+|++|.+.+.+|. .+.
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY  512 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence            66666 443 6667777777777777766                 2666666  777777777777777766664 367


Q ss_pred             CCCCCcEEECCCCc-ccc-ccccCCC-------CCcccceeeccCCCCCCCCch--hhhcCCcccEEEccCCCCCCchhh
Q 047190          413 NLSSLDTLQLSDNS-LTL-KFSHDWT-------PPFQLFNIFLGSCKIGPRFPK--WLQSQNQTVALDVSNAGISDIVPD  481 (1025)
Q Consensus       413 ~l~~L~~L~Ls~n~-l~~-~~~~~~~-------~~~~L~~L~L~~~~l~~~~p~--~l~~~~~L~~L~Ls~n~i~~~~~~  481 (1025)
                      ++++|++|++++|+ +++ ..+..+.       .+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.+. .+| 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            77777777777776 665 4444333       3347888888888887 7777  8999999999999999887 434 


Q ss_pred             hhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcc
Q 047190          482 WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLL  561 (1025)
Q Consensus       482 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  561 (1025)
                      .+..+                                                                        ++|
T Consensus       590 ~~~~L------------------------------------------------------------------------~~L  597 (876)
T 4ecn_A          590 AFGTN------------------------------------------------------------------------VKL  597 (876)
T ss_dssp             CCCTT------------------------------------------------------------------------SEE
T ss_pred             hhcCC------------------------------------------------------------------------Ccc
Confidence            33222                                                                        334


Q ss_pred             cEEEccCccccccCCCcccCCCC-CCEEEcCCCcccccCCcccccccC--CCEEEcccCcccccCCccc---c--CCCCc
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDS-LAILNLANNSFFGEIPDSMSFLRS--IGSLSLYNNSLSGGLPSFF---M--NGSQL  633 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L  633 (1025)
                      +.|++++|.++ .+|..+.++++ |+.|+|++|.++ .+|..+..+..  |+.|++++|++++.+|...   .  .+++|
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L  675 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA  675 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred             eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence            55555555555 45555555555 555555555555 44554444432  5555555555555444221   1  23466


Q ss_pred             cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccc--------cCcccEEEccccccccccCcccc--Cc
Q 047190          634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCY--------LSHIQILDLSLNNISGIIPKCFH--NF  703 (1025)
Q Consensus       634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l  703 (1025)
                      +.|+|++|+++ .+|..++..+++|++|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+
T Consensus       676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l  752 (876)
T 4ecn_A          676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL  752 (876)
T ss_dssp             EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred             CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence            67777777766 666666555667777777777666 44443332        236777777777777 5665554  44


Q ss_pred             cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190          704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS  783 (1025)
Q Consensus       704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls  783 (1025)
                      ++|                                               +.|||++|++++ +|..+.++++|+.|+|+
T Consensus       753 ~~L-----------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          753 PYL-----------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             TTC-----------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             CCc-----------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence            444                                               667777777776 67777777777777776


Q ss_pred             C------ccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190          784 N------NNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       784 ~------N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      +      |++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            5      778888888888888888888888888 77888766  5888888888887644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.3e-41  Score=410.38  Aligned_cols=509  Identities=19%  Similarity=0.192  Sum_probs=351.0

Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcc-hhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP-KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL  345 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L  345 (1025)
                      +++|+|++|.|++..+.+|.++++|++|+|++|+++++| ..|.++++|++|+|++|++++..+..|.+++       +|
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-------~L  126 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-------SL  126 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-------TC
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-------CC
Confidence            666777777776666666777777777777777777754 4567777777777777777766666666666       77


Q ss_pred             cEEEccccccccccCC-CCCCCCCcEEEeecccccC-cccccccccCCcceeeccCcccccccchhhhcCCCC----CcE
Q 047190          346 EWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTG-TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSS----LDT  419 (1025)
Q Consensus       346 ~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~----L~~  419 (1025)
                      ++|+|++|++++..+. |+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+.. +..+.+    ...
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~  205 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLS  205 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCE
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhh
Confidence            7777777777755443 6777777777777777764 34666677777777777777777554432 433332    235


Q ss_pred             EECCCCccccccccCCCCCcccceeeccCCCCCC-CCchhhhcCCcccEEEccCCC------CCCchhhhhhhccccceE
Q 047190          420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGP-RFPKWLQSQNQTVALDVSNAG------ISDIVPDWFWDLTNQLYY  492 (1025)
Q Consensus       420 L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-~~p~~l~~~~~L~~L~Ls~n~------i~~~~~~~~~~~~~~L~~  492 (1025)
                      ++++.|.+....+..+ ....++.+.+.++.... ..+..+..+..++...+..+.      +.......+.... .+..
T Consensus       206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~l~~  283 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC-NLTI  283 (635)
T ss_dssp             EECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG-GSEE
T ss_pred             hhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc-chhh
Confidence            6677776654433322 22233444444443321 122334444444443332111      1111111221111 2333


Q ss_pred             EEccCccCCCCCCCccccccCCCCeeecccCcCccC--CCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190          493 LNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGP--IPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL  570 (1025)
Q Consensus       493 L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~--~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~  570 (1025)
                      .++..+....                     ...+.  ......+++.+++.++.+.......   ....|+.|++.+|.
T Consensus       284 ~~l~~~~~~~---------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~  339 (635)
T 4g8a_A          284 EEFRLAYLDY---------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCK  339 (635)
T ss_dssp             EEEEEECCCS---------------------CEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCE
T ss_pred             hhhhhhhhcc---------------------cccchhhhhhhhcccccccccccccccccccc---cchhhhhhhccccc
Confidence            3322222110                     00111  1112457778888888776544322   23678999999999


Q ss_pred             ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--ccCCccccCCCCccEEeCCCCcCccccC
Q 047190          571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDLGKNGLSGEIP  648 (1025)
Q Consensus       571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~g~ip  648 (1025)
                      +.+..+.   .+..|+.+++.+|.+....  ....+++|+.|++++|.+.  +..+..+..+.+|+.|+++.|.+. .++
T Consensus       340 ~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~  413 (635)
T 4g8a_A          340 FGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS  413 (635)
T ss_dssp             ESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred             ccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence            8865443   4678889999998876543  3456899999999999885  345667788899999999999987 455


Q ss_pred             hhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccc
Q 047190          649 TWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLR  727 (1025)
Q Consensus       649 ~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  727 (1025)
                      ..+. .+++|+.+++.+|......+ ..+..+++++.+++++|.+.+..|..+..++.+                     
T Consensus       414 ~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L---------------------  471 (635)
T 4g8a_A          414 SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------------------  471 (635)
T ss_dssp             SCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred             cccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh---------------------
Confidence            5555 68999999999888776654 467889999999999999998888777766665                     


Q ss_pred             cccceeEeecccCCccceeeccccceeEEEcccCCC-CCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeC
Q 047190          728 GMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL-GGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL  806 (1025)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l-~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdL  806 (1025)
                                                +.|+|++|++ .+.+|..+..+++|++|+|++|+|++.+|..|+++++|++|+|
T Consensus       472 --------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          472 --------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             --------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             --------------------------hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence                                      8899999985 4567889999999999999999999999999999999999999


Q ss_pred             CCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCC-CC-CCcCCCCcCCCCCCCCCC
Q 047190          807 SRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT-QL-QRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       807 s~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~-~~-~~~~~~~~~gN~~lcg~~  863 (1025)
                      ++|+|++.+|..+..+++|++||+++|++++.+|..- .+ .++....+.||||.|+|.
T Consensus       526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999999999999999999999988752 22 344555689999999884

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=409.40  Aligned_cols=463  Identities=20%  Similarity=0.226  Sum_probs=304.9

Q ss_pred             CCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcE
Q 047190          214 LTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH  293 (1025)
Q Consensus       214 L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  293 (1025)
                      .+++++++|.+++++..   .   .++|++|++++|.+++..+..+..++.  |++|++++|.+++..|.+|+++++|++
T Consensus        33 ~~~l~ls~~~L~~ip~~---~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKD---L---PPRTKALSLSQNSISELRMPDISFLSE--LRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CCEEECTTSCCCSCCTT---S---CTTCCEEECCSSCCCCCCGGGTTTCTT--CCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             CcEEEcCCCCCccCCCC---C---CCCcCEEECCCCCccccChhhhccCCC--ccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            35666666666654432   1   167888888888888776777888888  888888888888877888888888889


Q ss_pred             EEccCCCCCCcchhhcCCCCccEEEeecCCCCCc-chHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCC--cE
Q 047190          294 LDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGE-LSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL--QI  370 (1025)
Q Consensus       294 L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L--~~  370 (1025)
                      |++++|.++.+|..  .+++|++|++++|.+.+. +|..+..++       +|++|++++|.+++  ..+..+++|  ++
T Consensus       105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-------~L~~L~L~~n~l~~--~~~~~l~~L~L~~  173 (562)
T 3a79_B          105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-------KLTFLGLSAAKFRQ--LDLLPVAHLHLSC  173 (562)
T ss_dssp             EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-------TCCEEEEECSBCCT--TTTGGGTTSCEEE
T ss_pred             EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-------cccEEecCCCcccc--CchhhhhhceeeE
Confidence            99988888888876  788888888888888873 457777777       88888888888875  235555555  88


Q ss_pred             EEeecccc--cCcccccccccC--CcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeec
Q 047190          371 LSLENNRL--TGTISKSIGQLS--KLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL  446 (1025)
Q Consensus       371 L~L~~n~l--~~~~p~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  446 (1025)
                      |++++|++  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|.......              
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l--------------  238 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL--------------  238 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH--------------
T ss_pred             EEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchH--------------
Confidence            88888888  777777777654  33 557777777766666556666777777777664210000              


Q ss_pred             cCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCc
Q 047190          447 GSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD  526 (1025)
Q Consensus       447 ~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~  526 (1025)
                            ......+..++.++.++++++.+.+.....+..                                         
T Consensus       239 ------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-----------------------------------------  271 (562)
T 3a79_B          239 ------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-----------------------------------------  271 (562)
T ss_dssp             ------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-----------------------------------------
T ss_pred             ------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-----------------------------------------
Confidence                  001122344444444444444333221111100                                         


Q ss_pred             cCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcc-----cCCCCCCEEEcCCCcccccCC-
Q 047190          527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW-----FQFDSLAILNLANNSFFGEIP-  600 (1025)
Q Consensus       527 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-  600 (1025)
                                               ..   ..++|++|++++|.++|.+|..+     .+++.|+.++++.|.+  .+| 
T Consensus       272 -------------------------~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~  321 (562)
T 3a79_B          272 -------------------------FF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK  321 (562)
T ss_dssp             -------------------------HH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH
T ss_pred             -------------------------hh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh
Confidence                                     00   01245555555555555555544     4444444444444444  222 


Q ss_pred             ccccc---ccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCccc--Cccc
Q 047190          601 DSMSF---LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN--IPFQ  675 (1025)
Q Consensus       601 ~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~--~p~~  675 (1025)
                      ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+. .+++|++|+|++|++++.  +|..
T Consensus       322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~  398 (562)
T 3a79_B          322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALM  398 (562)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHT
T ss_pred             hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhh
Confidence            11111   134666666666654321  124566667777777777665666655 566777777777776652  3455


Q ss_pred             ccccCcccEEEccccccccccCcc-ccCccccccccccCcccccccccccccccccceeEeecccCCccceeecccccee
Q 047190          676 LCYLSHIQILDLSLNNISGIIPKC-FHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIK  754 (1025)
Q Consensus       676 l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  754 (1025)
                      +..+++|++|++++|++++.+|.. +..+++|                                               +
T Consensus       399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-----------------------------------------------~  431 (562)
T 3a79_B          399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-----------------------------------------------L  431 (562)
T ss_dssp             TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC-----------------------------------------------C
T ss_pred             hcCCCCCCEEECCCCcCCCccChhhhcCcccC-----------------------------------------------C
Confidence            677777777777777777645432 4443333                                               6


Q ss_pred             EEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc-ccCCCCCCEEECcCC
Q 047190          755 IIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS-LSRLRLLSVMDLSYN  833 (1025)
Q Consensus       755 ~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~Ldls~N  833 (1025)
                      .|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|+.|++++|
T Consensus       432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSC
T ss_pred             EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCC
Confidence            777777777776665544  68999999999998 678778899999999999999995 5555 899999999999999


Q ss_pred             cccccCCC
Q 047190          834 NFSGKIPK  841 (1025)
Q Consensus       834 ~l~g~ip~  841 (1025)
                      ++.|.+|.
T Consensus       508 ~~~c~c~~  515 (562)
T 3a79_B          508 PWDCTCPG  515 (562)
T ss_dssp             CBCCCHHH
T ss_pred             CcCCCcch
Confidence            99998774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.3e-40  Score=393.86  Aligned_cols=249  Identities=19%  Similarity=0.275  Sum_probs=198.4

Q ss_pred             CCcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCcccccCCccc-----ccccCCCEEEcccCcccccCC-ccc
Q 047190          558 SHLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFGEIPDSM-----SFLRSIGSLSLYNNSLSGGLP-SFF  627 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~  627 (1025)
                      .+.|+.|+++++.+.+.    ++..+ ..++|++|++++|.++|.+|..+     ..++.|+.++++.|.+  .+| ..+
T Consensus       248 l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~  324 (562)
T 3a79_B          248 GPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEAL  324 (562)
T ss_dssp             CSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHH
T ss_pred             cCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhh
Confidence            35566777766665543    12222 24589999999999999999887     7777788888888877  344 222


Q ss_pred             cC---CCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc--cCccccC
Q 047190          628 MN---GSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI--IPKCFHN  702 (1025)
Q Consensus       628 ~~---l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~  702 (1025)
                      ..   ..+|+.|++++|.+. .++  +...+++|++|++++|++++.+|..+..+++|+.|+|++|++++.  +|..++.
T Consensus       325 ~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  401 (562)
T 3a79_B          325 YSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN  401 (562)
T ss_dssp             HHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT
T ss_pred             hhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC
Confidence            22   367999999999987 332  112689999999999999999999999999999999999999973  3456666


Q ss_pred             ccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChh-hHhhcccCCeEe
Q 047190          703 FTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLE-EIMDLVGLVALN  781 (1025)
Q Consensus       703 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~-~~~~l~~L~~L~  781 (1025)
                      +++|                                               +.|||++|++++.+|. .+..+++|++|+
T Consensus       402 l~~L-----------------------------------------------~~L~l~~N~l~~~~~~~~~~~l~~L~~L~  434 (562)
T 3a79_B          402 MSSL-----------------------------------------------ETLDVSLNSLNSHAYDRTCAWAESILVLN  434 (562)
T ss_dssp             CTTC-----------------------------------------------CEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred             CCCC-----------------------------------------------CEEECCCCcCCCccChhhhcCcccCCEEE
Confidence            6655                                               8899999999996665 488999999999


Q ss_pred             ccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC--CCCCCcCCCCcCCCCCC
Q 047190          782 LSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG--TQLQRFGASTYAGNPEL  859 (1025)
Q Consensus       782 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~--~~~~~~~~~~~~gN~~l  859 (1025)
                      |++|++++.+|..+.  ++|++|||++|+++ .+|..+..+++|++||+++|+++ .+|..  ..+..+....+.|||+.
T Consensus       435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence            999999999988776  79999999999999 68888889999999999999999 56764  34455555668999999


Q ss_pred             CCCC
Q 047190          860 CGLP  863 (1025)
Q Consensus       860 cg~~  863 (1025)
                      |+|+
T Consensus       511 c~c~  514 (562)
T 3a79_B          511 CTCP  514 (562)
T ss_dssp             CCHH
T ss_pred             CCcc
Confidence            9764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.3e-39  Score=375.39  Aligned_cols=246  Identities=23%  Similarity=0.254  Sum_probs=133.1

Q ss_pred             ccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccC
Q 047190          106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYL  185 (1025)
Q Consensus       106 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l  185 (1025)
                      +.-.+.++|++|++++|.+ + .+|+.++++++|++|++++|.++|.+|..++++++|+++++++|..            
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            3444578999999999999 4 4899999999999999999999999999999999998888887742            


Q ss_pred             CCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCC
Q 047190          186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSN  265 (1025)
Q Consensus       186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~  265 (1025)
                      .++++|++++|.+++++.+      .++|++|++++|.+++.+..       .++|++|++                   
T Consensus        71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~~-------~~~L~~L~l-------------------  118 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPEL-------PQSLKSLLV-------------------  118 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCCC-------CTTCCEEEC-------------------
T ss_pred             cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCccccc-------cCCCcEEEC-------------------
Confidence            4677778877777765431      24555555555555543210       134444444                   


Q ss_pred             CccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCC
Q 047190          266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSL  345 (1025)
Q Consensus       266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L  345 (1025)
                             ++|.+++. +.   ..++|++|++++|+++++| .++++++|++|++++|.+++ +|..+   .       +|
T Consensus       119 -------~~n~l~~l-~~---~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~-------~L  175 (454)
T 1jl5_A          119 -------DNNNLKAL-SD---LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---P-------SL  175 (454)
T ss_dssp             -------CSSCCSCC-CS---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---T-------TC
T ss_pred             -------CCCccCcc-cC---CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---c-------cc
Confidence                   44444431 11   0145666666666666665 36666666666666666554 22211   1       66


Q ss_pred             cEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCC
Q 047190          346 EWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN  425 (1025)
Q Consensus       346 ~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  425 (1025)
                      ++|++++|.+++ +|.++.+++|++|++++|++++ +|...   ++|++|++++|.+. .+|.  +..+++|++|++++|
T Consensus       176 ~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          176 EFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNN  247 (454)
T ss_dssp             CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSS
T ss_pred             cEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCC
Confidence            677777776664 4566667777777777776664 33221   35666666666665 3442  555566666666555


Q ss_pred             ccc
Q 047190          426 SLT  428 (1025)
Q Consensus       426 ~l~  428 (1025)
                      +++
T Consensus       248 ~l~  250 (454)
T 1jl5_A          248 LLK  250 (454)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.8e-38  Score=366.95  Aligned_cols=390  Identities=20%  Similarity=0.182  Sum_probs=252.9

Q ss_pred             EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190          347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS  426 (1025)
Q Consensus       347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (1025)
                      .++.+++.++ .+|.  -.++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.
T Consensus        14 ~~~c~~~~l~-~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           14 NAICINRGLH-QVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             EEECCSSCCS-SCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             ccCcCCCCcc-cCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            3444444444 3333  124556666666665555555566666666666666665545544445566666666666665


Q ss_pred             cccccccCCCCCcccceeeccCCCCCCCCchh--hhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCC
Q 047190          427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKW--LQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKL  504 (1025)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~--l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  504 (1025)
                      ++...+..+..+.+|++|++++|.+.+..+..  +..+++|+.|++++|.+.+..|..+....++|++|++++|.+++..
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            55444444444444444444444444322222  5555666666666666665555443222235555555555554332


Q ss_pred             CCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcc-----
Q 047190          505 PDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW-----  579 (1025)
Q Consensus       505 p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-----  579 (1025)
                      |....                                             ......|+.|++++|.+.+..+..+     
T Consensus       171 ~~~l~---------------------------------------------~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~  205 (455)
T 3v47_A          171 EEDLL---------------------------------------------NFQGKHFTLLRLSSITLQDMNEYWLGWEKC  205 (455)
T ss_dssp             TTTSG---------------------------------------------GGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred             hhhhh---------------------------------------------ccccccccccccccCcccccchhhcccccc
Confidence            21100                                             0011346677777777665443322     


Q ss_pred             ---cCCCCCCEEEcCCCcccccCCcccccc---cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhh-
Q 047190          580 ---FQFDSLAILNLANNSFFGEIPDSMSFL---RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG-  652 (1025)
Q Consensus       580 ---~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~-  652 (1025)
                         ..+++|++|++++|.+++..|..+...   .+|+.|++++|.+.+...              ..+.+.+..+..+. 
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~  271 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKG  271 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGG
T ss_pred             ccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccccccc
Confidence               234566666666666665555544433   555666666555443211              11122211111111 


Q ss_pred             hcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccce
Q 047190          653 ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMP  732 (1025)
Q Consensus       653 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  732 (1025)
                      -..++|++|++++|++.+..|..+..+++|++|+|++|++++..|..|+.++.|                          
T Consensus       272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------  325 (455)
T 3v47_A          272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------  325 (455)
T ss_dssp             GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------
T ss_pred             ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC--------------------------
Confidence            024789999999999999999999999999999999999998888888877776                          


Q ss_pred             eEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC
Q 047190          733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  812 (1025)
                                           +.|+|++|++++..|..+.++++|++|+|++|++++.+|..++.+++|++|||++|+++
T Consensus       326 ---------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          326 ---------------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             ---------------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ---------------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence                                 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccccCCCCCCEEECcCCcccccCCCCCCC
Q 047190          813 GGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQL  845 (1025)
Q Consensus       813 g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~  845 (1025)
                      +..+..+..+++|+.|++++|+++|.+|....+
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            988888899999999999999999999965433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.9e-37  Score=357.96  Aligned_cols=391  Identities=21%  Similarity=0.202  Sum_probs=278.2

Q ss_pred             cEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-c-chhhcCCCCccEEEe
Q 047190          242 EVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-V-PKFLGNMSSLKRLVF  319 (1025)
Q Consensus       242 ~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-l-p~~l~~l~~L~~L~L  319 (1025)
                      +.++.+++.++. +|. +.  ..  +++|++++|.+++..|..|+++++|++|++++|.+.+ + |..|.++++|++|++
T Consensus        13 ~~~~c~~~~l~~-lp~-l~--~~--l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           13 YNAICINRGLHQ-VPE-LP--AH--VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TEEECCSSCCSS-CCC-CC--TT--CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             cccCcCCCCccc-CCC-CC--Cc--cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            456666666653 444 11  33  7777777777776667777777777777777777764 4 455677777777777


Q ss_pred             ecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC---CCCCCCCcEEEeecccccCccccc-ccccCCccee
Q 047190          320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD---LGGFPSLQILSLENNRLTGTISKS-IGQLSKLELL  395 (1025)
Q Consensus       320 s~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~---l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  395 (1025)
                      ++|.+.+..|..+..++       +|++|+|++|.+++.++.   +..+++|++|++++|++++..|.. +..+++|++|
T Consensus        87 s~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  159 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLA-------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL  159 (455)
T ss_dssp             TTCTTCEECTTTTTTCT-------TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred             CCCccCccChhhccCcc-------cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence            77777666666666555       677777777766653322   566666666666666666555554 5566666666


Q ss_pred             eccCcccccccchhhhcCC--CCCcEEECCCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCC
Q 047190          396 LLSGNSLRGVISEALFSNL--SSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA  473 (1025)
Q Consensus       396 ~L~~N~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n  473 (1025)
                      ++++|.+.+..+.. +..+  .+|+.|++++|.+.......+.                ......+..+++|+.|++++|
T Consensus       160 ~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          160 DLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             ECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTS
T ss_pred             eCCCCcccccChhh-hhccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCC
Confidence            66666666544432 3332  4455555555544432111100                000011335678999999999


Q ss_pred             CCCCchhhhhhhcc--ccceEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCccccccc
Q 047190          474 GISDIVPDWFWDLT--NQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSIS  551 (1025)
Q Consensus       474 ~i~~~~~~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~  551 (1025)
                      .+.+..|..+....  .+|+.|++++|.+.+...               ..+.+.+..+.             .      
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~-------------~------  268 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDNF-------------T------  268 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCTT-------------T------
T ss_pred             cccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCccc-------------c------
Confidence            99999998887652  479999999988764321               11111111110             0      


Q ss_pred             ccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCC
Q 047190          552 FLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGS  631 (1025)
Q Consensus       552 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  631 (1025)
                       ......++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..|.+++
T Consensus       269 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          269 -FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             -TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred             -cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence             0011236799999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             CccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCc
Q 047190          632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPK  698 (1025)
Q Consensus       632 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  698 (1025)
                      +|++|+|++|++++..|..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++.+|.
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999977787777 699999999999999987777889999999999999999988873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8.7e-38  Score=363.46  Aligned_cols=82  Identities=21%  Similarity=0.147  Sum_probs=36.0

Q ss_pred             CcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCC-------------cEEEccCCCCCCcc
Q 047190          239 KSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASL-------------RHLDLLSNQLREVP  305 (1025)
Q Consensus       239 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~n~l~~lp  305 (1025)
                      +.|++|++++|.+ +.+|+.+++++.  |++|++++|.+.|.+|..++.+++|             ++|++++|+++++|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~--L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKS--KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             ------------------------CC--HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccchhhhcccCch-hhCChhHhcccc--hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            5677777777777 667777777777  7777777777777777777776655             55555555555554


Q ss_pred             hhhcCCCCccEEEeecCCCCC
Q 047190          306 KFLGNMSSLKRLVFSYNELRG  326 (1025)
Q Consensus       306 ~~l~~l~~L~~L~Ls~n~l~~  326 (1025)
                      ..   .++|++|++++|.+++
T Consensus        88 ~~---~~~L~~L~l~~n~l~~  105 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE  105 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS
T ss_pred             CC---cCCCCEEEccCCcCCc
Confidence            42   2445555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.3e-38  Score=350.71  Aligned_cols=292  Identities=30%  Similarity=0.450  Sum_probs=195.5

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEECCCCCCCCCCcccc--ccccc
Q 047190           34 SCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCK--WRGVRCSNKT--GHVLGLDLRASSDSPVDALKG--TINPS  107 (1025)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~~~~~~~l~g--~l~~~  107 (1025)
                      .|.++|++||++||+++.+|. .+++|.   .+.+||.  |.||+|+..+  ++|+.|+|++      +.+.|  .+|+.
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------~~l~~~~~~~~~   71 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC------CCccCCcccChh
Confidence            699999999999999998876 789997   4678998  9999998655  8999999998      67888  88889


Q ss_pred             CcCCCCCcEEEccC-CCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCC
Q 047190          108 LLKLQHLTYLDLSW-NNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS  186 (1025)
Q Consensus       108 l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~  186 (1025)
                      +.++++|++|+|++ |.+.+. +|..++++++|++|+|++|++++.+|..++++++|++|++++|.+.. ..+..+..+ 
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l-  148 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSL-  148 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGC-
T ss_pred             HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcC-
Confidence            99999999999995 888875 88888889999999999998888888888888888888887776511 111112222 


Q ss_pred             CCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcC-CC
Q 047190          187 SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVS-SN  265 (1025)
Q Consensus       187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~~  265 (1025)
                                                                          ++|++|++++|.+++.+|..+..+. . 
T Consensus       149 ----------------------------------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~~-  175 (313)
T 1ogq_A          149 ----------------------------------------------------PNLVGITFDGNRISGAIPDSYGSFSKL-  175 (313)
T ss_dssp             ----------------------------------------------------TTCCEEECCSSCCEEECCGGGGCCCTT-
T ss_pred             ----------------------------------------------------CCCCeEECcCCcccCcCCHHHhhhhhc-
Confidence                                                                3334444444444434444444444 4 


Q ss_pred             CccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCC
Q 047190          266 LVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSS  344 (1025)
Q Consensus       266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~  344 (1025)
                       |++|++++|.+++.+|..++.++ |++|++++|.+++ .|..+..+++|++|++++                       
T Consensus       176 -L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-----------------------  230 (313)
T 1ogq_A          176 -FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK-----------------------  230 (313)
T ss_dssp             -CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS-----------------------
T ss_pred             -CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC-----------------------
Confidence             66666666666666666665554 5666665555554 444445555455554444                       


Q ss_pred             CcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCC
Q 047190          345 LEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD  424 (1025)
Q Consensus       345 L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  424 (1025)
                              |.+++.+|.+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..  ..+++|+.+++++
T Consensus       231 --------N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~  300 (313)
T 1ogq_A          231 --------NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYAN  300 (313)
T ss_dssp             --------SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCS
T ss_pred             --------CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcC
Confidence                    444444444445555555555555555555555555566666666666665555542  4555555555555


Q ss_pred             Cc
Q 047190          425 NS  426 (1025)
Q Consensus       425 n~  426 (1025)
                      |+
T Consensus       301 N~  302 (313)
T 1ogq_A          301 NK  302 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-34  Score=337.67  Aligned_cols=410  Identities=22%  Similarity=0.200  Sum_probs=231.5

Q ss_pred             CcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhh
Q 047190          129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVL  208 (1025)
Q Consensus       129 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l  208 (1025)
                      .+..++++++|++|++++|.+++ +| .++.+++|++|++++|++...    .++.+++|++|++++|.+++++     +
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~-----~  102 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLD-----V  102 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC-----C
T ss_pred             cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceee-----c
Confidence            44566667777777777777765 34 466777777777777765332    1556666666666666666542     4


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCC
Q 047190          209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHM  288 (1025)
Q Consensus       209 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l  288 (1025)
                      +++++|++|++++|.+++..     +..+ ++|++|++++|.+++                          .   .++.+
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~-----~~~l-~~L~~L~l~~N~l~~--------------------------l---~l~~l  147 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD-----VSQN-PLLTYLNCARNTLTE--------------------------I---DVSHN  147 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC-----CTTC-TTCCEEECTTSCCSC--------------------------C---CCTTC
T ss_pred             CCCCcCCEEECCCCcCCeec-----CCCC-CcCCEEECCCCccce--------------------------e---ccccC
Confidence            55555555555555555431     1122 444444444444443                          2   13444


Q ss_pred             CCCcEEEccCCCCCC-cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCC
Q 047190          289 ASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPS  367 (1025)
Q Consensus       289 ~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~  367 (1025)
                      ++|++|++++|...+ +  .+..+++|++|++++|.+++. |  +..++       +|+.|++++|.+++.  .++.+++
T Consensus       148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~-------~L~~L~l~~N~l~~~--~l~~l~~  213 (457)
T 3bz5_A          148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNK-------LLNRLNCDTNNITKL--DLNQNIQ  213 (457)
T ss_dssp             TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCT-------TCCEEECCSSCCSCC--CCTTCTT
T ss_pred             CcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCC-------CCCEEECcCCcCCee--ccccCCC
Confidence            445555555542222 3  234445555555555554442 1  22222       555555555555543  2555566


Q ss_pred             CcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeecc
Q 047190          368 LQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLG  447 (1025)
Q Consensus       368 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~  447 (1025)
                      |++|++++|++++ +|  ++.+++|+.|++++|.+++..    ...+++|+.|+++.|.              |+.++++
T Consensus       214 L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~--------------L~~L~l~  272 (457)
T 3bz5_A          214 LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD--------------LLEIDLT  272 (457)
T ss_dssp             CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCC--------------CSCCCCT
T ss_pred             CCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCC--------------CCEEECC
Confidence            6666666666654 33  555666666666666665432    3345566666655542              2233333


Q ss_pred             CCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCcc
Q 047190          448 SCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG  527 (1025)
Q Consensus       448 ~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g  527 (1025)
                      +|...+.+|  +..+                         ++|+.|++++|...+                         
T Consensus       273 ~n~~~~~~~--~~~l-------------------------~~L~~L~Ls~n~~l~-------------------------  300 (457)
T 3bz5_A          273 HNTQLIYFQ--AEGC-------------------------RKIKELDVTHNTQLY-------------------------  300 (457)
T ss_dssp             TCTTCCEEE--CTTC-------------------------TTCCCCCCTTCTTCC-------------------------
T ss_pred             CCccCCccc--cccc-------------------------ccCCEEECCCCcccc-------------------------
Confidence            333322222  1111                         245555555554433                         


Q ss_pred             CCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccccc
Q 047190          528 PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLR  607 (1025)
Q Consensus       528 ~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  607 (1025)
                      .+|....+++.|++++|              ++|++|++++|++++. +  +.++++|+.|++++|++++        ++
T Consensus       301 ~l~~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~  355 (457)
T 3bz5_A          301 LLDCQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FS  355 (457)
T ss_dssp             EEECTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CT
T ss_pred             eeccCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------cc
Confidence            33333456677776665              5689999999999984 3  8889999999999999986        24


Q ss_pred             CCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcc--cccccC-----
Q 047190          608 SIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPF--QLCYLS-----  680 (1025)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~-----  680 (1025)
                      .|..|++++|.+.|.     ..+..|..+++++|+++|.+|..+.....++....-..+........  .+.+++     
T Consensus       356 ~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~  430 (457)
T 3bz5_A          356 SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA  430 (457)
T ss_dssp             TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCE
T ss_pred             ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCce
Confidence            566778899999876     34567888899999999999988765555665554443322211111  111111     


Q ss_pred             cccEEEccccccccccCcccc
Q 047190          681 HIQILDLSLNNISGIIPKCFH  701 (1025)
Q Consensus       681 ~L~~L~Ls~N~l~~~~p~~~~  701 (1025)
                      -+.....++|.++|.++..+.
T Consensus       431 ~~y~~~~~~~~fsG~i~~p~~  451 (457)
T 3bz5_A          431 VTYTFTSENGAIVGTVTTPFE  451 (457)
T ss_dssp             ECEEEECTTSSEEEEEEEEBC
T ss_pred             EEEEEecCCcEEeeEeccccc
Confidence            122333456777777766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1e-34  Score=337.94  Aligned_cols=182  Identities=19%  Similarity=0.153  Sum_probs=123.9

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|++++ +|  +..+++|+.|++++|++++..   +..+++|+.|++++|              +|+.|++
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l  271 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDL  271 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCC
T ss_pred             CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEEC
Confidence            456666666666665 34  556666777777777666543   234556666666554              2445566


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|++.|.+|.  . .+++|++|++++|+..+.+|.   ..++|+.|++++|                            
T Consensus       272 ~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------------------------  317 (457)
T 3bz5_A          272 THNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------------------------  317 (457)
T ss_dssp             TTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------------
T ss_pred             CCCccCCcccc--c-ccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------------
Confidence            66666655552  2 456666666666665555553   2234444444443                            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                      +.|+.|++++|++++. +  +++++.|+.|++++|++++        +
T Consensus       318 --------------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l  354 (457)
T 3bz5_A          318 --------------------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------F  354 (457)
T ss_dssp             --------------------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------C
T ss_pred             --------------------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------c
Confidence                                            2348899999999995 3  8999999999999999997        2


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG  842 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~  842 (1025)
                      +.|+.|++++|.++|.     ..+..|+.+|+++|+|+|.||..
T Consensus       355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            4677889999999987     24556788999999999999974

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-35  Score=324.97  Aligned_cols=259  Identities=34%  Similarity=0.575  Sum_probs=245.0

Q ss_pred             CcccEEEccCccccc--cCCCcccCCCCCCEEEcCC-CcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccE
Q 047190          559 HLLTYLDLSNNLLSG--RLPDCWFQFDSLAILNLAN-NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTL  635 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  635 (1025)
                      ..++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            468999999999999  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccC-cccEEEccccccccccCccccCccccccccccCc
Q 047190          636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS-HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL  714 (1025)
Q Consensus       636 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~  714 (1025)
                      |++++|++++.+|..+. .+++|++|+|++|++++.+|..+..++ +|++|++++|++++.+|..++.++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999999999988 699999999999999999999999998 999999999999999998887654 4        


Q ss_pred             ccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCC
Q 047190          715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR  794 (1025)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  794 (1025)
                                                             +.|+|++|++++.+|..+..+++|+.|+|++|++++.+|. 
T Consensus       200 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-  239 (313)
T 1ogq_A          200 ---------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-  239 (313)
T ss_dssp             ---------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred             ---------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence                                                   8899999999999999999999999999999999988887 


Q ss_pred             CCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCC
Q 047190          795 IGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKC  868 (1025)
Q Consensus       795 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C  868 (1025)
                      ++.+++|++|||++|+++|.+|..+..+++|++||+++|+++|.+|...++..+....+.|||++||.|.. .|
T Consensus       240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            88999999999999999999999999999999999999999999999888888888889999999998876 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.7e-33  Score=327.57  Aligned_cols=142  Identities=23%  Similarity=0.381  Sum_probs=79.0

Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE  346 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~  346 (1025)
                      ++.|+++++.+.. +| .+..+++|++|++++|.++++|. +.++++|++|++++|.+.+..+  +..++       +|+
T Consensus        48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-------~L~  115 (466)
T 1o6v_A           48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-------NLT  115 (466)
T ss_dssp             CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-------TCC
T ss_pred             ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-------CCC
Confidence            6666666666653 23 25566666666666666666554 6666666666666666665443  44444       666


Q ss_pred             EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190          347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS  426 (1025)
Q Consensus       347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (1025)
                      +|++++|.+++.. .+..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..   .+.++++|++|++++|.
T Consensus       116 ~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~---~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          116 GLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK---PLANLTTLERLDISSNK  188 (466)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG---GGTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch---hhccCCCCCEEECcCCc
Confidence            6666666665432 255666666666666665532 2 35555566666554 3333221   14455555555555554


Q ss_pred             c
Q 047190          427 L  427 (1025)
Q Consensus       427 l  427 (1025)
                      +
T Consensus       189 l  189 (466)
T 1o6v_A          189 V  189 (466)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-33  Score=328.80  Aligned_cols=214  Identities=24%  Similarity=0.350  Sum_probs=152.1

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+++..|  ++.+++|++|++++|++++.  ..+..+++|+.|++
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  250 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence            4456666666665532  235566667777777776665444  55566777777777776643  34667777777777


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|++++..|  +. .+++|++|++++|++++..+  +..+++|+.|++++|++++..|  ++.+++|            
T Consensus       251 ~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L------------  311 (466)
T 1o6v_A          251 ANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL------------  311 (466)
T ss_dssp             CSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC------------
T ss_pred             CCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC------------
Confidence            7777774433  33 57777777777777776544  6777778888888887776543  3343333            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.|+|++|++++..|  +..+++|+.|++++|++++.  ..++.+
T Consensus       312 -----------------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l  352 (466)
T 1o6v_A          312 -----------------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANL  352 (466)
T ss_dssp             -----------------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred             -----------------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccC
Confidence                                               778888888887766  67888888888888888875  468888


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      ++|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       353 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            899999999999988877  78888999999999998873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=337.35  Aligned_cols=258  Identities=17%  Similarity=0.138  Sum_probs=191.5

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.|++
T Consensus       104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            45666777777776666667777777777777777777766677777777777777777777666666777777777777


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|.+.+..+..+. .+++|++|++++|.+.+.+|.......+|+.|+|++|++++..+..+..+++|            
T Consensus       184 ~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  250 (477)
T 2id5_A          184 RHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------  250 (477)
T ss_dssp             ESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------
T ss_pred             CCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------
Confidence            77777744333443 57777777777777776666666666677777777777775444555555554            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.|||++|++++..+..+.++++|+.|+|++|++++..|..|+.+
T Consensus       251 -----------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          251 -----------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             -----------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             -----------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence                                               678888888887777778888899999999999999999999999


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCC
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPL  864 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~  864 (1025)
                      ++|+.|||++|++++..+..|..+++|+.|++++|++.|..+....+.......+.++...|..|.
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            999999999999999888888999999999999999998765432222233345677777776553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=321.01  Aligned_cols=235  Identities=19%  Similarity=0.120  Sum_probs=189.1

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      +++|+.|++++|.+++..+..|.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|+
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence            35677888888888877777888888888888888888877667788888888888888888888888888889999999


Q ss_pred             CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      +++|.+.+.+|...+ ...+|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|..+++|           
T Consensus       207 l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------  274 (477)
T 2id5_A          207 ISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL-----------  274 (477)
T ss_dssp             EECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC-----------
T ss_pred             CCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC-----------
Confidence            998888878888777 46689999999999986655778889999999999999988777777766665           


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                          +.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..
T Consensus       275 ------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  318 (477)
T 2id5_A          275 ------------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS  318 (477)
T ss_dssp             ------------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred             ------------------------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence                                                78999999999988999999999999999999999888888899


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      +++|+.|+|++|.+++..+.. .-...+..+++..+...+.-|.
T Consensus       319 l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          319 VGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             GGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             CcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence            999999999999998653321 1112233345566666665553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=9.6e-32  Score=308.14  Aligned_cols=238  Identities=22%  Similarity=0.215  Sum_probs=159.4

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+++.     ...++|+.|++
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l  212 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  212 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEEC
Confidence            4466666666666655566666666777777777766643   244556677777777766532     23356777777


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|++. .+|..   ..++|++|++++|.+++.  ..+..+++|++|+|++|.+++..|..+..+++|            
T Consensus       213 ~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  274 (390)
T 3o6n_A          213 SHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  274 (390)
T ss_dssp             CSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             CCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------
Confidence            777776 44443   245677777777777653  466777777777777777777667666665555            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..++.+
T Consensus       275 -----------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l  317 (390)
T 3o6n_A          275 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  317 (390)
T ss_dssp             -----------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -----------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence                                               667777777765 3555567778888888888887 456667778


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCC
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      ++|+.|+|++|++++. |  +..++.|+.|++++|++.+.... ..+..+....+.+++..|+.+
T Consensus       318 ~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          318 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            8888888888888765 2  66778888999999998875322 123444455567777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=7.4e-32  Score=326.23  Aligned_cols=238  Identities=22%  Similarity=0.221  Sum_probs=182.2

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..   +..+++|+.|++++|.+++     +...++|+.|++
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~l  218 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDA  218 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEEC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeec
Confidence            55777777777777777777777888888888888777642   4556778888888887764     234567888888


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|.++ .+|..+   .++|+.|+|++|.+++  +..+..+++|+.|+|++|.+++.+|..|+.+++|            
T Consensus       219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------  280 (597)
T 3oja_B          219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------  280 (597)
T ss_dssp             CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred             cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence            888887 444433   4678888888888876  3677888888888888888888888877776666            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.|+|++|++++ +|..+..++.|+.|+|++|.++ .+|..++.+
T Consensus       281 -----------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          281 -----------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             -----------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -----------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence                                               778888888876 4666677888999999999988 577778888


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCC
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      ++|+.|||++|.+++..   +..++.|+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus       324 ~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          324 DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            99999999999998763   66778899999999999987432 235556666788999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.9e-30  Score=297.36  Aligned_cols=314  Identities=21%  Similarity=0.212  Sum_probs=222.0

Q ss_pred             cCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190          109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL  188 (1025)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  188 (1025)
                      ..++++++|++++|.++.. .+..+..+++|++|+|++|.+++..|..++++++|++|++++|.+ ....+..++++++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCC
Confidence            4578999999999998853 234478899999999999999877777899999999999999987 33445668889999


Q ss_pred             CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCcc
Q 047190          189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD  268 (1025)
Q Consensus       189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~  268 (1025)
                      ++|++++|.++.++.  ..+.++++|++|++++|.+.+..+.  .+..+ ++|++|++++|.+++.   .+..++.  |+
T Consensus       120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~--L~  189 (390)
T 3o6n_A          120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDD--TFQAT-TSLQNLQLSSNRLTHV---DLSLIPS--LF  189 (390)
T ss_dssp             CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTT--TTSSC-TTCCEEECCSSCCSBC---CGGGCTT--CS
T ss_pred             CEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChh--hccCC-CCCCEEECCCCcCCcc---ccccccc--cc
Confidence            999999998887653  3467888888888888888877664  23333 7888888888887753   2344555  77


Q ss_pred             EEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEE
Q 047190          269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL  348 (1025)
Q Consensus       269 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L  348 (1025)
                      +|++++|.+++     +...++|++|++++|.++.+|...  .++|++|++++|.+++.  ..+..++       +|++|
T Consensus       190 ~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-------~L~~L  253 (390)
T 3o6n_A          190 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-------GLVEV  253 (390)
T ss_dssp             EEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-------TCSEE
T ss_pred             eeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-------CccEE
Confidence            78887777764     233457777777777777765432  46777777777777654  3455555       77777


