Citrus Sinensis ID: 047232

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccEEEEEEcccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEcccEEEEEEEEccccccccEEEEccccccccccccccccccHHHHHHHHHHcccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEccccccccccEEEEEEccccccEEEEEccEEEEccccccEEEEEccHHHHHHccccEEEEEEEEEEEccccccEccccHHHcccccccccccccHHHHHHHHHHHcccccccHHHccc
DIIVDHAKKTTELALTLFELISEALGLnanrlkdmdcAEGLFLlghyypacpepeltmgtdshadTSFLTVLLQDRLgglqvlhenewvnvtpIHGALVVNLGdmmqanvgprvSVACFFRshfqsekarlygpinellseenppiykeITVKEYLSHsysigldgtspldhfkl
diivdhakktTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSysigldgtspldhfkl
DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL
*****HAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGL***********
DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL
DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL
DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLD**KL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query175 2.2.26 [Sep-21-2011]
Q84MB3365 1-aminocyclopropane-1-car yes no 0.994 0.476 0.534 9e-54
O04847401 Deacetoxyvindoline 4-hydr N/A no 1.0 0.436 0.520 1e-52
Q8H1S4369 1-aminocyclopropane-1-car no no 0.994 0.471 0.505 2e-49
Q9LTH7366 1-aminocyclopropane-1-car no no 0.994 0.475 0.492 2e-49
P93821345 1-aminocyclopropane-1-car no no 0.994 0.504 0.471 3e-49
Q9LTH8364 1-aminocyclopropane-1-car no no 0.994 0.478 0.492 4e-49
P93824360 1-aminocyclopropane-1-car no no 0.982 0.477 0.5 8e-49
Q9LSW7365 1-aminocyclopropane-1-car no no 0.994 0.476 0.481 3e-47
Q9LSW6362 1-aminocyclopropane-1-car no no 0.868 0.419 0.520 4e-46
Q9C5K7369 1-aminocyclopropane-1-car no no 0.994 0.471 0.489 7e-46
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function desciption
 Score =  209 bits (531), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 134/191 (70%), Gaps = 17/191 (8%)

Query: 1   DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGT 60
           +++++++K+  +L   LFEL+SEALGLN N LKDMDC   L LLGHYYP CP+P+LT+G 
Sbjct: 176 EMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGL 235

Query: 61  DSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQ------------- 107
             H+D SFLT+LLQD +GGLQVLH+  WV+V P+ GALVVN+GD++Q             
Sbjct: 236 TKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHR 295

Query: 108 --ANV-GPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGL 164
             ANV GPR+SVACFF S+  +   R+YGPI E+LSEENPP Y++ T+ EY     S G 
Sbjct: 296 VLANVAGPRISVACFFSSYLMA-NPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGF 354

Query: 165 DGTSPLDHFKL 175
           DGTS L + K+
Sbjct: 355 DGTSGLLYLKI 365

Arabidopsis thaliana (taxid: 3702)
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|P93821|ACCH7_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 7 OS=Arabidopsis thaliana GN=At1g04380 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
225433035 373 PREDICTED: 1-aminocyclopropane-1-carboxy 1.0 0.469 0.617 2e-65
147822811 373 hypothetical protein VITISV_042886 [Viti 1.0 0.469 0.617 2e-65
296083612 387 unnamed protein product [Vitis vinifera] 1.0 0.452 0.617 9e-65
147787952 373 hypothetical protein VITISV_000872 [Viti 1.0 0.469 0.607 9e-64
359477763 684 PREDICTED: 1-aminocyclopropane-1-carboxy 1.0 0.255 0.602 2e-63
296083614207 unnamed protein product [Vitis vinifera] 1.0 0.845 0.602 4e-63
147845654 373 hypothetical protein VITISV_017626 [Viti 1.0 0.469 0.602 5e-63
357515479 381 1-aminocyclopropane-1-carboxylate oxidas 1.0 0.459 0.596 7e-63
296083613207 unnamed protein product [Vitis vinifera] 1.0 0.845 0.602 3e-62
224117868 368 predicted protein [Populus trichocarpa] 1.0 0.475 0.619 3e-62
>gi|225433035|ref|XP_002284663.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 148/191 (77%), Gaps = 16/191 (8%)

Query: 1   DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGT 60
           DI+++++++  +L LTLFEL+SEALGLN N LKDM+CAEGLFLLGHYYPACPEPELT+GT
Sbjct: 183 DIVMEYSEQVMKLGLTLFELLSEALGLNPNHLKDMECAEGLFLLGHYYPACPEPELTLGT 242

Query: 61  DSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQ------------- 107
            SH D+ F T+LLQD++GGLQVLHE++WV+V PI GALV+N+GD++Q             
Sbjct: 243 SSHTDSDFFTILLQDQMGGLQVLHEDQWVDVPPIPGALVINMGDLLQLVSNDRFKSIFHR 302

Query: 108 ---ANVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGL 164
               NVGPR+SVA FFR   +   +RLYGPI ELLSEENPPIY+E TV E+L++ +S GL
Sbjct: 303 VLAKNVGPRISVASFFRKSHRENNSRLYGPIKELLSEENPPIYRETTVDEFLTYYFSKGL 362

Query: 165 DGTSPLDHFKL 175
           DG S L HFKL
Sbjct: 363 DGNSSLPHFKL 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147822811|emb|CAN66006.1| hypothetical protein VITISV_042886 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083612|emb|CBI23601.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787952|emb|CAN67227.1| hypothetical protein VITISV_000872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477763|ref|XP_002284676.2| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083614|emb|CBI23603.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845654|emb|CAN80594.1| hypothetical protein VITISV_017626 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357515479|ref|XP_003628028.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] gi|355522050|gb|AET02504.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|296083613|emb|CBI23602.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117868|ref|XP_002317688.1| predicted protein [Populus trichocarpa] gi|222860753|gb|EEE98300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.994 0.476 0.534 3.6e-50
TAIR|locus:2018274345 AT1G04380 [Arabidopsis thalian 0.994 0.504 0.471 7.9e-46
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.994 0.478 0.492 1.3e-45
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.994 0.475 0.492 1.6e-45
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.988 0.473 0.489 6.4e-44
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 1.0 0.474 0.481 4.5e-43
TAIR|locus:2176466362 AT5G43450 [Arabidopsis thalian 0.982 0.475 0.481 1.2e-42
TAIR|locus:2040045359 AT2G25450 [Arabidopsis thalian 0.611 0.298 0.504 4.6e-42
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.977 0.475 0.497 6.6e-42
TAIR|locus:2824199366 AT1G06645 [Arabidopsis thalian 1.0 0.478 0.465 8.4e-42
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 102/191 (53%), Positives = 134/191 (70%)

Query:     1 DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGT 60
             +++++++K+  +L   LFEL+SEALGLN N LKDMDC   L LLGHYYP CP+P+LT+G 
Sbjct:   176 EMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGL 235

Query:    61 DSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQ------------- 107
               H+D SFLT+LLQD +GGLQVLH+  WV+V P+ GALVVN+GD++Q             
Sbjct:   236 TKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHR 295

Query:   108 --ANV-GPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIGL 164
               ANV GPR+SVACFF S+  +   R+YGPI E+LSEENPP Y++ T+ EY     S G 
Sbjct:   296 VLANVAGPRISVACFFSSYLMANP-RVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGF 354