Q ss_pred             EccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCcc
Q 047190          349 YLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSL  427 (1025)
Q Consensus       349 ~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l  427 (1025)
                      ++++|.+++..|. +..+++|++|++++|++++ +|..+..+++|++|++++|.+.+ ++.. +..+++|++|++++|++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERN-QPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGG-HHHHTTCSEEECCSSCC
T ss_pred             ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCcc-ccccCcCCEEECCCCcc
Confidence            7777777766554 6677777777777777763 45555666777777777777763 3332 55666777777777765


Q ss_pred             ccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCCchh
Q 047190          428 TLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP  480 (1025)
Q Consensus       428 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~  480 (1025)
                      +..                         +  +..+++|+.|++++|.+.....
T Consensus       331 ~~~-------------------------~--~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          331 VTL-------------------------K--LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             CCC-------------------------C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             cee-------------------------C--chhhccCCEEEcCCCCccchhH
Confidence            432                         1  3455677778888877765433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.7e-29  Score=284.69  Aligned_cols=305  Identities=23%  Similarity=0.303  Sum_probs=175.1

Q ss_pred             CCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCC
Q 047190          287 HMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP  366 (1025)
Q Consensus       287 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~  366 (1025)
                      .+++|++|++++|.+..+|. +..+++|++|++++|.+++..+  +..++       +|++|++++|.++. ++.+..++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~-------~L~~L~L~~n~i~~-~~~~~~l~  110 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLV-------KLTNLYIGTNKITD-ISALQNLT  110 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------TCCEEECCSSCCCC-CGGGTTCT
T ss_pred             hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCC-------cCCEEEccCCcccC-chHHcCCC
Confidence            34444444554444444432 4444445555555544443322  33333       45555555554442 33445555


Q ss_pred             CCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceeec
Q 047190          367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFL  446 (1025)
Q Consensus       367 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L  446 (1025)
                      +|++|++++|.+++..+  +..+++|++|++++|.....++.  +..+++|++|++++|.+.....              
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--------------  172 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--------------  172 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred             cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--------------
Confidence            55555555555543222  45555555555555544333332  4555555555555554432111              


Q ss_pred             cCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcCc
Q 047190          447 GSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD  526 (1025)
Q Consensus       447 ~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~  526 (1025)
                                  +..+++|+.|++++|.+.+..+  +.. .++|++|++++|.+++.                       
T Consensus       173 ------------~~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~-----------------------  214 (347)
T 4fmz_A          173 ------------IANLTDLYSLSLNYNQIEDISP--LAS-LTSLHYFTAYVNQITDI-----------------------  214 (347)
T ss_dssp             ------------GGGCTTCSEEECTTSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-----------------------
T ss_pred             ------------hccCCCCCEEEccCCccccccc--ccC-CCccceeecccCCCCCC-----------------------
Confidence                        3344445555555555544433  222 22455555555544321                       


Q ss_pred             cCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccc
Q 047190          527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFL  606 (1025)
Q Consensus       527 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  606 (1025)
                                             .+   ...+++|++|++++|.+++..+  +..+++|++|++++|.+++.  +.+..+
T Consensus       215 -----------------------~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l  264 (347)
T 4fmz_A          215 -----------------------TP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL  264 (347)
T ss_dssp             -----------------------GG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred             -----------------------ch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence                                   11   1123567777777777775433  67777888888888877753  457777


Q ss_pred             cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEE
Q 047190          607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILD  686 (1025)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (1025)
                      ++|++|++++|++++.  ..+..+++|+.|++++|++++..|..+. .+++|++|++++|++++..|  +..+++|+.|+
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhccceee
Confidence            8888888888888764  4577888888888888888866666666 68888888888888887666  77888888888


Q ss_pred             ccccccc
Q 047190          687 LSLNNIS  693 (1025)
Q Consensus       687 Ls~N~l~  693 (1025)
                      +++|+++
T Consensus       340 l~~N~i~  346 (347)
T 4fmz_A          340 FANQVIK  346 (347)
T ss_dssp             SSCC---
T ss_pred             hhhhccc
Confidence            8888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.2e-29  Score=282.41  Aligned_cols=284  Identities=26%  Similarity=0.360  Sum_probs=161.1

Q ss_pred             cCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCC
Q 047190          109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL  188 (1025)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L  188 (1025)
                      ..+++|++|+++++.+..  +| .+..+++|++|++++|.+++. |. +.++++|++|++++|.+..   .+.+..+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD---ISALQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---CGGGTTCTTC
T ss_pred             hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC---chHHcCCCcC
Confidence            355666777777776663  33 366667777777777766643 33 6667777777777766522   2346666677


Q ss_pred             CeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCcc
Q 047190          189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD  268 (1025)
Q Consensus       189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~  268 (1025)
                      ++|++++|.++.++.    +.++++|++|++++|......+   .+..+ ++|++|++++|.+.+..+  +..++.  |+
T Consensus       113 ~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~--L~  180 (347)
T 4fmz_A          113 RELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS---PLSNM-TGLNYLTVTESKVKDVTP--IANLTD--LY  180 (347)
T ss_dssp             SEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG---GGTTC-TTCCEEECCSSCCCCCGG--GGGCTT--CS
T ss_pred             CEEECcCCcccCchh----hccCCceeEEECCCCCCccccc---chhhC-CCCcEEEecCCCcCCchh--hccCCC--CC
Confidence            777777766665432    5666666666666664333322   12222 566666666666554322  445555  66


Q ss_pred             EEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEE
Q 047190          269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWL  348 (1025)
Q Consensus       269 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L  348 (1025)
                      +|++++|.+.+..+  +..+++|+.|++++|.+++++. +..+++|++|++++|.+++..+  +..++       +|++|
T Consensus       181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~-------~L~~L  248 (347)
T 4fmz_A          181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLS-------QLTWL  248 (347)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------TCCEE
T ss_pred             EEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCC-------CCCEE
Confidence            66666666554332  5556666666666666655443 5555666666666666554433  33333       56666


Q ss_pred             EccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccc
Q 047190          349 YLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT  428 (1025)
Q Consensus       349 ~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  428 (1025)
                      ++++|.+++ ++.+..+++|++|++++|++++.  ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|+++
T Consensus       249 ~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          249 EIGTNQISD-INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             ECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCC
T ss_pred             ECCCCccCC-ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccc
Confidence            666665553 34455556666666666655543  2355555666666666665544333 3555555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.7e-29  Score=303.71  Aligned_cols=310  Identities=23%  Similarity=0.253  Sum_probs=199.4

Q ss_pred             CCCCcEEEccCCCCCCcch-hhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCC-CCCC
Q 047190          288 MASLRHLDLLSNQLREVPK-FLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-LGGF  365 (1025)
Q Consensus       288 l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-l~~l  365 (1025)
                      +.+++.|++++|.++.+|. .+..+++|++|++++|.+.+..+..+..++       +|++|+|++|.+++..|. ++.+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-------TIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-------TCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-------CCCEEECCCCcCCCCCHHHHcCC
Confidence            4456666666666655543 345555566666655555555444444444       555555555555544443 4555


Q ss_pred             CCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCCCCcccceee
Q 047190          366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIF  445 (1025)
Q Consensus       366 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  445 (1025)
                      ++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+. .|.++++|++|++++|.+++.               
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~---------------  186 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV---------------  186 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC---------------
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc---------------
Confidence            5555555555555543333344555555555555555443332 244455555555554444321               


Q ss_pred             ccCCCCCCCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCccccccCCCCeeecccCcC
Q 047190          446 LGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQF  525 (1025)
Q Consensus       446 L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l  525 (1025)
                               .   +..+++|+.|++++|.+.+..                                              
T Consensus       187 ---------~---~~~l~~L~~L~l~~n~l~~l~----------------------------------------------  208 (597)
T 3oja_B          187 ---------D---LSLIPSLFHANVSYNLLSTLA----------------------------------------------  208 (597)
T ss_dssp             ---------C---GGGCTTCSEEECCSSCCSEEE----------------------------------------------
T ss_pred             ---------C---hhhhhhhhhhhcccCcccccc----------------------------------------------
Confidence                     0   122333444444444333221                                              


Q ss_pred             ccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCccccc
Q 047190          526 DGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSF  605 (1025)
Q Consensus       526 ~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  605 (1025)
                            .+.+|+.|++++|.+....+..    .++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..+..
T Consensus       209 ------~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          209 ------IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             ------CCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ------CCchhheeeccCCccccccccc----CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence                  1234555555555544332221    2568889999998886  367888999999999999999998999999


Q ss_pred             ccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEE
Q 047190          606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQIL  685 (1025)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  685 (1025)
                      +++|++|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|.++. .+++|++|+|++|++++..   +..+++|+.|
T Consensus       277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L  350 (597)
T 3oja_B          277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLK---LSTHHTLKNL  350 (597)
T ss_dssp             CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred             ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence            9999999999999987 4667788999999999999998 7888887 6999999999999998653   6778899999


Q ss_pred             Ecccccccccc
Q 047190          686 DLSLNNISGII  696 (1025)
Q Consensus       686 ~Ls~N~l~~~~  696 (1025)
                      +|++|++++..
T Consensus       351 ~l~~N~~~~~~  361 (597)
T 3oja_B          351 TLSHNDWDCNS  361 (597)
T ss_dssp             ECCSSCEEHHH
T ss_pred             EeeCCCCCChh
Confidence            99999998653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.4e-30  Score=288.04  Aligned_cols=270  Identities=16%  Similarity=0.237  Sum_probs=179.8

Q ss_pred             CCCCHHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCCCCcccceEecC--------CCCcEEEEECCCCCCCCCCcccc
Q 047190           33 ISCLDEEKESLLAFKQGL-IDESGILSSWGRE-DEKRNCCKWRGVRCSN--------KTGHVLGLDLRASSDSPVDALKG  102 (1025)
Q Consensus        33 ~~~~~~~~~~ll~~k~~~-~~~~~~l~~W~~~-~~~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~~~~~~~l~g  102 (1025)
                      ..+..+|++||++||+++ .|+.+.+.+|... ....++|.|.|+.|..        ..++|+.|+|++      +.+. 
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~------n~l~-   94 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS------VPLP-   94 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES------SCCS-
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC------CCch-
Confidence            356788999999999998 4776777889310 1467899999999952        346899999988      5565 


Q ss_pred             cccccCcCCCCCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchh-
Q 047190          103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDW-  181 (1025)
Q Consensus       103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~-  181 (1025)
                      .+|+.+.++++|++|+|++|.++  .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|++.. ..+.. 
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~  170 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEPL  170 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSCS
T ss_pred             hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChhH
Confidence            78888888999999999999998  48888999999999999999998 788889999999999999987532 22333 


Q ss_pred             --------cccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCC
Q 047190          182 --------LSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN  253 (1025)
Q Consensus       182 --------l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  253 (1025)
                              +.++++|++|++++|.++.++   ..+.++++|++|++++|.+.+.++   .+..+ ++|++|++++|.+.+
T Consensus       171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l-~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          171 ASTDASGEHQGLVNLQSLRLEWTGIRSLP---ASIANLQNLKSLKIRNSPLSALGP---AIHHL-PKLEELDLRGCTALR  243 (328)
T ss_dssp             EEEC-CCCEEESTTCCEEEEEEECCCCCC---GGGGGCTTCCEEEEESSCCCCCCG---GGGGC-TTCCEEECTTCTTCC
T ss_pred             hhccchhhhccCCCCCEEECcCCCcCcch---HhhcCCCCCCEEEccCCCCCcCch---hhccC-CCCCEEECcCCcchh
Confidence                    334777777777777766543   345566666666666666554333   12222 555555555555555


Q ss_pred             CCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCC-cchhhcCCCCccEEEeecC
Q 047190          254 SIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE-VPKFLGNMSSLKRLVFSYN  322 (1025)
Q Consensus       254 ~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n  322 (1025)
                      .+|..+..+.+  |++|++++|.+.+.+|..++.+++|++|+|++|.+.+ +|+.++++++|+.+++..+
T Consensus       244 ~~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          244 NYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             BCCCCTTCCCC--CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hhHHHhcCCCC--CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            55555544444  5555555555554555445555555555555544444 4545555555555544443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4e-32  Score=318.95  Aligned_cols=137  Identities=19%  Similarity=0.133  Sum_probs=68.7

Q ss_pred             CcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCcccccC-----CcccccccCCCEEEcccCccccc----CCc
Q 047190          559 HLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFGEI-----PDSMSFLRSIGSLSLYNNSLSGG----LPS  625 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~  625 (1025)
                      +.|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3566666666666543    3444555566666666666554321     11112345556666666655543    344


Q ss_pred             cccCCCCccEEeCCCCcCccccChhhhh----cCCCCcEEEeecCcCccc----CcccccccCcccEEEccccccccc
Q 047190          626 FFMNGSQLTLMDLGKNGLSGEIPTWIGE----SLPNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISGI  695 (1025)
Q Consensus       626 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  695 (1025)
                      .+..+++|++|++++|++++..+..+..    ..++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            4555555555555555554333222221    124555555555555543    233444445555555555555433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.1e-31  Score=311.44  Aligned_cols=385  Identities=21%  Similarity=0.175  Sum_probs=211.4

Q ss_pred             CCCcEEEccCCCCCCCCCcccccCcccccccccccccCCC----CcchhccCCCCCCEEecccCCCCCCCCchhcccCC-
Q 047190          112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG----PIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS-  186 (1025)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~-  186 (1025)
                      ++|++|||++|.++.......+..+++|++|+|++|++++    .++..+..+++|++|+|++|.+...........++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3455666666665543223335556666666666666553    23455555666666666666542211112222333 


Q ss_pred             ---CCCeeeccCCcCCCCc--chHHhhCCCCCCCEEEcCCCCCCCCCCCcccc--cccCCcccEEEccCCCCCCCC----
Q 047190          187 ---SLRYLDLADCKLSKFS--NWVQVLSNLRSLTNLYLGYCDLPPISTPSLLH--INYSKSLEVIDLSNNYLTNSI----  255 (1025)
Q Consensus       187 ---~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~----  255 (1025)
                         +|++|++++|.++...  .++..+.++++|++|++++|.+.+.....+..  ....++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               4666666666655321  33455666666666666666554322211110  111145666666666665533    


Q ss_pred             chhhhhcCCCCccEEEcCCCCCCCCchhhhh-----CCCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeecCCCC
Q 047190          256 YPWLFNVSSNLVDHIDLGSNQLHGSIPLAFG-----HMASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSYNELR  325 (1025)
Q Consensus       256 ~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~  325 (1025)
                      +..+..++.  |++|++++|.+.+..+..+.     ..++|++|++++|.++.     ++..+..+++|++|++++|.+.
T Consensus       163 ~~~l~~~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          163 ASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHCTT--CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHhhCCC--CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence            333344455  66666666666544333332     24566666666666665     3555666666666666666665


Q ss_pred             CcchHHhhhcCCCCCCCCCCcEEEccccccccc----cCC-CCCCCCCcEEEeecccccCccccccccc-----CCccee
Q 047190          326 GELSEFIQNVSSGSTKNSSLEWLYLAFNEITGT----IPD-LGGFPSLQILSLENNRLTGTISKSIGQL-----SKLELL  395 (1025)
Q Consensus       326 ~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~----~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L  395 (1025)
                      +.....+....  ...+++|++|++++|.++..    ++. +..+++|++|++++|.+++..+..+...     ++|++|
T Consensus       241 ~~~~~~l~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          241 DVGMAELCPGL--LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHHHHH--TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             hHHHHHHHHHH--hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            43322221100  00122666666666666542    222 4456666677777666654444333322     467777


Q ss_pred             eccCccccccc----chhhhcCCCCCcEEECCCCccccccccCCC-----CCcccceeeccCCCCCC----CCchhhhcC
Q 047190          396 LLSGNSLRGVI----SEALFSNLSSLDTLQLSDNSLTLKFSHDWT-----PPFQLFNIFLGSCKIGP----RFPKWLQSQ  462 (1025)
Q Consensus       396 ~L~~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~L~~~~l~~----~~p~~l~~~  462 (1025)
                      ++++|.+++..    +. .+..+++|++|++++|.++......+.     +.++|+.|++++|.++.    .+|..+..+
T Consensus       319 ~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  397 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  397 (461)
T ss_dssp             ECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             EcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence            77777666432    22 245567777777777766543322221     24567777777777665    567778888


Q ss_pred             CcccEEEccCCCCCCchhhhhhhcc----ccceEEEccCccCC
Q 047190          463 NQTVALDVSNAGISDIVPDWFWDLT----NQLYYLNLSNNEMK  501 (1025)
Q Consensus       463 ~~L~~L~Ls~n~i~~~~~~~~~~~~----~~L~~L~Ls~N~l~  501 (1025)
                      ++|+.|++++|.+++.....+....    .+|+.|++.++.+.
T Consensus       398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            8899999999988876555554322    25777777776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.9e-28  Score=274.03  Aligned_cols=220  Identities=22%  Similarity=0.205  Sum_probs=156.5

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--ccCCccccCCCCccEE
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L  636 (1025)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.++  +..+..+..+ +|+.|
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L  177 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL  177 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred             CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence            34455555555554 3333322  45666666666665554455566666666666666664  3555666666 77777


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI  716 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~  716 (1025)
                      ++++|+++ .+|..+.   ++|++|++++|++++..+..+..+++|+.|+|++|++++..|..++.+++|          
T Consensus       178 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  243 (332)
T 2ft3_A          178 RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL----------  243 (332)
T ss_dssp             BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC----------
T ss_pred             ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC----------
Confidence            77777777 4666543   578888888888887777778888888888888888887777666665555          


Q ss_pred             ccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCC
Q 047190          717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIG  796 (1025)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  796 (1025)
                                                           +.|+|++|+++ .+|..+..++.|+.|++++|++++..+..|.
T Consensus       244 -------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          244 -------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             -------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             -------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence                                                 77888888887 6777788889999999999999988777776


Q ss_pred             CC------CCccEEeCCCCcCC--CcCcccccCCCCCCEEECcCCc
Q 047190          797 QL------KSLDFLDLSRNHFF--GGIPSSLSRLRLLSVMDLSYNN  834 (1025)
Q Consensus       797 ~l------~~L~~LdLs~N~l~--g~ip~~l~~l~~L~~Ldls~N~  834 (1025)
                      ..      .+|+.|++++|.++  +..|..+..++.|+.+++++|+
T Consensus       286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            53      67899999999998  7788889999999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.9e-28  Score=271.34  Aligned_cols=219  Identities=24%  Similarity=0.229  Sum_probs=140.5

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCccc--ccCCccccCCCCccEEeC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS--GGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L  638 (1025)
                      |++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.  +..+..+.++++|++|++
T Consensus       102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            444444444444 2232222  45555555555555544444555555555555555553  245556666666677777


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|+++ .+|..+   .++|++|++++|++++..|..+..+++|+.|+|++|.+++..|..+..+++|            
T Consensus       179 ~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------  242 (330)
T 1xku_A          179 ADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------------  242 (330)
T ss_dssp             CSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC------------
T ss_pred             CCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC------------
Confidence            777666 455544   2567777777777776666777777777777777777776666555555444            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC-
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ-  797 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~-  797 (1025)
                                                         +.|+|++|+++ .+|..+..++.|++|+|++|++++..+..|.. 
T Consensus       243 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          243 -----------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             -----------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             -----------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence                                               66777777776 56667777888888888888888777766653 


Q ss_pred             -----CCCccEEeCCCCcCCC--cCcccccCCCCCCEEECcCCc
Q 047190          798 -----LKSLDFLDLSRNHFFG--GIPSSLSRLRLLSVMDLSYNN  834 (1025)
Q Consensus       798 -----l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~Ldls~N~  834 (1025)
                           ...++.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                 3678889999998863  567788888889999988885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=5.7e-27  Score=261.85  Aligned_cols=248  Identities=21%  Similarity=0.244  Sum_probs=141.9

Q ss_pred             CCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEE
Q 047190          533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL  612 (1025)
Q Consensus       533 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  612 (1025)
                      +++++.|++++|++++..+... ..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L  126 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQEL  126 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEE
T ss_pred             CCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEE
Confidence            3455666666666555433211 23455666666666666555666666666666666666665 3343332  566666


Q ss_pred             EcccCcccccCCccccCCCCccEEeCCCCcCcc--ccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccc
Q 047190          613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG--EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN  690 (1025)
Q Consensus       613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  690 (1025)
                      ++++|++++..+..|.++++|++|++++|+++.  ..+..+. .+++|++|++++|.++. +|..+.  ++|+.|++++|
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n  202 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGN  202 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTS
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCC
Confidence            666666665555556666666666666666642  3344443 46666666666666653 333332  55666666666


Q ss_pred             ccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhh
Q 047190          691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE  770 (1025)
Q Consensus       691 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~  770 (1025)
                      ++++..|..+..+++|                                               +.|+|++|++++..+..
T Consensus       203 ~l~~~~~~~~~~l~~L-----------------------------------------------~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          203 KITKVDAASLKGLNNL-----------------------------------------------AKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             CCCEECTGGGTTCTTC-----------------------------------------------CEEECCSSCCCEECTTT
T ss_pred             cCCccCHHHhcCCCCC-----------------------------------------------CEEECCCCcCceeChhh
Confidence            6665555555544444                                               55666666666655556


Q ss_pred             HhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccC------CCCCCEEECcCCccc
Q 047190          771 IMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR------LRLLSVMDLSYNNFS  836 (1025)
Q Consensus       771 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~------l~~L~~Ldls~N~l~  836 (1025)
                      +..+++|++|+|++|+++ .+|..++.+++|++|+|++|++++..+..+..      ...|+.+++++|++.
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            666666666666666666 55555666666666666666666555554432      245556666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1e-27  Score=266.89  Aligned_cols=227  Identities=19%  Similarity=0.254  Sum_probs=202.8

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      .+.++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            367899999999998 77888888999999999999998 88888999999999999999998 7788899999999999


Q ss_pred             CCCCcCccccChhhh--------hcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccc
Q 047190          638 LGKNGLSGEIPTWIG--------ESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE  709 (1025)
Q Consensus       638 Ls~N~l~g~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  709 (1025)
                      +++|++.+.+|..+.        ..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|..++.+++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence            999988889998774        14899999999999998 788889999999999999999995 55566666655   


Q ss_pred             cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccc
Q 047190          710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG  789 (1025)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g  789 (1025)
                                                                  +.|+|++|++.+.+|..++.+++|+.|+|++|++.+
T Consensus       232 --------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          232 --------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             --------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             --------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence                                                        889999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccc
Q 047190          790 QITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS  836 (1025)
Q Consensus       790 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~  836 (1025)
                      .+|..++.+++|++|||++|++.|.+|+.+.++++|+.+++..|.+.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999877654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.6e-27  Score=263.61  Aligned_cols=287  Identities=20%  Similarity=0.213  Sum_probs=172.3

Q ss_pred             CCcEEEccccccccccCC-CCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEEC
Q 047190          344 SLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQL  422 (1025)
Q Consensus       344 ~L~~L~L~~n~l~~~~p~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  422 (1025)
                      +++.++++++.++ .+|. +  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+. .|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence            3444444444444 2222 2  23455555555555544444555555555555555555543333 2555555555555


Q ss_pred             CCCccccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCC--chhhhhhhccccceEEEccCccC
Q 047190          423 SDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISD--IVPDWFWDLTNQLYYLNLSNNEM  500 (1025)
Q Consensus       423 s~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~Ls~N~l  500 (1025)
                      ++|.++......+   .+|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+...  +|++|++++   
T Consensus       110 ~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~---  181 (332)
T 2ft3_A          110 SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISE---  181 (332)
T ss_dssp             CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCS---
T ss_pred             CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcC---
Confidence            5555542211111   344444444444444444556666666666666666542  333333222  344444444   


Q ss_pred             CCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCccc
Q 047190          501 KGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWF  580 (1025)
Q Consensus       501 ~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  580 (1025)
                                                                 |++++.....    .++|++|++++|.+++..+..+.
T Consensus       182 -------------------------------------------n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~  214 (332)
T 2ft3_A          182 -------------------------------------------AKLTGIPKDL----PETLNELHLDHNKIQAIELEDLL  214 (332)
T ss_dssp             -------------------------------------------SBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSST
T ss_pred             -------------------------------------------CCCCccCccc----cCCCCEEECCCCcCCccCHHHhc
Confidence                                                       4333321111    14678888888888877778888


Q ss_pred             CCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhc------
Q 047190          581 QFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGES------  654 (1025)
Q Consensus       581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~------  654 (1025)
                      .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|...+..      
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSS
T ss_pred             CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHccccccccc
Confidence            8888888888888888877778888888888888888888 67777888888888888888888 444333212      


Q ss_pred             CCCCcEEEeecCcCc--ccCcccccccCcccEEEccccc
Q 047190          655 LPNLVVLSLRSNKFH--GNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       655 l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      .+.|+.|++++|++.  +..|..+..+++|+.+++++|+
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            366888888888887  6677788888888888888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.6e-27  Score=261.63  Aligned_cols=234  Identities=24%  Similarity=0.250  Sum_probs=203.4

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc--CCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE--IPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      ++|++|++++|.++...+..|.++++|++|++++|.++..  .+..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            5688999999999865556688999999999999998743  35667778999999999999984 66678899999999


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc-ccCccccCccccccccccCcc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG-IIPKCFHNFTAMTKEKSSNLS  715 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~  715 (1025)
                      ++++|++++..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|         
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------  177 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------  177 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence            9999999844332333479999999999999999999999999999999999999987 577777776666         


Q ss_pred             cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190          716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI  795 (1025)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  795 (1025)
                                                            +.|||++|++++..|..+..+++|++|+|++|++++..+..+
T Consensus       178 --------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          178 --------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             --------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             --------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence                                                  889999999999999999999999999999999999888889


Q ss_pred             CCCCCccEEeCCCCcCCCcCcccccCC-CCCCEEECcCCcccccCC
Q 047190          796 GQLKSLDFLDLSRNHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       796 ~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip  840 (1025)
                      +.+++|++|||++|++++.+|..+..+ ++|++|++++|+++|..+
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            999999999999999999999999998 599999999999998654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.6e-26  Score=269.93  Aligned_cols=232  Identities=22%  Similarity=0.227  Sum_probs=206.6

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      +.+++|+|++|++++..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            56899999999999888999999999999999999999988899999999999999999999888888999999999999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecC-cCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSN-KFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      ++|+++ .+|...+..+++|++|+|++| .+....+..+..+++|++|+|++|++++. | .+..+++            
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~------------  219 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG------------  219 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT------------
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc------------
Confidence            999998 666655558999999999995 55544455789999999999999999854 4 2444333            


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                         |+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..
T Consensus       220 -----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          220 -----------------------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             -----------------------------------CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             -----------------------------------ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence                                               389999999999999999999999999999999999999999999


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip  840 (1025)
                      +++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            9999999999999999888899999999999999999987654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1e-28  Score=299.67  Aligned_cols=39  Identities=13%  Similarity=0.088  Sum_probs=21.9

Q ss_pred             hhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeec
Q 047190          283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSY  321 (1025)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~  321 (1025)
                      ..+..+++|++|++++|.+.++|..+..+++|++|+++.
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence            334455556666666655555555555555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-27  Score=268.29  Aligned_cols=273  Identities=20%  Similarity=0.194  Sum_probs=172.9

Q ss_pred             ecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc
Q 047190          519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE  598 (1025)
Q Consensus       519 ~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  598 (1025)
                      +++++.++......++++++|++++|++++..+.. ...+++|++|++++|.+++..|..|.++++|++|++++|++++.
T Consensus        37 ~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           37 KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             ECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             eCCCCCcccccccccccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            34444444332233456666666666666543321 12356666677776666666666666666677777776666654


Q ss_pred             CCcccccccCCCEEEcccCcccccCC-ccccCCCCccEEeCCCCc-CccccChhhhhcCCCCcEEEeecCcCcccCcccc
Q 047190          599 IPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTLMDLGKNG-LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQL  676 (1025)
Q Consensus       599 ~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l  676 (1025)
                      .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|. +.+..|..+. .+++|++|++++|++++..|..+
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTT
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHH
Confidence            44446666666777776666664333 356666667777776663 4422233333 56666666776666666666666


Q ss_pred             cccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEE
Q 047190          677 CYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKII  756 (1025)
Q Consensus       677 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  756 (1025)
                      ..+++|++|++++|.++...+..+..                                               ++.|+.|
T Consensus       195 ~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------~~~L~~L  227 (353)
T 2z80_A          195 KSIQNVSHLILHMKQHILLLEIFVDV-----------------------------------------------TSSVECL  227 (353)
T ss_dssp             TTCSEEEEEEEECSCSTTHHHHHHHH-----------------------------------------------TTTEEEE
T ss_pred             hccccCCeecCCCCccccchhhhhhh-----------------------------------------------cccccEE
Confidence            66666666666666664222211222                                               3344788


Q ss_pred             EcccCCCCCcChhhHh---hcccCCeEeccCccccc----cCCCCCCCCCCccEEeCCCCcCCCcCccc-ccCCCCCCEE
Q 047190          757 DLSSNKLGGKVLEEIM---DLVGLVALNLSNNNLTG----QITPRIGQLKSLDFLDLSRNHFFGGIPSS-LSRLRLLSVM  828 (1025)
Q Consensus       757 dLs~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L  828 (1025)
                      ++++|++++..+..+.   ....++.++|++|.+++    .+|..++.+++|++|||++|+++. +|.. +..+++|++|
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L  306 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI  306 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence            8888888876655443   35667788888888876    367778888889999999999884 5555 5888889999


Q ss_pred             ECcCCcccccCCC
Q 047190          829 DLSYNNFSGKIPK  841 (1025)
Q Consensus       829 dls~N~l~g~ip~  841 (1025)
                      ++++|++.|.+|.
T Consensus       307 ~L~~N~~~~~~~~  319 (353)
T 2z80_A          307 WLHTNPWDCSCPR  319 (353)
T ss_dssp             ECCSSCBCCCHHH
T ss_pred             EeeCCCccCcCCC
Confidence            9999998887763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=267.54  Aligned_cols=232  Identities=21%  Similarity=0.220  Sum_probs=204.5

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      +.++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56889999999999888899999999999999999999888889999999999999999999887788999999999999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCc-CcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNK-FHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      ++|+++ .+|...+..+++|++|+|++|+ +....+..+.++++|++|+|++|+++ .+|. +..+++            
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~------------  208 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIK------------  208 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSS------------
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcc------------
Confidence            999998 5665555579999999999954 54444557899999999999999998 4442 333333            


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                         |+.|||++|++++..|..|.++++|+.|+|++|++++..|..|..
T Consensus       209 -----------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          209 -----------------------------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             -----------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             -----------------------------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence                                               489999999999999999999999999999999999999999999


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip  840 (1025)
                      +++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            9999999999999999988899999999999999999987643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.1e-27  Score=256.35  Aligned_cols=229  Identities=20%  Similarity=0.131  Sum_probs=195.2

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            57888888887 455543  468889999999888877788888889999999999888888888888999999999999


Q ss_pred             c-CccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190          642 G-LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY  720 (1025)
Q Consensus       642 ~-l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  720 (1025)
                      + +++..|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..++.+++|              
T Consensus        91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  155 (285)
T 1ozn_A           91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (285)
T ss_dssp             TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence            7 6633355555 68899999999999988888888889999999999999987766667666665              


Q ss_pred             ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190          721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS  800 (1025)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  800 (1025)
                                                       +.|+|++|++++..+..+..+++|+.|+|++|++++.+|..++.+++
T Consensus       156 ---------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ---------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence                                             78999999999877778999999999999999999999999999999


Q ss_pred             ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      |+.|||++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            99999999999998888899999999999999999987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3e-27  Score=261.19  Aligned_cols=274  Identities=22%  Similarity=0.256  Sum_probs=228.3

Q ss_pred             eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcccccc--CCCcccCCCCCCEEEcCCCcc
Q 047190          518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGR--LPDCWFQFDSLAILNLANNSF  595 (1025)
Q Consensus       518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l  595 (1025)
                      ++++++.++......+++++.|++++|+++...+. ....+++|++|++++|.++..  .+..+..+++|++|++++|.+
T Consensus        12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i   90 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV   90 (306)
T ss_dssp             EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred             EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence            55566555544444567999999999999854433 233578999999999999843  367778899999999999999


Q ss_pred             cccCCcccccccCCCEEEcccCcccccCC-ccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcc-cCc
Q 047190          596 FGEIPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG-NIP  673 (1025)
Q Consensus       596 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~-~~p  673 (1025)
                      ++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..|..+. .+++|++|++++|.+.+ .+|
T Consensus        91 ~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEEC
T ss_pred             cc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccch
Confidence            84 66778999999999999999997765 6899999999999999999977777666 79999999999999987 688


Q ss_pred             ccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccce
Q 047190          674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLI  753 (1025)
Q Consensus       674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  753 (1025)
                      ..+..+++|++|++++|++++..|..+..+++|                                               
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------------------------------------  201 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-----------------------------------------------  201 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-----------------------------------------------
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-----------------------------------------------
Confidence            899999999999999999998888888877766                                               


Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC-CCccEEeCCCCcCCCcCc--ccccCCCCCCEEEC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL-KSLDFLDLSRNHFFGGIP--SSLSRLRLLSVMDL  830 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~Ldl  830 (1025)
                      +.|+|++|++++..+..+..+++|+.|+|++|++++.+|..+..+ ++|++|||++|.+++..+  ....-+...+.+.+
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~  281 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV  281 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBS
T ss_pred             CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhc
Confidence            889999999999988899999999999999999999999999998 499999999999987532  11222333445566


Q ss_pred             cCCcccccCCC
Q 047190          831 SYNNFSGKIPK  841 (1025)
Q Consensus       831 s~N~l~g~ip~  841 (1025)
                      ..+++.|..|.
T Consensus       282 ~~~~~~C~~p~  292 (306)
T 2z66_A          282 EVERMECATPS  292 (306)
T ss_dssp             CGGGCBEEESG
T ss_pred             cccccccCCch
Confidence            67777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=7.1e-27  Score=263.67  Aligned_cols=276  Identities=19%  Similarity=0.164  Sum_probs=234.0

Q ss_pred             CCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEc
Q 047190          535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL  614 (1025)
Q Consensus       535 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  614 (1025)
                      .....+.+++.++.......    ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCeEeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            34457888888876544332    57999999999999877779999999999999999999988899999999999999


Q ss_pred             ccCcccccCCccccCCCCccEEeCCCCcCccccCh-hhhhcCCCCcEEEeecC-cCcccCcccccccCcccEEEcccccc
Q 047190          615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT-WIGESLPNLVVLSLRSN-KFHGNIPFQLCYLSHIQILDLSLNNI  692 (1025)
Q Consensus       615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l  692 (1025)
                      ++|++++..+..|.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            999999877777999999999999999998 6776 44447999999999999 57777788999999999999999999


Q ss_pred             ccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHh
Q 047190          693 SGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIM  772 (1025)
Q Consensus       693 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~  772 (1025)
                      ++..|..++.+++|                                               +.|++++|+++...+..+.
T Consensus       187 ~~~~~~~l~~l~~L-----------------------------------------------~~L~l~~n~l~~~~~~~~~  219 (353)
T 2z80_A          187 QSYEPKSLKSIQNV-----------------------------------------------SHLILHMKQHILLLEIFVD  219 (353)
T ss_dssp             CEECTTTTTTCSEE-----------------------------------------------EEEEEECSCSTTHHHHHHH
T ss_pred             CccCHHHHhccccC-----------------------------------------------CeecCCCCccccchhhhhh
Confidence            99889888877766                                               8899999999765555567


Q ss_pred             hcccCCeEeccCccccccCCCCCC---CCCCccEEeCCCCcCCC----cCcccccCCCCCCEEECcCCcccccCCCC--C
Q 047190          773 DLVGLVALNLSNNNLTGQITPRIG---QLKSLDFLDLSRNHFFG----GIPSSLSRLRLLSVMDLSYNNFSGKIPKG--T  843 (1025)
Q Consensus       773 ~l~~L~~L~Ls~N~l~g~ip~~~~---~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~Ldls~N~l~g~ip~~--~  843 (1025)
                      .+++|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|+.+..+++|+.||+++|+++ .+|..  .
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~  298 (353)
T 2z80_A          220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD  298 (353)
T ss_dssp             HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHh
Confidence            799999999999999988776654   35778999999999987    47889999999999999999999 67764  3


Q ss_pred             CCCCcCCCCcCCCCCCCCCC
Q 047190          844 QLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       844 ~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      .+..+....+.+||+.|.++
T Consensus       299 ~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          299 RLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCTTCCEEECCSSCBCCCHH
T ss_pred             cCCCCCEEEeeCCCccCcCC
Confidence            55566666789999999774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=4.7e-28  Score=293.89  Aligned_cols=381  Identities=12%  Similarity=0.035  Sum_probs=204.7

Q ss_pred             CCCCCcEEEeecccccCcccccccc-cC-CcceeeccCccc-ccccchhhhcCCCCCcEEECCCCccccc----cccCCC
Q 047190          364 GFPSLQILSLENNRLTGTISKSIGQ-LS-KLELLLLSGNSL-RGVISEALFSNLSSLDTLQLSDNSLTLK----FSHDWT  436 (1025)
Q Consensus       364 ~l~~L~~L~L~~n~l~~~~p~~l~~-l~-~L~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~  436 (1025)
                      .+++|++|++++|.+++..+..+.. ++ +|++|++++|.- ..........++++|++|++++|.+++.    ......
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            3455555555555555444444443 22 256666655541 1110111123455666666666554332    111112


Q ss_pred             CCcccceeeccCCCCC----CCCchhhhcCCcccEEEccCCCCCCchhhhhhhccccceEEEccCccCCCCCCCcccccc
Q 047190          437 PPFQLFNIFLGSCKIG----PRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFD  512 (1025)
Q Consensus       437 ~~~~L~~L~L~~~~l~----~~~p~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~l  512 (1025)
                      ..++|+.|++++|.+.    ..++..+..+++|+.|++++|.+.+ .+..+... ++|++|+++........+..     
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~-----  262 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA-ANLEEFCGGSLNEDIGMPEK-----  262 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC-TTCCEEEECBCCCCTTCTTS-----
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh-hHHHhhcccccccccchHHH-----
Confidence            2344555555555544    2344556677888888888887776 34555554 37888777653211000000     


Q ss_pred             CCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCC
Q 047190          513 SYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLAN  592 (1025)
Q Consensus       513 ~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  592 (1025)
                                       +                      .....+++|+.|+++++.. +.+|..+..+++|++|++++
T Consensus       263 -----------------~----------------------~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~  302 (592)
T 3ogk_B          263 -----------------Y----------------------MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY  302 (592)
T ss_dssp             -----------------S----------------------SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred             -----------------H----------------------HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence                             0                      0000124456666655422 24555556666677777766


Q ss_pred             CcccccCC-cccccccCCCEEEcccCcccccCCccccCCCCccEEeCC-----------CCcCccccChhhhhcCCCCcE
Q 047190          593 NSFFGEIP-DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG-----------KNGLSGEIPTWIGESLPNLVV  660 (1025)
Q Consensus       593 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls-----------~N~l~g~ip~~~~~~l~~L~~  660 (1025)
                      |.+++... ..+..+++|++|+++++...+.++..+..+++|++|+++           .|.+++.....+...+++|++
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence            66544322 224556667777776333333344444566677777777           355554333333335677777


Q ss_pred             EEeecCcCcccCcccccc-cCcccEEEcc----ccccccc-----cCccccCccccccccccCccccccccccccccccc
Q 047190          661 LSLRSNKFHGNIPFQLCY-LSHIQILDLS----LNNISGI-----IPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGML  730 (1025)
Q Consensus       661 L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  730 (1025)
                      |+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..                            
T Consensus       383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~----------------------------  434 (592)
T 3ogk_B          383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG----------------------------  434 (592)
T ss_dssp             EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH----------------------------
T ss_pred             EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh----------------------------
Confidence            777777777666555554 6777777775    4555532     1111222                            


Q ss_pred             ceeEeecccCCccceeeccccceeEEEcccC--CCCCcChhhHhh-cccCCeEeccCccccc-cCCCCCCCCCCccEEeC
Q 047190          731 MPLIFFDTWKGGQYEYKSILGLIKIIDLSSN--KLGGKVLEEIMD-LVGLVALNLSNNNLTG-QITPRIGQLKSLDFLDL  806 (1025)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N--~l~~~ip~~~~~-l~~L~~L~Ls~N~l~g-~ip~~~~~l~~L~~LdL  806 (1025)
                                         ++.|+.|+|+++  .+++..+..+.. +++|+.|+|++|++++ .++..+..+++|++|+|
T Consensus       435 -------------------~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  495 (592)
T 3ogk_B          435 -------------------CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM  495 (592)
T ss_dssp             -------------------CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred             -------------------CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence                               233466777632  366655555554 6777777777777765 33444566677777777


Q ss_pred             CCCcCCCc-CcccccCCCCCCEEECcCCccccc
Q 047190          807 SRNHFFGG-IPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       807 s~N~l~g~-ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      ++|.+++. ++..+..+++|++|++++|++++.
T Consensus       496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            77777654 333445577777777777776643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=262.15  Aligned_cols=250  Identities=21%  Similarity=0.200  Sum_probs=218.7

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK  640 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (1025)
                      ...++.+++.++ .+|..+.  ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            567888998888 6776654  6899999999999999999999999999999999999999889999999999999999


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccC-ccccCccccccccccCcccccc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP-KCFHNFTAMTKEKSSNLSIISN  719 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~~~~~~~~~  719 (1025)
                      |+++ .+|...+..+++|++|+|++|++.+..+..+..+++|+.|+|++|+..+.+| ..|.++++|             
T Consensus       122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-------------  187 (440)
T 3zyj_A          122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-------------  187 (440)
T ss_dssp             SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-------------
T ss_pred             CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-------------
Confidence            9999 6666544479999999999999998888899999999999999965544444 456666655             


Q ss_pred             cccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCC
Q 047190          720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK  799 (1025)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  799 (1025)
                                                        +.|+|++|+++.. | .+..+++|+.|+|++|++++..|..|.+++
T Consensus       188 ----------------------------------~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  231 (440)
T 3zyj_A          188 ----------------------------------RYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM  231 (440)
T ss_dssp             ----------------------------------CEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ----------------------------------CeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCc
Confidence                                              8999999999854 4 488999999999999999999999999999


Q ss_pred             CccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC-CCCCCcCCCCcCCCCCCCCCC
Q 047190          800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLP  863 (1025)
Q Consensus       800 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~-~~~~~~~~~~~~gN~~lcg~~  863 (1025)
                      +|+.|+|++|++++..|..|..+++|+.||+++|++++..+.. ..+..+....+.|||+.|+|.
T Consensus       232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            9999999999999999999999999999999999999765543 345555566689999999884

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.5e-26  Score=252.70  Aligned_cols=235  Identities=22%  Similarity=0.221  Sum_probs=185.6

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCc-ccccCCccccCCCCccEEe
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS-LSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~  637 (1025)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +.+..|..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            567888888888887777778888888888888888888778888888888888888887 7766677888888888888


Q ss_pred             CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      +++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|           
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  179 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence            888888855555555 68888888888888887777778888888888888888886666666666555           


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                          +.|+|++|++++..|..+.++++|+.|+|++|++++..+..++.
T Consensus       180 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          180 ------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             ------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             ------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence                                                77888888888888888888888999999999998877777888


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG  842 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~  842 (1025)
                      +++|+.|+|++|.+++..+.. .-...++.++.+.|.+.|..|..
T Consensus       224 l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            889999999999888654421 11123445557788888888863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.1e-27  Score=265.10  Aligned_cols=246  Identities=20%  Similarity=0.176  Sum_probs=161.0

Q ss_pred             CCCceeeccCCcccccccccccccCCcccEEEccCcccc-ccCCCccc-------CCCCCCEEEcCCCcccccCCccc--
Q 047190          534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLS-GRLPDCWF-------QFDSLAILNLANNSFFGEIPDSM--  603 (1025)
Q Consensus       534 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~--  603 (1025)
                      .+|+.|++++|.+  .++....   ..|+.|++++|.++ +.+|..+.       ++++|++|++++|.+++.+|..+  
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc--ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3456666666666  2332111   22666677777663 34554444       56677777777777776666655  


Q ss_pred             ccccCCCEEEcccCcccccCCccccCC-----CCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCccc--Ccccc
Q 047190          604 SFLRSIGSLSLYNNSLSGGLPSFFMNG-----SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN--IPFQL  676 (1025)
Q Consensus       604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~--~p~~l  676 (1025)
                      ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..+. .+++|++|+|++|++.+.  .|..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHH
Confidence            6667777777777777665 5555555     6777777777777644445554 577777777777776654  23333


Q ss_pred             --cccCcccEEEccccccccc--cC-ccccCccccccccccCcccccccccccccccccceeEeecccCCccceeecccc
Q 047190          677 --CYLSHIQILDLSLNNISGI--IP-KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILG  751 (1025)
Q Consensus       677 --~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (1025)
                        ..+++|++|+|++|++++.  ++ ..+..+                                               +
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-----------------------------------------------~  228 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAAR-----------------------------------------------V  228 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-----------------------------------------------C
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcC-----------------------------------------------C
Confidence              6677777777777777621  11 111222                                               2


Q ss_pred             ceeEEEcccCCCCCcCh-hhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEEC
Q 047190          752 LIKIIDLSSNKLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDL  830 (1025)
Q Consensus       752 ~l~~LdLs~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldl  830 (1025)
                      .|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++|++|||++|++++. |. +..+++|++|++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence            33777777887777665 44556788888888888888 6777776  7888888888888876 55 888888888888


Q ss_pred             cCCccccc
Q 047190          831 SYNNFSGK  838 (1025)
Q Consensus       831 s~N~l~g~  838 (1025)
                      ++|++++.
T Consensus       304 ~~N~l~~~  311 (312)
T 1wwl_A          304 KGNPFLDS  311 (312)
T ss_dssp             TTCTTTCC
T ss_pred             cCCCCCCC
Confidence            88888763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.3e-25  Score=260.08  Aligned_cols=247  Identities=23%  Similarity=0.211  Sum_probs=218.6

Q ss_pred             eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccc
Q 047190          518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG  597 (1025)
Q Consensus       518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  597 (1025)
                      +++++..++......+++++.|++++|++++..+... ..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++
T Consensus        59 v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           59 VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred             EEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence            5555555554444456889999999999988655433 357899999999999999999999999999999999999998


Q ss_pred             cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc
Q 047190          598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC  677 (1025)
Q Consensus       598 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~  677 (1025)
                      ..+..|..+++|++|++++|++++..+..|.++++|+.|++++|...+.+|...+..+++|++|+|++|++++. | .+.
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~  215 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLT  215 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCT
T ss_pred             cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccc
Confidence            88888999999999999999999888889999999999999996555588876666899999999999999864 4 588


Q ss_pred             ccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEE
Q 047190          678 YLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID  757 (1025)
Q Consensus       678 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ld  757 (1025)
                      .+++|+.|+|++|++++..|..|.++++|                                               +.|+
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------------------------------------------~~L~  248 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRPGSFHGLSSL-----------------------------------------------KKLW  248 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECGGGGTTCTTC-----------------------------------------------CEEE
T ss_pred             ccccccEEECcCCcCcccCcccccCccCC-----------------------------------------------CEEE
Confidence            99999999999999999999888887776                                               8899


Q ss_pred             cccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCc
Q 047190          758 LSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       758 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~  814 (1025)
                      |++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+...
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            999999999999999999999999999999999889999999999999999988643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.9e-24  Score=234.69  Aligned_cols=228  Identities=20%  Similarity=0.158  Sum_probs=175.0

Q ss_pred             EEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCc
Q 047190          563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG  642 (1025)
Q Consensus       563 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  642 (1025)
                      ..+..+..++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3445555555 4555442  467777777777777666677777777888887777777776777777888888888888


Q ss_pred             CccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc-cCccccCccccccccccCcccccccc
Q 047190          643 LSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI-IPKCFHNFTAMTKEKSSNLSIISNYY  721 (1025)
Q Consensus       643 l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~  721 (1025)
                      +++..|..+. .+++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..++.+++|               
T Consensus        88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------  151 (276)
T 2z62_A           88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------  151 (276)
T ss_dssp             CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred             cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence            7754445554 678888888888888777666777888888888888888763 57766666555               


Q ss_pred             cccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCC----eEeccCccccccCCCCCCC
Q 047190          722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLV----ALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~----~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                      +.|+|++|++++..+..+..++.|+    .|++++|.+++..+..+..
T Consensus       152 --------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~  199 (276)
T 2z62_A          152 --------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (276)
T ss_dssp             --------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred             --------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence                                            7788888888887777787777777    8999999999877766655


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG  842 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~  842 (1025)
                       .+|+.|+|++|++++..+..+..+++|+.|++++|++.|.+|..
T Consensus       200 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             -CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             -CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence             48999999999999888888899999999999999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.1e-26  Score=254.74  Aligned_cols=244  Identities=25%  Similarity=0.327  Sum_probs=204.5

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcc-cccCCcccc-------cccCCCEEEcccCcccccCCccc--
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSF-FGEIPDSMS-------FLRSIGSLSLYNNSLSGGLPSFF--  627 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--  627 (1025)
                      .++|+.|++++|.+  .+|..+...  |+.|++++|.+ ...+|..+.       .+++|++|++++|++++.+|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            46799999999999  678766655  99999999999 456676665       68999999999999999999876  


Q ss_pred             cCCCCccEEeCCCCcCccccChhhhhcC-----CCCcEEEeecCcCcccCcccccccCcccEEEcccccccccc--Cccc
Q 047190          628 MNGSQLTLMDLGKNGLSGEIPTWIGESL-----PNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGII--PKCF  700 (1025)
Q Consensus       628 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~  700 (1025)
                      ..+++|++|++++|++++. |..+. .+     ++|++|+|++|++.+..|..+..+++|++|+|++|++.+.+  |..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8999999999999999965 87776 45     99999999999999998899999999999999999988763  3332


Q ss_pred             --cCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCC--cCh-hhHhhcc
Q 047190          701 --HNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGG--KVL-EEIMDLV  775 (1025)
Q Consensus       701 --~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~--~ip-~~~~~l~  775 (1025)
                        +.+++|                                               +.|+|++|++++  .++ ..+.+++
T Consensus       196 ~~~~l~~L-----------------------------------------------~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          196 CPLKFPTL-----------------------------------------------QVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             CTTSCTTC-----------------------------------------------CEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             HhccCCCC-----------------------------------------------CEEECCCCcCcchHHHHHHHHhcCC
Confidence              444444                                               899999999994  333 4456889


Q ss_pred             cCCeEeccCccccccCC-CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcC
Q 047190          776 GLVALNLSNNNLTGQIT-PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYA  854 (1025)
Q Consensus       776 ~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~  854 (1025)
                      +|++|+|++|++++.+| ..+..+++|++|||++|+++ .+|..+.  ++|++||+++|++++. |....+..+....+.
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~  304 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLK  304 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECT
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEecc
Confidence            99999999999999886 56777899999999999999 7888877  8999999999999987 665555555555577


Q ss_pred             CCCC
Q 047190          855 GNPE  858 (1025)
Q Consensus       855 gN~~  858 (1025)
                      +|+.
T Consensus       305 ~N~l  308 (312)
T 1wwl_A          305 GNPF  308 (312)
T ss_dssp             TCTT
T ss_pred             CCCC
Confidence            7754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.5e-26  Score=266.77  Aligned_cols=220  Identities=23%  Similarity=0.231  Sum_probs=175.6

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            568888888888888777888888888888888888887665  7888888888888888876433     378888999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCcccc-CccccccccccCcccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH-NFTAMTKEKSSNLSII  717 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~~~~~~~~~  717 (1025)
                      ++|.+++..+.    .+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++.+|..+. .++.|           
T Consensus       107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-----------  171 (487)
T 3oja_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-----------  171 (487)
T ss_dssp             CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred             cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence            99888854432    367888899999998888888888888899999999988887777664 44444           


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                          +.|+|++|.+++..+  +..++.|+.|+|++|.|++.+|. ++.
T Consensus       172 ------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~  212 (487)
T 3oja_A          172 ------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS  212 (487)
T ss_dssp             ------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred             ------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC
Confidence                                                788888888887633  33588888888888888875554 888


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccc-ccCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFS-GKIP  840 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~-g~ip  840 (1025)
                      +++|+.|||++|.+++ +|..+..++.|+.|++++|++. +.+|
T Consensus       213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            8888888888888886 6777888888888888888887 4443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.5e-24  Score=255.28  Aligned_cols=224  Identities=25%  Similarity=0.272  Sum_probs=163.6

Q ss_pred             CCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCE
Q 047190          532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGS  611 (1025)
Q Consensus       532 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  611 (1025)
                      .+++|++|++++|++++...     .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~  145 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQE  145 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred             cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCE
Confidence            45667777777777664332     34678888888888775 343   46778888888888775 4443   377888


Q ss_pred             EEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190          612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      |++++|++++ +|.   ...+|+.|++++|+++ .+|    ..+++|+.|++++|++++ +|..   +++|+.|++++|.
T Consensus       146 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~  212 (622)
T 3g06_A          146 LSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR  212 (622)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred             EECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCc
Confidence            8888888875 333   3467888888888887 566    246788888888888875 4432   4678888888888


Q ss_pred             cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190          692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI  771 (1025)
Q Consensus       692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~  771 (1025)
                      ++ .+|..+   +                                               .|+.|+|++|++++ +|   
T Consensus       213 l~-~l~~~~---~-----------------------------------------------~L~~L~Ls~N~L~~-lp---  237 (622)
T 3g06_A          213 LT-SLPALP---S-----------------------------------------------GLKELIVSGNRLTS-LP---  237 (622)
T ss_dssp             CS-SCCCCC---T-----------------------------------------------TCCEEECCSSCCSC-CC---
T ss_pred             cc-ccCCCC---C-----------------------------------------------CCCEEEccCCccCc-CC---
Confidence            77 333221   2                                               23788899998887 44   


Q ss_pred             hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      ..+++|+.|+|++|+|++ +|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus       238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          238 VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            556789999999999984 555   5678899999999998 6788899999999999999999988775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-26  Score=253.58  Aligned_cols=221  Identities=25%  Similarity=0.240  Sum_probs=156.2

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|++++|++++..+..   +++|++|++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l  127 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL  127 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred             CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence            456666666666654443  666666677777766665432     2366777777777776554433   456777777


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc-ccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC-YLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      ++|++++..|..+. .+++|++|+|++|++++..+..+. .+++|++|+|++|.+++..+.  ..+              
T Consensus       128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l--------------  190 (317)
T 3o53_A          128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVF--------------  190 (317)
T ss_dssp             CSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCC--------------
T ss_pred             CCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--ccc--------------
Confidence            77777744444444 577777777777777776666653 677788888888877754111  112              


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                       +.|+.|||++|++++..+ .+..+++|+.|+|++|++++ +|..++.
T Consensus       191 ---------------------------------~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~  235 (317)
T 3o53_A          191 ---------------------------------AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRF  235 (317)
T ss_dssp             ---------------------------------TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred             ---------------------------------ccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhc
Confidence                                             233788888888886544 48889999999999999994 6888999


Q ss_pred             CCCccEEeCCCCcCC-CcCcccccCCCCCCEEECc-CCcccccCCC
Q 047190          798 LKSLDFLDLSRNHFF-GGIPSSLSRLRLLSVMDLS-YNNFSGKIPK  841 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~Ldls-~N~l~g~ip~  841 (1025)
                      +++|+.|+|++|.++ +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            999999999999999 8888999999999999998 5567776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.7e-24  Score=256.02  Aligned_cols=210  Identities=25%  Similarity=0.315  Sum_probs=162.0

Q ss_pred             CCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCE
Q 047190          532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGS  611 (1025)
Q Consensus       532 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  611 (1025)
                      .+++|++|++++|++++...     .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+.+|+.
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~  165 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCK  165 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCE
Confidence            34566667777666665433     23668888888888885 5543   4788899999998885 343   2467888


Q ss_pred             EEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190          612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      |++++|.+++ +|   ..+++|+.|++++|+++ .+|.    .+++|+.|++++|.++. +|..   +++|+.|+|++|+
T Consensus       166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~  232 (622)
T 3g06_A          166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNR  232 (622)
T ss_dssp             EECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred             EECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCc
Confidence            9999999886 44   45688999999999998 5664    35789999999999884 4432   4789999999999


Q ss_pred             cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190          692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI  771 (1025)
Q Consensus       692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~  771 (1025)
                      +++ +|.   .+++                                               |+.|+|++|+|++ +|.  
T Consensus       233 L~~-lp~---~l~~-----------------------------------------------L~~L~Ls~N~L~~-lp~--  258 (622)
T 3g06_A          233 LTS-LPV---LPSE-----------------------------------------------LKELMVSGNRLTS-LPM--  258 (622)
T ss_dssp             CSC-CCC---CCTT-----------------------------------------------CCEEECCSSCCSC-CCC--
T ss_pred             cCc-CCC---CCCc-----------------------------------------------CcEEECCCCCCCc-CCc--
Confidence            885 442   2223                                               3789999999985 554  


Q ss_pred             hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCC
Q 047190          772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR  823 (1025)
Q Consensus       772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  823 (1025)
                       .+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|.+++.+|..+..++
T Consensus       259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence             6789999999999999 7788999999999999999999999999887665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.9e-25  Score=259.46  Aligned_cols=236  Identities=26%  Similarity=0.223  Sum_probs=203.3

Q ss_pred             CCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEE
Q 047190          533 PPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSL  612 (1025)
Q Consensus       533 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  612 (1025)
                      +++|+.|++++|.+++..+... ..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..+     .++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            5689999999999988665333 357899999999999998776  8999999999999999986443     3899999


Q ss_pred             EcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc-ccCcccEEEccccc
Q 047190          613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC-YLSHIQILDLSLNN  691 (1025)
Q Consensus       613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~  691 (1025)
                      ++++|.+++..+.   .+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            9999999987665   458899999999999977777776 699999999999999999998886 79999999999999


Q ss_pred             cccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhH
Q 047190          692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEI  771 (1025)
Q Consensus       692 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~  771 (1025)
                      +++..+.  ..++                                               .|+.|||++|++++.+|. +
T Consensus       181 l~~~~~~--~~l~-----------------------------------------------~L~~L~Ls~N~l~~~~~~-~  210 (487)
T 3oja_A          181 IYDVKGQ--VVFA-----------------------------------------------KLKTLDLSSNKLAFMGPE-F  210 (487)
T ss_dssp             CCEEECC--CCCT-----------------------------------------------TCCEEECCSSCCCEECGG-G
T ss_pred             ccccccc--ccCC-----------------------------------------------CCCEEECCCCCCCCCCHh-H
Confidence            9976332  1233                                               348999999999986665 9


Q ss_pred             hhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCC-CcCcccccCCCCCCEEECc
Q 047190          772 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFF-GGIPSSLSRLRLLSVMDLS  831 (1025)
Q Consensus       772 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~Ldls  831 (1025)
                      ..++.|+.|+|++|.|++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus       211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999999999999999997 7888999999999999999999 7888888888888887776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2.4e-25  Score=246.91  Aligned_cols=241  Identities=23%  Similarity=0.198  Sum_probs=161.7

Q ss_pred             ccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCC
Q 047190          133 IGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR  212 (1025)
Q Consensus       133 l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~  212 (1025)
                      +..+++|++|+|++|.+++..|..++++++|++|+|++|.+...   ..+..+++|++|++++|.+++++       ..+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~l~~L~~L~Ls~n~l~~l~-------~~~   99 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET---LDLESLSTLRTLDLNNNYVQELL-------VGP   99 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE---EEETTCTTCCEEECCSSEEEEEE-------ECT
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc---hhhhhcCCCCEEECcCCcccccc-------CCC
Confidence            33444555555555555555555555555555555555554211   11555555555555555555432       235


Q ss_pred             CCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhh-hCCCCC
Q 047190          213 SLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF-GHMASL  291 (1025)
Q Consensus       213 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L  291 (1025)
                      +|++|++++|.+.+..+.     .+ ++|++|++++|.+++..+..+..+..  |++|++++|.+++..+..+ ..+++|
T Consensus       100 ~L~~L~l~~n~l~~~~~~-----~~-~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A          100 SIETLHAANNNISRVSCS-----RG-QGKKNIYLANNKITMLRDLDEGCRSR--VQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             TCCEEECCSSCCSEEEEC-----CC-SSCEEEECCSSCCCSGGGBCTGGGSS--EEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CcCEEECCCCccCCcCcc-----cc-CCCCEEECCCCCCCCccchhhhccCC--CCEEECCCCCCCcccHHHHhhccCcC
Confidence            666666666666554332     12 67888888888887766667777777  8888888888887777666 468888


Q ss_pred             cEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccCCCCCCCCCcEE
Q 047190          292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQIL  371 (1025)
Q Consensus       292 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~l~~l~~L~~L  371 (1025)
                      ++|++++|.++++|.. ..+++|++|++++|.+++..+. +..++       +|++|+|++|.+++..+.+..+++|++|
T Consensus       172 ~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~-------~L~~L~L~~N~l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          172 EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA-------GVTWISLRNNKLVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             CEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT-------TCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred             CEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC-------cccEEECcCCcccchhhHhhcCCCCCEE
Confidence            8888888888887543 3478888888888888765443 66666       8888888888887544447777888888


Q ss_pred             Eeeccccc-CcccccccccCCcceeeccCc
Q 047190          372 SLENNRLT-GTISKSIGQLSKLELLLLSGN  400 (1025)
Q Consensus       372 ~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N  400 (1025)
                      ++++|++. +.++..+..+++|+.|+++++
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCc
Confidence            88888887 667777777788888877744

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=6.7e-26  Score=275.07  Aligned_cols=89  Identities=11%  Similarity=0.022  Sum_probs=41.3

Q ss_pred             cCCCCCCEEEcCCCcccccCCccccc-ccCCCEEEcccCcccccCCccc-cCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190          580 FQFDSLAILNLANNSFFGEIPDSMSF-LRSIGSLSLYNNSLSGGLPSFF-MNGSQLTLMDLGKNGLSGEIPTWIGESLPN  657 (1025)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  657 (1025)
                      ..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|+|++|.+++..+..+...+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3445555555544 333333233332 4455555555555543333222 345555555555555543333323323455


Q ss_pred             CcEEEeecCcCc
Q 047190          658 LVVLSLRSNKFH  669 (1025)
Q Consensus       658 L~~L~L~~N~l~  669 (1025)
                      |++|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            555555555553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.5e-23  Score=223.78  Aligned_cols=205  Identities=22%  Similarity=0.231  Sum_probs=132.4

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK  640 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (1025)
                      .+.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|++++..+..|.+           
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~-----------   83 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-----------   83 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS-----------
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC-----------
Confidence            455666666665 3443332  34555555555555444444444445555555444444433333444           


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY  720 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  720 (1025)
                                    +++|++|+|++|++++..+..+..+++|++|++++|++++..|..|+.+++|              
T Consensus        84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  135 (270)
T 2o6q_A           84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------  135 (270)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             --------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------
Confidence                          5555555555555554444445555555666666666555555545444444              


Q ss_pred             ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190          721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS  800 (1025)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  800 (1025)
                                                       +.|+|++|++++..+..+..+++|+.|+|++|++++..+..|+.+++
T Consensus       136 ---------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          136 ---------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             ---------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence                                             56666666666655566777888888999999998888888899999


Q ss_pred             ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190          801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip  840 (1025)
                      |++|||++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            9999999999998877788889999999999999988765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.3e-25  Score=272.54  Aligned_cols=314  Identities=13%  Similarity=0.106  Sum_probs=149.1

Q ss_pred             CCCcccceEecCCCCcEEEEECCCCCCCCCCccccccc-ccCcCCCCCcEEEccCCCCCC-CC-C------------ccc
Q 047190           68 NCCKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTIN-PSLLKLQHLTYLDLSWNNFSG-SP-I------------PEF  132 (1025)
Q Consensus        68 ~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~l~g~l~-~~l~~l~~L~~L~Ls~n~l~~-~~-~------------p~~  132 (1025)
                      -|++|.++..    .....+++..+        .+..+ ..+.++++|++|+++++.... .. .            +..
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~--------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l  100 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNC--------YAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM  100 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESST--------TSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred             HHHHHHHhhh----hhceEEeeccc--------cccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHH
Confidence            3667888822    12345666552        12222 345678999999999875211 00 1            122


Q ss_pred             ccCcccccccccccccCCCCcchhcc-CCCCCCEEecccCC-CCCCCCchhcccCCCCCeeeccCCcCCCCc-c-hHHhh
Q 047190          133 IGSLGKLSELALSSAQFAGPIPHQLG-NLSKLQVLDLRFNN-LFSSGNLDWLSYLSSLRYLDLADCKLSKFS-N-WVQVL  208 (1025)
Q Consensus       133 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~L~~L~~L~Ls~n~-i~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~-~~~~l  208 (1025)
                      ...+++|++|+|++|.+++..+..+. .+++|++|+|++|. +........+.++++|++|++++|.+++.. . +....
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            34566777777777777666555554 56777777777763 211112223335666666666666654421 1 11122


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCC
Q 047190          209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHM  288 (1025)
Q Consensus       209 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l  288 (1025)
                      ..+++|++|++++|. .......                       +......+++  |++|++++|...+.++..+..+
T Consensus       181 ~~~~~L~~L~l~~~~-~~~~~~~-----------------------l~~l~~~~~~--L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          181 DTYTSLVSLNISCLA-SEVSFSA-----------------------LERLVTRCPN--LKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             TTCCCCCEEECTTCC-SCCCHHH-----------------------HHHHHHHCTT--CCEEECCTTSCHHHHHHHHHHC
T ss_pred             hcCCcCcEEEecccC-CcCCHHH-----------------------HHHHHHhCCC--CcEEecCCCCcHHHHHHHHhcC
Confidence            244455555555543 1111000                       0011122234  5555555552212245555555


Q ss_pred             CCCcEEEccCCC-------CCCcchhhcCCCCccEE-EeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccccccC
Q 047190          289 ASLRHLDLLSNQ-------LREVPKFLGNMSSLKRL-VFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIP  360 (1025)
Q Consensus       289 ~~L~~L~Ls~n~-------l~~lp~~l~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p  360 (1025)
                      ++|++|+++.+.       +.+++..+.++++|+.| .+.... .+.++..+..++       +|++|+|++|.+++...
T Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~-------~L~~L~L~~~~l~~~~l  306 (594)
T 2p1m_B          235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCS-------RLTTLNLSYATVQSYDL  306 (594)
T ss_dssp             TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHT-------TCCEEECTTCCCCHHHH
T ss_pred             CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhC-------CCCEEEccCCCCCHHHH
Confidence            556666544332       22344455556666655 222211 122233333333       66666666665443221


Q ss_pred             C--CCCCCCCcEEEeecccccCc-ccccccccCCcceeeccC---------cccccccchhhhcCCCCCcEEECCCCccc
Q 047190          361 D--LGGFPSLQILSLENNRLTGT-ISKSIGQLSKLELLLLSG---------NSLRGVISEALFSNLSSLDTLQLSDNSLT  428 (1025)
Q Consensus       361 ~--l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~---------N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  428 (1025)
                      .  +..+++|++|++++| +++. ++.....+++|++|++.+         +.+++........++++|++|.+..|.++
T Consensus       307 ~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred             HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence            1  345566666666665 3221 111122356666666622         33332222222233566666655555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.6e-23  Score=225.71  Aligned_cols=213  Identities=23%  Similarity=0.194  Sum_probs=180.4

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45888999999998777778889999999999999998888888899999999999999999888888999999999999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCccc-CcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN-IPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      ++|++++..+..+. .+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..+..+        
T Consensus       108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l--------  178 (276)
T 2z62_A          108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL--------  178 (276)
T ss_dssp             TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC--------
T ss_pred             CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc--------
Confidence            99999854444554 789999999999999874 58899999999999999999998877777766665211        


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                         ...|++++|++++..+..+.. .+|+.|+|++|++++..+..++.
T Consensus       179 -----------------------------------~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          179 -----------------------------------NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             -----------------------------------CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred             -----------------------------------ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence                                               027999999999776665554 48999999999999888888899


Q ss_pred             CCCccEEeCCCCcCCCcCc
Q 047190          798 LKSLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip  816 (1025)
                      +++|+.|+|++|.+++..|
T Consensus       223 l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTT
T ss_pred             cccccEEEccCCcccccCC
Confidence            9999999999999998654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.1e-22  Score=221.74  Aligned_cols=206  Identities=23%  Similarity=0.278  Sum_probs=159.7

Q ss_pred             ccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCC
Q 047190          579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNL  658 (1025)
Q Consensus       579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L  658 (1025)
                      +.++++++.+++++|.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|+++ .+|.. . .+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~-~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-C-CCCcC
Confidence            455666777777777766 3444443  56777777777777776777777777777777777777 34433 2 57788


Q ss_pred             cEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecc
Q 047190          659 VVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDT  738 (1025)
Q Consensus       659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (1025)
                      ++|+|++|+++ .+|..+..+++|++|+|++|++++..|..|..+++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            88888888877 566677778888888888888887766777766665                                


Q ss_pred             cCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc
Q 047190          739 WKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS  818 (1025)
Q Consensus       739 ~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~  818 (1025)
                                     +.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..
T Consensus       127 ---------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~  190 (290)
T 1p9a_G          127 ---------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (290)
T ss_dssp             ---------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ---------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence                           77888888888877777888899999999999999877777889999999999999998 67888


Q ss_pred             ccCCCCCCEEECcCCcccccC
Q 047190          819 LSRLRLLSVMDLSYNNFSGKI  839 (1025)
Q Consensus       819 l~~l~~L~~Ldls~N~l~g~i  839 (1025)
                      +..+..|+.+++++|++.+..
T Consensus       191 ~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          191 FFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTTCCCSEEECCSCCBCCSG
T ss_pred             hcccccCCeEEeCCCCccCcC
Confidence            888889999999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.3e-23  Score=227.29  Aligned_cols=222  Identities=21%  Similarity=0.200  Sum_probs=173.8

Q ss_pred             cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG  639 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (1025)
                      .+..+++.++.+....  ....+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            3455666666665442  345577788888888877632  3467778888888888888763  367788888888888


Q ss_pred             CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccc
Q 047190          640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN  719 (1025)
Q Consensus       640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  719 (1025)
                      +|++++..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++++..|..++.+++|             
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            8888844443344 68888888888888887777778888888888888888887777666666665             


Q ss_pred             cccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCC
Q 047190          720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK  799 (1025)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  799 (1025)
                                                        +.|++++|++++..+..++.+++|+.|+|++|++++.+|..++.++
T Consensus       160 ----------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          160 ----------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence                                              7888888888888888888999999999999999998888899999


Q ss_pred             CccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCC
Q 047190          800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG  842 (1025)
Q Consensus       800 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~  842 (1025)
                      +|+.|+|++|.+++..|       .|+.|++++|+++|.||..
T Consensus       206 ~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             CCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            99999999999987654       5888999999999999974

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.6e-22  Score=216.88  Aligned_cols=205  Identities=23%  Similarity=0.225  Sum_probs=158.3

Q ss_pred             CCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEE
Q 047190          534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLS  613 (1025)
Q Consensus       534 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  613 (1025)
                      .+.+.++++++.++.......    +.++.|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            467899999999986543332    5799999999999988888999999999999999999977777788999999999


Q ss_pred             cccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190          614 LYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       614 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                      +++|++++..+..|..+++|++|++++|++++ +|...+..+++|++|+|++|++++..+..+..+++|+.|+|++|.++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            99999998777788888888888888888884 44333335777777777777776555555666666666666666555


Q ss_pred             cccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhh
Q 047190          694 GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD  773 (1025)
Q Consensus       694 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~  773 (1025)
                      +                                                                       ..+..|..
T Consensus       171 ~-----------------------------------------------------------------------~~~~~~~~  179 (270)
T 2o6q_A          171 R-----------------------------------------------------------------------VPEGAFDK  179 (270)
T ss_dssp             C-----------------------------------------------------------------------CCTTTTTT
T ss_pred             E-----------------------------------------------------------------------eChhHhcc
Confidence            3                                                                       33344555


Q ss_pred             cccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCc
Q 047190          774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       774 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~  814 (1025)
                      +++|++|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            66777778888888776677788888888888888888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.8e-23  Score=224.71  Aligned_cols=226  Identities=19%  Similarity=0.173  Sum_probs=190.7

Q ss_pred             CceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcc
Q 047190          536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLY  615 (1025)
Q Consensus       536 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  615 (1025)
                      +..+++..+.+......   ..+++|+.|++++|.++. + ..+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        21 l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHhcCccccccccc---ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            33445555555443322   235789999999999884 3 3588899999999999999863  478899999999999


Q ss_pred             cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc
Q 047190          616 NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI  695 (1025)
Q Consensus       616 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  695 (1025)
                      +|.+++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            9999988888899999999999999999954444444 799999999999999988888889999999999999999988


Q ss_pred             cCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcc
Q 047190          696 IPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLV  775 (1025)
Q Consensus       696 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~  775 (1025)
                      .|..++.+++|                                               +.|++++|++++..|..+..++
T Consensus       173 ~~~~~~~l~~L-----------------------------------------------~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          173 PEGVFDKLTQL-----------------------------------------------KDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             CTTTTTTCTTC-----------------------------------------------CEEECCSSCCSCCCTTTTTTCT
T ss_pred             CHHHhcCCccC-----------------------------------------------CEEECCCCcCCccCHHHHhCCc
Confidence            77777777666                                               8899999999999998899999


Q ss_pred             cCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCC
Q 047190          776 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR  823 (1025)
Q Consensus       776 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  823 (1025)
                      +|+.|+|++|.+.+..|       +|+.|+++.|+++|.+|..++.+.
T Consensus       206 ~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             TCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccC
Confidence            99999999999986654       789999999999999999987654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.1e-21  Score=213.95  Aligned_cols=203  Identities=21%  Similarity=0.173  Sum_probs=177.4

Q ss_pred             cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      .+++++.+++++|.++ .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            3467899999999998 5565553  6899999999999988888899999999999999999875443  788999999


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSI  716 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~  716 (1025)
                      ++++|+++ .+|..+. .+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|          
T Consensus        83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  150 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----------  150 (290)
T ss_dssp             ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred             ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence            99999998 8888776 69999999999999998888899999999999999999998777777766665          


Q ss_pred             ccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCC
Q 047190          717 ISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIG  796 (1025)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  796 (1025)
                                                           +.|+|++|++++..+..+..+++|+.|+|++|+|+ .+|..+.
T Consensus       151 -------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence                                                 88999999999887788899999999999999999 6788888


Q ss_pred             CCCCccEEeCCCCcCCCc
Q 047190          797 QLKSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       797 ~l~~L~~LdLs~N~l~g~  814 (1025)
                      .+.+|+.|+|++|.+...
T Consensus       193 ~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTCCCSEEECCSCCBCCS
T ss_pred             ccccCCeEEeCCCCccCc
Confidence            889999999999998753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=224.61  Aligned_cols=230  Identities=21%  Similarity=0.157  Sum_probs=138.3

Q ss_pred             CCceeeccCCccccccc--ccccccCCcccEEEccCccccccCCCcc--cCCCCCCEEEcCCCcccccCC----cccccc
Q 047190          535 NVSSLNLSKNKFSGSIS--FLCSISSHLLTYLDLSNNLLSGRLPDCW--FQFDSLAILNLANNSFFGEIP----DSMSFL  606 (1025)
Q Consensus       535 ~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l  606 (1025)
                      .++.+.+.++.+....-  .......++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35556666655543210  0111123557777777777777777776  677777777777777776544    233456


Q ss_pred             cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccc--cC-hhhhhcCCCCcEEEeecCcCcccC--cc-cccccC
Q 047190          607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGE--IP-TWIGESLPNLVVLSLRSNKFHGNI--PF-QLCYLS  680 (1025)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~--ip-~~~~~~l~~L~~L~L~~N~l~~~~--p~-~l~~l~  680 (1025)
                      ++|++|++++|++++..+..|..+++|++|+|++|++.+.  ++ ......+++|++|+|++|+++...  +. .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            6777777777777766667777777777777777776542  21 111124566666666666664211  11 134555


Q ss_pred             cccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEccc
Q 047190          681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS  760 (1025)
Q Consensus       681 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~  760 (1025)
                      +|++|+|++|++++..|..+..+..                                                       
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~-------------------------------------------------------  249 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMW-------------------------------------------------------  249 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCC-------------------------------------------------------
T ss_pred             CCCEEECCCCCCCccchhhHHhccC-------------------------------------------------------
Confidence            6666666666665555544433221                                                       


Q ss_pred             CCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccc
Q 047190          761 NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG  837 (1025)
Q Consensus       761 N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g  837 (1025)
                                   +++|++|+|++|+|+ .+|..+.  ++|++|||++|++++. |. +..++.|+.|++++|+++.
T Consensus       250 -------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 -------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence                         146677777777777 5566554  6777788888877764 32 5666777788888887764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.7e-23  Score=239.03  Aligned_cols=236  Identities=18%  Similarity=0.233  Sum_probs=189.1

Q ss_pred             CCcccEEEccCccccccCC----CcccCCCCCCEEEcCCC---cccccCCccc-------ccccCCCEEEcccCcccc--
Q 047190          558 SHLLTYLDLSNNLLSGRLP----DCWFQFDSLAILNLANN---SFFGEIPDSM-------SFLRSIGSLSLYNNSLSG--  621 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~--  621 (1025)
                      +++|+.|+|++|.+++..+    ..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|.+++  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4678999999998886633    44778899999999986   4555666555       678899999999999987  


Q ss_pred             --cCCccccCCCCccEEeCCCCcCccccChhhhh---cC---------CCCcEEEeecCcCc-ccCc---ccccccCccc
Q 047190          622 --GLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGE---SL---------PNLVVLSLRSNKFH-GNIP---FQLCYLSHIQ  683 (1025)
Q Consensus       622 --~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~  683 (1025)
                        .+|..+..+++|++|+|++|.+++..+..+..   .+         ++|++|+|++|+++ +.+|   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              47778889999999999999997554444432   23         89999999999997 4445   4677889999


Q ss_pred             EEEcccccccc-----ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEc
Q 047190          684 ILDLSLNNISG-----IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDL  758 (1025)
Q Consensus       684 ~L~Ls~N~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdL  758 (1025)
                      .|+|++|+++.     ..|..+..+++|                                               +.|+|
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L-----------------------------------------------~~L~L  223 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQEL-----------------------------------------------KVLDL  223 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTC-----------------------------------------------CEEEC
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCc-----------------------------------------------cEEEC
Confidence            99999999872     233344444443                                               88999


Q ss_pred             ccCCCC----CcChhhHhhcccCCeEeccCcccccc----CCCCC--CCCCCccEEeCCCCcCCC----cCcccc-cCCC
Q 047190          759 SSNKLG----GKVLEEIMDLVGLVALNLSNNNLTGQ----ITPRI--GQLKSLDFLDLSRNHFFG----GIPSSL-SRLR  823 (1025)
Q Consensus       759 s~N~l~----~~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~--~~l~~L~~LdLs~N~l~g----~ip~~l-~~l~  823 (1025)
                      ++|.++    +.+|..+..++.|+.|+|++|.+++.    +|..+  +.+++|++|+|++|.+++    .+|..+ .+++
T Consensus       224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~  303 (386)
T 2ca6_A          224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  303 (386)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence            999997    77888999999999999999999877    56666  448999999999999998    588888 6689


Q ss_pred             CCCEEECcCCcccccCC
Q 047190          824 LLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       824 ~L~~Ldls~N~l~g~ip  840 (1025)
                      +|++|++++|++++..|
T Consensus       304 ~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          304 DLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTSBSCTTSH
T ss_pred             CceEEEccCCcCCcchh
Confidence            99999999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3e-23  Score=234.56  Aligned_cols=255  Identities=24%  Similarity=0.209  Sum_probs=153.7

Q ss_pred             eccCCcccccccccccccCCcccEEEccCccccccCC----CcccCCC-CCCEEEcCCCcccccCCcccccc-----cCC
Q 047190          540 NLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLP----DCWFQFD-SLAILNLANNSFFGEIPDSMSFL-----RSI  609 (1025)
Q Consensus       540 ~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L  609 (1025)
                      +++.|.+++.++.... ..++|++|++++|.+++..+    ..+.+++ +|++|+|++|.+++..+..+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3444444444433222 12447777777777765555    5566666 67777777777776666666554     677


Q ss_pred             CEEEcccCcccccCCcc----ccCC-CCccEEeCCCCcCccccChhhhhc----CCCCcEEEeecCcCcccCcc----cc
Q 047190          610 GSLSLYNNSLSGGLPSF----FMNG-SQLTLMDLGKNGLSGEIPTWIGES----LPNLVVLSLRSNKFHGNIPF----QL  676 (1025)
Q Consensus       610 ~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~Ls~N~l~g~ip~~~~~~----l~~L~~L~L~~N~l~~~~p~----~l  676 (1025)
                      ++|++++|++++..+..    +..+ ++|++|++++|++++..+..+...    .++|++|+|++|.+++..+.    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777777655543    3333 677777777777764444443321    24777777777777754333    33


Q ss_pred             cccC-cccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccc-ccee
Q 047190          677 CYLS-HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL-GLIK  754 (1025)
Q Consensus       677 ~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  754 (1025)
                      ..++ +|++|+|++|++++..+..+...-.                                           .. ..|+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-------------------------------------------~~~~~L~  199 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLA-------------------------------------------SIPASVT  199 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHH-------------------------------------------TSCTTCC
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHH-------------------------------------------hCCCCCC
Confidence            4444 7777777777777655543332100                                           01 1336


Q ss_pred             EEEcccCCCCCc----ChhhHhhc-ccCCeEeccCccccccCC----CCCCCCCCccEEeCCCCcCCCcCc-------cc
Q 047190          755 IIDLSSNKLGGK----VLEEIMDL-VGLVALNLSNNNLTGQIT----PRIGQLKSLDFLDLSRNHFFGGIP-------SS  818 (1025)
Q Consensus       755 ~LdLs~N~l~~~----ip~~~~~l-~~L~~L~Ls~N~l~g~ip----~~~~~l~~L~~LdLs~N~l~g~ip-------~~  818 (1025)
                      .|||++|++++.    ++..+..+ +.|++|+|++|.+++..+    ..+..+++|+.|+|++|.+++..+       ..
T Consensus       200 ~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~  279 (362)
T 3goz_A          200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA  279 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred             EEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence            777777777653    44455553 477777777777776543    334566777777777777554433       35


Q ss_pred             ccCCCCCCEEECcCCccccc
Q 047190          819 LSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       819 l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      +..++.|+.||+++|++.+.
T Consensus       280 ~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          280 FPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             STTCCEEEEECTTSCBCCGG
T ss_pred             hccCCceEEEecCCCcCCCc
Confidence            56667777777777777655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=8.6e-22  Score=210.36  Aligned_cols=192  Identities=22%  Similarity=0.223  Sum_probs=124.1

Q ss_pred             CccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccc
Q 047190          632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS  711 (1025)
Q Consensus       632 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~  711 (1025)
                      +|+.|+|++|++++..|..+. .+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..|..+++|     
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----  109 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-----  109 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred             CCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-----
Confidence            455555555555533333333 45555555555555555555555666666666666666665555555554444     


Q ss_pred             cCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC
Q 047190          712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI  791 (1025)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i  791 (1025)
                                                                +.|+|++|++++..+..+..+++|++|+|++|+|++..
T Consensus       110 ------------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A          110 ------------------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             ------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ------------------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence                                                      66677777777666666777888888999999998888


Q ss_pred             CCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCc------CCCCcCCCCCCCCCCCC
Q 047190          792 TPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRF------GASTYAGNPELCGLPLP  865 (1025)
Q Consensus       792 p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~------~~~~~~gN~~lcg~~~~  865 (1025)
                      +..|+.+++|++|||++|++++..|..+..+++|+.|++++|+++|..+....+..+      ......|+ .+|+.+..
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~  226 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDG  226 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGG
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCc
Confidence            878999999999999999999888888899999999999999998874432111111      01123344 36777777


Q ss_pred             CCCCCCC
Q 047190          866 NKCLDEE  872 (1025)
Q Consensus       866 ~~C~~~~  872 (1025)
                      ..|..+.
T Consensus       227 ~~C~~~~  233 (251)
T 3m19_A          227 VTCSDGK  233 (251)
T ss_dssp             CBBTTSC
T ss_pred             CccCCCc
Confidence            7886653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.1e-22  Score=224.70  Aligned_cols=201  Identities=25%  Similarity=0.288  Sum_probs=152.7

Q ss_pred             ccCCCEEEcccCcccccCCccc--cCCCCccEEeCCCCcCccccC----hhhhhcCCCCcEEEeecCcCcccCccccccc
Q 047190          606 LRSIGSLSLYNNSLSGGLPSFF--MNGSQLTLMDLGKNGLSGEIP----TWIGESLPNLVVLSLRSNKFHGNIPFQLCYL  679 (1025)
Q Consensus       606 l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~g~ip----~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  679 (1025)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|++++..|    ..+. .+++|++|+|++|++.+..|..+..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccC
Confidence            4557777777777777776666  677777777777777776544    2333 58889999999999988888888889


Q ss_pred             CcccEEEccccccccc--c--CccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeE
Q 047190          680 SHIQILDLSLNNISGI--I--PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKI  755 (1025)
Q Consensus       680 ~~L~~L~Ls~N~l~~~--~--p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  755 (1025)
                      ++|++|+|++|++.+.  +  +.+++.+++|                                               +.
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-----------------------------------------------~~  201 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAI-----------------------------------------------QN  201 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCC-----------------------------------------------CS
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCC-----------------------------------------------CE
Confidence            9999999999988753  2  2223444444                                               77


Q ss_pred             EEcccCCCCCc--Chh-hHhhcccCCeEeccCccccccCCCCCCCC---CCccEEeCCCCcCCCcCcccccCCCCCCEEE
Q 047190          756 IDLSSNKLGGK--VLE-EIMDLVGLVALNLSNNNLTGQITPRIGQL---KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD  829 (1025)
Q Consensus       756 LdLs~N~l~~~--ip~-~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l---~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ld  829 (1025)
                      |+|++|+++..  .+. .+++++.|++|||++|++++.+|..++.+   ++|++|+|++|+++ .+|..+.  ++|+.||
T Consensus       202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~  278 (310)
T 4glp_A          202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD  278 (310)
T ss_dssp             CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred             EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence            88999998732  222 35788999999999999999999888887   69999999999999 6788775  7999999


Q ss_pred             CcCCcccccCCCCCCCCCcCCCCcCCCCC
Q 047190          830 LSYNNFSGKIPKGTQLQRFGASTYAGNPE  858 (1025)
Q Consensus       830 ls~N~l~g~ip~~~~~~~~~~~~~~gN~~  858 (1025)
                      +++|++++. |....+..+....+.||+.
T Consensus       279 Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          279 LSSNRLNRA-PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred             CCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence            999999983 3333455555556788864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.2e-21  Score=207.55  Aligned_cols=196  Identities=20%  Similarity=0.174  Sum_probs=115.3

Q ss_pred             CCCEEEcCCCcccccCCcccccccCCCEEEcccCc-ccccCCccccCCCCccEEeCCC-CcCccccChhhhhcCCCCcEE
Q 047190          584 SLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS-LSGGLPSFFMNGSQLTLMDLGK-NGLSGEIPTWIGESLPNLVVL  661 (1025)
Q Consensus       584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~l~~L~~L  661 (1025)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            56666666666665555555556666666666664 5555555566666666666665 6665 3333322246666666


Q ss_pred             EeecCcCcccCcccccccCccc---EEEcccc-ccccccCccccCccccccccccCcccccccccccccccccceeEeec
Q 047190          662 SLRSNKFHGNIPFQLCYLSHIQ---ILDLSLN-NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFD  737 (1025)
Q Consensus       662 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (1025)
                      ++++|++++ +|. +..+++|+   +|++++| .+++..+..|..+++|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            666666654 443 55555555   6666666 6655544445554444                               


Q ss_pred             ccCCccceeecccccee-EEEcccCCCCCcChhhHhhcccCCeEeccCcc-ccccCCCCCCCC-CCccEEeCCCCcCCCc
Q 047190          738 TWKGGQYEYKSILGLIK-IIDLSSNKLGGKVLEEIMDLVGLVALNLSNNN-LTGQITPRIGQL-KSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       738 ~~~~~~~~~~~~~~~l~-~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l-~~L~~LdLs~N~l~g~  814 (1025)
                                      + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++++.
T Consensus       158 ----------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          158 ----------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             ----------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred             ----------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence                            5 5666666666 333332222667777777773 776666667777 7777777777777754


Q ss_pred             CcccccCCCCCCEEECcCC
Q 047190          815 IPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       815 ip~~l~~l~~L~~Ldls~N  833 (1025)
                      .+.   .++.|+.|+++++
T Consensus       221 ~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          221 PSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCT---TCTTCSEEECTTC
T ss_pred             Chh---HhccCceeeccCc
Confidence            333   4566777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.9e-22  Score=226.51  Aligned_cols=214  Identities=23%  Similarity=0.237  Sum_probs=133.1

Q ss_pred             cccEEEccCccccccCCCcccCC-----CCCCEEEcCCCcccccCCcccccc-----cCCCEEEcccCcccccCCccc--
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQF-----DSLAILNLANNSFFGEIPDSMSFL-----RSIGSLSLYNNSLSGGLPSFF--  627 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~--  627 (1025)
                      +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..+...     ++|++|++++|++++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            45555555555555544444443     566666666666665554433332     566666666666665544433  


Q ss_pred             --cC-CCCccEEeCCCCcCccc----cChhhhhcCC-CCcEEEeecCcCcccCcccccc----c-CcccEEEcccccccc
Q 047190          628 --MN-GSQLTLMDLGKNGLSGE----IPTWIGESLP-NLVVLSLRSNKFHGNIPFQLCY----L-SHIQILDLSLNNISG  694 (1025)
Q Consensus       628 --~~-l~~L~~L~Ls~N~l~g~----ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~  694 (1025)
                        .. .++|++|+|++|++++.    ++..+. .++ +|++|+|++|++++..+..+..    + ++|++|+|++|.+++
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence              23 35777777777777643    233333 233 7777777777777666654443    3 578888888887775


Q ss_pred             cc----CccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhh
Q 047190          695 II----PKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEE  770 (1025)
Q Consensus       695 ~~----p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~  770 (1025)
                      ..    +..+...                                              .+.|+.|||++|++++..+..
T Consensus       211 ~~~~~l~~~l~~~----------------------------------------------~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          211 KSYAELAYIFSSI----------------------------------------------PNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             SCHHHHHHHHHHS----------------------------------------------CTTCCEEECCSSCCCCCCHHH
T ss_pred             hHHHHHHHHHhcC----------------------------------------------CCCceEEECcCCCCCcHHHHH
Confidence            32    2222111                                              123477888888888766544


Q ss_pred             ----HhhcccCCeEeccCcccccc-------CCCCCCCCCCccEEeCCCCcCCCcCccccc
Q 047190          771 ----IMDLVGLVALNLSNNNLTGQ-------ITPRIGQLKSLDFLDLSRNHFFGGIPSSLS  820 (1025)
Q Consensus       771 ----~~~l~~L~~L~Ls~N~l~g~-------ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~  820 (1025)
                          +..++.|++|+|++|.+.+.       ++..+..+++|+.||+++|++.+..|..+.
T Consensus       245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred             HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence                35567888888888885433       345788899999999999999877554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5e-21  Score=210.87  Aligned_cols=192  Identities=21%  Similarity=0.298  Sum_probs=110.7

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      +++|+.|++++|.++. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            3556777777776663 33 46666677777777776664433  66666666666666666643  2466666666666


Q ss_pred             CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccc
Q 047190          638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII  717 (1025)
Q Consensus       638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  717 (1025)
                      +++|+++ .+|. +. .+++|++|++++|++++..+  +..+++|+.|++++|.+++..+  +..+++|           
T Consensus       114 l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-----------  175 (308)
T 1h6u_A          114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL-----------  175 (308)
T ss_dssp             CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred             CCCCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC-----------
Confidence            6666666 3443 33 46666666666666664433  5566666666666666654322  3333332           


Q ss_pred             cccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCC
Q 047190          718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ  797 (1025)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  797 (1025)
                                                          +.|++++|++++..+  +..+++|+.|+|++|++++..|  +..
T Consensus       176 ------------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~  215 (308)
T 1h6u_A          176 ------------------------------------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN  215 (308)
T ss_dssp             ------------------------------------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             ------------------------------------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence                                                555555555554433  5555555555555555554442  555


Q ss_pred             CCCccEEeCCCCcCCC
Q 047190          798 LKSLDFLDLSRNHFFG  813 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g  813 (1025)
                      +++|+.|+|++|.+++
T Consensus       216 l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          216 TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCeeec
Confidence            5555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2e-22  Score=230.11  Aligned_cols=189  Identities=21%  Similarity=0.283  Sum_probs=126.7

Q ss_pred             cCCCCCCEEEcCCCcccc----cCCcccccccCCCEEEcccCcccccCCcc----ccCC---------CCccEEeCCCCc
Q 047190          580 FQFDSLAILNLANNSFFG----EIPDSMSFLRSIGSLSLYNNSLSGGLPSF----FMNG---------SQLTLMDLGKNG  642 (1025)
Q Consensus       580 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l---------~~L~~L~Ls~N~  642 (1025)
                      ..+++|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..    +..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            445555566666655554    24445555566666666666654332222    2222         677777777777


Q ss_pred             Cc-cccC---hhhhhcCCCCcEEEeecCcCcc-----cCcccccccCcccEEEccccccc----cccCccccCccccccc
Q 047190          643 LS-GEIP---TWIGESLPNLVVLSLRSNKFHG-----NIPFQLCYLSHIQILDLSLNNIS----GIIPKCFHNFTAMTKE  709 (1025)
Q Consensus       643 l~-g~ip---~~~~~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~l~~~  709 (1025)
                      ++ +.+|   ..+. .+++|++|+|++|+++.     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|   
T Consensus       171 l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L---  246 (386)
T 2ca6_A          171 LENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL---  246 (386)
T ss_dssp             CTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC---
T ss_pred             CCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc---
Confidence            76 3344   2333 57777888888777762     34446777788888888888875    4556555554444   


Q ss_pred             cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCc----ChhhHhh--cccCCeEecc
Q 047190          710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK----VLEEIMD--LVGLVALNLS  783 (1025)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~----ip~~~~~--l~~L~~L~Ls  783 (1025)
                                                                  +.|+|++|++++.    +|..+..  ++.|+.|+|+
T Consensus       247 --------------------------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          247 --------------------------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             --------------------------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred             --------------------------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence                                                        7788888888765    5666643  8889999999


Q ss_pred             Cccccc----cCCCCC-CCCCCccEEeCCCCcCCCcCc
Q 047190          784 NNNLTG----QITPRI-GQLKSLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       784 ~N~l~g----~ip~~~-~~l~~L~~LdLs~N~l~g~ip  816 (1025)
                      +|.+++    .+|..+ .++++|++|+|++|++++..|
T Consensus       283 ~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999998    577777 668999999999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.3e-22  Score=223.87  Aligned_cols=254  Identities=19%  Similarity=0.225  Sum_probs=198.3

Q ss_pred             CCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc-CCcccccccCCCEE
Q 047190          534 PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE-IPDSMSFLRSIGSL  612 (1025)
Q Consensus       534 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  612 (1025)
                      ..++.++++++.+....  ......+.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus        47 ~~~~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           47 SLWQTLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TTSSEEECTTCBCCHHH--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hhheeeccccccCCHHH--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            34678888888776321  1111126789999999999987666 55789999999999998866 77788889999999


Q ss_pred             EcccCcccccCCccccCCCCccEEeCCCC-cCccc-cChhhhhcCCCCcEEEeecC-cCccc-CcccccccC-cccEEEc
Q 047190          613 SLYNNSLSGGLPSFFMNGSQLTLMDLGKN-GLSGE-IPTWIGESLPNLVVLSLRSN-KFHGN-IPFQLCYLS-HIQILDL  687 (1025)
Q Consensus       613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~g~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L  687 (1025)
                      ++++|.+++..+..+..+++|++|++++| .+++. +|..+. .+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            99999999888888999999999999999 68763 665555 6999999999999 88865 577788899 9999999


Q ss_pred             ccc--ccc-cccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC-C
Q 047190          688 SLN--NIS-GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK-L  763 (1025)
Q Consensus       688 s~N--~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~-l  763 (1025)
                      ++|  .++ +.+|..+..+++|                                               +.|++++|. +
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L-----------------------------------------------~~L~l~~~~~l  235 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNL-----------------------------------------------VHLDLSDSVML  235 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTC-----------------------------------------------SEEECTTCTTC
T ss_pred             CCCcccCCHHHHHHHHhhCCCC-----------------------------------------------CEEeCCCCCcC
Confidence            999  455 3455544444444                                               889999999 8


Q ss_pred             CCcChhhHhhcccCCeEeccCcc-ccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCC-CCCCEEECcCCcccccCCC
Q 047190          764 GGKVLEEIMDLVGLVALNLSNNN-LTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       764 ~~~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~Ldls~N~l~g~ip~  841 (1025)
                      ++..+..+..+++|+.|++++|. ++......++.+++|+.|++++| ++..   .+..+ ..|..|++++|+++|..|.
T Consensus       236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence            88888899999999999999995 33322236788999999999999 4432   33333 3467778999999998885


Q ss_pred             C
Q 047190          842 G  842 (1025)
Q Consensus       842 ~  842 (1025)
                      .
T Consensus       312 ~  312 (336)
T 2ast_B          312 T  312 (336)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.5e-21  Score=201.99  Aligned_cols=197  Identities=16%  Similarity=0.140  Sum_probs=169.4

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCc-ccccCCcccccccCCCEEEccc-CcccccCCccccCCCCccEE
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS-FFGEIPDSMSFLRSIGSLSLYN-NSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            468999999999998878889999999999999997 8877777899999999999998 99998888899999999999


Q ss_pred             eCCCCcCccccChhhhhcCCCCc---EEEeecC-cCcccCcccccccCccc-EEEccccccccccCc-cccCcccccccc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLV---VLSLRSN-KFHGNIPFQLCYLSHIQ-ILDLSLNNISGIIPK-CFHNFTAMTKEK  710 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~-~~~~l~~l~~~~  710 (1025)
                      ++++|+++ .+|. +. .+++|+   +|++++| ++++..+..+..+++|+ .|++++|+++ .+|. .+.. ++     
T Consensus       111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~-----  180 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TK-----  180 (239)
T ss_dssp             EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CE-----
T ss_pred             eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CC-----
Confidence            99999998 4887 44 688888   9999999 99988888899999999 9999999998 4443 3322 33     


Q ss_pred             ccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC-CCCcChhhHhhc-ccCCeEeccCcccc
Q 047190          711 SSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK-LGGKVLEEIMDL-VGLVALNLSNNNLT  788 (1025)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~-l~~~ip~~~~~l-~~L~~L~Ls~N~l~  788 (1025)
                                                                |+.|+|++|+ +++..+..|.++ ++|+.|++++|+++
T Consensus       181 ------------------------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          181 ------------------------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             ------------------------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             ------------------------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence                                                      3899999995 998888889999 99999999999999


Q ss_pred             ccCCCCCCCCCCccEEeCCCCc
Q 047190          789 GQITPRIGQLKSLDFLDLSRNH  810 (1025)
Q Consensus       789 g~ip~~~~~l~~L~~LdLs~N~  810 (1025)
                      +..+.   .+++|+.|+++++.
T Consensus       219 ~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          219 ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCT---TCTTCSEEECTTC-
T ss_pred             cCChh---HhccCceeeccCcc
Confidence            65444   67789999998763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=6.1e-21  Score=210.16  Aligned_cols=212  Identities=20%  Similarity=0.318  Sum_probs=178.8

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK  640 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (1025)
                      +..+.+..+.+++.++  +..+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~   94 (308)
T 1h6u_A           21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (308)
T ss_dssp             HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence            3344556666654432  4568899999999999985 44 68899999999999999997655  99999999999999


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY  720 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  720 (1025)
                      |+++ .+| .+. .+++|++|++++|++++. + .+..+++|+.|++++|.+++..+  ++.+++|              
T Consensus        95 n~l~-~~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L--------------  153 (308)
T 1h6u_A           95 NPLK-NVS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL--------------  153 (308)
T ss_dssp             CCCS-CCG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC--------------
T ss_pred             CcCC-Cch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc--------------
Confidence            9998 455 455 699999999999999874 3 38999999999999999986544  5444444              


Q ss_pred             ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190          721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS  800 (1025)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  800 (1025)
                                                       +.|+|++|++++..+  +..+++|+.|+|++|++++..+  +..+++
T Consensus       154 ---------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~  196 (308)
T 1h6u_A          154 ---------------------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPN  196 (308)
T ss_dssp             ---------------------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             ---------------------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCC
Confidence                                             899999999998655  9999999999999999998765  899999


Q ss_pred             ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190          801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      |++|+|++|++++..|  +..+++|+.|++++|++++.
T Consensus       197 L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             CCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            9999999999998764  89999999999999999873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=2.5e-20  Score=198.96  Aligned_cols=180  Identities=21%  Similarity=0.178  Sum_probs=112.4

Q ss_pred             cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG  639 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (1025)
                      ..++++++++.++ .+|..+.  ++++.|+|++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3566777777776 4554443  466666666666666666566666666666666666665555555555566666666


Q ss_pred             CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccc
Q 047190          640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISN  719 (1025)
Q Consensus       640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  719 (1025)
                      +|+++                         +..+..+..+++|++|+|++|++++..+..|..+++|             
T Consensus        92 ~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------  133 (251)
T 3m19_A           92 NNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL-------------  133 (251)
T ss_dssp             TSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------
Confidence            66555                         3333334444444444444444444333333333333             


Q ss_pred             cccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCC
Q 047190          720 YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK  799 (1025)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~  799 (1025)
                                                        +.|+|++|++++..+..+..+++|++|+|++|++++..|..+..++
T Consensus       134 ----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          134 ----------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG  179 (251)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence                                              4555555555555555666777788888888888887777888888


Q ss_pred             CccEEeCCCCcCCCc
Q 047190          800 SLDFLDLSRNHFFGG  814 (1025)
Q Consensus       800 ~L~~LdLs~N~l~g~  814 (1025)
                      +|+.|+|++|.+++.
T Consensus       180 ~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          180 KLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSCCBCTT
T ss_pred             CCCEEEeeCCceeCC
Confidence            888888888888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.5e-21  Score=218.44  Aligned_cols=211  Identities=17%  Similarity=0.197  Sum_probs=144.1

Q ss_pred             CcccEEEccCcccccc-CCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccC-ccccc-CCccccCCCCccE
Q 047190          559 HLLTYLDLSNNLLSGR-LPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNN-SLSGG-LPSFFMNGSQLTL  635 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~  635 (1025)
                      ++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            5577777777777655 6666777777777777777777666677777777777777777 56652 5566777777888


Q ss_pred             EeCCCC-cCccc-cChhhhhcCC-CCcEEEeecC--cCc-ccCcccccccCcccEEEccccc-cccccCccccCcccccc
Q 047190          636 MDLGKN-GLSGE-IPTWIGESLP-NLVVLSLRSN--KFH-GNIPFQLCYLSHIQILDLSLNN-ISGIIPKCFHNFTAMTK  708 (1025)
Q Consensus       636 L~Ls~N-~l~g~-ip~~~~~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~l~~  708 (1025)
                      |++++| .+++. ++..+. .++ +|++|+|++|  .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|  
T Consensus       173 L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L--  249 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL--  249 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC--
T ss_pred             EcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC--
Confidence            888887 77654 455554 577 7888888877  454 4556666777788888888877 665656555555444  


Q ss_pred             ccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCC-CCCcChhhHhhcccCCeEeccCccc
Q 047190          709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNK-LGGKVLEEIMDLVGLVALNLSNNNL  787 (1025)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l  787 (1025)
                                                                   +.|++++|. ++......++++++|+.|++++| +
T Consensus       250 ---------------------------------------------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i  283 (336)
T 2ast_B          250 ---------------------------------------------QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V  283 (336)
T ss_dssp             ---------------------------------------------CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred             ---------------------------------------------CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence                                                         677777774 33222235777888888888887 2


Q ss_pred             cccCCCCCCCCC-CccEEeCCCCcCCCcCcccccC
Q 047190          788 TGQITPRIGQLK-SLDFLDLSRNHFFGGIPSSLSR  821 (1025)
Q Consensus       788 ~g~ip~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~  821 (1025)
                      +   ...+..+. +++.|++++|++++..|..+++
T Consensus       284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          284 P---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             C---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             C---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            2   22344443 4777778888888888877664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.4e-19  Score=213.56  Aligned_cols=189  Identities=23%  Similarity=0.332  Sum_probs=137.0

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      .+|+.|++++|.+++ +|..+  +++|++|+|++|.++ .+|   ..+++|++|++++|++++ +|. +.+  +|+.|+|
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            468899999999886 66655  378899999999888 566   346888888888888887 565 554  8888888


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|++++ +|.    .+++|++|+|++|++++ +|.   .+++|+.|+|++|++++ +|. |.  ++|            
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L------------  182 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL------------  182 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC------------
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC------------
Confidence            8888884 776    37788888888888886 554   56788888888888876 555 43  333            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccC-------CeEeccCccccccC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGL-------VALNLSNNNLTGQI  791 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L-------~~L~Ls~N~l~g~i  791 (1025)
                                                         +.|||++|+|+ .+|. +..  +|       +.|+|++|+|+ .+
T Consensus       183 -----------------------------------~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~l  222 (571)
T 3cvr_A          183 -----------------------------------EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HI  222 (571)
T ss_dssp             -----------------------------------CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CC
T ss_pred             -----------------------------------CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ec
Confidence                                               67777888777 4454 443  55       77777777777 46


Q ss_pred             CCCCCCCCCccEEeCCCCcCCCcCcccccCCC
Q 047190          792 TPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR  823 (1025)
Q Consensus       792 p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~  823 (1025)
                      |..+..+++|+.|||++|.+++.+|..+..++
T Consensus       223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            66666677777777777777777777666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=9.6e-20  Score=215.05  Aligned_cols=134  Identities=29%  Similarity=0.386  Sum_probs=64.6

Q ss_pred             CCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEc
Q 047190          535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL  614 (1025)
Q Consensus       535 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  614 (1025)
                      +++.|++++|.+++.....    .++|++|+|++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            4555555555554422211    134555555555555 334   224455555555555554 333 332  5555555


Q ss_pred             ccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190          615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                      ++|++++ +|.   .+++|+.|++++|++++ +|.    .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+|+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            5555554 333   34555555555555552 443    24455555555555554 333 33  55555555555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.6e-19  Score=185.23  Aligned_cols=137  Identities=21%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            45666666665 334333  346666677666666555555666666666666666666555555566666666666666


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccC
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHN  702 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  702 (1025)
                      +++ .+|...+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence            666 333333224566666666666666555545555556666666666555444433333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=6.4e-19  Score=197.93  Aligned_cols=224  Identities=21%  Similarity=0.192  Sum_probs=165.8

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCC-cccccccCCCE-EEcccCcccccCCccccCCCCccEE
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP-DSMSFLRSIGS-LSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      +++++|+|++|+|+...+++|.++++|++|+|++|++.+.+| ..|.+++++.+ +.+++|++++..|..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            468889999999986666788999999999999999876554 46778888775 5667789998888899999999999


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeec-CcCcccCcccccccC-cccEEEccccccccccCccccCccccccccccCc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRS-NKFHGNIPFQLCYLS-HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL  714 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~  714 (1025)
                      ++++|+++ .+|...+....++..|++.+ |++....+..+..+. .++.|+|++|+++...+..| ....         
T Consensus       110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~---------  178 (350)
T 4ay9_X          110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQ---------  178 (350)
T ss_dssp             EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEE---------
T ss_pred             cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccc---------
Confidence            99999998 45544333566788888866 567666666677764 58889999999985444433 2222         


Q ss_pred             ccccccccccccccccceeEeecccCCccceeeccccceeEEEccc-CCCCCcChhhHhhcccCCeEeccCccccccCCC
Q 047190          715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS-NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP  793 (1025)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~-N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  793 (1025)
                                                            ++.+++++ |.++...++.|.++++|++|||++|+|+...+.
T Consensus       179 --------------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          179 --------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             --------------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             --------------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence                                                  27788876 555554456789999999999999999976665


Q ss_pred             CCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcc
Q 047190          794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNF  835 (1025)
Q Consensus       794 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l  835 (1025)
                      .+.+   |+.|.+.++.--..+| .+.++++|+.++++++.-
T Consensus       221 ~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          221 GLEN---LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             SCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             hhcc---chHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            5554   4555544443334566 488899999999987653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.6e-19  Score=186.81  Aligned_cols=81  Identities=22%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|+|++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|+|++|.+.+..       +.|+.|+++.|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n  175 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHH
Confidence            44555555555555555566666677777777777666666677777777777777666543       35667777777


Q ss_pred             cccccCCC
Q 047190          834 NFSGKIPK  841 (1025)
Q Consensus       834 ~l~g~ip~  841 (1025)
                      +++|.+|.
T Consensus       176 ~~~g~ip~  183 (208)
T 2o6s_A          176 KHSGVVRN  183 (208)
T ss_dssp             HCTTTBBC
T ss_pred             hCCceeec
Confidence            77777775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=4.3e-19  Score=184.89  Aligned_cols=157  Identities=25%  Similarity=0.252  Sum_probs=134.7

Q ss_pred             cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCc-ccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190          634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP-FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  712 (1025)
                      +.+++++|.++ .+|..+.   +.+++|+|++|++++..| ..+..+++|+.|+|++|++++..|..|..+++|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            46778888877 6776543   456788888888887754 457888888888888888887777777776666      


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT  792 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  792 (1025)
                                                               +.|+|++|++++..|..|..+++|++|+|++|+|++.+|
T Consensus        84 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           84 -----------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             -----------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred             -----------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence                                                     788999999998888889999999999999999999999


Q ss_pred             CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       793 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      ..|+.+++|++|||++|++++..|..+..+++|+.|++++|+++|.++.
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            9999999999999999999999999999999999999999999988663

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.4e-18  Score=195.27  Aligned_cols=244  Identities=18%  Similarity=0.114  Sum_probs=180.0

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCC-ccccCCCCccE-EeCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLP-SFFMNGSQLTL-MDLG  639 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~Ls  639 (1025)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|.. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56888888888 667665  3689999999999997767788999999999999999876555 57888888765 6667


Q ss_pred             CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccc-cccccccCccccCccccccccccCccccc
Q 047190          640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSL-NNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      .|+++ .+|...+..+++|++|++++|++.+..+..+....++..+++.+ |++....+..|..+..             
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-------------  154 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-------------  154 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-------------
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-------------
Confidence            78898 55544444799999999999999877777777778888888866 4555444444443322             


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccC-ccccccCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSN-NNLTGQITPRIGQ  797 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~  797 (1025)
                                                       .++.|+|++|+++. +|.......+|+.|++++ |.++...+..|++
T Consensus       155 ---------------------------------~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          155 ---------------------------------ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             ---------------------------------SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred             ---------------------------------hhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence                                             23789999999986 444555667899999986 5666555567899


Q ss_pred             CCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCC
Q 047190          798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC  860 (1025)
Q Consensus       798 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lc  860 (1025)
                      +++|++||||+|+|+...+..   +..|+.|.+.+++--..+|....+..+.... .+|++.|
T Consensus       201 l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~-l~~~~~c  259 (350)
T 4ay9_X          201 ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEAS-LTYPSHC  259 (350)
T ss_dssp             EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEE-CSCHHHH
T ss_pred             CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCc-CCCCccc
Confidence            999999999999999765544   4566677776666566778655555554322 3455655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.6e-18  Score=180.51  Aligned_cols=155  Identities=25%  Similarity=0.316  Sum_probs=130.5

Q ss_pred             cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccC
Q 047190          634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN  713 (1025)
Q Consensus       634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  713 (1025)
                      +.++++++.++ .+|..+   .++|++|+|++|++++..+..+..+++|+.|+|++|++++..|..|..+++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            46777777777 677654   3578888888888887777778888888888888888887778777776666       


Q ss_pred             cccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCC
Q 047190          714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP  793 (1025)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  793 (1025)
                                                              +.|+|++|++++..+..|..+++|++|+|++|+|++..|.
T Consensus        83 ----------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           83 ----------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ----------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence                                                    7788888888877777788899999999999999999999


Q ss_pred             CCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccC
Q 047190          794 RIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKI  839 (1025)
Q Consensus       794 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~i  839 (1025)
                      .|+.+++|++|||++|++++..+..+..+++|+.|++++|++.+..
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            9999999999999999999998888999999999999999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=5.1e-18  Score=178.03  Aligned_cols=156  Identities=24%  Similarity=0.241  Sum_probs=129.5

Q ss_pred             ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190          633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  712 (1025)
                      .+.++.++++++ .+|..+   .++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..++.|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            456777777776 777654   3678888888888888778888888888888888888876655666666555      


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT  792 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  792 (1025)
                                                               +.|||++|++++..+..+..+++|++|+|++|+|+ .+|
T Consensus        91 -----------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp  128 (229)
T 3e6j_A           91 -----------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP  128 (229)
T ss_dssp             -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             -----------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence                                                     77888888888877778888999999999999999 788


Q ss_pred             CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190          793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       793 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip  840 (1025)
                      ..++.+++|+.|||++|++++..+..+..+++|+.|++++|++.|..+
T Consensus       129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            889999999999999999998888889999999999999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=6e-18  Score=176.21  Aligned_cols=137  Identities=22%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190          633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  712 (1025)
                      +++|+|++|++++..|...+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..|..|..+++|      
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------  107 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------  107 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence            45566666666544343333356666666666666666666666677777777777777776666666655555      


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT  792 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  792 (1025)
                                                               +.|+|++|++++..|..|..+++|+.|+|++|+|++.+|
T Consensus       108 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A          108 -----------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             -----------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             -----------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence                                                     667777777777777778888889999999999999889


Q ss_pred             CCCCCCCCccEEeCCCCcCCCcCc
Q 047190          793 PRIGQLKSLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       793 ~~~~~l~~L~~LdLs~N~l~g~ip  816 (1025)
                      ..|+.+++|+.|+|++|.+++..+
T Consensus       147 ~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          147 GAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTTCTTCCEEECCSCCEECSGG
T ss_pred             HHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999999987654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=9.2e-18  Score=182.98  Aligned_cols=189  Identities=22%  Similarity=0.278  Sum_probs=109.5

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK  640 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (1025)
                      +..+.+..+.+++..+  +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|+.|++++
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            3344555555553322  33456666666666666533 2 35555666666666666654333  55555555555555


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY  720 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  720 (1025)
                      |+++ .+|. +. .+++|++|++++|++++.  ..+..+++|                                      
T Consensus       100 n~l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L--------------------------------------  136 (291)
T 1h6t_A          100 NKVK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL--------------------------------------  136 (291)
T ss_dssp             SCCC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC--------------------------------------
T ss_pred             CcCC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC--------------------------------------
Confidence            5555 2332 22 345555555555554432  234444444                                      


Q ss_pred             ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190          721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS  800 (1025)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  800 (1025)
                                                       +.|++++|++++.  ..+..+++|+.|+|++|++++..|  ++.+++
T Consensus       137 ---------------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  179 (291)
T 1h6t_A          137 ---------------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK  179 (291)
T ss_dssp             ---------------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             ---------------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence                                             4555555555543  355666777777777777776655  777777


Q ss_pred             ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccc
Q 047190          801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG  837 (1025)
Q Consensus       801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g  837 (1025)
                      |+.|+|++|++++. | .+..+++|+.|++++|++++
T Consensus       180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777777763 3 37777778888888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.1e-18  Score=188.08  Aligned_cols=148  Identities=24%  Similarity=0.266  Sum_probs=119.1

Q ss_pred             CceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcc
Q 047190          536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLY  615 (1025)
Q Consensus       536 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  615 (1025)
                      +..+.+..+.+.+....   ..++.|+.|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        26 ~~~~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHhcCCCcccccch---hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            44455666666554332   2357899999999999854 4 48889999999999999997654  8999999999999


Q ss_pred             cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc
Q 047190          616 NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI  695 (1025)
Q Consensus       616 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  695 (1025)
                      +|++++.  ..+..+++|+.|++++|++++ ++ .+. .+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus        99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A           99 ENKVKDL--SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             SSCCCCG--GGGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcCCCC--hhhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            9999863  349999999999999999984 54 455 699999999999999875  5778888888888888887754


Q ss_pred             cC
Q 047190          696 IP  697 (1025)
Q Consensus       696 ~p  697 (1025)
                      .|
T Consensus       172 ~~  173 (291)
T 1h6t_A          172 VP  173 (291)
T ss_dssp             GG
T ss_pred             hh
Confidence            33

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.2e-18  Score=204.55  Aligned_cols=192  Identities=22%  Similarity=0.270  Sum_probs=130.6

Q ss_pred             CCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEc
Q 047190          535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSL  614 (1025)
Q Consensus       535 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  614 (1025)
                      .+..+.+..+.+.+..+.   ..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..|  +..+++|+.|+|
T Consensus        22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            344555666655544332   234667778888887774 33 47777788888888887776544  777778888888


Q ss_pred             ccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc
Q 047190          615 YNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG  694 (1025)
Q Consensus       615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  694 (1025)
                      ++|.+++. | .+..+++|+.|+|++|+++ .+| .+. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++
T Consensus        95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           95 DENKIKDL-S-SLKDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSSCCCCC-T-TSTTCTTCCEEECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCCCC-h-hhccCCCCCEEEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            88877752 2 5777777888888888777 343 344 577777777777777764  467777777777777777776


Q ss_pred             ccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhc
Q 047190          695 IIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDL  774 (1025)
Q Consensus       695 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l  774 (1025)
                      ..|  +..+++|                                               +.|+|++|++++.  ..+..+
T Consensus       168 ~~~--l~~l~~L-----------------------------------------------~~L~Ls~N~i~~l--~~l~~l  196 (605)
T 1m9s_A          168 IVP--LAGLTKL-----------------------------------------------QNLYLSKNHISDL--RALAGL  196 (605)
T ss_dssp             CGG--GTTCTTC-----------------------------------------------CEEECCSSCCCBC--GGGTTC
T ss_pred             chh--hccCCCC-----------------------------------------------CEEECcCCCCCCC--hHHccC
Confidence            655  5444444                                               6677777777764  357777


Q ss_pred             ccCCeEeccCccccccC
Q 047190          775 VGLVALNLSNNNLTGQI  791 (1025)
Q Consensus       775 ~~L~~L~Ls~N~l~g~i  791 (1025)
                      ++|+.|+|++|.+++..
T Consensus       197 ~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          197 KNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCSEEECCSEEEECCC
T ss_pred             CCCCEEEccCCcCcCCc
Confidence            77777777777777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=3.4e-18  Score=192.76  Aligned_cols=178  Identities=24%  Similarity=0.222  Sum_probs=103.0

Q ss_pred             CEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCcccc-CCCCccEEeCCCCcCccccChhhhhcCCCCcEEEee
Q 047190          586 AILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFM-NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLR  664 (1025)
Q Consensus       586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~  664 (1025)
                      +.+++++|.++. +|..+.  ..++.|+|++|++++..+..|. ++++|+.|+|++|++++..|..+. .+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence            466666666663 444432  3455666666666655555554 555555555555555522222232 44555555555


Q ss_pred             cCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccc
Q 047190          665 SNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQY  744 (1025)
Q Consensus       665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (1025)
                      +|++++..+..|..+++|++                                                            
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~------------------------------------------------------------  116 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEV------------------------------------------------------------  116 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCE------------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCE------------------------------------------------------------
Confidence            55554444444444444444                                                            


Q ss_pred             eeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC---CCCCCccEEeCCCCcCCCcCcccccC
Q 047190          745 EYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI---GQLKSLDFLDLSRNHFFGGIPSSLSR  821 (1025)
Q Consensus       745 ~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~l~~L~~LdLs~N~l~g~ip~~l~~  821 (1025)
                                 |+|++|++++..|..|.++++|+.|+|++|+|++..+..|   +.+++|+.|||++|+|++..+..+..
T Consensus       117 -----------L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  185 (361)
T 2xot_A          117 -----------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK  185 (361)
T ss_dssp             -----------EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             -----------EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence                       4555555554455555566666666677776665444444   56778888888888888776677777


Q ss_pred             CCC--CCEEECcCCccccc
Q 047190          822 LRL--LSVMDLSYNNFSGK  838 (1025)
Q Consensus       822 l~~--L~~Ldls~N~l~g~  838 (1025)
                      ++.  |+.|++++|++.+.
T Consensus       186 l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          186 LPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             SCHHHHTTEECCSSCEECC
T ss_pred             ccHhhcceEEecCCCccCC
Confidence            765  47788888888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.2e-17  Score=197.27  Aligned_cols=190  Identities=22%  Similarity=0.296  Sum_probs=102.3

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK  640 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (1025)
                      +..+.+..+.+.+..+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3444455555543332  34455566666666655532 2 35555666666666666655433  55566666666666


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY  720 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  720 (1025)
                      |+++ .+| .+. .+++|++|+|++|++.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|              
T Consensus        97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L--------------  155 (605)
T 1m9s_A           97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL--------------  155 (605)
T ss_dssp             SCCC-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC--------------
T ss_pred             CCCC-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC--------------
Confidence            6665 333 333 456666666666665542  2455556666666666665543  233333332              


Q ss_pred             ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190          721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS  800 (1025)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  800 (1025)
                                                       +.|+|++|++++.+|  +..++.|+.|+|++|+|++.  +.++.+++
T Consensus       156 ---------------------------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~  198 (605)
T 1m9s_A          156 ---------------------------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKN  198 (605)
T ss_dssp             ---------------------------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTT
T ss_pred             ---------------------------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCC
Confidence                                             556666666655544  55566666666666666553  23555666


Q ss_pred             ccEEeCCCCcCCCc
Q 047190          801 LDFLDLSRNHFFGG  814 (1025)
Q Consensus       801 L~~LdLs~N~l~g~  814 (1025)
                      |+.|+|++|++++.
T Consensus       199 L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          199 LDVLELFSQECLNK  212 (605)
T ss_dssp             CSEEECCSEEEECC
T ss_pred             CCEEEccCCcCcCC
Confidence            66666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=2e-20  Score=222.39  Aligned_cols=36  Identities=19%  Similarity=0.026  Sum_probs=24.4

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCc
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS  594 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  594 (1025)
                      ++.|+.|+|++|.++ .+|..++++++|+.|++++|.
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~  383 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKW  383 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHH
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccch
Confidence            355677777777776 567777777777777776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=6.8e-20  Score=217.71  Aligned_cols=191  Identities=23%  Similarity=0.230  Sum_probs=107.4

Q ss_pred             cCCCCCcEEEccCCCCCCCCCcccccCccccccccccccc-------------CCCCcchhccCCCCCCEEe-cccCCCC
Q 047190          109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQ-------------FAGPIPHQLGNLSKLQVLD-LRFNNLF  174 (1025)
Q Consensus       109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~L~~L~~L~-Ls~n~i~  174 (1025)
                      ..+++|+.|+|++|.++  .+|+.++.|++|+.|++++|.             +.+.+|..++++++|++|+ ++.|.+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence            45667777777777765  367777777777777776553             3334444444444444444 333321 


Q ss_pred             CCCCchhcccCCCCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCC
Q 047190          175 SSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNS  254 (1025)
Q Consensus       175 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  254 (1025)
                                 .+|+.+.+++|.++.++.                                   ..|+.|++++|.+++ 
T Consensus       423 -----------~~L~~l~l~~n~i~~l~~-----------------------------------~~L~~L~Ls~n~l~~-  455 (567)
T 1dce_A          423 -----------DDLRSKFLLENSVLKMEY-----------------------------------ADVRVLHLAHKDLTV-  455 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHH-----------------------------------TTCSEEECTTSCCSS-
T ss_pred             -----------chhhhhhhhcccccccCc-----------------------------------cCceEEEecCCCCCC-
Confidence                       122223333333222110                                   234555555555554 


Q ss_pred             CchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcc-hHHhh
Q 047190          255 IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL-SEFIQ  333 (1025)
Q Consensus       255 ~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~  333 (1025)
                      +|. +..+..  |+.|+|++|.++ .+|..++.+++|+.|+|++|.++++| .++.+++|++|+|++|.+++.. |..+.
T Consensus       456 lp~-~~~l~~--L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~  530 (567)
T 1dce_A          456 LCH-LEQLLL--VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLV  530 (567)
T ss_dssp             CCC-GGGGTT--CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CcC-cccccc--CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence            343 555555  666666666666 45666666666666666666666666 5666666666666666666655 66666


Q ss_pred             hcCCCCCCCCCCcEEEccccccccccCC
Q 047190          334 NVSSGSTKNSSLEWLYLAFNEITGTIPD  361 (1025)
Q Consensus       334 ~l~~~~~~~~~L~~L~L~~n~l~~~~p~  361 (1025)
                      .++       +|+.|+|++|.+++.+|.
T Consensus       531 ~l~-------~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          531 SCP-------RLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GCT-------TCCEEECTTSGGGGSSSC
T ss_pred             cCC-------CCCEEEecCCcCCCCccH
Confidence            555       666666666666655443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=3.7e-17  Score=184.29  Aligned_cols=176  Identities=26%  Similarity=0.222  Sum_probs=148.8

Q ss_pred             eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccc
Q 047190          518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG  597 (1025)
Q Consensus       518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  597 (1025)
                      ++++++.++......+..++.|++++|++++..+......+++|+.|+|++|+|++..+..|.++++|++|+|++|++++
T Consensus        23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence            55555555543334566789999999999887665443256889999999999998888899999999999999999998


Q ss_pred             cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhh---hcCCCCcEEEeecCcCcccCcc
Q 047190          598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIG---ESLPNLVVLSLRSNKFHGNIPF  674 (1025)
Q Consensus       598 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~---~~l~~L~~L~L~~N~l~~~~p~  674 (1025)
                      ..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+++ .+|..++   ..+++|++|+|++|+|++..+.
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence            88888999999999999999999998999999999999999999999 6887765   3589999999999999987777


Q ss_pred             cccccCc--ccEEEcccccccc
Q 047190          675 QLCYLSH--IQILDLSLNNISG  694 (1025)
Q Consensus       675 ~l~~l~~--L~~L~Ls~N~l~~  694 (1025)
                      .+..++.  ++.|+|++|++..
T Consensus       182 ~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSCEEC
T ss_pred             HhhhccHhhcceEEecCCCccC
Confidence            8888887  4899999999984

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=5.1e-18  Score=208.11  Aligned_cols=192  Identities=20%  Similarity=0.236  Sum_probs=101.4

Q ss_pred             CCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcc
Q 047190          591 ANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG  670 (1025)
Q Consensus       591 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~  670 (1025)
                      +.|.+. ..|..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+. .+++|++|+|++|+|+ 
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-
Confidence            334443 44566666777777777777776 45555557777777777777777 7777665 5777777777777777 


Q ss_pred             cCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccc
Q 047190          671 NIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL  750 (1025)
Q Consensus       671 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1025)
                      .+|..+..+++|++|+|++|.|+ .+|..|+.+++|                                            
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L--------------------------------------------  318 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL--------------------------------------------  318 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC--------------------------------------------
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc--------------------------------------------
Confidence            56777777777777777777776 566666666655                                            


Q ss_pred             cceeEEEcccCCCCCcChhhHhhccc-CCeEeccCccccccCCCCCCCCCCccEEeCCCC--------cCCCcCcccccC
Q 047190          751 GLIKIIDLSSNKLGGKVLEEIMDLVG-LVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN--------HFFGGIPSSLSR  821 (1025)
Q Consensus       751 ~~l~~LdLs~N~l~~~ip~~~~~l~~-L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N--------~l~g~ip~~l~~  821 (1025)
                         +.|+|++|+|++.+|..+..+.. +..|+|++|.++|.+|.      .|+.|++++|        .|.+.++..+.+
T Consensus       319 ---~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          319 ---QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             ---CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------
T ss_pred             ---cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhc
Confidence               66777777777777777765432 23467888888877775      3455666666        455555566667


Q ss_pred             CCCCCEEECcCCcccccCCC
Q 047190          822 LRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       822 l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      +..+....+++|-+.+....
T Consensus       390 l~~~~~~~ls~Nil~~~~~~  409 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLCQHYAT  409 (727)
T ss_dssp             ------------CCCGGGCC
T ss_pred             ccccceeeeeccccccccCc
Confidence            77778888888888755443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=6.5e-17  Score=168.37  Aligned_cols=141  Identities=23%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      +.++++++.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45666666666 3454433  46667777777766666666666667777777777776666666777777777777777


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccc
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAM  706 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l  706 (1025)
                      +++ .+|..++..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            776 5555554456777777777777776666667777777777777777776655555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=3.9e-18  Score=209.16  Aligned_cols=192  Identities=22%  Similarity=0.232  Sum_probs=126.8

Q ss_pred             EEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcC
Q 047190          564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL  643 (1025)
Q Consensus       564 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  643 (1025)
                      ++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            344444444 55788999999999999999998 67777889999999999999999 7889999999999999999999


Q ss_pred             ccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccc
Q 047190          644 SGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYN  723 (1025)
Q Consensus       644 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  723 (1025)
                      + .+|..+. .+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|++.+|..+..+....                
T Consensus       283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~----------------  343 (727)
T 4b8c_D          283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG----------------  343 (727)
T ss_dssp             S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH----------------
T ss_pred             C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh----------------
Confidence            9 8999987 7999999999999997 7788899999999999999999999998876543220                


Q ss_pred             cccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCc--------cccccCCCCC
Q 047190          724 LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNN--------NLTGQITPRI  795 (1025)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N--------~l~g~ip~~~  795 (1025)
                                                    ..++|++|.++|.+|.      .|+.|++++|        .|.+.++..+
T Consensus       344 ------------------------------~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~  387 (727)
T 4b8c_D          344 ------------------------------LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLA  387 (727)
T ss_dssp             ------------------------------HHHHHHHCCCCCCCCC------C---------------------------
T ss_pred             ------------------------------hHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchh
Confidence                                          2367889999999886      4556677777        5666666667


Q ss_pred             CCCCCccEEeCCCCcCCC
Q 047190          796 GQLKSLDFLDLSRNHFFG  813 (1025)
Q Consensus       796 ~~l~~L~~LdLs~N~l~g  813 (1025)
                      ..+..++...+++|.+.+
T Consensus       388 ~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          388 TDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             --------------CCCG
T ss_pred             hcccccceeeeecccccc
Confidence            778888888999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.6e-17  Score=165.90  Aligned_cols=154  Identities=16%  Similarity=0.196  Sum_probs=92.7

Q ss_pred             CCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccc
Q 047190          629 NGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK  708 (1025)
Q Consensus       629 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  708 (1025)
                      .+++|+.|++++|.++ .+| .+. .+++|++|++++|.++.  +..+..+++|++|++++|++++..|..++.+++|  
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--  114 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--  114 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC--
T ss_pred             hcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC--
Confidence            3344555555555554 444 233 35555555555554432  2345555666666666666665555555544444  


Q ss_pred             ccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccc
Q 047190          709 EKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLT  788 (1025)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~  788 (1025)
                                                                   +.|+|++|++++..|..+..+++|++|+|++|++.
T Consensus       115 ---------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          115 ---------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             ---------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             ---------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence                                                         56666666666666677777777777777777733


Q ss_pred             ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccc
Q 047190          789 GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG  837 (1025)
Q Consensus       789 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g  837 (1025)
                      +.+| .++.+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus       150 ~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 TDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            3444 577778888888888888763 3 67778888888888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.5e-17  Score=169.15  Aligned_cols=88  Identities=22%  Similarity=0.257  Sum_probs=63.3

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|+|++|++++.+|..|.+++.|++|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+++|++|++++|
T Consensus        57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            44555555555555555666667777777777777777777777778888888888888777777777788888888888


Q ss_pred             cccccCCC
Q 047190          834 NFSGKIPK  841 (1025)
Q Consensus       834 ~l~g~ip~  841 (1025)
                      +++|.++.
T Consensus       137 ~l~c~c~l  144 (192)
T 1w8a_A          137 PFNCNCHL  144 (192)
T ss_dssp             CBCCSGGG
T ss_pred             CccCcCcc
Confidence            88777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=2e-16  Score=165.79  Aligned_cols=137  Identities=21%  Similarity=0.108  Sum_probs=126.2

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            67899999999999988999999999999999999998777777899999999999999999888888999999999999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccC
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP  697 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  697 (1025)
                      ++|+++ .+|..+. .+++|++|+|++|++++..+..+..+++|+.|+|++|++.+..+
T Consensus       120 s~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999 8998887 79999999999999998888889999999999999999986544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=2.7e-17  Score=176.37  Aligned_cols=169  Identities=20%  Similarity=0.254  Sum_probs=99.0

Q ss_pred             cCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEE
Q 047190          607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILD  686 (1025)
Q Consensus       607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  686 (1025)
                      .++..+++++|.+++..  .+..+++|+.|++++|+++ .+| .+. .+++|++|+|++|++++..+  +..+++|+.|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            34444444455444322  3444555555555555554 444 233 45555555555555554333  55556666666


Q ss_pred             ccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCc
Q 047190          687 LSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGK  766 (1025)
Q Consensus       687 Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~  766 (1025)
                      |++|++++. |....  +                                               .|+.|+|++|++++.
T Consensus        92 L~~N~l~~l-~~~~~--~-----------------------------------------------~L~~L~L~~N~l~~~  121 (263)
T 1xeu_A           92 VNRNRLKNL-NGIPS--A-----------------------------------------------CLSRLFLDNNELRDT  121 (263)
T ss_dssp             CCSSCCSCC-TTCCC--S-----------------------------------------------SCCEEECCSSCCSBS
T ss_pred             CCCCccCCc-Ccccc--C-----------------------------------------------cccEEEccCCccCCC
Confidence            666665532 21100  1                                               225666666666653


Q ss_pred             ChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190          767 VLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       767 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                        ..+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.  ..+..+++|+.|++++|++++.
T Consensus       122 --~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 --DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence              2466777777777777777764 2 577777777777777777766  5677777777788877777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1e-16  Score=163.88  Aligned_cols=154  Identities=18%  Similarity=0.188  Sum_probs=93.9

Q ss_pred             cccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccE
Q 047190          605 FLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQI  684 (1025)
Q Consensus       605 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  684 (1025)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+. .+++|++|++++|++++..|..+..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3444555555555554 223 3555555555555555443 22 2333 4666666666666666656666666666777


Q ss_pred             EEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCC
Q 047190          685 LDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG  764 (1025)
Q Consensus       685 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~  764 (1025)
                      |++++|++++..|..++.+++|                                               +.|++++|++.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L-----------------------------------------------~~L~L~~n~~i  149 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKV-----------------------------------------------NSIDLSYNGAI  149 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSC-----------------------------------------------CEEECCSCTBC
T ss_pred             EEecCCccCcHhHHHHhhCCCC-----------------------------------------------CEEEccCCCCc
Confidence            7777776666555555555444                                               66677777633


Q ss_pred             CcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCC
Q 047190          765 GKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFG  813 (1025)
Q Consensus       765 ~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g  813 (1025)
                      +.+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus       150 ~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 TDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             cccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            3344 577788888888888888763 3 67888888888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=5.4e-17  Score=165.10  Aligned_cols=132  Identities=27%  Similarity=0.335  Sum_probs=107.0

Q ss_pred             cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcc-cccccCcccEEEccccccccccCccccCcccccccccc
Q 047190          634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPF-QLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  712 (1025)
                      +.+++++|+++ .+|..+.   .+|++|++++|++++..+. .+..+++|++|+|++|++++..|..|+.++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56777777775 6776553   3777888888887766654 47778888888888888887777777766665      


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT  792 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  792 (1025)
                                                               +.|+|++|++++..|..|.++++|++|+|++|+|++.+|
T Consensus        81 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           81 -----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             -----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             -----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence                                                     778888888888888888888999999999999999999


Q ss_pred             CCCCCCCCccEEeCCCCcCCCcCc
Q 047190          793 PRIGQLKSLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       793 ~~~~~l~~L~~LdLs~N~l~g~ip  816 (1025)
                      ..++.+++|++|+|++|.+++..+
T Consensus       120 ~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          120 GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             HHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999999999999999998765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=2.9e-17  Score=176.07  Aligned_cols=123  Identities=19%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ..++.+++++|.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            44666677777766433  45666777777777777663 33 46666666666666666665433  666666666666


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                      ++|+++ .+|...  . ++|++|+|++|++++. + .+..+++|+.|+|++|+++
T Consensus        93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence            666665 344321  1 5555555555555542 1 3444555555555555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=3.3e-15  Score=148.45  Aligned_cols=134  Identities=22%  Similarity=0.174  Sum_probs=98.0

Q ss_pred             CCCCcEEEeecCcCc-ccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccccccccccccee
Q 047190          655 LPNLVVLSLRSNKFH-GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPL  733 (1025)
Q Consensus       655 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (1025)
                      .++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..++.++.|                           
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   73 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL---------------------------   73 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC---------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC---------------------------
Confidence            456666777776666 55666666677777777777776654  444444443                           


Q ss_pred             EeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC-CCCCCCCCCccEEeCCCCcCC
Q 047190          734 IFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI-TPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~  812 (1025)
                                          +.|+|++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|++|++++|.++
T Consensus        74 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           74 --------------------KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             --------------------CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             --------------------CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence                                67777777777777777777888888888888888753 267888888888888888888


Q ss_pred             CcCc---ccccCCCCCCEEECcCCcccc
Q 047190          813 GGIP---SSLSRLRLLSVMDLSYNNFSG  837 (1025)
Q Consensus       813 g~ip---~~l~~l~~L~~Ldls~N~l~g  837 (1025)
                      +..+   ..+..+++|++||+++|.+..
T Consensus       134 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          134 NLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             chHHHHHHHHHhCccCcEecCCCCChhh
Confidence            7665   578888888888888887754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=5e-15  Score=164.64  Aligned_cols=219  Identities=14%  Similarity=0.099  Sum_probs=157.0

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCc----ccccCCccccCCCCc
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNS----LSGGLPSFFMNGSQL  633 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L  633 (1025)
                      +++|+.|+|.+ .++.+.+.+|.+|++|+.|++++|.+....+..|..+.++..+.+..+.    ........|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            67788888888 7776667778888888888888888877777777777767666665532    222334456667777


Q ss_pred             c-EEeCCCCcCccccChhhhhc---CCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccc
Q 047190          634 T-LMDLGKNGLSGEIPTWIGES---LPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE  709 (1025)
Q Consensus       634 ~-~L~Ls~N~l~g~ip~~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  709 (1025)
                      + .+++...   +.++..++..   ..++..+.+.++-.......-...+++|+.++|++|+++...+.+|.++++|   
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---  252 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---  252 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence            7 5555443   2444444322   4566777776653322111111237889999999988886666778777776   


Q ss_pred             cccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCC-eEeccCcccc
Q 047190          710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLV-ALNLSNNNLT  788 (1025)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~-~L~Ls~N~l~  788 (1025)
                                                                  +.|+|++| ++...+..|.++++|+ .+++.+ +++
T Consensus       253 --------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~  286 (329)
T 3sb4_A          253 --------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT  286 (329)
T ss_dssp             --------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred             --------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence                                                        77888887 7777777888999998 999988 788


Q ss_pred             ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEE
Q 047190          789 GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD  829 (1025)
Q Consensus       789 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ld  829 (1025)
                      ...+.+|.++++|+.+++++|+++...+..|.++++|+.+.
T Consensus       287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77788899999999999999999988888899898888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=8.3e-15  Score=148.82  Aligned_cols=87  Identities=25%  Similarity=0.264  Sum_probs=67.6

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|||++|++++..+..|.+++.|++|+|++|+|++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|++++|
T Consensus        57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            44555555555555556666777888888888888888888888889999999999998777777888899999999999


Q ss_pred             cccccCC
Q 047190          834 NFSGKIP  840 (1025)
Q Consensus       834 ~l~g~ip  840 (1025)
                      ++.|..+
T Consensus       137 ~~~C~c~  143 (193)
T 2wfh_A          137 PLYCDCN  143 (193)
T ss_dssp             CEECSGG
T ss_pred             CeecCCc
Confidence            9887543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.4e-14  Score=161.05  Aligned_cols=264  Identities=16%  Similarity=0.097  Sum_probs=133.0

Q ss_pred             CCcEEEccccccccccCCCCCCCCCcEEEeecccccCcccccccc--------cCCcceeeccCcccccccchhhhcCCC
Q 047190          344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQ--------LSKLELLLLSGNSLRGVISEALFSNLS  415 (1025)
Q Consensus       344 ~L~~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~~l~  415 (1025)
                      +|+.|||++|++......-+.++.++.+.+..|.+   ....|.+        +++|+.|+|.+ .++ .++...|.+++
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~  124 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCD  124 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCT
T ss_pred             cCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCc
Confidence            56666666666551111111222234444444422   2234444        77777777777 555 45555677777


Q ss_pred             CCcEEECCCCccccccccCCCCCcccceeeccCCC----CCCCCchhhhcCCccc-EEEccCCCCCCchhhhhhhccccc
Q 047190          416 SLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCK----IGPRFPKWLQSQNQTV-ALDVSNAGISDIVPDWFWDLTNQL  490 (1025)
Q Consensus       416 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~~~----l~~~~p~~l~~~~~L~-~L~Ls~n~i~~~~~~~~~~~~~~L  490 (1025)
                      +|+.++++.|.+....+..|....++..+......    ........|.++..|+ .+++....   ..+..+....   
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~---  198 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG---  198 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT---
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc---
Confidence            77777777777766666666555555444433311    1111122233344443 33332211   1121111110   


Q ss_pred             eEEEccCccCCCCCCCccccccCCCCeeecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCcc
Q 047190          491 YYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL  570 (1025)
Q Consensus       491 ~~L~Ls~N~l~~~~p~~~~~~l~~~~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~  570 (1025)
                                                              ..+.+++.+.+.++-...... .....+++|+.+++++|+
T Consensus       199 ----------------------------------------~~~~~~~~l~~~~~l~~~~~~-~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          199 ----------------------------------------LQPRDINFLTIEGKLDNADFK-LIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             ----------------------------------------CCGGGCSEEEEEECCCHHHHH-HHHHHCTTCCEEECTTBC
T ss_pred             ----------------------------------------cCccccceEEEeeeecHHHHH-HHHHhcCCCeEEECCCCC
Confidence                                                    001222333332221100000 000124567777777777


Q ss_pred             ccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCC-EEEcccCcccccCCccccCCCCccEEeCCCCcCccccCh
Q 047190          571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIG-SLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT  649 (1025)
Q Consensus       571 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~  649 (1025)
                      ++.+.+.+|.++++|+.+++.+| ++...+.+|.++.+|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++ .|+.
T Consensus       238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~  314 (329)
T 3sb4_A          238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD  314 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred             cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence            77556666777777777777766 5555556666666666 666666 555555566666666666666666665 5555


Q ss_pred             hhhhcCCCCcEEE
Q 047190          650 WIGESLPNLVVLS  662 (1025)
Q Consensus       650 ~~~~~l~~L~~L~  662 (1025)
                      ..|.++++|+.++
T Consensus       315 ~aF~~~~~L~~ly  327 (329)
T 3sb4_A          315 ELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTTCCCCEEE
T ss_pred             hhhcCCcchhhhc
Confidence            5554566666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=3.2e-15  Score=145.25  Aligned_cols=129  Identities=19%  Similarity=0.192  Sum_probs=95.9

Q ss_pred             CCCCcEEEeecCcCc-ccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccccccccccccee
Q 047190          655 LPNLVVLSLRSNKFH-GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPL  733 (1025)
Q Consensus       655 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (1025)
                      .++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..++.++.|                           
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   66 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL---------------------------   66 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence            355666777777666 56666666777777777777777654  344444443                           


Q ss_pred             EeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCcccccc-CCCCCCCCCCccEEeCCCCcCC
Q 047190          734 IFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQ-ITPRIGQLKSLDFLDLSRNHFF  812 (1025)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~  812 (1025)
                                          +.|+|++|++++.+|..+..+++|++|++++|++++. .|..++.+++|++|++++|+++
T Consensus        67 --------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           67 --------------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             --------------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             --------------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                                7778888888877788888888888888888888874 4577888888899999999888


Q ss_pred             CcCc---ccccCCCCCCEEECcC
Q 047190          813 GGIP---SSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       813 g~ip---~~l~~l~~L~~Ldls~  832 (1025)
                      +..+   ..+..+++|++||+++
T Consensus       127 ~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          127 NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             chHHHHHHHHHHCCCcccccCCC
Confidence            8766   5788888888888763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.1e-14  Score=146.00  Aligned_cols=87  Identities=23%  Similarity=0.201  Sum_probs=62.0

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|++++|++++..+..+..++.|++|+|++|++++.++..++.+++|++|||++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            34444444444444444556667777777777777777777788888888888888888766666777888888888888


Q ss_pred             cccccCC
Q 047190          834 NFSGKIP  840 (1025)
Q Consensus       834 ~l~g~ip  840 (1025)
                      ++.|.+|
T Consensus       135 ~~~~~~~  141 (177)
T 2o6r_A          135 PWDCSCP  141 (177)
T ss_dssp             CBCCCHH
T ss_pred             CeeccCc
Confidence            8887766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=7e-15  Score=146.05  Aligned_cols=135  Identities=22%  Similarity=0.212  Sum_probs=111.6

Q ss_pred             CcccEEEccCcccc-ccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          559 HLLTYLDLSNNLLS-GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      +.|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            66888888888887 67788888888999999999988865  6788888999999999999887888888889999999


Q ss_pred             CCCCcCccccC--hhhhhcCCCCcEEEeecCcCcccCc---ccccccCcccEEEccccccccccCc
Q 047190          638 LGKNGLSGEIP--TWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSLNNISGIIPK  698 (1025)
Q Consensus       638 Ls~N~l~g~ip--~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~  698 (1025)
                      +++|+++ .+|  ..+. .+++|++|++++|++++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       102 Ls~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CBSSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             ccCCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999988 444  4555 68899999999999987655   47888999999999999887 3443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=145.62  Aligned_cols=129  Identities=26%  Similarity=0.367  Sum_probs=103.4

Q ss_pred             cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccC
Q 047190          634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN  713 (1025)
Q Consensus       634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  713 (1025)
                      +.+++++|+++ .+|..+   .++|++|+|++|+++ .+|..+..+++|+.|+|++|.+++..|..|..++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            46777777776 677654   356777888888776 566777788888888888888887777777766665       


Q ss_pred             cccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCC
Q 047190          714 LSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP  793 (1025)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  793 (1025)
                                                              +.|||++|++++..|..|..+++|+.|+|++|+|++..+.
T Consensus        81 ----------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~  120 (193)
T 2wfh_A           81 ----------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG  120 (193)
T ss_dssp             ----------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             ----------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence                                                    7788888888888888888899999999999999988888


Q ss_pred             CCCCCCCccEEeCCCCcCCCc
Q 047190          794 RIGQLKSLDFLDLSRNHFFGG  814 (1025)
Q Consensus       794 ~~~~l~~L~~LdLs~N~l~g~  814 (1025)
                      .|..+++|+.|+|++|.+...
T Consensus       121 ~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          121 AFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTTCTTCCEEECCSSCEECS
T ss_pred             hhhcCccccEEEeCCCCeecC
Confidence            899999999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=2.3e-14  Score=143.65  Aligned_cols=133  Identities=27%  Similarity=0.260  Sum_probs=106.8

Q ss_pred             ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190          633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  712 (1025)
                      .+.+++++|+++ .+|..+   .++|++|++++|++++..+..+..+++|++|++++|++++..+..|+.++.|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            456777777776 666543   3578888888888877666677788888888888888886666666665555      


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT  792 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  792 (1025)
                                                               +.|+|++|++++..+..+..+++|++|+|++|++++..+
T Consensus        79 -----------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           79 -----------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -----------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence                                                     778888888888877788889999999999999998777


Q ss_pred             CCCCCCCCccEEeCCCCcCCCcCc
Q 047190          793 PRIGQLKSLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       793 ~~~~~l~~L~~LdLs~N~l~g~ip  816 (1025)
                      ..+..+++|++|+|++|.+++..|
T Consensus       118 ~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          118 GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcCCcccCEEEecCCCeeccCc
Confidence            778999999999999999998766

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.3e-14  Score=140.90  Aligned_cols=128  Identities=23%  Similarity=0.205  Sum_probs=108.9

Q ss_pred             CcccEEEccCcccc-ccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          559 HLLTYLDLSNNLLS-GRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            66899999999998 78888888999999999999999876  6788899999999999999987888888899999999


Q ss_pred             CCCCcCccc-cChhhhhcCCCCcEEEeecCcCcccCc---ccccccCcccEEEccc
Q 047190          638 LGKNGLSGE-IPTWIGESLPNLVVLSLRSNKFHGNIP---FQLCYLSHIQILDLSL  689 (1025)
Q Consensus       638 Ls~N~l~g~-ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~  689 (1025)
                      +++|++++. .|..+. .+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999852 235555 68999999999999987766   5788899999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=6.6e-16  Score=158.06  Aligned_cols=152  Identities=24%  Similarity=0.282  Sum_probs=96.9

Q ss_pred             CCCccEEeCCCCcCccccCh------hhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCc
Q 047190          630 GSQLTLMDLGKNGLSGEIPT------WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNF  703 (1025)
Q Consensus       630 l~~L~~L~Ls~N~l~g~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  703 (1025)
                      ...++.++++.+.++|.+|.      .+. .+++|++|+|++|++++ +| .+..+++|+.|++++|.++ .+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            34444445555555544443      554 46677777777776665 45 6666677777777777766 445444333


Q ss_pred             cccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEecc
Q 047190          704 TAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLS  783 (1025)
Q Consensus       704 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls  783 (1025)
                      +.|                                               +.|+|++|++++ +| .+..+++|+.|+++
T Consensus        93 ~~L-----------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           93 DTL-----------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             HHC-----------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CcC-----------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            333                                               667777777766 34 57777777777777


Q ss_pred             CccccccCC-CCCCCCCCccEEeCCCCcCCCcCccc----------ccCCCCCCEEECcCCccc
Q 047190          784 NNNLTGQIT-PRIGQLKSLDFLDLSRNHFFGGIPSS----------LSRLRLLSVMDLSYNNFS  836 (1025)
Q Consensus       784 ~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L~~Ldls~N~l~  836 (1025)
                      +|++++..+ ..++.+++|++|++++|.+++.+|..          +..+++|+.||  +|+++
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            777775433 45677777888888888877776653          67777888776  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=2.8e-15  Score=153.35  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=100.8

Q ss_pred             CCCEEEcccCcccccCCc------cccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCc
Q 047190          608 SIGSLSLYNNSLSGGLPS------FFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSH  681 (1025)
Q Consensus       608 ~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  681 (1025)
                      .++.++++.+.+++..|.      .+..+++|++|++++|++++ +| .+. .+++|++|++++|+++ .+|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            334444444444444333      66667777777777777763 66 444 5777777777777776 45666666677


Q ss_pred             ccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccC
Q 047190          682 IQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN  761 (1025)
Q Consensus       682 L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N  761 (1025)
                      |+.|++++|++++ +| .+..+++|                                               +.|++++|
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L-----------------------------------------------~~L~l~~N  125 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNL-----------------------------------------------RVLYMSNN  125 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHS-----------------------------------------------SEEEESEE
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCC-----------------------------------------------CEEECCCC
Confidence            7777777777775 33 34444433                                               67777777


Q ss_pred             CCCCcCh-hhHhhcccCCeEeccCccccccCCCC----------CCCCCCccEEeCCCCcCCC
Q 047190          762 KLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPR----------IGQLKSLDFLDLSRNHFFG  813 (1025)
Q Consensus       762 ~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~LdLs~N~l~g  813 (1025)
                      ++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       126 ~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            7776433 56788888888888888888887764          77888888887  676664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.7e-13  Score=135.63  Aligned_cols=130  Identities=18%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             CCcccEEEccCccccccCCCcccCC-CCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQF-DSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      +++|+.|++++|.++. +|. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            4678899999998884 454 4444 4899999999999875  678888999999999999997766667889999999


Q ss_pred             eCCCCcCccccCh--hhhhcCCCCcEEEeecCcCcccCcc----cccccCcccEEEcccccccc
Q 047190          637 DLGKNGLSGEIPT--WIGESLPNLVVLSLRSNKFHGNIPF----QLCYLSHIQILDLSLNNISG  694 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~  694 (1025)
                      ++++|+++ .+|.  .+. .+++|++|++++|+++. +|.    .+..+++|+.||+++|.+..
T Consensus        94 ~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999996 6776  555 68999999999999984 455    38889999999999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=4.3e-13  Score=133.14  Aligned_cols=88  Identities=22%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|+|++|++++..|..|..+++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+++|++|++++|
T Consensus        33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            78999999999998999999999999999999999888888999999999999999999988888999999999999999


Q ss_pred             cccccCCC
Q 047190          834 NFSGKIPK  841 (1025)
Q Consensus       834 ~l~g~ip~  841 (1025)
                      ++.+..+.
T Consensus       113 ~~~c~c~~  120 (170)
T 3g39_A          113 PWDCACSD  120 (170)
T ss_dssp             CBCTTBGG
T ss_pred             CCCCCchh
Confidence            99988663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=4.4e-12  Score=143.86  Aligned_cols=219  Identities=11%  Similarity=0.084  Sum_probs=158.5

Q ss_pred             cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG  639 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (1025)
                      +|+.+.+.+ .++.+.+.+|.+|++|+.+++.+|+++......|. ..+|+.+.+.++ +..+...+|.+|++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            477777775 56656667888888888888888888866666666 578888888744 766777788888888888888


Q ss_pred             CCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc-----cccCccccCccccccccccCc
Q 047190          640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS-----GIIPKCFHNFTAMTKEKSSNL  714 (1025)
Q Consensus       640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~l~~~~~~~~  714 (1025)
                      +| ++ .|+...+.+ .+|+.+.+ .+.++...+..|.++++|+.+++.+|.+.     ...+.+|.++++|        
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L--------  302 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL--------  302 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred             CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence            75 55 677777644 78888888 55566666778888888888888887765     2334555555554        


Q ss_pred             ccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCC
Q 047190          715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPR  794 (1025)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  794 (1025)
                                                             +.++|. +.++..-...|.++++|+.++|..| ++..-+.+
T Consensus       303 ---------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          303 ---------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             ---------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             ---------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence                                                   556666 4466555667788888888888544 77666777


Q ss_pred             CCCCCCccEEeCCCCcCCCcCcccccCC-CCCCEEECcCCcc
Q 047190          795 IGQLKSLDFLDLSRNHFFGGIPSSLSRL-RLLSVMDLSYNNF  835 (1025)
Q Consensus       795 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~Ldls~N~l  835 (1025)
                      |.++ +|+.+++++|.+....+..|..+ ..++.+.+..|.+
T Consensus       342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            8888 88888888888777666677766 3677777666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=2.1e-13  Score=136.48  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=45.1

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCC--CCCCCCCccEEeCCCCcCCCcCccc----ccCCCCCCE
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITP--RIGQLKSLDFLDLSRNHFFGGIPSS----LSRLRLLSV  827 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~--~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~  827 (1025)
                      +.|+|++|++++..+..+..+++|+.|+|++|+++ .+|.  .++.+++|+.|++++|.++. +|..    +..++.|+.
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence            33444444444333333455555666666666664 2333  56666666666666666663 3443    666677777


Q ss_pred             EECcCCccc
Q 047190          828 MDLSYNNFS  836 (1025)
Q Consensus       828 Ldls~N~l~  836 (1025)
                      ||++.|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.3e-12  Score=130.07  Aligned_cols=87  Identities=24%  Similarity=0.231  Sum_probs=77.6

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N  833 (1025)
                      +.|+|++|++++.+|..|.++++|+.|+|++|+|++..+..|+.+++|++|||++|+|++..+..+..+++|++|++++|
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            77888999998888888999999999999999999877777899999999999999999877777999999999999999


Q ss_pred             cccccCC
Q 047190          834 NFSGKIP  840 (1025)
Q Consensus       834 ~l~g~ip  840 (1025)
                      ++.+..+
T Consensus       116 ~~~c~~~  122 (174)
T 2r9u_A          116 PWDCECR  122 (174)
T ss_dssp             CBCTTBG
T ss_pred             Ccccccc
Confidence            9987654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=1.4e-11  Score=139.70  Aligned_cols=200  Identities=11%  Similarity=0.106  Sum_probs=137.8

Q ss_pred             cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      .|++|+.+++++|.++.....+|. +.+|+.+.+.++ ++.....+|.++.+|+.+++.+| ++..-..+|.+ .+|+.+
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            456677777777777755555555 567777777643 65566667777777777777764 55555566666 677777


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCc-----ccCcccccccCcccEEEccccccccccCccccCccccccccc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFH-----GNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKS  711 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~  711 (1025)
                      ++ .+.++ .|+...+.++++|+.+++.+|.+.     ...+..|.++++|+.++|. +.++..-..+|.++++|     
T Consensus       254 ~l-p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L-----  325 (401)
T 4fdw_A          254 KL-PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV-----  325 (401)
T ss_dssp             EE-ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC-----
T ss_pred             Ee-CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc-----
Confidence            77 34455 566666667778888888777664     3455677788888888887 44665555666666665     


Q ss_pred             cCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccC
Q 047190          712 SNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQI  791 (1025)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~i  791 (1025)
                                                                +.++|..| ++..-+..|.++ +|+.+++++|.+....
T Consensus       326 ------------------------------------------~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          326 ------------------------------------------TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             ------------------------------------------CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             ------------------------------------------cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence                                                      55666433 555556678888 8889999998888777


Q ss_pred             CCCCCCCC-CccEEeCCCCcCC
Q 047190          792 TPRIGQLK-SLDFLDLSRNHFF  812 (1025)
Q Consensus       792 p~~~~~l~-~L~~LdLs~N~l~  812 (1025)
                      +..|.+++ .++.|++..|.+.
T Consensus       362 ~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          362 EKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CSSCCCSCTTCCEEEECGGGHH
T ss_pred             cccccCCCCCccEEEeCHHHHH
Confidence            77788774 7888888877653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.29  E-value=5.4e-11  Score=135.48  Aligned_cols=83  Identities=16%  Similarity=0.061  Sum_probs=36.0

Q ss_pred             cccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190          578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN  657 (1025)
Q Consensus       578 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  657 (1025)
                      +|..+.+|+.+.+.++ ++..-..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++ .|+...+.++++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence            3444444554444432 33233334444444444444322 33333344445555555555443 33 344443434444


Q ss_pred             CcEEEee
Q 047190          658 LVVLSLR  664 (1025)
Q Consensus       658 L~~L~L~  664 (1025)
                      |+.+++.
T Consensus       368 L~~i~lp  374 (394)
T 4fs7_A          368 LKKVELP  374 (394)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEC
Confidence            4444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=8.5e-12  Score=123.71  Aligned_cols=105  Identities=27%  Similarity=0.260  Sum_probs=50.5

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGK  640 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  640 (1025)
                      .+.+++++|.++ .+|..+  .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            355666666665 344433  24555555555555555555555555555555555555544444444444444444444


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFH  669 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~  669 (1025)
                      |+++ .+|...+..+++|++|+|++|+++
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4444 222222223444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.5e-13  Score=154.34  Aligned_cols=63  Identities=19%  Similarity=0.067  Sum_probs=28.1

Q ss_pred             CCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc-----ccCcccEEEccccccc
Q 047190          631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC-----YLSHIQILDLSLNNIS  693 (1025)
Q Consensus       631 ~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~  693 (1025)
                      ++|+.|+|++|.+++.....+...+++|++|+|++|.++......++     ..++|+.|+|++|.++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence            45555555555554332333333344455555555555433222221     2344555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=1.6e-11  Score=122.23  Aligned_cols=104  Identities=21%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.+            
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------------   79 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK------------   79 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC------------
Confidence            45566666554 3444332  45555555555555544444444444444444444444433333444            


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccc
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                                   +++|++|+|++|+|++..+..+..+++|++|+|++|++.
T Consensus        80 -------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           80 -------------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -------------cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                         555555555555555444444555555555555555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.20  E-value=3.9e-10  Score=128.34  Aligned_cols=141  Identities=12%  Similarity=0.041  Sum_probs=110.1

Q ss_pred             cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      .+..|+.+.+..+... ....+|..+..++.+....+.+.   ...|..+.+|+.+.+.++ ++.+-..+|.+|++|+.+
T Consensus       251 ~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          251 GCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            4577888888877554 66778888999999988776543   356788899999999765 666667889999999999


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMT  707 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~  707 (1025)
                      +|.++ ++ .|+...+.++++|+.+.+..+ ++..-..+|.++++|+.+++..+ ++ .+..+|.++++|+
T Consensus       326 ~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          326 DLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             CCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             EeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence            99765 66 787777778999999999877 77667788999999999999765 33 3456677777663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.4e-12  Score=146.41  Aligned_cols=64  Identities=16%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             CCccEEeCCCCcCccccChhhh----hcCCCCcEEEeecCcCccc----CcccccccCcccEEEcccccccc
Q 047190          631 SQLTLMDLGKNGLSGEIPTWIG----ESLPNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISG  694 (1025)
Q Consensus       631 ~~L~~L~Ls~N~l~g~ip~~~~----~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  694 (1025)
                      ++|+.|+|++|++++.....+.    ...++|++|+|++|.++..    ++..+...++|++|+|++|.++.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence            4556666666666533222222    1245667777777766542    23344556677777777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=5.4e-11  Score=133.12  Aligned_cols=85  Identities=19%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             eEEEccc-CCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190          754 KIIDLSS-NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       754 ~~LdLs~-N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~  832 (1025)
                      +.|+|++ |+|++..+..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            5667764 677666666777777777777777777777777777777777777777777766665665555 77777777


Q ss_pred             CcccccC
Q 047190          833 NNFSGKI  839 (1025)
Q Consensus       833 N~l~g~i  839 (1025)
                      |++.+..
T Consensus       113 N~~~c~c  119 (347)
T 2ifg_A          113 NPLHCSC  119 (347)
T ss_dssp             SCCCCCG
T ss_pred             CCccCCC
Confidence            7776643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=2.5e-10  Score=127.71  Aligned_cols=106  Identities=20%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             cEEEccCc-cccccCCCcccCCCCCCEEEcCC-CcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190          562 TYLDLSNN-LLSGRLPDCWFQFDSLAILNLAN-NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG  639 (1025)
Q Consensus       562 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (1025)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 787 4777 88888999999986 88988888888889999999999999998888888999999999999


Q ss_pred             CCcCccccChhhhhcCCCCcEEEeecCcCccc
Q 047190          640 KNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN  671 (1025)
Q Consensus       640 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~  671 (1025)
                      +|+|+ .+|..++..++ |++|+|.+|++...
T Consensus        89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALE-SLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99998 56666664444 88999999888743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=5.6e-08  Score=110.44  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=45.8

Q ss_pred             CCCCC-CCcEEEeecccccCcccccccccCCcceeeccCcc---cccccchhhhcCCCCCcEEECCCCccccccccCCCC
Q 047190          362 LGGFP-SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS---LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTP  437 (1025)
Q Consensus       362 l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~---l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  437 (1025)
                      |.++. .|+.+.+..+ ++.....+|.++++|+.+.+..|.   ++ .+....|.++.+|+.+.+..+ ++......|..
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            55553 4777777653 554555667777777777776653   33 344555777777766655443 33333333444


Q ss_pred             Ccccceeec
Q 047190          438 PFQLFNIFL  446 (1025)
Q Consensus       438 ~~~L~~L~L  446 (1025)
                      ..+|+.+.+
T Consensus       136 c~~L~~i~l  144 (394)
T 4gt6_A          136 CEELDTVTI  144 (394)
T ss_dssp             CTTCCEEEC
T ss_pred             hcccccccc
Confidence            444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.92  E-value=1e-07  Score=108.34  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             cCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          557 SSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       557 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      .+..|+.+.+.++..+ ....+|.++++|+.+.+. +.++.....+|.++.+|+.+.+..+ ++.+-..+|.+|++|+.+
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            3455555555444332 344455555566665554 3344344445555555555555433 443444455555555555


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN  691 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  691 (1025)
                      .|..+ ++ .|....|.++++|+.+++.++....   ..+....+|+.+.+..|.
T Consensus       340 ~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          340 AIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             EECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            55433 33 4555544455555555555543321   234444555555544443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=5.1e-09  Score=116.39  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             ccceeEEEcccCCCCCcChhhHh---hcccCCeEeccCcccccc----CCCCCCCCCCccEEeCCCCcCCCcCcccccC-
Q 047190          750 LGLIKIIDLSSNKLGGKVLEEIM---DLVGLVALNLSNNNLTGQ----ITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR-  821 (1025)
Q Consensus       750 ~~~l~~LdLs~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-  821 (1025)
                      ++.|+.|+|++|.+++..+..+.   .++.|++|+|+.|.+++.    ++..+..+++|+.|||++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            34557777777777654444443   366777777777777653    3444455677777777777776543333332 


Q ss_pred             CCCCCEEECcCCc
Q 047190          822 LRLLSVMDLSYNN  834 (1025)
Q Consensus       822 l~~L~~Ldls~N~  834 (1025)
                      +  ...+|++.|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  2446666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=1.5e-07  Score=104.61  Aligned_cols=141  Identities=20%  Similarity=0.226  Sum_probs=91.0

Q ss_pred             CchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhh--hcCCCCCCCCCCcEEEccc--ccc
Q 047190          280 SIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQ--NVSSGSTKNSSLEWLYLAF--NEI  355 (1025)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~~~~~~~~L~~L~L~~--n~l  355 (1025)
                      .+...+..+++|+.|+|++|.-..++. +. +++|++|++..+.+.......+.  .++       +|+.|+|+.  |..
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp-------~L~~L~L~~~~~~~  233 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP-------NLEKLVLYVGVEDY  233 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT-------TCCEEEEECBCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC-------CCcEEEEecccccc
Confidence            345667778889999998873223444 33 78899999988887655544444  344       899998863  221


Q ss_pred             ccc--c----CCC--CCCCCCcEEEeecccccCccccccc---ccCCcceeeccCcccccccchhh---hcCCCCCcEEE
Q 047190          356 TGT--I----PDL--GGFPSLQILSLENNRLTGTISKSIG---QLSKLELLLLSGNSLRGVISEAL---FSNLSSLDTLQ  421 (1025)
Q Consensus       356 ~~~--~----p~l--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~  421 (1025)
                      .+.  +    +.+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+......   +.++++|+.|+
T Consensus       234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~  313 (362)
T 2ra8_A          234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN  313 (362)
T ss_dssp             TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred             ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence            111  1    112  3578888888888887754443333   46788888888888775432221   24567888888


Q ss_pred             CCCCcccc
Q 047190          422 LSDNSLTL  429 (1025)
Q Consensus       422 Ls~n~l~~  429 (1025)
                      +++|.++.
T Consensus       314 L~~n~i~d  321 (362)
T 2ra8_A          314 MKYNYLSD  321 (362)
T ss_dssp             CCSBBCCH
T ss_pred             CCCCcCCH
Confidence            88777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.58  E-value=2.5e-06  Score=96.26  Aligned_cols=141  Identities=9%  Similarity=0.107  Sum_probs=94.3

Q ss_pred             CCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEe
Q 047190          558 SHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMD  637 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  637 (1025)
                      +..|+.+.+..+ +......+|.++..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......|.+|++|+.++
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence            455666666544 33345566777777888877655 55455566777777888777543 5545556777888888888


Q ss_pred             CCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCcc
Q 047190          638 LGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFT  704 (1025)
Q Consensus       638 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  704 (1025)
                      +.++.++ .|+...+.++.+|+.+.|..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.++.
T Consensus       293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          293 MDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            8777776 677666667788888888654 55555667778888888877654 5544455665554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.41  E-value=1.7e-05  Score=89.32  Aligned_cols=49  Identities=10%  Similarity=0.151  Sum_probs=31.2

Q ss_pred             cccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCccccccccCCC
Q 047190          385 SIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWT  436 (1025)
Q Consensus       385 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  436 (1025)
                      ++....+|+.+.+... ++ .++..+|.++.+|+.+.+..+ ++......|.
T Consensus        41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~   89 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFA   89 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred             ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhc
Confidence            4556677888887643 33 466667888888888888644 4444344443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=1e-07  Score=100.24  Aligned_cols=62  Identities=26%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             eeEEEcccCCCCC--cChhhHhhcccCCeEeccCccccccCCCCCCCCC--CccEEeCCCCcCCCcCc
Q 047190          753 IKIIDLSSNKLGG--KVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK--SLDFLDLSRNHFFGGIP  816 (1025)
Q Consensus       753 l~~LdLs~N~l~~--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~g~ip  816 (1025)
                      |+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++.+|
T Consensus       172 L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3455555555554  3334445555555555555555543  1222222  45555555555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=7.6e-08  Score=96.42  Aligned_cols=122  Identities=16%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             ccccccCcCCCCCcEEEccCC-CCCCC---CCcccccCcccccccccccccCCCC----cchhccCCCCCCEEecccCCC
Q 047190          102 GTINPSLLKLQHLTYLDLSWN-NFSGS---PIPEFIGSLGKLSELALSSAQFAGP----IPHQLGNLSKLQVLDLRFNNL  173 (1025)
Q Consensus       102 g~l~~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~L~~L~~L~Ls~n~i  173 (1025)
                      ..+...+...+.|++|+|++| .+...   .+...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            344555677888888888888 77642   1334555567777788877777643    334445556677777777765


Q ss_pred             CCCCC---chhcccCCCCCeeec--cCCcCCCC--cchHHhhCCCCCCCEEEcCCCC
Q 047190          174 FSSGN---LDWLSYLSSLRYLDL--ADCKLSKF--SNWVQVLSNLRSLTNLYLGYCD  223 (1025)
Q Consensus       174 ~~~~~---~~~l~~l~~L~~L~L--~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~  223 (1025)
                      ...+.   ...+...++|++|+|  ++|.+...  ..+...+...++|++|++++|.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            22211   233455556666666  55665442  1223334444444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=3e-07  Score=96.69  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=67.4

Q ss_pred             EEcccCCCC---CcChhhHhhcccCCeEeccCccccc--cCCCCCCCCCCccEEeCCCCcCCCcCcccccCCC--CCCEE
Q 047190          756 IDLSSNKLG---GKVLEEIMDLVGLVALNLSNNNLTG--QITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLR--LLSVM  828 (1025)
Q Consensus       756 LdLs~N~l~---~~ip~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~L  828 (1025)
                      ++++.|+..   +.++....+++.|++|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            667777432   3333334678999999999999998  5677788999999999999999986  4455555  99999


Q ss_pred             ECcCCcccccCCC
Q 047190          829 DLSYNNFSGKIPK  841 (1025)
Q Consensus       829 dls~N~l~g~ip~  841 (1025)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.15  E-value=9.2e-07  Score=88.43  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=36.5

Q ss_pred             hhhhCCCCCcEEEccCC-CCCC-----cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccc
Q 047190          283 LAFGHMASLRHLDLLSN-QLRE-----VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT  356 (1025)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n-~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~  356 (1025)
                      ..+...++|++|+|++| .+..     +...+...++|++|+|++|.+.......+...-   ...++|++|+|++|.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L---~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML---KVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH---HHCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH---HhCCCcCEEECcCCcCC
Confidence            34455566666666666 5553     234455566666666666666543322222110   01115566666655554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.87  E-value=5.6e-06  Score=80.51  Aligned_cols=84  Identities=13%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             CCCcEEEccCCCCCCCCCcccccCccccccccccccc-CCCCcchhccCC----CCCCEEecccCCCCCCCCchhcccCC
Q 047190          112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQ-FAGPIPHQLGNL----SKLQVLDLRFNNLFSSGNLDWLSYLS  186 (1025)
Q Consensus       112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~L----~~L~~L~Ls~n~i~~~~~~~~l~~l~  186 (1025)
                      ..|+.||++++.++.. --..+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|.-.+......+..++
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            4577777777766554 22344566666666666663 554444444443    24666666665421222233445555


Q ss_pred             CCCeeeccCC
Q 047190          187 SLRYLDLADC  196 (1025)
Q Consensus       187 ~L~~L~L~~n  196 (1025)
                      +|++|++++|
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=6.7e-06  Score=79.94  Aligned_cols=85  Identities=18%  Similarity=0.263  Sum_probs=59.9

Q ss_pred             ccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccC----CCCCeeeccCCc-CCCCcchHHhhCCC
Q 047190          137 GKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYL----SSLRYLDLADCK-LSKFSNWVQVLSNL  211 (1025)
Q Consensus       137 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~l~~l  211 (1025)
                      .+|++||++++.+++..-..+..+++|++|+|++|...+......++.+    ++|++|+|++|. +++  .....+.++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcC
Confidence            4688888888887766666677888888888888853333344455554    368888888874 665  234566778


Q ss_pred             CCCCEEEcCCCC
Q 047190          212 RSLTNLYLGYCD  223 (1025)
Q Consensus       212 ~~L~~L~L~~n~  223 (1025)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            888888888875

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=96.99  E-value=1.8e-05  Score=74.84  Aligned_cols=68  Identities=10%  Similarity=0.037  Sum_probs=42.9

Q ss_pred             HHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccccc
Q 047190          929 NFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAE  997 (1025)
Q Consensus       929 ~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~  997 (1025)
                      .|..++.+|+ .++++.||+..+.+++|+++|||           ++|++||++|+|+|++|++    ++|++++-..+-
T Consensus        16 Sy~~~D~~~v-~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~----S~wc~~El~~al   90 (146)
T 3ub2_A           16 CHSEEDLVAA-QDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQ----DPWCKYQMLQAL   90 (146)
T ss_dssp             ECCGGGHHHH-HHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHH----CHHHHHHHHHHH
T ss_pred             eCChhhHHHH-HHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECccccc----CHHHHHHHHHHH
Confidence            4445678887 68999999876789999999999           6899999999999999999    777777766655


Q ss_pred             cCCc
Q 047190          998 QNSP 1001 (1025)
Q Consensus       998 ~~~~ 1001 (1025)
                      +..+
T Consensus        91 ~~~~   94 (146)
T 3ub2_A           91 TEAP   94 (146)
T ss_dssp             HTSS
T ss_pred             HHHh
Confidence            5443

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=96.98  E-value=6.2e-06  Score=80.80  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             hHHHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccc
Q 047190          927 YYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVP  995 (1025)
Q Consensus       927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f  995 (1025)
                      |..|..++.+||..++++.||++++.+++|+++||+           ++|++||++|+|+|++|++    ++||+++-..
T Consensus        39 FISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~----S~wc~~El~~  114 (178)
T 2j67_A           39 FISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQ----NEWCHYEFYF  114 (178)
T ss_dssp             EEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHH----HTGGGTHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccc----cchHHHHHHH
Confidence            335556788999999999999877789999999999           6899999999999999999    8888888776


Q ss_pred             cccCC
Q 047190          996 AEQNS 1000 (1025)
Q Consensus       996 ~~~~~ 1000 (1025)
                      +-+..
T Consensus       115 a~~~~  119 (178)
T 2j67_A          115 AHHNL  119 (178)
T ss_dssp             TTCC-
T ss_pred             HHHHH
Confidence            65443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.86  E-value=0.0016  Score=60.16  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             eEeccCcccc-ccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCccccc
Q 047190          779 ALNLSNNNLT-GQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       779 ~L~Ls~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~  838 (1025)
                      .++-+++.|+ ..+|..+.  .+|+.|||++|+|+...+..|..+++|+.|+|++|++.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            4555555554 34454332  3688888888888887777888888888888888888753

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=96.81  E-value=1.9e-05  Score=75.90  Aligned_cols=68  Identities=19%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             hHHHHHhhhheeehh-----------hhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccc-eee
Q 047190          927 YYNFLTRVKDWLYVE-----------AVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKIL-LIR  983 (1025)
Q Consensus       927 ~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~-r~~  983 (1025)
                      |..|..++.+|+.++           +...||+ ++.+++|+++|||           ++|++||++|+|+|++|+ +  
T Consensus         6 FISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~-~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~--   82 (159)
T 1t3g_A            6 YLSYTKVDPDQWNQETGEEERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVR--   82 (159)
T ss_dssp             EEECCCCC-------CCSHHHHHHTHHHHHHHH-TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHT--
T ss_pred             EEeCccccchhhhccchhhHHHHHHHHHHHHcC-CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhc--
Confidence            344555667777643           3345775 6789999999999           689999999999999997 8  


Q ss_pred             eccCCCCCcccccccC
Q 047190          984 TFSNLSPCETVPAEQN  999 (1025)
Q Consensus       984 t~~e~~~~t~~f~~~~  999 (1025)
                        ++|++++-..+-+.
T Consensus        83 --S~wc~~El~~a~~~   96 (159)
T 1t3g_A           83 --RGWSIFELETRLRN   96 (159)
T ss_dssp             --TTTHHHHHSHHHHH
T ss_pred             --ChHHHHHHHHHHHH
Confidence              88888776665443

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=96.78  E-value=1.1e-05  Score=76.90  Aligned_cols=70  Identities=11%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             hHHHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccc
Q 047190          927 YYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVP  995 (1025)
Q Consensus       927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f  995 (1025)
                      |..|..++.+||..++++.||+.++.++.|+++||+           ++|++||++|+|+|++|++    ++|++++-..
T Consensus         9 FiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~----S~wc~~El~~   84 (149)
T 1fyx_A            9 FVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVK----SEWXKYELDF   84 (149)
T ss_dssp             EEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHH----HHTHHHHSCC
T ss_pred             EEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhc----cchHHHHHHH
Confidence            344556777899888999998765689999999998           6899999999999999998    6777777666


Q ss_pred             cccCC
Q 047190          996 AEQNS 1000 (1025)
Q Consensus       996 ~~~~~ 1000 (1025)
                      +-+..
T Consensus        85 a~~~~   89 (149)
T 1fyx_A           85 SHFRL   89 (149)
T ss_dssp             SCCTT
T ss_pred             HHHHH
Confidence            55443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.78  E-value=0.001  Score=65.81  Aligned_cols=34  Identities=24%  Similarity=0.116  Sum_probs=14.4

Q ss_pred             CCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeec
Q 047190          288 MASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSY  321 (1025)
Q Consensus       288 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~  321 (1025)
                      -+.|++|+|++|.|+.     +-+.+..-+.|++|+|++
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            3444444444444442     223333334444555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.67  E-value=0.0007  Score=67.04  Aligned_cols=16  Identities=6%  Similarity=0.254  Sum_probs=7.1

Q ss_pred             CCCCCcEEEccCCCCC
Q 047190          287 HMASLRHLDLLSNQLR  302 (1025)
Q Consensus       287 ~l~~L~~L~Ls~n~l~  302 (1025)
                      .-+.|+.|+|++|.+.
T Consensus        68 ~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           68 NSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TCSCCCEEECTTSCCB
T ss_pred             hCCCcCEEEccCCCCC
Confidence            3344444444444443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=96.28  E-value=5.8e-05  Score=72.65  Aligned_cols=65  Identities=14%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             HhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccc-cchhhhhhhhhccceeeeccCCCCCcccccccC
Q 047190          932 TRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLD-QSKLLLLVYLRKILLIRTFSNLSPCETVPAEQN  999 (1025)
Q Consensus       932 ~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~-~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~~  999 (1025)
                      .++.+|+. ++++.||+.++.++.|++.||+           ++|+ +||++|+|+|++|++    ++|+.++-..+-+.
T Consensus        25 ~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~----S~wc~~El~~a~~~   99 (160)
T 2js7_A           25 PSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQ----SKECDFQTKFALSL   99 (160)
T ss_dssp             GGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHH----SHHHHHHHHHHHHH
T ss_pred             cccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhc----CHHHHHHHHHHHHH
Confidence            45678886 7888998866679999999998           5787 799999999999999    77777776666554


Q ss_pred             Cc
Q 047190         1000 SP 1001 (1025)
Q Consensus      1000 ~~ 1001 (1025)
                      .+
T Consensus       100 ~~  101 (160)
T 2js7_A          100 SP  101 (160)
T ss_dssp             CT
T ss_pred             HH
Confidence            43

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.65  E-value=0.017  Score=53.25  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=15.3

Q ss_pred             ccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcC
Q 047190          633 LTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKF  668 (1025)
Q Consensus       633 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l  668 (1025)
                      |+.|+|++|+|+ .+|...+..+++|++|+|++|.+
T Consensus        33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence            444444444444 34443333444444444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1025
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 95.6 bits (236), Expect = 6e-22
 Identities = 64/276 (23%), Positives = 103/276 (37%), Gaps = 2/276 (0%)

Query: 592 NNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG--LPSFFMNGSQLTLMDLGKNGLSGEIPT 649
           N ++ G + D+ +    + +L L   +L     +PS   N   L  + +G          
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709
                L  L  L +      G IP  L  +  +  LD S N +SG +P    +   +   
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 710 KSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLE 769
                 I      + G    L   +     +       +   L       S  +      
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 770 EIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829
            +              N       ++G  K+L+ LDL  N  +G +P  L++L+ L  ++
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 830 LSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLP 865
           +S+NN  G+IP+G  LQRF  S YA N  LCG PLP
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.7 bits (213), Expect = 6e-19
 Identities = 67/308 (21%), Positives = 117/308 (37%), Gaps = 29/308 (9%)

Query: 35  CLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCC--KWRGVRCSNKTG--HVLGLDLR 90
           C  ++K++LL  K+ L +    LSSW       +CC   W GV C   T    V  LDL 
Sbjct: 3   CNPQDKQALLQIKKDLGN-PTTLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 91  ASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFA 150
             +          I  SL  L +L +L +   N    PIP  I  L +L  L ++    +
Sbjct: 59  GLNLP----KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 151 GPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLS----KFSNWVQ 206
           G IP  L  +  L  LD  +N   S      +S L +L  +     ++S           
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 207 VLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID------------LSNNYLTNS 254
            L    +++   L     P  +  +L  ++ S+++   D              +    + 
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 255 IYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSL 314
            +       S  ++ +DL +N+++G++P     +  L  L++  N L       GN+   
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 315 KRLVFSYN 322
               ++ N
Sbjct: 294 DVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 8e-15
 Identities = 49/264 (18%), Positives = 87/264 (32%), Gaps = 4/264 (1%)

Query: 363 GGFPSLQILSLENNRLTG--TISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTL 420
                +  L L    L     I  S+  L  L  L + G +          + L+ L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 421 QLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVP 480
            ++  +++       +    L  +      +    P  + S    V +      IS  +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 481 DWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLN 540
           D +   +     + +S N + GK+P      +     +  +  + D  +       +   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 541 LSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP 600
                          +S +L    DL NN + G LP    Q   L  LN++ N+  GEIP
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 601 DSMSFLRSIGSLSLYNNSLSGGLP 624
              + L+     +  NN    G P
Sbjct: 286 QGGN-LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 5/264 (1%)

Query: 385 SIGQLSKLELLLLSGNSLRGVIS-EALFSNLSSLDTLQLSDN-SLTLKFSHDWTPPFQLF 442
           +  Q  ++  L LSG +L       +  +NL  L+ L +    +L            QL 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 443 NIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG 502
            +++    +    P +L      V LD S   +S  +P     L N +       N + G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISG 163

Query: 503 KLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLT 562
            +PD    F      + +S N+  G IP    N++   +  ++            S   T
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGG 622
                                +L  L+L NN  +G +P  ++ L+ + SL++  N+L G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 623 LPSFFMNGSQLTLMDLGKN-GLSG 645
           +P    N  +  +     N  L G
Sbjct: 284 IPQGG-NLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFN 171
           ++L  LDL  N   G+ +P+ +  L  L  L +S     G IP Q GNL +  V     N
Sbjct: 244 KNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 172 NLFSSGNL 179
                  L
Sbjct: 302 KCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 5e-18
 Identities = 74/373 (19%), Positives = 124/373 (33%), Gaps = 34/373 (9%)

Query: 348 LYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVIS 407
             L    +T T+        +  L  +   +       +  L+ L  +  S N L  +  
Sbjct: 27  TVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP 83

Query: 408 EALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQ----- 462
                NL+ L  + +++N +                +F                      
Sbjct: 84  ---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 463 -NQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYG-----P 516
            N    +   +   S     +   +T+     NL+  E      +               
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 517 GIDVSSNQFDGPIPL-LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRL 575
            +  ++NQ     PL +  N+  L+L+ N+    I  L S+++  LT LDL+NN +S   
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTN--LTDLDLANNQISNLA 257

Query: 576 PDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTL 635
           P        L  L L  N      P  ++ L ++ +L L  N L    P   +    LT 
Sbjct: 258 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLK--NLTY 311

Query: 636 MDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI 695
           + L  N +S   P     SL  L  L   +NK        L  L++I  L    N IS +
Sbjct: 312 LTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 696 IPKCFHNFTAMTK 708
            P    N T +T+
Sbjct: 367 TP--LANLTRITQ 377

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 2e-17
 Identities = 62/359 (17%), Positives = 115/359 (32%), Gaps = 52/359 (14%)

Query: 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQV 165
            S   L  +T L             + +  L  L+++  S+ Q     P  L NL+KL  
Sbjct: 38  VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLP 225
           + +  N +     L  L+ L+ L   +     +    N   +     S   +        
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 226 PISTPSLLHINYSKSLEVIDL-----SNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGS 280
             S   L   N    L+ +         +  +N +           ++ +   +NQ+   
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 281 IPLAFGHMASLRHLDLLSNQLREVPKF---------------------LGNMSSLKRLVF 319
            P   G + +L  L L  NQL+++                        L  ++ L  L  
Sbjct: 213 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 270

Query: 320 SYNELRGELSEF-------------IQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFP 366
             N++                         S  +   +L +L L FN I+   P +    
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLT 329

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
            LQ L   NN+++     S+  L+ +  L    N +  +      +NL+ +  L L+D 
Sbjct: 330 KLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.8 bits (185), Expect = 5e-15
 Identities = 76/445 (17%), Positives = 148/445 (33%), Gaps = 73/445 (16%)

Query: 127 SPIPEFI--GSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY 184
           +PI +     +L +  +  L        +     +L ++  L      + S   +D + Y
Sbjct: 10  TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS---IDGVEY 64

Query: 185 LSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVI 244
           L++L  ++ ++ +L+  +     L NL  L ++ +    +  I+  + L           
Sbjct: 65  LNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLT---------- 110

Query: 245 DLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV 304
              N          + ++                 +I              L        
Sbjct: 111 ---NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD 167

Query: 305 PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGG 364
            K L N+++L+RL  S N           +  S   K ++LE L    N+I+   P  G 
Sbjct: 168 LKPLANLTTLERLDISSN---------KVSDISVLAKLTNLESLIATNNQISDITPL-GI 217

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
             +L  LSL  N+L      ++  L+ L  L L+ N +  +      S L+ L  L+L  
Sbjct: 218 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGA 272

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFW 484
           N ++               +     +        + +      L +    ISDI P    
Sbjct: 273 NQISNISPLAGLTALTNLEL----NENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 485 DLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKN 544
            LT  L  L  +NN++   +  L+                          N++ L+   N
Sbjct: 327 SLTK-LQRLFFANNKVSD-VSSLAN-----------------------LTNINWLSAGHN 361

Query: 545 KFSGSISFLCSISSHLLTYLDLSNN 569
           + S     L +++   +T L L++ 
Sbjct: 362 QISDLTP-LANLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 75/455 (16%), Positives = 135/455 (29%), Gaps = 83/455 (18%)

Query: 355 ITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
           I     D           L    +T T+S++   L ++  L      ++ +        L
Sbjct: 12  INQIFTD-TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG---VEYL 65

Query: 415 SSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAG 474
           ++L  +  S+N LT     D TP   L  +                +         +  G
Sbjct: 66  NNLTQINFSNNQLT-----DITPLKNLTKLVDILMNNNQIADITPLANLT------NLTG 114

Query: 475 ISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPP 534
           ++            +              + D+S              NQ     PL   
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL--A 172

Query: 535 NVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNS 594
           N+++L       +             L  L  +NN +S   P       +L  L+L  N 
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQ 230

Query: 595 FFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGES 654
                  +++ L ++  L L NN +S   P      ++LT + LG N +S   P      
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---G 283

Query: 655 LPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNL 714
           L  L  L L  N+     P     L ++  L L  NNIS I P    + T          
Sbjct: 284 LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTK--------- 330

Query: 715 SIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDL 774
                                                 ++ +  ++NK+    +  + +L
Sbjct: 331 --------------------------------------LQRLFFANNKVSD--VSSLANL 350

Query: 775 VGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN 809
             +  L+  +N ++      +  L  +  L L+  
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 9e-13
 Identities = 74/426 (17%), Positives = 136/426 (31%), Gaps = 53/426 (12%)

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHI--DLGSNQLHGSIPLAFGHMASLRHLDLLSNQLRE 303
           ++ +   N I+       + L + +   LG   +  ++      +  +  L      ++ 
Sbjct: 6   ITQDTPINQIFT-----DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS 58

Query: 304 VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLG 363
           +   +  +++L ++ FS N+L            +  T   +L  L               
Sbjct: 59  I-DGVEYLNNLTQINFSNNQL------------TDITPLKNLTKLVDILMNNNQIADITP 105

Query: 364 GFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLS 423
                 +  L       T    +  L+ L  L LS N++  + + +  ++L  L      
Sbjct: 106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 165

Query: 424 DNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWF 483
            +   L             N               L       +L  +N  ISDI P   
Sbjct: 166 TDLKPLANLTTLERLDISSNKV--------SDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 484 WDLTNQLYYLNLSNNEMKG--KLPDLSRKFDSYGPGIDVSSNQFDGPIPL-LPPNVSSLN 540
                 L  L+L+ N++K    L  L+   D     +D+++NQ     PL     ++ L 
Sbjct: 218 L---TNLDELSLNGNQLKDIGTLASLTNLTD-----LDLANNQISNLAPLSGLTKLTELK 269

Query: 541 LSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP 600
           L  N+ S          + L    +L  N              +L  L L  N+     P
Sbjct: 270 LGANQISNISPL-----AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 601 DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVV 660
             +S L  +  L   NN +S    S   N + +  +  G N +S   P     +L  +  
Sbjct: 325 --VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQ 377

Query: 661 LSLRSN 666
           L L   
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 2e-11
 Identities = 68/373 (18%), Positives = 113/373 (30%), Gaps = 53/373 (14%)

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
           L     GI  I  D    L N L  +N SNN++    P       +    +D+  N    
Sbjct: 49  LQADRLGIKSI--DGVEYLNN-LTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQI 100

Query: 528 PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAI 587
                  N+++L       +         +   L  L+LS+N +S               
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 588 LNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEI 647
                         +      I S  + + S+   L +          +    N +S   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES-------LIATNNQISDIT 213

Query: 648 PTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMT 707
           P  I     NL  LSL  N+        L  L+++  LDL+ N IS + P          
Sbjct: 214 PLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL------ 262

Query: 708 KEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKV 767
               + L+ +      +     L  L      +  + + + I                  
Sbjct: 263 ----TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI------------------ 300

Query: 768 LEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSV 827
              I +L  L  L L  NN++      +  L  L  L  + N       SSL+ L  ++ 
Sbjct: 301 -SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 828 MDLSYNNFSGKIP 840
           +   +N  S   P
Sbjct: 356 LSAGHNQISDLTP 368

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 3e-16
 Identities = 46/281 (16%), Positives = 89/281 (31%), Gaps = 30/281 (10%)

Query: 112 QHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFN 171
                LDL  N  +         +L  L  L L + + +   P     L KL+ L L  N
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 172 NL--------------------FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNL 211
            L                     +       + L+ +  ++L    L            +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 212 RSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
           + L+ + +   ++  I            SL  + L  N +T      L  +  N +  + 
Sbjct: 150 KKLSYIRIADTNITTIPQGLP------PSLTELHLDGNKITKVDAASLKGL--NNLAKLG 201

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEF 331
           L  N +      +  +   LR L L +N+L +VP  L +   ++ +    N +   +   
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSN 260

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILS 372
                  +TK +S   + L  N +         F  + + +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 13/278 (4%)

Query: 561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLS 620
              LDL NN ++      +    +L  L L NN      P + + L  +  L L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 621 GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS 680
                      +L + +     +   +   +  +   +V L     K  G        + 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 681 HIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWK 740
            +  + ++  NI+ I      + T +  + +    + +     L     L     F++  
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL--SFNSIS 208

Query: 741 GGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTG------QITPR 794
                  +    ++ + L++NKL  KV   + D   +  + L NNN++            
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 795 IGQLKSLDFLDLSRNH--FFGGIPSSLSRLRLLSVMDL 830
             +  S   + L  N   ++   PS+   + + + + L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 8e-14
 Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 23/272 (8%)

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYC 222
             +LDL+ N + +         L +L  L L + K+SK S      + L  L  LYL   
Sbjct: 33  TALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISP--GAFAPLVKLERLYLSKN 89

Query: 223 DLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIP 282
            L  +  P  +     +    + +  N +T         ++  +V  +     +  G   
Sbjct: 90  QLKEL--PEKMPKTLQE----LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 283 LAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN 342
            AF  M  L ++ +    +  +P+  G   SL  L    N++    +  ++         
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKG-------L 194

Query: 343 SSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSL 402
           ++L  L L+FN I+                  NN     +   +     ++++ L  N++
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 403 RGVISEA-----LFSNLSSLDTLQLSDNSLTL 429
             + S         +  +S   + L  N +  
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 8e-14
 Identities = 51/264 (19%), Positives = 90/264 (34%), Gaps = 18/264 (6%)

Query: 366 PSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDN 425
           P   +L L+NN++T         L  L  L+L  N +  +   A F+ L  L+ L LS N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKN 89

Query: 426 SLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWD 485
            L            +L        K+       L +Q   V L  +    S I    F  
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQG 148

Query: 486 LTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPN---VSSLNLS 542
           +   L Y+ +++  +      L          + +  N+              ++ L LS
Sbjct: 149 MKK-LSYIRIADTNITTIPQGLPPSLTE----LHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 543 KNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG----- 597
            N  S   +   + + HL      +N L   ++P        + ++ L NN+        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 598 -EIPDSMSFLRSIGSLSLYNNSLS 620
              P   +   S   +SL++N + 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 7e-11
 Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 7/240 (2%)

Query: 598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN 657
           ++P  +        L L NN ++      F N   L  + L  N +S   P      L  
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVK 80

Query: 658 LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSII 717
           L  L L  N+    +P ++     +Q L +  N I+ +    F+    M   +     + 
Sbjct: 81  LERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 718 SNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGL 777
           S+   N   +GM                 + +   +  + L  NK+       +  L  L
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 778 VALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG 837
             L LS N+++      +     L  L L+ N+    +P  L+  + + V+ L  NN S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 4/217 (1%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
               L+DL  N ++         +L NL  L L +NK     P     L  ++ L LS N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
            +  +  K       +   ++    +  + +  L    ++          G +      +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH 810
             +  I ++   +             L  L+L  N +T      +  L +L  L LS N 
Sbjct: 150 KKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 811 FFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQR 847
                  SL+    L  + L+ N            + 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 5e-09
 Identities = 44/238 (18%), Positives = 76/238 (31%), Gaps = 7/238 (2%)

Query: 632 QLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691
            L ++     GL  ++P  +    P+  +L L++NK           L ++  L L  N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 692 ISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILG 751
           IS I P  F     + +   S   +             L       T             
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811
           ++  +  +  K  G        +  L  + +++ N+T   T   G   SL  L L  N  
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKI 183

Query: 812 FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCL 869
                +SL  L  L+ + LS+N+ S                +  N +L  +P      
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 52/285 (18%), Positives = 85/285 (29%), Gaps = 8/285 (2%)

Query: 554 CSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLS 613
           C   +            L   +P       +   + L  N        S    R++  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 614 LYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIP 673
           L++N L+    + F   + L  +DL  N     +       L  L  L L         P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 674 FQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTK-EKSSNLSIISNYYYNLGLRGMLMP 732
                L+ +Q L L  N +  +    F +   +T      N           GL  +   
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 733 LIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT 792
           L+  +            LG +  + L +N L     E +  L  L  L L++N       
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

Query: 793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSG 837
            R      L     S +     +P  L+   L     L+ N+  G
Sbjct: 243 AR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 39/267 (14%), Positives = 70/267 (26%), Gaps = 30/267 (11%)

Query: 461 SQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDS--YGPGI 518
                V       G+  +              + L  N +        R   +       
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIPAASQ----RIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 519 DVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDC 578
                + D         +  L+LS N    S+          L  L L    L    P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 579 WFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL 638
           +    +L  L L +N+      D+   L ++  L L+ N +S      F     L  + L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 639 GKNGLSGEIPTWI-----------------------GESLPNLVVLSLRSNKFHGNIPFQ 675
            +N ++   P                             L  L  L L  N +  +   +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 676 LCYLSHIQILDLSLNNISGIIPKCFHN 702
               + +Q    S + +   +P+    
Sbjct: 245 P-LWAWLQKFRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 49/258 (18%), Positives = 82/258 (31%), Gaps = 9/258 (3%)

Query: 343 SSLEWLYLAFNEITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           ++ + ++L  N I+           +L IL L +N L    + +   L+ LE L LS N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 402 LRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQS 461
               +  A F  L  L TL L    L       +     L  ++L    +        + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 462 QNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVS 521
                 L +    IS +    F  L + L  L L  N +    P   R           +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 522 SNQ--FDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCW 579
           +N              +  L L+ N +          +   L     S++ +   LP   
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQ-- 266

Query: 580 FQFDSLAILNLANNSFFG 597
            +     +  LA N   G
Sbjct: 267 -RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 28/275 (10%)

Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLD 295
               + + I L  N ++  +    F    NL       +           G     +   
Sbjct: 29  GIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 296 LLSNQLREV-PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNE 354
             + QLR V P     +  L  L               +         ++L++LYL  N 
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRC-------GLQELGPGLFRGLAALQYLYLQDNA 140

Query: 355 ITGTIPD-LGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
           +     D      +L  L L  NR++    ++   L  L+ LLL  N +  V   A F +
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRD 199

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQL------FNIFLGSCKIGPRFPKWLQSQNQTVA 467
           L  L TL L  N+L+   +    P   L       N ++  C+  P    WLQ       
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQK------ 252

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKG 502
              S++ +   +P              L+ N+++G
Sbjct: 253 FRGSSSEVPCSLPQRLAGRD----LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 30/163 (18%), Positives = 46/163 (28%), Gaps = 2/163 (1%)

Query: 680 SHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTW 739
           +  Q + L  N IS +    F     +T     +  +            +L  L   D  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 740 KGGQYE--YKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQ 797
           +    +      LG +  + L    L          L  L  L L +N L          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 798 LKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 840
           L +L  L L  N        +   L  L  + L  N  +   P
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 45/248 (18%), Positives = 77/248 (31%), Gaps = 32/248 (12%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
               + L  N  S  P      +   L+ L L S   A         L+ L+ LDL  N 
Sbjct: 33  ASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
              S +      L  L  L L  C          +   L +L  LYL    L  +   + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAF------- 285
                  +L  + L  N +++        + S  +D + L  N++    P AF       
Sbjct: 150 ---RDLGNLTHLFLHGNRISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 286 -----------------GHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL 328
                              + +L++L L  N      +     + L++   S +E+   L
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 329 SEFIQNVS 336
            + +    
Sbjct: 265 PQRLAGRD 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 36/217 (16%), Positives = 72/217 (33%), Gaps = 3/217 (1%)

Query: 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLS 161
                       + ++DLS +    S +   +    KL  L+L   + + PI + L   S
Sbjct: 36  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95

Query: 162 KLQVLDLRFN-NLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSN-LRSLTNLYL 219
            L  L+L              LS  S L  L+L+ C      +    +++   ++T L L
Sbjct: 96  NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155

Query: 220 GYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG 279
                    +     +    +L  +DLS++ +  +     F   + L          +  
Sbjct: 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 215

Query: 280 SIPLAFGHMASLRHLDLLSN-QLREVPKFLGNMSSLK 315
              L  G + +L+ L +        +      +  L+
Sbjct: 216 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 36/271 (13%), Positives = 83/271 (30%), Gaps = 16/271 (5%)

Query: 588 LNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEI 647
           L+L   +   ++   +   + + +     + +   L   F +  ++  MDL  + +    
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 648 PTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFH------ 701
              I      L  LSL   +    I   L   S++  L+LS  +                
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 702 ----NFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIID 757
               N +        ++ +   +      +  L                +    L+ +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 758 LSSNKLGGKVLEEIMDLVGLVALNLSN-NNLTGQITPRIGQLKSLDFLDLSRNHFFGGIP 816
             S  L     +E   L  L  L+LS   ++  +    +G++ +L  L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 817 SSLSRLRLLSVMDLSYNNFSGKIPKGTQLQR 847
                L  L    ++ ++F+         ++
Sbjct: 243 LLKEALPHL---QINCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 752 LIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811
           L + +DL+   L   V   ++   G++A     + +  Q          +  +DLS +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVI 58

Query: 812 -FGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 841
               +   LS+   L  + L     S  I  
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 33/212 (15%), Positives = 55/212 (25%), Gaps = 15/212 (7%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNL 173
              ++    N +   +P  +      + L LS           L   ++L  L+L    L
Sbjct: 12  HLEVNCDKRNLTA--LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 174 FSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLL 233
                   L  L +L         L      +             L   D+      SL 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----------ALTVLDVSFNRLTSLP 116

Query: 234 HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRH 293
                   E+ +L          P      +  ++ + L +N L          + +L  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 294 LDLLSNQLREVPKFLGNMSSLKRLVFSYNELR 325
           L L  N L  +PK       L       N   
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 7/205 (3%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
           +    ++  K  L+  +P  +     +  +L L  N  +      L   + +  L+L   
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-- 63

Query: 691 NISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSIL 750
                  +       +     S+  + S       L  + +  + F+            L
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 751 GLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNH 810
           G ++ + L  N+L       +     L  L+L+NNNLT      +  L++LD L L  N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 811 FFGGIPSSLSRLRLLSVMDLSYNNF 835
            +  IP       LL    L  N +
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 7/210 (3%)

Query: 602 SMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVL 661
            +S + S   ++    +L+  LP         T++ L +N L       +      L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLM-PYTRLTQL 60

Query: 662 SLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYY 721
           +L   +           L  +  LDLS N +  +             + S N        
Sbjct: 61  NLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALN 781
              GL  +    +  +  K       +    ++ + L++N L       +  L  L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 782 LSNNNLTGQITPRIGQLKSLDFLDLSRNHF 811
           L  N+L   I         L F  L  N +
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 36/193 (18%), Positives = 55/193 (28%), Gaps = 16/193 (8%)

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
                L L++  L  FS     L     LT L L   +L  +     L +  +  L    
Sbjct: 31  KDTTILHLSENLLYTFSL--ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP 305
           L +  L     P L  +  +      L    L G   L   ++       L        P
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-------PP 141

Query: 306 KFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGF 365
             L     L++L  + N L    +  +           +L+ L L  N +        G 
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNG-------LENLDTLLLQENSLYTIPKGFFGS 194

Query: 366 PSLQILSLENNRL 378
             L    L  N  
Sbjct: 195 HLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 35/181 (19%), Positives = 55/181 (30%), Gaps = 2/181 (1%)

Query: 680 SHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTW 739
               IL LS N +          +T +T+       +            +L  L      
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQ 88

Query: 740 KGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLK 799
                     L  + ++D+S N+L    L  +  L  L  L L  N L       +    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 800 SLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 859
            L+ L L+ N+        L+ L  L  + L  N+                +   GNP L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

Query: 860 C 860
           C
Sbjct: 209 C 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 770 EIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMD 829
           E+  +   + +N    NLT  + P +   K    L LS N  +    ++L     L+ ++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 830 LSYNNF 835
           L     
Sbjct: 62  LDRAEL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 25/184 (13%), Positives = 46/184 (25%), Gaps = 8/184 (4%)

Query: 365 FPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
                IL L  N L      ++   ++L  L L    L  +  +     L +LD      
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 425 NSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFW 484
            SL L             +      ++       L+   +   L +    +  + P    
Sbjct: 90  QSLPLLGQTLPALTVLDVSF----NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 485 DLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLL--PPNVSSLNLS 542
                      +NN    +LP            + +  N              +    L 
Sbjct: 146 PTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 543 KNKF 546
            N +
Sbjct: 204 GNPW 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 5/178 (2%)

Query: 514 YGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSG 573
            G  +D +          +P + + L L+ N+     S         L  L+L  N L+G
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 574 RLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQL 633
             P+ +     +  L L  N            L  + +L+LY+N +S  +P  F + + L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNN 691
           T ++L  N  +                 SL         P +   +  +QI DL  + 
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAPSK---VRDVQIKDLPHSE 181

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
           T+   L +L  +T+LDLS N      +P  + +L  L  L  S             NL +
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVA--NLPR 66

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWV-QVLSNLRSLTNL 217
           LQ L L  N L  S  +  L     L  L+L    L +      ++   L S++++
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 270 IDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELS 329
           + L    L  ++      +  + HLDL  N+LR +P  L  +  L+ L  S         
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-------- 52

Query: 330 EFIQNVSSGSTKNSSLEWLYLAFNEITG--TIPDLGGFPSLQILSLENNRLT---GTISK 384
                   G      L+ L L  N +     I  L   P L +L+L+ N L    G   +
Sbjct: 53  -NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 385 SIGQLSKLELLL 396
               L  +  +L
Sbjct: 112 LAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 13/132 (9%)

Query: 292 RHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351
           R L L    L  +   L  +  +  L  S+N LR                      +  A
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRC---------LEVLQA 50

Query: 352 FNEITGTIPDLGGFPSLQILSLENNRLTGTIS-KSIGQLSKLELLLLSGNSLRGV--ISE 408
            +     +  +   P LQ L L NNRL  + + + +    +L LL L GNSL     I E
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 409 ALFSNLSSLDTL 420
            L   L S+ ++
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 15/134 (11%)

Query: 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCD 223
           +VL L   +L     L  L  L  + +LDL+  +L      +  L  L  L        +
Sbjct: 1   RVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 224 LPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH---GS 280
           +          +     L+ + L NN L  S           LV  ++L  N L    G 
Sbjct: 58  VDG--------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQGNSLCQEEGI 108

Query: 281 IPLAFGHMASLRHL 294
                  + S+  +
Sbjct: 109 QERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 24/103 (23%)

Query: 348 LYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKL--------------- 392
           L+LA  ++T  +  L     +  L L +NRL      ++  L  L               
Sbjct: 3   LHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 60

Query: 393 -------ELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLT 428
                  + LLL  N L+   +     +   L  L L  NSL 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDF---------- 803
           +++ L+   L   VL  +  L+ +  L+LS+N L     P +  L+ L+           
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 57

Query: 804 ------------LDLSRNHFFGG-IPSSLSRLRLLSVMDLSYNNFSGK 838
                       L L  N          L     L +++L  N+   +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
           L +++  ++ +       L   + +L+LS+N ++   P L+            ++ +   
Sbjct: 3   LHLAHKDLTVL--CHLEQLLL-VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 528 PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSG 573
            +    P +  L L  N+   S +    +S   L  L+L  N L  
Sbjct: 60  GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 50/319 (15%), Positives = 98/319 (30%), Gaps = 23/319 (7%)

Query: 113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNN 172
               L+L+    S   +PE    L     L  S       +P    +L  L V +     
Sbjct: 39  QAHELELNNLGLSS--LPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 173 LFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSL 232
           L     L     +S+ +   L + + S F   +          +L       P +   + 
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID-----VDNNSLKKLPDLPPSLEFIAA 147

Query: 233 LHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLR 292
            +    +  E+ +L       +    L  +    +    + +            ++  L 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 293 HLDLLSNQLREVPKFLGNMSSLK---RLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
            +   +N L+ +P    ++ +L      +    EL   L+    + +  S  +     LY
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEA 409
                           PSL+ L++ NN+L   +     +L +L     S N L       
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHL-----AE 318

Query: 410 LFSNLSSLDTLQLSDNSLT 428
           +     +L  L +  N L 
Sbjct: 319 VPELPQNLKQLHVEYNPLR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 203 NWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNV 262
             +Q L  L ++         LP +             L  +      LT          
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 263 SSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYN 322
             + +       N     I        SL  L++ +N+L E+P        L+RL+ S+N
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFN 314

Query: 323 ELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLEN 375
            L  E+ E  QN          L+ L++ +N +    PD+    S++ L + +
Sbjct: 315 HL-AEVPELPQN----------LKQLHVEYNPLR-EFPDI--PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 58/325 (17%), Positives = 103/325 (31%), Gaps = 20/325 (6%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
               L+L +  L  +P+   +   L+ LV S N L  EL E  Q++ S    N++L+ L 
Sbjct: 39  QAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEA 409
                +            L  L   +      +  +  +        L   +      E 
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 410 LFS--NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVA 467
           L    NL  L  +   +NSL        +    +    +       +   +L +      
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 468 LDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDG 527
           L  +   +   +               L  +     + +      S  P      N    
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 528 ---PIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDS 584
               +  LPP++  LN+S NK     +         L  L  S N L+  +P+      +
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPALPPR-----LERLIASFNHLA-EVPEL---PQN 325

Query: 585 LAILNLANNSF--FGEIPDSMSFLR 607
           L  L++  N    F +IP+S+  LR
Sbjct: 326 LKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 53/328 (16%), Positives = 96/328 (29%), Gaps = 26/328 (7%)

Query: 342 NSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNS 401
           +     L L    ++ ++P+L   P L+ L    N LT  + +    L  L +   +  +
Sbjct: 37  DRQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 402 LRGVISEALFSNLSS-----------LDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCK 450
           L  +     +  +S+              L++ D            PP   F     +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 451 IGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRK 510
                 + L       A + S   + D+       +        L   +    L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 511 FDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNL 570
            +      D+  +     +           L ++     +S         L       N 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 571 LSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNG 630
            S  +        SL  LN++NN    E+P     L     L    N L+  +P    N 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFNHLA-EVPELPQN- 325

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNL 658
             L  + +  N L  E P    ES+ +L
Sbjct: 326 --LKQLHVEYNPLR-EFPDIP-ESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 51/331 (15%), Positives = 94/331 (28%), Gaps = 26/331 (7%)

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGEL 328
            ++L +  L  S+P    H   L  L    N L E+P+   ++ SL     +   L    
Sbjct: 42  ELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 329 SEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQ 388
                   S +      E    +F +I           SL+ L      L    + +   
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDV-----DNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 389 LSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGS 448
               EL  L   +     + +L        +L+       +                   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 449 CKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLS 508
             +    P    S       D     + ++     +   ++  +  LS         + S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 509 RKFDSYGPG-------IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLL 561
                           ++VS+N+    +P LPP +  L  S N  +       +     L
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPELPQN-----L 326

Query: 562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLAN 592
             L +  N L    PD     +S+  L + +
Sbjct: 327 KQLHVEYNPLRE-FPDI---PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 55/317 (17%), Positives = 90/317 (28%), Gaps = 25/317 (7%)

Query: 532 LPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPD--CWFQFDSLAILN 589
           L      L L+       +S L  +  HL   L  S N L+  LP+     +   +   N
Sbjct: 36  LDRQAHELELNNLG----LSSLPELPPHL-ESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 590 LANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPT 649
           L   S    + + +    +         + S        N S   L DL  +        
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 650 WIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE 709
              E LP L  L   +  +  N   +      + +  +   N          N   +T  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 710 KSSNLSIISN---------YYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSS 760
            + N  + +                    L  L    T+        S L  +       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 761 NKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLS 820
           N    ++         L  LN+SNN L  ++     +L+    L  S NH    +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNH-LAEVPELPQ 324

Query: 821 RLRLLSVMDLSYNNFSG 837
            L+ L    + YN    
Sbjct: 325 NLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 50/329 (15%), Positives = 93/329 (28%), Gaps = 28/329 (8%)

Query: 367 SLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS 426
               L L N  L+ ++ +    L  L     S NSL       L     SL +L + +N+
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESLVA---SCNSL-----TELPELPQSLKSLLVDNNN 89

Query: 427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIVPDWFWDL 486
           L        +    L      S     + P+   S    +  DV N  +  +        
Sbjct: 90  L-----KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKII-DVDNNSLKKLPDLPPSLE 143

Query: 487 TNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNLSKNKF 546
                   L        LP L+  +        +                 +  L +   
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE----SIVAGNNILEELPE 199

Query: 547 SGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFL 606
             ++ FL +I +       L +   S    +    + +       + +F     +  S L
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 607 RSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSN 666
             +     Y N+ S  + S       L  +++  N L       +    P L  L    N
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFN 314

Query: 667 KFHGNIPFQLCYLSHIQILDLSLNNISGI 695
                +P       +++ L +  N +   
Sbjct: 315 HL-AEVPEL---PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 9e-05
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 121 WNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLD 180
           + N S + I         L EL +S+ +    +P     L   + L   FN+L     L 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLAEVPEL- 322

Query: 181 WLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR 212
                 +L+ L +    L +F +  + + +LR
Sbjct: 323 ----PQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 28/314 (8%)

Query: 111 LQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRF 170
             HL  L  S N+   + +PE   SL  L     +    +   P           L+   
Sbjct: 57  PPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPL----------LEYLG 104

Query: 171 NNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTP 230
            +      L  L   S L+ +D+ +  L K  +    L  + +  N      +L  +   
Sbjct: 105 VSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFL 164

Query: 231 SLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMAS 290
           + ++ + +   ++ DL  +  +      +      L +   L +     ++      +  
Sbjct: 165 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP 224

Query: 291 LRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKN-------S 343
                 + +        L    +   +  +      EL   +  +++ S +         
Sbjct: 225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284

Query: 344 SLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLR 403
           SLE L ++ N++   +P L   P L+ L    N L   + +    L +L    +  N LR
Sbjct: 285 SLEELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELPQNLKQLH---VEYNPLR 337

Query: 404 GVISEALFSNLSSL 417
                 +  ++  L
Sbjct: 338 EF--PDIPESVEDL 349

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 38/251 (15%), Positives = 84/251 (33%), Gaps = 33/251 (13%)

Query: 127 SPIPEFI--GSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY 184
           + I       +L    ++A   +     +     +L  +  L      + +   ++ + Y
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT---IEGVQY 61

Query: 185 LSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVI 244
           L++L  L+L D +++  +         ++LT +        P+   S +    S     +
Sbjct: 62  LNNLIGLELKDNQITDLAPL-------KNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 245 DLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREV 304
             +       +          L  +     + L G   L +  + + +  D         
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--------- 165

Query: 305 PKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGG 364
              L N+S L  L    N++   +S              +L  ++L  N+I+   P L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISD-ISPL--------ASLPNLIEVHLKNNQISDVSP-LAN 215

Query: 365 FPSLQILSLEN 375
             +L I++L N
Sbjct: 216 TSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 22/227 (9%)

Query: 355 ITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNL 414
           I    PD     +   ++   + +T T++++   L  +  L   G  +  +        L
Sbjct: 9   INVIFPD-PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG---VQYL 62

Query: 415 SSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAG 474
           ++L  L+L DN +T               +     K           +   +        
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 475 ISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDV------------SS 522
                      L   L  +   +              ++    +                
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 523 NQFDGPIPLLP-PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
           N+     PL   PN+  ++L  N+ S  +S L + S+  L  + L+N
Sbjct: 183 NKISDISPLASLPNLIEVHLKNNQISD-VSPLANTSN--LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 27/221 (12%), Positives = 61/221 (27%), Gaps = 17/221 (7%)

Query: 210 NLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTN----SIYPWL--FNVS 263
            L +   +  G  ++    T + L       +  +      +T          L    + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL-----DGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71

Query: 264 SNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNE 323
            N +  +    N L     L            +   Q  +         +    +   + 
Sbjct: 72  DNQITDLAPLKN-LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 324 LRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTIS 383
           L+    +  Q  +       +        N     +  L     L  L  ++N+++    
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 384 KSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSD 424
             +  L  L  + L  N +  V      +N S+L  + L++
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 24/211 (11%)

Query: 612 LSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGN 671
           ++   ++++  +     +   +T +     G++  I     + L NL+ L L+ N+    
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKDNQITDL 78

Query: 672 IPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKE----------KSSNLSIISNYY 721
            P +         L  +       I       T                 SNL ++    
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGL-----IKIIDLSSNKLGGKVLEEIMDLVG 776
             +     L  L        G  +   +  L     +  +    NK+    +  +  L  
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPN 196

Query: 777 LVALNLSNNNLTGQITPRIGQLKSLDFLDLS 807
           L+ ++L NN ++      +    +L  + L+
Sbjct: 197 LIEVHLKNNQISD--VSPLANTSNLFIVTLT 225

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 8e-07
 Identities = 48/471 (10%), Positives = 124/471 (26%), Gaps = 37/471 (7%)

Query: 367 SLQILSLENNRLTGT-ISKSIGQLSKLELLLLSGNSLRGVISEAL---FSNLSSLDTLQL 422
            +Q L ++   L+    ++ +  L + +++ L    L     + +        +L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 423 SDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVA-LDVSNAGISDIVPD 481
             N L                             + LQ+ +  +  L + N  ++     
Sbjct: 63  RSNELG--------------------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 482 WFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSLNL 541
                   L  L   +                   G+     + +          ++   
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDA---GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159

Query: 542 SKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPD 601
                  +      ++       +    +L   L D   Q ++L + +    S       
Sbjct: 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 219

Query: 602 SMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVL 661
            +   ++        ++  G +    +    L      +     E             VL
Sbjct: 220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 279

Query: 662 SLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYY 721
             + +    ++          ++L  +L      +   +    + T    S+ S +    
Sbjct: 280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 339

Query: 722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVG----L 777
             L    +    +     +           +++++ L+   +       +   +     L
Sbjct: 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399

Query: 778 VALNLSNNNLTGQITPRIGQ-----LKSLDFLDLSRNHFFGGIPSSLSRLR 823
             L+LSNN L      ++ +        L+ L L   ++   +   L  L 
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-06
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSK--FSNWVQVLSNLRSLTNLYLG 220
           +Q LD++   L  +   + L  L   + + L DC L++    +    L    +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 221 YCDLPPISTPSLLHI--NYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDH 269
             +L  +    +L      S  ++ + L N  LT +    L +    L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 114 LTYLDLSWNNFSGSPIPEFIGSLGKLSELALS----SAQFAGPIPHQLGNLSKLQVLDLR 169
           +  LD+     S +   E +  L +   + L     +      I   L     L  L+LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 170 FNNLFSSGNLDWLSYLSS----LRYLDLADC 196
            N L   G    L  L +    ++ L L +C
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 342 NSSLEWLYLAFNEITGTIPD--LGGFPSLQILSLENNRLTG----TISKSIGQLSKLELL 395
           +  ++ L +   E++       L      Q++ L++  LT      IS ++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 396 LLSGNSLRGV----ISEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQ 440
            L  N L  V    + + L +    +  L L +  LT       +   +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 7e-05
 Identities = 43/438 (9%), Positives = 100/438 (22%), Gaps = 10/438 (2%)

Query: 290 SLRHLDLLSNQLRE--VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEW 347
            ++ LD+   +L +    + L  +   + +      L        +++SS    N +L  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT---EARCKDISSALRVNPALAE 59

Query: 348 LYLAFNEITGT-IPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVI 406
           L L  NE+    +  +          ++   L        G       L          +
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 407 SEALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTV 466
           S+ L  +       +   +                         +    P + +      
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 467 ALDVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFD 526
            ++ +   +              L   +        +         +    + + SN+  
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 527 GPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLA 586
                          S+ +         +          L        L     +     
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 587 ILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGE 646
              L              +++S    +   +  S  L             +  ++    E
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 647 IPTWIGESLPNLVVLSLRSNKFHGN----IPFQLCYLSHIQILDLSLNNISGIIPKCFHN 702
           +   +G+    L VL L       +    +   L     ++ LDLS N +          
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 703 FTAMTKEKSSNLSIISNY 720
                      L +   Y
Sbjct: 420 SVRQPGCLLEQLVLYDIY 437

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 8e-05
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 753 IKIIDLSSNKLGGKVLEEIMD-LVGLVALNLSNNNLTGQ----ITPRIGQLKSLDFLDLS 807
           I+ +D+   +L      E++  L     + L +  LT      I+  +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 808 RNHFFGGIPSSLSRLRLLSVMDLSYNNFSG 837
            N         + +        +   +   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 364 GFPSLQILSLENNRLTGT----ISKSIGQLSKLELLLLSGNSLRG----VISEALFSNLS 415
               L++L L +  ++ +    ++ ++     L  L LS N L       + E++     
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 416 SLDTLQLSDNSLTLKF 431
            L+ L L D   + + 
Sbjct: 427 LLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 777 LVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHF----FGGIPSSLSRLRLLSVMDLS 831
           + +L++    L+      +   L+    + L            I S+L     L+ ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 832 YNNFSGKIPK 841
            N        
Sbjct: 64  SNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 238 SKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHG----SIPLAFGHMASLRH 293
           S  ++ +D+    L+++ +  L  +       + L    L       I  A     +L  
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQC-QVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 294 LDLLSNQL 301
           L+L SN+L
Sbjct: 60  LNLRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.003
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 342 NSSLEWLYLAFNEITGTIPD-----LGGFPSLQILSLENNRLTGTISKSIGQ-----LSK 391
            S L  L+LA  +++ +        L    SL+ L L NN L       + +        
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 392 LELLLLSGNSLRGVISEALFSNLSSLDTLQ 421
           LE L+L        + + L +      +L+
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 263 SSNLVDHIDLGSNQL-HGSIPLAFGHMASLRHLDLLSNQL-----REVPKFLGNMSSLKR 316
           S ++   +D+   +L           +   + + L    L     +++   L    +L  
Sbjct: 1   SLDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 317 LVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350
           L    NEL       +  +    T +  ++ L L
Sbjct: 60  LNLRSNELGDVGVHCV--LQGLQTPSCKIQKLSL 91

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 28/199 (14%), Positives = 73/199 (36%), Gaps = 13/199 (6%)

Query: 127 SPIPEFI--GSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSY 184
           +PI +     +L +  +  L        +     +L ++  L      + S   +++L+ 
Sbjct: 6   TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN 63

Query: 185 LSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVI 244
           L+ + + +     ++   N  +++  L +   +          +   L   N   +    
Sbjct: 64  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 245 DLSNNYLT------NSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLS 298
             +   L       N+I           +  ++  SNQ+    P    ++ +L  LD+ S
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 181

Query: 299 NQLREVPKFLGNMSSLKRL 317
           N++ ++   L  +++L+ L
Sbjct: 182 NKVSDIS-VLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 32/213 (15%), Positives = 60/213 (28%), Gaps = 20/213 (9%)

Query: 353 NEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFS 412
             I     D           L    +T T+S++   L ++  L      ++ +       
Sbjct: 6   TPINQIFTDTA-LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG---VE 59

Query: 413 NLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSN 472
            L++L  +  S+N LT               +                    T+  +   
Sbjct: 60  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 119

Query: 473 AGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLL 532
                        L      ++  +               +    ++ SSNQ     PL 
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALS----------GLTSLQQLNFSSNQVTDLKPLA 169

Query: 533 P-PNVSSLNLSKNKFSGSISFLCSISSHLLTYL 564
               +  L++S NK S  IS L  +++  L  L
Sbjct: 170 NLTTLERLDISSNKVS-DISVLAKLTN--LESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.6 bits (111), Expect = 5e-06
 Identities = 41/315 (13%), Positives = 78/315 (24%), Gaps = 20/315 (6%)

Query: 104 INPSLLKLQHLTYLDLSWNNFSG---SPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNL 160
           +   LL+   +  + LS N         + E I S   L     S              L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 161 SKLQVLDLRFNNLFS--------SGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLR 212
             L    L+   L +                     ++  L    L       Q  + + 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 213 SLTNLYLGYCDLP-PISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID 271
                              S++          +        +        +  N +    
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEF 331
           +    L G        +  L+           +   L +  +L+ L  +   L    +  
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 332 IQNVSSGSTKNSSLEWLYLAFNEITGTIPD------LGGFPSLQILSLENNRLTGTISKS 385
           + +  S   +N  L+ L L +NEI                P L  L L  NR +      
Sbjct: 263 VVDAFS-KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDV 320

Query: 386 IGQLSKLELLLLSGN 400
           + ++ ++      G 
Sbjct: 321 VDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 41/319 (12%), Positives = 87/319 (27%), Gaps = 25/319 (7%)

Query: 367 SLQILSLENNRLTG----TISKSIGQLSKLELLLLSGNSLRGVISEAL---FSNLSSLDT 419
           S++  SL+ + +T     ++   + +   ++ ++LSGN++    +  L    ++   L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 420 LQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISDIV 479
            + SD                L    L   K+                   +   + D +
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG------PTAQEPLIDFL 117

Query: 480 PDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLPPNVSSL 539
                     L+   L           L     +                  L       
Sbjct: 118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177

Query: 540 NLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEI 599
                +    +              +   +LL   L  C          N   +     +
Sbjct: 178 WAKTFQSHRLLH--TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235

Query: 600 PDSMSFLRSIGSLSLYNNSLSG------GLPSFFMNGSQLTLMDLGKNGLSGE----IPT 649
             ++    ++  L L +  LS             +    L  + L  N +  +    + T
Sbjct: 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 650 WIGESLPNLVVLSLRSNKF 668
            I E +P+L+ L L  N+F
Sbjct: 296 VIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 44/333 (13%), Positives = 87/333 (26%), Gaps = 11/333 (3%)

Query: 290 SLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349
           SL+   + +   + V   L    S+K +V S N +  E + ++    +        E+  
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 350 LAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEA 409
           +    +   IP+        +L             + G  ++  L+              
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 410 LFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALD 469
             + L      +++     L  +        L +I  G  ++     K      Q+    
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-L 187

Query: 470 VSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPI 529
           +    +              L  L          L D +              +  +   
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 530 PLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGR----LPDCWF-QFDS 584
             L        LS    +  +     + +  L  L L  N +       L      +   
Sbjct: 248 LGLNDC----LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 585 LAILNLANNSFFGEIPDSMSFLRSIGSLSLYNN 617
           L  L L  N  F E  D +  +R + S      
Sbjct: 304 LLFLELNGNR-FSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 6e-05
 Identities = 32/310 (10%), Positives = 85/310 (27%), Gaps = 19/310 (6%)

Query: 137 GKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNL---DWLSYLSSLRYLDL 193
           GK  +L   + +    +   L     ++ + L  N + +       + ++    L   + 
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 194 ADCKLSKFSN-----WVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSN 248
           +D    +  +        +L  L     L+            +   +    S        
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 249 NYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFL 308
               N + P      +  +  + +     +     +     +      +     +  +  
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQSH 185

Query: 309 GNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTIPDLGGFPSL 368
             + ++K +         E             K   L+         +     L  +P+L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 369 QILSLENNRLTGTISKSIGQ------LSKLELLLLSGNSLRG----VISEALFSNLSSLD 418
           + L L +  L+   + ++           L+ L L  N +       +   +   +  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 419 TLQLSDNSLT 428
            L+L+ N  +
Sbjct: 306 FLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 36/323 (11%), Positives = 84/323 (26%), Gaps = 32/323 (9%)

Query: 555 SISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE----IPDSMSFLRSIG 610
           SI    L    ++       +     + DS+  + L+ N+   E    + ++++  + + 
Sbjct: 4   SIEGKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 611 SLSLYNNSLS----------GGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVV 660
                +                L    +   +L  + L  N         + + L     
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 661 LSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY 720
           L       +G  P     ++                P           E  S       +
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLG------GKVLEEIMDL 774
             +  L  + M               + +    ++  L              +   +   
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 775 VGLVALNLSNNNLTGQITPRIGQ------LKSLDFLDLSRNHFFGGIPSSL-----SRLR 823
             L  L L++  L+ +    +           L  L L  N        +L      ++ 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 824 LLSVMDLSYNNFSGKIPKGTQLQ 846
            L  ++L+ N FS +     +++
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIR 325

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 20/216 (9%)

Query: 354 EITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
            I     D   F      +L+   +T  ++++  +L+ ++ ++ + + ++ V        
Sbjct: 13  PIKQIFSD-DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG---IQY 66

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNA 473
           L ++  L L+ N LT               +     K         + ++       S  
Sbjct: 67  LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL------SLE 120

Query: 474 GISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFDSYGPGIDVSSNQFDGPIPLLP 533
                  +    L         +N      +     K D+      +  NQ    +PL  
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL----SLEDNQISDIVPLAG 176

Query: 534 -PNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSN 568
              + +L LSKN  S  +  L  + +  L  L+L +
Sbjct: 177 LTKLQNLYLSKNHIS-DLRALAGLKN--LDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 13/190 (6%)

Query: 135 SLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA 194
           +  +  +  L        +      L+ +  +    +++ S   +  + YL ++  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLN 76

Query: 195 DCKLSKF-------SNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLS 247
             KL+         +     L   +      L         +     I+    L  +   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 248 NNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKF 307
            +    +       V S L     L       S  +    +  L++L L  N + ++   
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-A 195

Query: 308 LGNMSSLKRL 317
           L  + +L  L
Sbjct: 196 LAGLKNLDVL 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 36/202 (17%), Positives = 64/202 (31%), Gaps = 16/202 (7%)

Query: 606 LRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRS 665
                  +L   S++  +    +N   +  +    + +         + LPN+  L L  
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQGI---QYLPNVTKLFLNG 77

Query: 666 NKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLG 725
           NK     P           LD           K     +    +K  +LS+  N   ++ 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLD---------ENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 726 LRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNN 785
               L  L           +   +  L K+  LS        +  +  L  L  L LS N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 786 NLTGQITPRIGQLKSLDFLDLS 807
           +++      +  LK+LD L+L 
Sbjct: 189 HISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 34/210 (16%)

Query: 631 SQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLN 690
           ++    +L K  ++  +       L ++  +   ++        Q  YL ++  L L+ N
Sbjct: 24  AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN 78

Query: 691 NISGIIP---------KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG 741
            ++ I P                        +L  + +          +  L+     + 
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL 801
                  I  +  +  L+          +I D+                    +  L  L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDI------------------VPLAGLTKL 180

Query: 802 DFLDLSRNHFFGGIPSSLSRLRLLSVMDLS 831
             L LS+NH       +L+ L+ L V++L 
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 20/200 (10%)

Query: 209 SNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVD 268
                     L    +    T + L+     S++ I  +N+ + +           N+  
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELN-----SIDQIIANNSDIKS---VQGIQYLPNVT- 71

Query: 269 HIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRG-- 326
            + L  N+L    PLA         LD    +     K L  + SL       +++ G  
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 327 -----ELSEFIQNVSSGSTKNSSLEW--LYLAFNEITGTIPDLGGFPSLQILSLENNRLT 379
                E      N  +  T  S L         +     I  L G   LQ L L  N ++
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 380 GTISKSIGQLSKLELLLLSG 399
               +++  L  L++L L  
Sbjct: 192 DL--RALAGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 129 IPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSL 188
           +   +      S+ AL            L   +   VL+ R +   +   +     +  L
Sbjct: 12  LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLRII--EENIPEL 67

Query: 189 RYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSN 248
             L+L++ +L +  +   ++    +L  L L       + +   L       LE + L  
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN---ELKSERELDKIKGLKLEELWLDG 124

Query: 249 NYLTNSI 255
           N L+++ 
Sbjct: 125 NSLSDTF 131

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 32/253 (12%), Positives = 63/253 (24%), Gaps = 28/253 (11%)

Query: 67  RNC-CKWRGVRCSNKTGHVLGLDLRASSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFS 125
           R C C  R   C       +  DL                      ++   L        
Sbjct: 4   RICHCSNRVFLCQESKVTEIPSDL---------------------PRNAIELRFVLTKLR 42

Query: 126 GSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYL 185
                      G L ++ +S       I   + +     +  L    +  + NL +++  
Sbjct: 43  VIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLHEIRIEKANNLLYINPE 97

Query: 186 SSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVID 245
           +     +L    +S          +        L              +     S E + 
Sbjct: 98  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 157

Query: 246 LSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVP 305
           L  N              + L +     +N L       F   +    LD+   ++  +P
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 306 KF-LGNMSSLKRL 317
            + L N+  L+  
Sbjct: 218 SYGLENLKKLRAR 230

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 12/164 (7%)

Query: 355 ITGTIPDLGGFPSLQILSLENNRLTGTISK------SIGQLSKLELLLLSGNSLRGVISE 408
           I   I       S+     E   L G I        ++  L   + L LS N++  +   
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--- 63

Query: 409 ALFSNLSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVAL 468
              S+LS ++ L++      L    +           L            ++       L
Sbjct: 64  ---SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

Query: 469 DVSNAGISDIVPDWFWDLTNQLYYLNLSNNEMKGKLPDLSRKFD 512
            +SN  I++          ++L  L L+ N +     + +   +
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 11/162 (6%)

Query: 159 NLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQVLSNLRSLTNLY 218
             ++ + ++L             LS L + ++L L+   + K       +S+L  + NL 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-------ISSLSGMENLR 73

Query: 219 LGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLH 278
           +       I     L        E+    N   + S    L N+    + +  + +    
Sbjct: 74  ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 279 GSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFS 320
                    +  L  L L  N L    K     S  +  V  
Sbjct: 134 DK----LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)

Query: 541 LSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIP 600
           L+      +  +  ++       LDL    +   + +     D    ++ ++N       
Sbjct: 3   LTAELIEQAAQYTNAVR---DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KL 56

Query: 601 DSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVV 660
           D    LR + +L + NN +             LT + L  N L          SL +L  
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 661 LSLRSNKFH---GNIPFQLCYLSHIQILDLS 688
           L +  N          + +  +  +++LD  
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 4/116 (3%)

Query: 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSK 162
            I      L     +D S N        +    L +L  L +++ +           L  
Sbjct: 32  VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88

Query: 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCKLSKFSNWVQ-VLSNLRSLTNL 217
           L  L L  N+L   G+LD L+ L SL YL +    ++   ++   V+  +  +  L
Sbjct: 89  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 9/147 (6%)

Query: 354 EITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSN 413
           E+             + L L   ++   I      L + + +  S N +R +     F  
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG---FPL 61

Query: 414 LSSLDTLQLSDNSLTLKFSHDWTPPFQLFNIFLGSCKI----GPRFPKWLQSQNQTVALD 469
           L  L TL +++N +             L  + L +  +           L+S      L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 470 VSNAGISDIVPDWFWDLTNQLYYLNLS 496
                         + +   +  L+  
Sbjct: 122 NPVTNKKHYRLYVIYKVPQ-VRVLDFQ 147

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 2/110 (1%)

Query: 756 IDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI-GQLKSLDFLDLSRNHFFGG 814
           +  + +      L  +     L  L + N      +  R    L  L  L + ++     
Sbjct: 13  LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 815 IPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPL 864
            P +      LS ++LS+N       K  Q         +GNP  C   L
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 1/103 (0%)

Query: 611 SLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHG 670
            L    +               LT + +        +       L  L  L++  +    
Sbjct: 12  GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 671 NIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSN 713
             P    +   +  L+LS N +  +  K     +      S N
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1025
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.47
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	96.06
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	95.74

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.7e-37  Score=340.23  Aligned_cols=294  Identities=29%  Similarity=0.445  Sum_probs=221.3

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEECCCCCCCCCCcccc--ccccc
Q 047190           34 SCLDEEKESLLAFKQGLIDESGILSSWGREDEKRNCCK--WRGVRCSNKT--GHVLGLDLRASSDSPVDALKG--TINPS  107 (1025)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~~~~~~~l~g--~l~~~  107 (1025)
                      -|.++||+||++||+++.+|. .+++|.   .++|||.  |.||+|+..+  +||++|||++      ..+.|  .+|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~------~~l~g~~~lp~~   71 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC------CCCCCCCCCChH
Confidence            499999999999999998875 689997   4789995  9999998644  4899999998      56666  67899


Q ss_pred             CcCCCCCcEEEccC-CCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCC
Q 047190          108 LLKLQHLTYLDLSW-NNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLS  186 (1025)
Q Consensus       108 l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~  186 (1025)
                      +++|++|++|+|++ |.++|. +|+.|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+ ....+..+.+++
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-~~~~p~~l~~l~  149 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLP  149 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCT
T ss_pred             HhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc-cccCchhhccCc
Confidence            99999999999986 788885 899999999999999999999988888888889999999988875 233345555666


Q ss_pred             CCCeeeccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCC
Q 047190          187 SLRYLDLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNL  266 (1025)
Q Consensus       187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~  266 (1025)
                      +|+++++++|.+++                          ..+.  ....+...++.++++.|++++..+..+..+.   
T Consensus       150 ~L~~l~l~~n~l~~--------------------------~ip~--~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~---  198 (313)
T d1ogqa_         150 NLVGITFDGNRISG--------------------------AIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANLN---  198 (313)
T ss_dssp             TCCEEECCSSCCEE--------------------------ECCG--GGGCCCTTCCEEECCSSEEEEECCGGGGGCC---
T ss_pred             ccceeecccccccc--------------------------cccc--ccccccccccccccccccccccccccccccc---
Confidence            66666666555543                          2222  1222213346666777777666666665554   


Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE  346 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~  346 (1025)
                      ...++++.+...+.+|..+..+++++.+++++|.+.+.++.++.+++|+.|++++|+++|.+|+.+..++       +|+
T Consensus       199 ~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~-------~L~  271 (313)
T d1ogqa_         199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-------FLH  271 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT-------TCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCC-------CCC
Confidence            3467888888887888888888888888888888777555677777788888888887777777777766       777


Q ss_pred             EEEccccccccccCCCCCCCCCcEEEeeccc
Q 047190          347 WLYLAFNEITGTIPDLGGFPSLQILSLENNR  377 (1025)
Q Consensus       347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~  377 (1025)
                      +|+|++|+++|.+|.++++++|+.+++++|+
T Consensus       272 ~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             EEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            7777777777777766556666666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=9.8e-33  Score=303.49  Aligned_cols=258  Identities=34%  Similarity=0.584  Sum_probs=240.5

Q ss_pred             cccEEEccCccccc--cCCCcccCCCCCCEEEcCC-CcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEE
Q 047190          560 LLTYLDLSNNLLSG--RLPDCWFQFDSLAILNLAN-NSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLM  636 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  636 (1025)
                      .++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            48899999999988  4889999999999999997 89999999999999999999999999999999999999999999


Q ss_pred             eCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcc-cEEEccccccccccCccccCccccccccccCcc
Q 047190          637 DLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHI-QILDLSLNNISGIIPKCFHNFTAMTKEKSSNLS  715 (1025)
Q Consensus       637 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  715 (1025)
                      ++++|.+.+.+|.++. .++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..++++..          
T Consensus       131 ~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~----------  199 (313)
T d1ogqa_         131 DFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL----------  199 (313)
T ss_dssp             ECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC----------
T ss_pred             ccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            9999999999999998 79999999999999999999999998886 89999999999999887765432          


Q ss_pred             cccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCC
Q 047190          716 IISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRI  795 (1025)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  795 (1025)
                                                            ..++++++...|.+|..+..++.++.+++++|.+++.+| .+
T Consensus       200 --------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~  240 (313)
T d1ogqa_         200 --------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV  240 (313)
T ss_dssp             --------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GC
T ss_pred             --------------------------------------ccccccccccccccccccccccccccccccccccccccc-cc
Confidence                                                  468999999999999999999999999999999999876 58


Q ss_pred             CCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCC
Q 047190          796 GQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKC  868 (1025)
Q Consensus       796 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~~~~~~~~~~~~gN~~lcg~~~~~~C  868 (1025)
                      +.+++|+.|||++|+++|.+|+.++++++|++|||++|+|+|.||....+..++...+.||+.+||.|++ .|
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            9999999999999999999999999999999999999999999999888889988899999999999875 67

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=5.3e-25  Score=248.81  Aligned_cols=192  Identities=22%  Similarity=0.333  Sum_probs=117.9

Q ss_pred             cccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCC
Q 047190          578 CWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPN  657 (1025)
Q Consensus       578 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~  657 (1025)
                      .+..+++++.+++++|.+++..|  +...++|++|++++|.++..  ..+..+++|+.|++++|++++ ++. +. .+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-LS-GLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTT
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-CCc-cc-cccc
Confidence            34445555556666655554432  23345566666666665532  245556666666666666663 222 22 4666


Q ss_pred             CcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeec
Q 047190          658 LVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFD  737 (1025)
Q Consensus       658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (1025)
                      |++|++++|++++..  .+..++.++.+++++|.+++.  ..+..++.                                
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~--------------------------------  308 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKN--------------------------------  308 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTT--------------------------------
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcc--------------------------------
Confidence            666666666665433  255566666777766666542  11222222                                


Q ss_pred             ccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcc
Q 047190          738 TWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPS  817 (1025)
Q Consensus       738 ~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~  817 (1025)
                                     ++.|++++|++++..+  +..+++|++|++++|+|++ +| .++++++|++||+++|++++.+| 
T Consensus       309 ---------------l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         309 ---------------LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             ---------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ---------------cCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-
Confidence                           2567777777776532  6777788888888888775 33 57778888888888888887654 


Q ss_pred             cccCCCCCCEEECcCC
Q 047190          818 SLSRLRLLSVMDLSYN  833 (1025)
Q Consensus       818 ~l~~l~~L~~Ldls~N  833 (1025)
                       +.++++|+.|++++|
T Consensus       369 -l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 -LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GTTCTTCSEEECCCE
T ss_pred             -hccCCCCCEeeCCCC
Confidence             777888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2e-24  Score=244.11  Aligned_cols=52  Identities=17%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRN  809 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N  809 (1025)
                      +.|++++|++++ ++ .+.++++|++|++++|++++.+|  ++++++|++|+|++|
T Consensus       332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            555666665554 22 46667777777777777776655  677777777777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.4e-22  Score=220.77  Aligned_cols=268  Identities=20%  Similarity=0.224  Sum_probs=176.9

Q ss_pred             eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccc
Q 047190          518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG  597 (1025)
Q Consensus       518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  597 (1025)
                      ++++++.++...+..++++++|++++|+++...+.. +..+++|++|++++|.+....|..|.+++.|++|++++|+++.
T Consensus        15 ~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~-f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~   93 (305)
T d1xkua_          15 VQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE   93 (305)
T ss_dssp             EECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred             EEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhH-hhccccccccccccccccccchhhhhCCCccCEecccCCccCc
Confidence            666666666443334567777777777776554322 2235677777777777776667777777777777777777764


Q ss_pred             cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCcc--ccChhhhhcCCCCcEEEeecCcCcccCccc
Q 047190          598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSG--EIPTWIGESLPNLVVLSLRSNKFHGNIPFQ  675 (1025)
Q Consensus       598 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~  675 (1025)
                       +|..+  ...+..|++.+|.+.+..+..+.....+..++...|....  ..+..+. .+++|+++++++|.+.. +|..
T Consensus        94 -l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~~-l~~~  168 (305)
T d1xkua_          94 -LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQG  168 (305)
T ss_dssp             -CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSS
T ss_pred             -Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc-cccccCccccccCCccc-cCcc
Confidence             34333  3567777777777776666666677777777777765431  2233333 56777777777777763 3433


Q ss_pred             ccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeE
Q 047190          676 LCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKI  755 (1025)
Q Consensus       676 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  755 (1025)
                      +  .++|+.|++++|..++..+..|..++.+                                               +.
T Consensus       169 ~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l-----------------------------------------------~~  199 (305)
T d1xkua_         169 L--PPSLTELHLDGNKITKVDAASLKGLNNL-----------------------------------------------AK  199 (305)
T ss_dssp             C--CTTCSEEECTTSCCCEECTGGGTTCTTC-----------------------------------------------CE
T ss_pred             c--CCccCEEECCCCcCCCCChhHhhccccc-----------------------------------------------cc
Confidence            2  4677777777777776666666555444                                               66


Q ss_pred             EEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccc------cCCCCCCEEE
Q 047190          756 IDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSL------SRLRLLSVMD  829 (1025)
Q Consensus       756 LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l------~~l~~L~~Ld  829 (1025)
                      |++++|.+++..+..+.++++|++|+|++|+|+ .+|.+|+.+++|++|+|++|+|+...+..|      ..+.+|+.|+
T Consensus       200 L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEE
Confidence            777777777777777777778888888888777 456677777788888888887775433332      3456777777


Q ss_pred             CcCCccc-ccCCC
Q 047190          830 LSYNNFS-GKIPK  841 (1025)
Q Consensus       830 ls~N~l~-g~ip~  841 (1025)
                      +++|++. +.+|.
T Consensus       279 L~~N~~~~~~~~~  291 (305)
T d1xkua_         279 LFSNPVQYWEIQP  291 (305)
T ss_dssp             CCSSSSCGGGSCG
T ss_pred             CCCCcCccCcCCH
Confidence            7777774 45543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-23  Score=223.55  Aligned_cols=228  Identities=19%  Similarity=0.117  Sum_probs=191.6

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC-C
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG-K  640 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls-~  640 (1025)
                      ..++.+++.++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|++++|++.+..+..+..+..++.++.. .
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34567777777 5666543  568888899888887777788888889999999888888888888888888888765 4


Q ss_pred             CcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccc
Q 047190          641 NGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNY  720 (1025)
Q Consensus       641 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  720 (1025)
                      |.++ .++...+..+++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.+              
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L--------------  155 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             cccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch--------------
Confidence            5555 5544444478899999999999887777788888899999999999987777777666655              


Q ss_pred             ccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCC
Q 047190          721 YYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKS  800 (1025)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~  800 (1025)
                                                       +.|++++|++++..+..|.++++|+.+++++|++++..|..|+++++
T Consensus       156 ---------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ---------------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence                                             78999999999888899999999999999999999999999999999


Q ss_pred             ccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCC
Q 047190          801 LDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP  840 (1025)
Q Consensus       801 L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip  840 (1025)
                      |++||+++|++++..|..+..+++|++|++++|++.|..+
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            9999999999999999999999999999999999998765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.2e-23  Score=221.63  Aligned_cols=233  Identities=22%  Similarity=0.222  Sum_probs=149.0

Q ss_pred             cccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcc-cCcccccCCccccCCCCccEEeC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLY-NNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      .+++|+|++|+|++..+.+|.++++|++|++++|++....+..+..+..++.+... .|.++...+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45666667766665555666677777777777777766666666666666666543 44555555666777777777777


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|.+. .++...+...++|+.+++++|++++..+..+..+++|+.|++++|++++..|..|..+++|            
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L------------  179 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------------  179 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------------
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc------------
Confidence            777766 3333333356667777777777766656666667777777777777776666666555554            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.+++++|++++..|..|.++++|++||+++|++++.+|..|+.+
T Consensus       180 -----------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         180 -----------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             -----------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             -----------------------------------chhhhhhccccccChhHhhhhhhcccccccccccccccccccccc
Confidence                                               567777777777767777777777777777777777666677777


Q ss_pred             CCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          799 KSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      .+|++|+|++|.+.+.-+.. .-...++.+....+++.|..|.
T Consensus       225 ~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         225 RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             TTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            77777777777776543211 0012233445555666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.5e-21  Score=212.51  Aligned_cols=265  Identities=20%  Similarity=0.234  Sum_probs=199.7

Q ss_pred             CceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcc
Q 047190          536 VSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLY  615 (1025)
Q Consensus       536 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  615 (1025)
                      .+.++-++++++..++.+.    +.+++|+|++|+|+...+..|.++++|++|++++|.+....|..|..++.|++|+++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccCCCCC----CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4556666666664433221    568888888888886666678888888888888888887777888888888888888


Q ss_pred             cCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCc--ccCcccccccCcccEEEccccccc
Q 047190          616 NNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFH--GNIPFQLCYLSHIQILDLSLNNIS  693 (1025)
Q Consensus       616 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~  693 (1025)
                      +|+++.. |..+  ...++.|++.+|.+. .++...+.....++.++...|...  ...+..+..+++|+.+++++|.++
T Consensus        88 ~n~l~~l-~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLKEL-PEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCSBC-CSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccCcC-ccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            8888753 3322  356788888888887 566555556777778888777543  344556777888888888888776


Q ss_pred             cccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhh
Q 047190          694 GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD  773 (1025)
Q Consensus       694 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~  773 (1025)
                      . +|..+                                                 .+.++.|++++|..++.++..+..
T Consensus       164 ~-l~~~~-------------------------------------------------~~~L~~L~l~~n~~~~~~~~~~~~  193 (305)
T d1xkua_         164 T-IPQGL-------------------------------------------------PPSLTELHLDGNKITKVDAASLKG  193 (305)
T ss_dssp             S-CCSSC-------------------------------------------------CTTCSEEECTTSCCCEECTGGGTT
T ss_pred             c-cCccc-------------------------------------------------CCccCEEECCCCcCCCCChhHhhc
Confidence            3 33221                                                 223488999999999999999999


Q ss_pred             cccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCCCC--------CC
Q 047190          774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT--------QL  845 (1025)
Q Consensus       774 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~~~--------~~  845 (1025)
                      ++.+++|++++|.+++..|..+.++++|++|+|++|+|+ .+|..+..+++|++|++++|+++. |+...        ..
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~  271 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKK  271 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTS
T ss_pred             cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCcchhccc
Confidence            999999999999999999999999999999999999998 568899999999999999999984 44321        12


Q ss_pred             CCcCCCCcCCCCCCC
Q 047190          846 QRFGASTYAGNPELC  860 (1025)
Q Consensus       846 ~~~~~~~~~gN~~lc  860 (1025)
                      .++....+.|||+-+
T Consensus       272 ~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         272 ASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCCSEEECCSSSSCG
T ss_pred             CCCCEEECCCCcCcc
Confidence            223334467887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-22  Score=213.78  Aligned_cols=202  Identities=24%  Similarity=0.291  Sum_probs=148.1

Q ss_pred             CCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEE
Q 047190          582 FDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVL  661 (1025)
Q Consensus       582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L  661 (1025)
                      ..++.+.+.++++++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+|+ .+|.. . .+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-cccccccc
Confidence            344445555655555 3444442  45666666666666655566667777777777777776 55532 2 46777777


Q ss_pred             EeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCC
Q 047190          662 SLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKG  741 (1025)
Q Consensus       662 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (1025)
                      +|++|++++ .+..+..+++|+.|++++|.+.+..+..+..+..+                                   
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-----------------------------------  126 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-----------------------------------  126 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-----------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeecccccccccc-----------------------------------
Confidence            777777764 35567777777778887777776555555444443                                   


Q ss_pred             ccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccC
Q 047190          742 GQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSR  821 (1025)
Q Consensus       742 ~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  821 (1025)
                                  +.|++++|.+++..+..+..++.|+.|++++|+|++.++..|+.+++|++|||++|+|+ .+|+.+..
T Consensus       127 ------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         127 ------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             ------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ------------ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCC
Confidence                        67888888888777778888889999999999999988888999999999999999999 78888889


Q ss_pred             CCCCCEEECcCCccccc
Q 047190          822 LRLLSVMDLSYNNFSGK  838 (1025)
Q Consensus       822 l~~L~~Ldls~N~l~g~  838 (1025)
                      +++|+.|+|++|++.|.
T Consensus       194 ~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TCCCSEEECCSCCBCCS
T ss_pred             CCCCCEEEecCCCCCCC
Confidence            99999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.8e-21  Score=204.50  Aligned_cols=200  Identities=22%  Similarity=0.173  Sum_probs=174.2

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ..+.+.+.+++.++ .+|..+.  +++++|+|++|+|++..+..|..+++|++|+|++|+|+.. | .+..+++|++|+|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            45667799999998 5676653  5799999999999987778899999999999999999854 3 3578999999999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIIS  718 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  718 (1025)
                      ++|+++ .+|..+. .+++|++|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..++.+            
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            999998 5666665 69999999999999998888889999999999999999997777666665555            


Q ss_pred             ccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCC
Q 047190          719 NYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQL  798 (1025)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  798 (1025)
                                                         +.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+
T Consensus       151 -----------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         151 -----------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             -----------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             -----------------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCC
Confidence                                               88999999999999999999999999999999999 789899999


Q ss_pred             CCccEEeCCCCcCCC
Q 047190          799 KSLDFLDLSRNHFFG  813 (1025)
Q Consensus       799 ~~L~~LdLs~N~l~g  813 (1025)
                      ++|+.|+|++|.+..
T Consensus       195 ~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         195 HLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCSEEECCSCCBCC
T ss_pred             CCCCEEEecCCCCCC
Confidence            999999999998874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=2.7e-16  Score=174.05  Aligned_cols=179  Identities=25%  Similarity=0.338  Sum_probs=103.9

Q ss_pred             ccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCc
Q 047190          267 VDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLE  346 (1025)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~  346 (1025)
                      +++|+|+++.++. +|+.   .++|++|++++|+++.+|+.+   .+|+.|++++|.++..     ..++      +.|+
T Consensus        40 l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l-----~~lp------~~L~  101 (353)
T d1jl5a_          40 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKAL-----SDLP------PLLE  101 (353)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCC-----CSCC------TTCC
T ss_pred             CCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchh-----hhhc------cccc
Confidence            5666666666653 4432   456777777777777777543   4677777777776532     1222      1688


Q ss_pred             EEEccccccccccCCCCCCCCCcEEEeecccccCcccccccccCCcceeeccCcccccccchhhhcCCCCCcEEECCCCc
Q 047190          347 WLYLAFNEITGTIPDLGGFPSLQILSLENNRLTGTISKSIGQLSKLELLLLSGNSLRGVISEALFSNLSSLDTLQLSDNS  426 (1025)
Q Consensus       347 ~L~L~~n~l~~~~p~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  426 (1025)
                      +|++++|.+. .+|.++.+++|++|++++|.+... +.   ....+..+.+..+......   .+..++.++.+++++|.
T Consensus       102 ~L~L~~n~l~-~lp~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~~---~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSC
T ss_pred             cccccccccc-cccchhhhccceeecccccccccc-cc---ccccccchhhccccccccc---cccccccceeccccccc
Confidence            8888888876 456677788888888888877633 22   2345666666665554221   25667778888888776


Q ss_pred             cccccccCCCCCcccceeeccCCCCCCCCchhhhcCCcccEEEccCCCCCC
Q 047190          427 LTLKFSHDWTPPFQLFNIFLGSCKIGPRFPKWLQSQNQTVALDVSNAGISD  477 (1025)
Q Consensus       427 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~~~~L~~L~Ls~n~i~~  477 (1025)
                      .......    ....+.+....+.+. .++ .+..++.++.+++++|....
T Consensus       174 ~~~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~  218 (353)
T d1jl5a_         174 LKKLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT  218 (353)
T ss_dssp             CSSCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc----ccccccccccccccc-ccc-cccccccccccccccccccc
Confidence            5532211    112233333333322 222 23445566666666655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=3.8e-16  Score=172.83  Aligned_cols=178  Identities=27%  Similarity=0.295  Sum_probs=79.9

Q ss_pred             CCcEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccC-CCCCee
Q 047190          113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYL-SSLRYL  191 (1025)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l-~~L~~L  191 (1025)
                      ++++|||+++.++.  +|+.   .++|++|+|++|+|+ .+|..+   .+|++|++++|.+....      .+ +.|++|
T Consensus        39 ~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~------~lp~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALS------DLPPLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCC------SCCTTCCEE
T ss_pred             CCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhh------hhccccccc
Confidence            34555555555542  3432   244555555555555 344332   34555555555442211      11 235555


Q ss_pred             eccCCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCCCCcccccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEE
Q 047190          192 DLADCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPISTPSLLHINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHID  271 (1025)
Q Consensus       192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~  271 (1025)
                      ++++|.++.++.    ++.+++|++|+++++.+......       ...+..+.+..+....  ...+..+..  ++.+.
T Consensus       104 ~L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~~-------~~~l~~l~~~~~~~~~--~~~l~~l~~--l~~L~  168 (353)
T d1jl5a_         104 GVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPDL-------PPSLEFIAAGNNQLEE--LPELQNLPF--LTAIY  168 (353)
T ss_dssp             ECCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSS--CCCCTTCTT--CCEEE
T ss_pred             cccccccccccc----hhhhccceeeccccccccccccc-------cccccchhhccccccc--ccccccccc--ceecc
Confidence            555555555432    34555556666555555443321       1344455544443321  222233333  45555


Q ss_pred             cCCCCCCCCchhhhhCCCCCcEEEccCCCCCCcchhhcCCCCccEEEeecCCCC
Q 047190          272 LGSNQLHGSIPLAFGHMASLRHLDLLSNQLREVPKFLGNMSSLKRLVFSYNELR  325 (1025)
Q Consensus       272 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  325 (1025)
                      ++.|.......    .....+.+....+.+..++. +..++.|+.+++++|...
T Consensus       169 l~~n~~~~~~~----~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         169 ADNNSLKKLPD----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CCSSCCSSCCC----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccc----cccccccccccccccccccc-cccccccccccccccccc
Confidence            55554442111    11223344444444443332 344555555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.7e-19  Score=204.28  Aligned_cols=65  Identities=17%  Similarity=0.126  Sum_probs=33.9

Q ss_pred             eEEEcccCCCCCc----ChhhHhhcccCCeEeccCccccccCCCCC----C-CCCCccEEeCCCCcCCCcCccc
Q 047190          754 KIIDLSSNKLGGK----VLEEIMDLVGLVALNLSNNNLTGQITPRI----G-QLKSLDFLDLSRNHFFGGIPSS  818 (1025)
Q Consensus       754 ~~LdLs~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~----~-~l~~L~~LdLs~N~l~g~ip~~  818 (1025)
                      +.|+|++|+++..    +++.+..++.|++|||++|+|+......+    . ..+.|+.|++++|.+....+..
T Consensus       372 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~  445 (460)
T d1z7xw1         372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  445 (460)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             CEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH
Confidence            5566666666532    33445555666666666666654322111    1 2235666666666666544433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.1e-17  Score=170.73  Aligned_cols=203  Identities=19%  Similarity=0.307  Sum_probs=123.9

Q ss_pred             EEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcC
Q 047190          564 LDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGL  643 (1025)
Q Consensus       564 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  643 (1025)
                      ++++.+.+++.+  .+..+.+|+.|++.+|.++..  +.+..+++|++|++++|++++..|  +..+++|+.+++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            444555554432  234455566666666665532  235556666666666666654332  56666666666666666


Q ss_pred             ccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccc
Q 047190          644 SGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYN  723 (1025)
Q Consensus       644 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  723 (1025)
                      + .++. +. .+++|+.+++++|...+..  .+...+.++.+.++++.+....+  +...                    
T Consensus        98 ~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~--------------------  150 (227)
T d1h6ua2          98 K-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGL--------------------  150 (227)
T ss_dssp             S-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGC--------------------
T ss_pred             c-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccc--------------------
Confidence            5 4442 33 4666666666666655432  34455666666666666553322  2222                    


Q ss_pred             cccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccE
Q 047190          724 LGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDF  803 (1025)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~  803 (1025)
                                                 +.++.|++++|.+++..  .++++++|++|+|++|++++..  .++++++|++
T Consensus       151 ---------------------------~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~  199 (227)
T d1h6ua2         151 ---------------------------TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIE  199 (227)
T ss_dssp             ---------------------------TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCE
T ss_pred             ---------------------------cccccccccccccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCE
Confidence                                       22366777777776543  3677888888888888887643  2788888889


Q ss_pred             EeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190          804 LDLSRNHFFGGIPSSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       804 LdLs~N~l~g~ip~~l~~l~~L~~Ldls~  832 (1025)
                      |+|++|++++..  .+.++++|+.||+++
T Consensus       200 L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             EECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            999988888653  378888888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.1e-19  Score=202.23  Aligned_cols=385  Identities=20%  Similarity=0.168  Sum_probs=175.8

Q ss_pred             CCcEEEccCCCCCCCCCcccccCcccccccccccccCCC----CcchhccCCCCCCEEecccCCCCCCCCc---hhcc-c
Q 047190          113 HLTYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAG----PIPHQLGNLSKLQVLDLRFNNLFSSGNL---DWLS-Y  184 (1025)
Q Consensus       113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~L~~L~~L~Ls~n~i~~~~~~---~~l~-~  184 (1025)
                      +|++||+++|++++..+.+.+..++++++|+|++|+++.    .++..+..+++|++|||++|.+...+..   ..+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            355666666666554334445556666666666666552    2334455566666666666654211100   1111 1


Q ss_pred             CCCCCeeeccCCcCCCC--cchHHhhCCCCCCCEEEcCCCCCCCCCCCccc--ccccCCcccEEEccCCCCCCCCc----
Q 047190          185 LSSLRYLDLADCKLSKF--SNWVQVLSNLRSLTNLYLGYCDLPPISTPSLL--HINYSKSLEVIDLSNNYLTNSIY----  256 (1025)
Q Consensus       185 l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~----  256 (1025)
                      ..+|++|+|++|.+++.  ..+...+..+++|++|++++|.+.......+.  .................+.....    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            23566666666666543  12334555666666666666654422110000  00000122222222222211100    


Q ss_pred             hhhhhcCCCCccEEEcCCCCCCCCc----hhhh-hCCCCCcEEEccCCCCCCc-----chhhcCCCCccEEEeecCCCCC
Q 047190          257 PWLFNVSSNLVDHIDLGSNQLHGSI----PLAF-GHMASLRHLDLLSNQLREV-----PKFLGNMSSLKRLVFSYNELRG  326 (1025)
Q Consensus       257 ~~l~~l~~~~L~~L~Ls~n~l~~~~----p~~~-~~l~~L~~L~Ls~n~l~~l-----p~~l~~l~~L~~L~Ls~n~l~~  326 (1025)
                      ..+.....  ++.++++.+......    ...+ ........+++..+.+...     ...+...+.++.+++++|.+..
T Consensus       163 ~~l~~~~~--~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         163 SVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHCTT--CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence            11112223  455555544433110    0111 1122344555555544331     1223344555555555554432


Q ss_pred             cchH-HhhhcCCCCCCCCCCcEEEccccccccccCC-----CCCCCCCcEEEeecccccCcccccc-----cccCCccee
Q 047190          327 ELSE-FIQNVSSGSTKNSSLEWLYLAFNEITGTIPD-----LGGFPSLQILSLENNRLTGTISKSI-----GQLSKLELL  395 (1025)
Q Consensus       327 ~~~~-~~~~l~~~~~~~~~L~~L~L~~n~l~~~~p~-----l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L  395 (1025)
                      .... .+...   ......++.+++++|.+......     +...+.++.+++++|.+++.....+     .....|+.+
T Consensus       241 ~~~~~~~~~~---~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         241 VGMAELCPGL---LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             HHHHHHHHHH---TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccchhhccc---ccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence            1110 00000   01112555555555554422111     2334555555665555543222211     122455666


Q ss_pred             eccCcccccccchh---hhcCCCCCcEEECCCCcccccc----ccCC-CCCcccceeeccCCCCCC----CCchhhhcCC
Q 047190          396 LLSGNSLRGVISEA---LFSNLSSLDTLQLSDNSLTLKF----SHDW-TPPFQLFNIFLGSCKIGP----RFPKWLQSQN  463 (1025)
Q Consensus       396 ~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~----~~~~-~~~~~L~~L~L~~~~l~~----~~p~~l~~~~  463 (1025)
                      ++++|.+.......   .+...++|++|+|++|++....    ...+ .....|+.|++++|.++.    .+++.+..++
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             cccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence            66666554321111   1334456666666666654321    1111 123446666666666653    2445677778


Q ss_pred             cccEEEccCCCCCCchhhhhhh----ccccceEEEccCccCCC
Q 047190          464 QTVALDVSNAGISDIVPDWFWD----LTNQLYYLNLSNNEMKG  502 (1025)
Q Consensus       464 ~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~Ls~N~l~~  502 (1025)
                      +|++|++++|.|++.....+..    ....|+.|++.+|.+..
T Consensus       398 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            8889999999888765544432    22358888888877753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.8e-17  Score=167.92  Aligned_cols=78  Identities=18%  Similarity=-0.003  Sum_probs=44.2

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECc
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLS  831 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls  831 (1025)
                      +.+++++|+++...+..+.....++.+++++|+++...+..|.++++|++|||++|+++...+..|.+++.|+++++.
T Consensus       156 ~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             eeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            455666666654333333322222333456666665545556777777777777777775555556666666655543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.6e-16  Score=163.97  Aligned_cols=204  Identities=20%  Similarity=0.284  Sum_probs=160.8

Q ss_pred             eeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccC
Q 047190          538 SLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNN  617 (1025)
Q Consensus       538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  617 (1025)
                      .++++.+++++....   ..+.+|+.|++.+|.++. ++ .+.++++|++|++++|.+++..|  +..+++|+++++++|
T Consensus        23 ~~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          23 KIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHTTCSSTTSEECH---HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHhCCCCcCCcCCH---HHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            345555555554322   234779999999999985 43 58899999999999999986543  788999999999999


Q ss_pred             cccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccC
Q 047190          618 SLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIP  697 (1025)
Q Consensus       618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  697 (1025)
                      .++. + ..+..+++|+.++++++...+. +. +. ..+.++.+.++++.+....  .+...++|+.|++++|.+++..+
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~~~-~~-~~-~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~  168 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQITDV-TP-LA-GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP  168 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCCCC-GG-GT-TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG
T ss_pred             cccc-c-cccccccccccccccccccccc-ch-hc-cccchhhhhchhhhhchhh--hhccccccccccccccccccchh
Confidence            9874 3 3578899999999999998743 32 33 5789999999999887543  47788999999999998875432


Q ss_pred             ccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccC
Q 047190          698 KCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGL  777 (1025)
Q Consensus       698 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L  777 (1025)
                        ++++++|                                               +.|||++|++++. + .++++++|
T Consensus       169 --l~~l~~L-----------------------------------------------~~L~Ls~n~l~~l-~-~l~~l~~L  197 (227)
T d1h6ua2         169 --LANLSKL-----------------------------------------------TTLKADDNKISDI-S-PLASLPNL  197 (227)
T ss_dssp             --GTTCTTC-----------------------------------------------CEEECCSSCCCCC-G-GGGGCTTC
T ss_pred             --hcccccc-----------------------------------------------eecccCCCccCCC-h-hhcCCCCC
Confidence              4444444                                               8899999999874 3 38999999


Q ss_pred             CeEeccCccccccCCCCCCCCCCccEEeCCC
Q 047190          778 VALNLSNNNLTGQITPRIGQLKSLDFLDLSR  808 (1025)
Q Consensus       778 ~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  808 (1025)
                      +.|+|++|++++..|  ++++++|++|++++
T Consensus       198 ~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            999999999997654  88999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=167.12  Aligned_cols=220  Identities=19%  Similarity=0.110  Sum_probs=119.5

Q ss_pred             ceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccC-CcccccccCCCEEEcc
Q 047190          537 SSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEI-PDSMSFLRSIGSLSLY  615 (1025)
Q Consensus       537 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~  615 (1025)
                      +.++.++..++...+...    +++++|++++|+++...+.+|.++++|++|++++|.+...+ +..|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~----~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC----SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC----CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            345555555543222111    34666666666666544555666666666666666665433 3445666666666654


Q ss_pred             c-CcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccC-cccEEEccccccc
Q 047190          616 N-NSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLS-HIQILDLSLNNIS  693 (1025)
Q Consensus       616 ~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~  693 (1025)
                      . |++....+..|.++++|+.|++++|++....+......++.+..+...++.+....+..+..++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 4555556666666666666666666665222222222344455555555555555455555443 5666666666666


Q ss_pred             cccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhh
Q 047190          694 GIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMD  773 (1025)
Q Consensus       694 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~  773 (1025)
                      ...+..+ ....+                                              .+.+++++|+++...+..|.+
T Consensus       167 ~i~~~~~-~~~~l----------------------------------------------~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         167 EIHNCAF-NGTQL----------------------------------------------DELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             EECTTTT-TTCCE----------------------------------------------EEEECTTCTTCCCCCTTTTTT
T ss_pred             ccccccc-cchhh----------------------------------------------hccccccccccccccHHHhcC
Confidence            3332222 11111                                              133445666666554555666


Q ss_pred             cccCCeEeccCccccccCCCCCCCCCCccEEeCC
Q 047190          774 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS  807 (1025)
Q Consensus       774 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs  807 (1025)
                      +++|++|+|++|+|+...+..|.+++.|++++++
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            7777777777777765545556666666555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=6.3e-17  Score=162.10  Aligned_cols=156  Identities=25%  Similarity=0.273  Sum_probs=91.7

Q ss_pred             cEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccC-cccccccCcccEEEccccccccccCccccCcccccccccc
Q 047190          634 TLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNI-PFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       634 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  712 (1025)
                      ++++.++++++ .+|..+   .+++++|+|++|+|++.+ +..|.++++|+.|+|++|++.+..+..|..++.|      
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L------   80 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc------
Confidence            45666666666 566543   245666666666665433 4455666666666666666665555555554444      


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT  792 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip  792 (1025)
                                                               +.|+|++|++++..|..|.++++|++|+|++|+|++..|
T Consensus        81 -----------------------------------------~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          81 -----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             -----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             -----------------------------------------ceeeeccccccccCHHHHhCCCcccccccCCccccccCH
Confidence                                                     556666666666556666666666777777777776666


Q ss_pred             CCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcCCcccccCCC
Q 047190          793 PRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK  841 (1025)
Q Consensus       793 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~N~l~g~ip~  841 (1025)
                      ..|..+++|++|+|++|.+.+..+.... ...++.+.+..|.+.+..|.
T Consensus       120 ~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_         120 GSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred             HHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCCCh
Confidence            6677777777777777766644321110 12234445556666665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.1e-16  Score=160.32  Aligned_cols=172  Identities=21%  Similarity=0.182  Sum_probs=126.9

Q ss_pred             eecccCcCccCCCCCCCCCceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccc
Q 047190          518 IDVSSNQFDGPIPLLPPNVSSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFG  597 (1025)
Q Consensus       518 l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  597 (1025)
                      +++++++++......++++++|+|++|++++.++...+..+++|+.|++++|.+.+..+..|..+++|++|+|++|+++.
T Consensus        13 v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             EEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            56666666643333467888888888888776666555567788888888888888888888888888888888888888


Q ss_pred             cCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCccccc
Q 047190          598 EIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLC  677 (1025)
Q Consensus       598 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~  677 (1025)
                      ..|..|.++++|++|+|++|+|++..++.|..+++|++|+|++|.+....+...+  ...++.+.+..|.+....|..+ 
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p~~l-  169 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSKV-  169 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSSTTT-
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCChhh-
Confidence            7788888888888888888888888888888888888888888888754332222  2235566677777776666543 


Q ss_pred             ccCcccEEEcccccccc
Q 047190          678 YLSHIQILDLSLNNISG  694 (1025)
Q Consensus       678 ~l~~L~~L~Ls~N~l~~  694 (1025)
                        ..++.++|+.|.+.-
T Consensus       170 --~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         170 --RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             --TTSBGGGSCTTTCCC
T ss_pred             --cCCEeeecCHhhCcC
Confidence              456667777777763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=7.4e-16  Score=156.52  Aligned_cols=73  Identities=27%  Similarity=0.397  Sum_probs=50.3

Q ss_pred             eEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190          754 KIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~  832 (1025)
                      +.+++++|.+++.  ..+..+++|+.+++++|++++..|  ++++++|+.|||++|+++. +| .+..+++|++|++++
T Consensus       137 ~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc--cccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            4455555555432  235566777788888888776433  7778888888888888875 44 578888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=6.3e-16  Score=157.07  Aligned_cols=180  Identities=23%  Similarity=0.325  Sum_probs=113.4

Q ss_pred             EccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCcCc
Q 047190          565 DLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNGLS  644 (1025)
Q Consensus       565 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  644 (1025)
                      ++.++.+++.++.  ..+.+|+.|++++|.++...  .+..+++|++|++++|++++..  .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            4444555444332  23456666666666665432  3556666777777777666533  2556677777777777776


Q ss_pred             cccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCccccccccccc
Q 047190          645 GEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNL  724 (1025)
Q Consensus       645 g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  724 (1025)
                       .+|. +. .+++|+.|++++|.+..  ...+..++.++.+++++|.+++..  .+..+++                   
T Consensus       104 -~l~~-l~-~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~-------------------  157 (210)
T d1h6ta2         104 -DLSS-LK-DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT--VLSRLTK-------------------  157 (210)
T ss_dssp             -CGGG-GT-TCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGGGCTT-------------------
T ss_pred             -cccc-cc-ccccccccccccccccc--cccccccccccccccccccccccc--ccccccc-------------------
Confidence             4553 33 46777777777776653  235666777777777777766321  2222222                   


Q ss_pred             ccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEE
Q 047190          725 GLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFL  804 (1025)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L  804 (1025)
                                                  |+.+++++|++++..  .+.++++|++|+|++|+++. +| .+.++++|++|
T Consensus       158 ----------------------------L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L  205 (210)
T d1h6ta2         158 ----------------------------LDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVL  205 (210)
T ss_dssp             ----------------------------CSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEE
T ss_pred             ----------------------------ccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEE
Confidence                                        367777788777543  27788888888888888875 44 58888888888


Q ss_pred             eCCC
Q 047190          805 DLSR  808 (1025)
Q Consensus       805 dLs~  808 (1025)
                      +|++
T Consensus       206 ~Ls~  209 (210)
T d1h6ta2         206 ELFS  209 (210)
T ss_dssp             EEEE
T ss_pred             EccC
Confidence            8864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.5e-15  Score=151.24  Aligned_cols=179  Identities=23%  Similarity=0.336  Sum_probs=102.2

Q ss_pred             cEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCC
Q 047190          562 TYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKN  641 (1025)
Q Consensus       562 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  641 (1025)
                      ..+.++.+.+++.++  ...+.++++|++++|.++..  +.+..+++|++|++++|++++..|  +.++++|+.|++++|
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            344566666665433  23456677777777776632  235556666666666666654332  556666666666666


Q ss_pred             cCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccc
Q 047190          642 GLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYY  721 (1025)
Q Consensus       642 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  721 (1025)
                      .+. .++. +. .+++|+.|++++|.+....  .+..+++|+.|++++|+                              
T Consensus        95 ~~~-~~~~-l~-~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~------------------------------  139 (199)
T d2omxa2          95 QIA-DITP-LA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNT------------------------------  139 (199)
T ss_dssp             CCC-CCGG-GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC------------------------------
T ss_pred             ccc-cccc-cc-ccccccccccccccccccc--ccchhhhhHHhhhhhhh------------------------------
Confidence            655 3332 22 4555555555555554321  24444555555555444                              


Q ss_pred             cccccccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCc
Q 047190          722 YNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL  801 (1025)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L  801 (1025)
                                                               +.. + +.+..+++|+.|++++|++++..  .++++++|
T Consensus       140 -----------------------------------------l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L  174 (199)
T d2omxa2         140 -----------------------------------------ISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTL  174 (199)
T ss_dssp             -----------------------------------------CCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred             -----------------------------------------hcc-c-ccccccccccccccccccccCCc--cccCCCCC
Confidence                                                     432 1 23455566677777777776543  26777777


Q ss_pred             cEEeCCCCcCCCcCcccccCCCCCCEE
Q 047190          802 DFLDLSRNHFFGGIPSSLSRLRLLSVM  828 (1025)
Q Consensus       802 ~~LdLs~N~l~g~ip~~l~~l~~L~~L  828 (1025)
                      ++||+++|++++ +| .++++++|+.|
T Consensus       175 ~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            777777777775 33 46677777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.8e-15  Score=150.85  Aligned_cols=145  Identities=23%  Similarity=0.259  Sum_probs=116.6

Q ss_pred             ceeeccCCcccccccccccccCCcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEccc
Q 047190          537 SSLNLSKNKFSGSISFLCSISSHLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYN  616 (1025)
Q Consensus       537 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  616 (1025)
                      ....++.+.+++.+...   .++++++|++++|.++. + +.+..+++|++|++++|++++..|  ++.+++|++|++++
T Consensus        21 i~~~l~~~~~~~~~~~~---~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~   93 (199)
T d2omxa2          21 MKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHTTCSSTTSEECHH---HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHhCCCCCCCccCHH---HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccc
Confidence            34566777777654432   34789999999999984 3 358889999999999999986543  88999999999999


Q ss_pred             CcccccCCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccc
Q 047190          617 NSLSGGLPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGI  695 (1025)
Q Consensus       617 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  695 (1025)
                      |.+....  .+.++++|+.|++++|.+.. ++ .+. .+++|+.|++++|++.. + ..+..+++|+.|++++|++++.
T Consensus        94 n~~~~~~--~l~~l~~L~~L~l~~~~~~~-~~-~~~-~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2          94 NQIADIT--PLANLTNLTGLTLFNNQITD-ID-PLK-NLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGT-TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC
T ss_pred             ccccccc--cccccccccccccccccccc-cc-ccc-hhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC
Confidence            9987543  48899999999999999973 33 344 69999999999999974 3 3588889999999999888753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.6e-15  Score=156.45  Aligned_cols=181  Identities=24%  Similarity=0.257  Sum_probs=88.4

Q ss_pred             ccccccccccccCCCC-cchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeeccCCc-CCCCcchHHhhCCCCCC
Q 047190          137 GKLSELALSSAQFAGP-IPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLADCK-LSKFSNWVQVLSNLRSL  214 (1025)
Q Consensus       137 ~~L~~L~Ls~n~l~~~-~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L  214 (1025)
                      .+|++||++++.+++. ++..+.++++|++|+|++|.+ ....+..+..+++|++|++++|. +++ ..+...+.++++|
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l-~~~~~~~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC-CcHHHHHHhcCCCCcCccccccccccc-cccchhhHHHHhc
Confidence            3455555555444322 223334445555555555443 12223334444555555555532 222 1112223345555


Q ss_pred             CEEEcCCCC-CCCCCCCcccccccCCcccEEEccCC--CCCCCCch-hhhhcCCCCccEEEcCCC-CCCCCchhhhhCCC
Q 047190          215 TNLYLGYCD-LPPISTPSLLHINYSKSLEVIDLSNN--YLTNSIYP-WLFNVSSNLVDHIDLGSN-QLHGSIPLAFGHMA  289 (1025)
Q Consensus       215 ~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~-~l~~l~~~~L~~L~Ls~n-~l~~~~p~~~~~l~  289 (1025)
                      ++|++++|. ++..... ......+++|+.|+++++  .++..... ....+++  |++|++++| .+++.....+.+++
T Consensus       124 ~~L~ls~c~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~--L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN--LVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             CEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT--CSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccccccccccccch-hhhcccccccchhhhccccccccccccccccccccc--ccccccccccCCCchhhhhhcccC
Confidence            555555542 2111000 011122255666666654  23322112 2234455  777777765 35655666677777


Q ss_pred             CCcEEEccCC-CCCC-cchhhcCCCCccEEEeecC
Q 047190          290 SLRHLDLLSN-QLRE-VPKFLGNMSSLKRLVFSYN  322 (1025)
Q Consensus       290 ~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~L~Ls~n  322 (1025)
                      +|++|++++| .+++ ....++++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777777774 4554 3455677778888888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-14  Score=151.68  Aligned_cols=227  Identities=18%  Similarity=0.181  Sum_probs=134.7

Q ss_pred             ccEEEccCccccccCCCcccCCCCCCEEEcCCCccccc-CCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCC
Q 047190          561 LTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGE-IPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLG  639 (1025)
Q Consensus       561 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  639 (1025)
                      ...+.++...+...... .....+|++||+++|.++.. ++..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            44556665555533332 23345788888888877643 23445667888888888888777777777778888888888


Q ss_pred             CC-cCccccChhhhhcCCCCcEEEeecC-cCccc-Ccccccc-cCcccEEEccccc--cccc-cCccccCcccccccccc
Q 047190          640 KN-GLSGEIPTWIGESLPNLVVLSLRSN-KFHGN-IPFQLCY-LSHIQILDLSLNN--ISGI-IPKCFHNFTAMTKEKSS  712 (1025)
Q Consensus       640 ~N-~l~g~ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~-l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~l~~~~~~  712 (1025)
                      +| .+++.--..+.+.+++|++|+++++ .++.. +...+.. .++|+.|+++++.  ++.. +....            
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~------------  171 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV------------  171 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH------------
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccc------------
Confidence            75 4553222233446788888888875 34321 1222333 3577888777542  2211 00000            


Q ss_pred             CcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccC-CCCCcChhhHhhcccCCeEeccC-cccccc
Q 047190          713 NLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSN-KLGGKVLEEIMDLVGLVALNLSN-NNLTGQ  790 (1025)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N-~l~~~ip~~~~~l~~L~~L~Ls~-N~l~g~  790 (1025)
                                                         ..++.|+.||+++| .+++..+..+..++.|++|+|++ +.+++.
T Consensus       172 -----------------------------------~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         172 -----------------------------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             -----------------------------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             -----------------------------------cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence                                               11334577777764 46666677777777788888877 467666


Q ss_pred             CCCCCCCCCCccEEeCCCCcCC-CcCcccccCCCCCCEEECcCCcccccC
Q 047190          791 ITPRIGQLKSLDFLDLSRNHFF-GGIPSSLSRLRLLSVMDLSYNNFSGKI  839 (1025)
Q Consensus       791 ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~Ldls~N~l~g~i  839 (1025)
                      ....++++++|+.|+++++ ++ +.++.-...++.   |++..+++++..
T Consensus       217 ~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~---L~i~~~~ls~~~  262 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH---LQINCSHFTTIA  262 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT---SEESCCCSCCTT
T ss_pred             HHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc---ccccCccCCCCC
Confidence            6666777777888887776 33 222222223343   345566666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=2.7e-14  Score=157.18  Aligned_cols=239  Identities=16%  Similarity=0.165  Sum_probs=151.8

Q ss_pred             CCcccEEEccCcccccc----CCCcccCCCCCCEEEcCCCccccc----------CCcccccccCCCEEEcccCccccc-
Q 047190          558 SHLLTYLDLSNNLLSGR----LPDCWFQFDSLAILNLANNSFFGE----------IPDSMSFLRSIGSLSLYNNSLSGG-  622 (1025)
Q Consensus       558 ~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~L~~N~l~~~-  622 (1025)
                      ...|+.|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|+.|+|++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            35677777877776533    233455667788888877654321          112244567788888888887653 


Q ss_pred             ---CCccccCCCCccEEeCCCCcCccccChhh------------hhcCCCCcEEEeecCcCcccC----cccccccCccc
Q 047190          623 ---LPSFFMNGSQLTLMDLGKNGLSGEIPTWI------------GESLPNLVVLSLRSNKFHGNI----PFQLCYLSHIQ  683 (1025)
Q Consensus       623 ---~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~------------~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~  683 (1025)
                         +...+..+++|+.|++++|.+...-...+            ....+.|+.+.+++|++....    ...+...+.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               33445567888888888887752211111            124677888888888876432    33455677888


Q ss_pred             EEEccccccccccCccccCccccccccccCcccccccccccccccccceeEeecccCCccceeeccccceeEEEcccCCC
Q 047190          684 ILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLGLRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKL  763 (1025)
Q Consensus       684 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l  763 (1025)
                      .|+|++|.++..-...+  +.                                        .+....+.++.|||++|.+
T Consensus       190 ~L~L~~n~i~~~g~~~~--l~----------------------------------------~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHL--LL----------------------------------------EGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             EEECCSSCCCHHHHHHH--HH----------------------------------------TTGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccc--hh----------------------------------------hhhcchhhhcccccccccc
Confidence            88888888763200000  00                                        0011233457889999988


Q ss_pred             CCc----ChhhHhhcccCCeEeccCccccccCCCCC----C--CCCCccEEeCCCCcCCCc----Cccccc-CCCCCCEE
Q 047190          764 GGK----VLEEIMDLVGLVALNLSNNNLTGQITPRI----G--QLKSLDFLDLSRNHFFGG----IPSSLS-RLRLLSVM  828 (1025)
Q Consensus       764 ~~~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~----~--~l~~L~~LdLs~N~l~g~----ip~~l~-~l~~L~~L  828 (1025)
                      +..    +...+..++.|++|+|++|.|++.-...+    .  ....|++||+++|+++..    +...+. +.+.|++|
T Consensus       228 ~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L  307 (344)
T d2ca6a1         228 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL  307 (344)
T ss_dssp             HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEE
Confidence            643    44556788899999999999876522222    2  236799999999998753    233443 46789999


Q ss_pred             ECcCCccccc
Q 047190          829 DLSYNNFSGK  838 (1025)
Q Consensus       829 dls~N~l~g~  838 (1025)
                      ++++|++...
T Consensus       308 ~l~~N~~~~~  317 (344)
T d2ca6a1         308 ELNGNRFSEE  317 (344)
T ss_dssp             ECTTSBSCTT
T ss_pred             ECCCCcCCCc
Confidence            9999998643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.2e-13  Score=123.39  Aligned_cols=106  Identities=25%  Similarity=0.238  Sum_probs=75.6

Q ss_pred             cEEEccCCCCCCCCCcccccCcccccccccccccCCCCcchhccCCCCCCEEecccCCCCCCCCchhcccCCCCCeeecc
Q 047190          115 TYLDLSWNNFSGSPIPEFIGSLGKLSELALSSAQFAGPIPHQLGNLSKLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLA  194 (1025)
Q Consensus       115 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~i~~~~~~~~l~~l~~L~~L~L~  194 (1025)
                      |+|+|++|+++.  ++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|.+..   .+.+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~---l~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---VDGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---CGGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc---cCccccccccCeEECC
Confidence            578888888874  34 3677888888888888887 467777888888888888887632   2457777788888888


Q ss_pred             CCcCCCCcchHHhhCCCCCCCEEEcCCCCCCCCC
Q 047190          195 DCKLSKFSNWVQVLSNLRSLTNLYLGYCDLPPIS  228 (1025)
Q Consensus       195 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  228 (1025)
                      +|+++.++.+ ..+..+++|++|++++|.++...
T Consensus        74 ~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          74 NNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCccCCCCCc-hhhcCCCCCCEEECCCCcCCcCc
Confidence            8877766542 44666777777777777665443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.6e-13  Score=128.85  Aligned_cols=123  Identities=20%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             CcccEEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          559 HLLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       559 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ..+++|+|++|+|+. ++..+..+++|+.|+|++|.++..  +.+..+++|++|++++|+++...+..+..+++|+.|++
T Consensus        18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            457778888888773 466666777788888888877743  34677777777777777777666666667777777777


Q ss_pred             CCCcCccccCh--hhhhcCCCCcEEEeecCcCcccC---cccccccCcccEEE
Q 047190          639 GKNGLSGEIPT--WIGESLPNLVVLSLRSNKFHGNI---PFQLCYLSHIQILD  686 (1025)
Q Consensus       639 s~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~  686 (1025)
                      ++|+++ .++.  .+. .+++|++|++++|+++...   +..+..+++|++||
T Consensus        95 ~~N~i~-~~~~l~~l~-~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccc-ccccccccc-cccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777776 4443  333 5777777777777776432   12466677777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.4e-13  Score=128.32  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             ccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEcccccccc
Q 047190          627 FMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISG  694 (1025)
Q Consensus       627 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  694 (1025)
                      |.++.+|++|+|++|+|+ .+|... ..+++|++|+|++|+++.. + .+..+++|++|++++|+++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~-~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGG-GGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCE
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccc-cccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccC
Confidence            445555666666666665 444332 2455666666666655532 2 34555555555555555553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=8.4e-13  Score=144.97  Aligned_cols=261  Identities=18%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             cchhccCCCCCCEEecccCCCCCCC---CchhcccCCCCCeeeccCCcCCCCc--------chHHhhCCCCCCCEEEcCC
Q 047190          153 IPHQLGNLSKLQVLDLRFNNLFSSG---NLDWLSYLSSLRYLDLADCKLSKFS--------NWVQVLSNLRSLTNLYLGY  221 (1025)
Q Consensus       153 ~p~~l~~L~~L~~L~Ls~n~i~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~--------~~~~~l~~l~~L~~L~L~~  221 (1025)
                      +...+.+...|+.|+|++|.+...+   ....+...++|+.|+++++......        .+...+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            4455677788888888888762211   1123556778888888776543321        1334455666677777776


Q ss_pred             CCCCCCCCCccc-ccccCCcccEEEccCCCCCCCCchhhhhcCCCCccEEEcCCCCCCCCchhhhhCCCCCcEEEccCCC
Q 047190          222 CDLPPISTPSLL-HINYSKSLEVIDLSNNYLTNSIYPWLFNVSSNLVDHIDLGSNQLHGSIPLAFGHMASLRHLDLLSNQ  300 (1025)
Q Consensus       222 n~l~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  300 (1025)
                      |.+.......+. .....++|++|++++|.+.......+...    +..+         .........+.|+.+++++|.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~----l~~~---------~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA----LQEL---------AVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH----HHHH---------HHHHHHHTCCCCCEEECCSSC
T ss_pred             cccccccccchhhhhcccccchheeccccccccccccccccc----cccc---------ccccccccCcccceeeccccc
Confidence            666543221110 11112555556555555432111111000    0000         000111234556666666666


Q ss_pred             CCC-----cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEcccccccccc-----CCCCCCCCCcE
Q 047190          301 LRE-----VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEITGTI-----PDLGGFPSLQI  370 (1025)
Q Consensus       301 l~~-----lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~~~~-----p~l~~l~~L~~  370 (1025)
                      ++.     +...+...+.|++|++++|.+.......  .+...+..+++|+.|+|++|.++...     ..+..+++|++
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~--~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH--HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccccccccchhhhhhhhccccccccccccccccc--chhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            543     2334455566666666666655321110  01111122336666666666654321     11455666666


Q ss_pred             EEeecccccCcccccc----cc--cCCcceeeccCccccccc----chhhhcCCCCCcEEECCCCccc
Q 047190          371 LSLENNRLTGTISKSI----GQ--LSKLELLLLSGNSLRGVI----SEALFSNLSSLDTLQLSDNSLT  428 (1025)
Q Consensus       371 L~L~~n~l~~~~p~~l----~~--l~~L~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~  428 (1025)
                      |++++|.+++.....+    ..  .+.|++|++++|.+....    ......+.++|++|++++|.+.
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            6776666654322222    21  245777777777665321    1111124566777777777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.3e-12  Score=116.58  Aligned_cols=100  Identities=26%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             EEEccCccccccCCCcccCCCCCCEEEcCCCcccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeCCCCc
Q 047190          563 YLDLSNNLLSGRLPDCWFQFDSLAILNLANNSFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDLGKNG  642 (1025)
Q Consensus       563 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  642 (1025)
                      +|++++|+++ .++ .+.++++|++|++++|.++ .+|..++.+++|++|++++|.+++. | .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            4555555555 222 2455555555555555554 3344455555555555555555532 2 25555555555555555


Q ss_pred             CccccC--hhhhhcCCCCcEEEeecCcCc
Q 047190          643 LSGEIP--TWIGESLPNLVVLSLRSNKFH  669 (1025)
Q Consensus       643 l~g~ip--~~~~~~l~~L~~L~L~~N~l~  669 (1025)
                      ++ .+|  ..+. .+++|++|++++|+++
T Consensus        77 i~-~~~~~~~l~-~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQ-QSAAIQPLV-SCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CC-SSSTTGGGG-GCTTCCEEECTTSGGG
T ss_pred             cC-CCCCchhhc-CCCCCCEEECCCCcCC
Confidence            54 232  1222 3555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=5.9e-13  Score=132.85  Aligned_cols=131  Identities=24%  Similarity=0.292  Sum_probs=79.9

Q ss_pred             ccChhhhhcCCCCcEEEeecCcCcccCcccccccCcccEEEccccccccccCccccCccccccccccCcccccccccccc
Q 047190          646 EIPTWIGESLPNLVVLSLRSNKFHGNIPFQLCYLSHIQILDLSLNNISGIIPKCFHNFTAMTKEKSSNLSIISNYYYNLG  725 (1025)
Q Consensus       646 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  725 (1025)
                      .+|..+. .+++|++|+|++|+|+. ++ .+..+++|+.|+|++|.++ .+|..+..++                     
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~---------------------   93 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD---------------------   93 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHH---------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccc---------------------
Confidence            3445554 46667777777776663 33 4666677777777777665 2332222212                     


Q ss_pred             cccccceeEeecccCCccceeeccccceeEEEcccCCCCCcChhhHhhcccCCeEeccCccccccCC-CCCCCCCCccEE
Q 047190          726 LRGMLMPLIFFDTWKGGQYEYKSILGLIKIIDLSSNKLGGKVLEEIMDLVGLVALNLSNNNLTGQIT-PRIGQLKSLDFL  804 (1025)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~L  804 (1025)
                                                .|+.|++++|+++..  ..+..+++|+.|+|++|+++.... ..++.+++|+.|
T Consensus        94 --------------------------~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          94 --------------------------TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             --------------------------HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             --------------------------ccccccccccccccc--ccccccccccccccccchhccccccccccCCCcccee
Confidence                                      236677777777642  346777777777777777765422 346777777777


Q ss_pred             eCCCCcCCCcCccc----------ccCCCCCCEEE
Q 047190          805 DLSRNHFFGGIPSS----------LSRLRLLSVMD  829 (1025)
Q Consensus       805 dLs~N~l~g~ip~~----------l~~l~~L~~Ld  829 (1025)
                      +|++|.++...+..          +..+++|+.||
T Consensus       146 ~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77777776543332          45677777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.9e-11  Score=114.27  Aligned_cols=107  Identities=17%  Similarity=0.074  Sum_probs=90.1

Q ss_pred             cccEEEccCccccccCCCcccCCCCCCEEEcCCC-cccccCCcccccccCCCEEEcccCcccccCCccccCCCCccEEeC
Q 047190          560 LLTYLDLSNNLLSGRLPDCWFQFDSLAILNLANN-SFFGEIPDSMSFLRSIGSLSLYNNSLSGGLPSFFMNGSQLTLMDL  638 (1025)
Q Consensus       560 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  638 (1025)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...+..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3567888888887 56777888899999999766 488777778899999999999999999888888999999999999


Q ss_pred             CCCcCccccChhhhhcCCCCcEEEeecCcCc
Q 047190          639 GKNGLSGEIPTWIGESLPNLVVLSLRSNKFH  669 (1025)
Q Consensus       639 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~  669 (1025)
                      ++|+++ .+|..++. ..+|+.|+|++|++.
T Consensus        88 s~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            999998 88887774 557999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=2.5e-12  Score=128.16  Aligned_cols=52  Identities=25%  Similarity=0.312  Sum_probs=33.3

Q ss_pred             eEEEcccCCCCCcCh-hhHhhcccCCeEeccCccccccCCCC----------CCCCCCccEEe
Q 047190          754 KIIDLSSNKLGGKVL-EEIMDLVGLVALNLSNNNLTGQITPR----------IGQLKSLDFLD  805 (1025)
Q Consensus       754 ~~LdLs~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~Ld  805 (1025)
                      +.|||++|+++.... ..+..+++|+.|+|++|.+....+..          +..+++|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            555666666554322 35667777778888887777655543          45577888877

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1e-10  Score=111.29  Aligned_cols=84  Identities=18%  Similarity=0.065  Sum_probs=67.4

Q ss_pred             eEEEcccCC-CCCcChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCcccccCCCCCCEEECcC
Q 047190          754 KIIDLSSNK-LGGKVLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSSLSRLRLLSVMDLSY  832 (1025)
Q Consensus       754 ~~LdLs~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~Ldls~  832 (1025)
                      +.|++++|+ ++...+..|.++++|+.|+|++|+|++..|..|..+++|++|||++|+|+...+..+.. ..|+.|+|++
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~  112 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSG  112 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCC
Confidence            667776554 77666777888889999999999999888888999999999999999998655555544 4699999999


Q ss_pred             Cccccc
Q 047190          833 NNFSGK  838 (1025)
Q Consensus       833 N~l~g~  838 (1025)
                      |++.+.
T Consensus       113 Np~~C~  118 (156)
T d2ifga3         113 NPLHCS  118 (156)
T ss_dssp             SCCCCC
T ss_pred             CcccCC
Confidence            998753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8e-08  Score=91.45  Aligned_cols=83  Identities=20%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             cccccCCCEEEcccCccccc--CCccccCCCCccEEeCCCCcCccccChhhhhcCCCCcEEEeecCcCcccCcc------
Q 047190          603 MSFLRSIGSLSLYNNSLSGG--LPSFFMNGSQLTLMDLGKNGLSGEIPTWIGESLPNLVVLSLRSNKFHGNIPF------  674 (1025)
Q Consensus       603 ~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~------  674 (1025)
                      +..+++|++|+|++|+|+..  ++..+..+++|+.|+|++|+++ .+++...-....|++|++++|++......      
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34456666666666666543  2344556677777777777776 44442221345567777777777654432      


Q ss_pred             -cccccCcccEEE
Q 047190          675 -QLCYLSHIQILD  686 (1025)
Q Consensus       675 -~l~~l~~L~~L~  686 (1025)
                       .+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence             244566777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.2e-07  Score=90.11  Aligned_cols=77  Identities=23%  Similarity=0.168  Sum_probs=37.8

Q ss_pred             eeEEEcccCCCCCc--ChhhHhhcccCCeEeccCccccccCCCCCCCCCCccEEeCCCCcCCCcCccc-------ccCCC
Q 047190          753 IKIIDLSSNKLGGK--VLEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSRNHFFGGIPSS-------LSRLR  823 (1025)
Q Consensus       753 l~~LdLs~N~l~~~--ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-------l~~l~  823 (1025)
                      |+.||||+|+++..  ++..+..+++|+.|+|++|+++...+-.+.....|+.|++++|.+++.....       +..++
T Consensus        67 L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P  146 (162)
T d1koha1          67 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFP  146 (162)
T ss_dssp             CCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTST
T ss_pred             CCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCC
Confidence            34455555555432  2334555556666666666665433322222334566666666665443321       33455


Q ss_pred             CCCEEE
Q 047190          824 LLSVMD  829 (1025)
Q Consensus       824 ~L~~Ld  829 (1025)
                      +|++||
T Consensus       147 ~L~~LD  152 (162)
T d1koha1         147 KLLRLD  152 (162)
T ss_dssp             TCCEET
T ss_pred             CCCEEC
Confidence            555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=4.9e-05  Score=71.91  Aligned_cols=41  Identities=20%  Similarity=0.090  Sum_probs=19.8

Q ss_pred             hhCCCCCcEEEccCCCCCC-----cchhhcCCCCccEEEeecCCCC
Q 047190          285 FGHMASLRHLDLLSNQLRE-----VPKFLGNMSSLKRLVFSYNELR  325 (1025)
Q Consensus       285 ~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~  325 (1025)
                      +...+.|++|+|++|.++.     +-..+...+.|++|++++|.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            3344555555555555543     1233444455555555555433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.25  E-value=0.00017  Score=68.05  Aligned_cols=18  Identities=6%  Similarity=0.217  Sum_probs=8.0

Q ss_pred             hcCCCCccEEEeecCCCC
Q 047190          308 LGNMSSLKRLVFSYNELR  325 (1025)
Q Consensus       308 l~~l~~L~~L~Ls~n~l~  325 (1025)
                      +...+.|++|++++|.+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCccceeeccccccc
Confidence            333444444444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.63  E-value=0.0002  Score=67.43  Aligned_cols=65  Identities=14%  Similarity=0.146  Sum_probs=35.0

Q ss_pred             cCCCCCcEEEccC-CCCCCCC---CcccccCcccccccccccccCCCC----cchhccCCCCCCEEecccCCC
Q 047190          109 LKLQHLTYLDLSW-NNFSGSP---IPEFIGSLGKLSELALSSAQFAGP----IPHQLGNLSKLQVLDLRFNNL  173 (1025)
Q Consensus       109 ~~l~~L~~L~Ls~-n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~L~~L~~L~Ls~n~i  173 (1025)
                      .+.+.|++|+|++ +.++...   +-..+...++|++|+|++|.++..    +-..+...+.++.+++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            4556777777776 3444221   223344556666666666665533    223334455666666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.47  E-value=0.00039  Score=65.40  Aligned_cols=68  Identities=13%  Similarity=0.126  Sum_probs=32.0

Q ss_pred             hCCCCCcEEEccC-CCCCC-----cchhhcCCCCccEEEeecCCCCCcchHHhhhcCCCCCCCCCCcEEEccccccc
Q 047190          286 GHMASLRHLDLLS-NQLRE-----VPKFLGNMSSLKRLVFSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAFNEIT  356 (1025)
Q Consensus       286 ~~l~~L~~L~Ls~-n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~l~  356 (1025)
                      .+.++|++|++++ +.++.     +-..+...++|++|++++|.+.......+...   +...+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~---l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM---LKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH---HHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHH---Hhhcccchhhhhcccccc
Confidence            3445666666655 33432     22344455666666666666554332222211   011225555555555543

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=2.5e-05  Score=72.23  Aligned_cols=70  Identities=11%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             hHHHHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCcccc
Q 047190          927 YYNFLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVP  995 (1025)
Q Consensus       927 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f  995 (1025)
                      |..|..++.+||.+++++.||+..+.++.|+++||+           +++++|+++|+|+|.+|++    ++|++++-..
T Consensus         9 FiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~----s~wc~~E~~~   84 (149)
T d1fyxa_           9 FVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVK----SEWCKYELDF   84 (149)
T ss_dssp             EEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHH----HHTHHHHSCC
T ss_pred             EEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCcccc----ccchHHHHHH
Confidence            445567789999999999999877889999999988           6899999999999999999    7777777776


Q ss_pred             cccCC
Q 047190          996 AEQNS 1000 (1025)
Q Consensus       996 ~~~~~ 1000 (1025)
                      +.+..
T Consensus        85 a~~~~   89 (149)
T d1fyxa_          85 SHFRL   89 (149)
T ss_dssp             SCCTT
T ss_pred             HHHHH
Confidence            64443

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.00011  Score=68.71  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             HHHhhhheeehhhhHHHHHHHHhhhccccccCc-----------cccccchhhhhhhhhccceeeeccCCCCCccccccc
Q 047190          930 FLTRVKDWLYVEAVVNIAKLQRRIQAAPEVHGW-----------HSLDQSKLLLLVYLRKILLIRTFSNLSPCETVPAEQ  998 (1025)
Q Consensus       930 ~~~~~~~~~~~~~~~~l~~~~~~~~lc~~~rd~-----------~si~~s~~~~~v~s~~~~r~~t~~e~~~~t~~f~~~  998 (1025)
                      |...+.+||..++++.||+  +.++.|+++||+           ++|++||++|+|+|++|++    ++|++++-..+-+
T Consensus        19 ys~~D~~~v~~~L~~~Le~--~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~----s~w~~~E~~~a~~   92 (161)
T d1fyva_          19 YSGHDSFWVKNELLPNLEK--EGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQ----SEWCHYELYFAHH   92 (161)
T ss_dssp             CCGGGHHHHHHTHHHHHHT--TTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHH----HTSHHHHHHTTSC
T ss_pred             cChhHHHHHHHHHHHHHHh--CCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCcccc----ChHHHHHHHHHHH
Confidence            3457788999999999997  579999999999           6899999999999999999    8888888777654


Q ss_pred             CC
Q 047190          999 NS 1000 (1025)
Q Consensus       999 ~~ 1000 (1025)
                      ..
T Consensus        93 ~~   94 (161)
T d1fyva_          93 NL   94 (161)
T ss_dssp             CC
T ss_pred             HH
Confidence            43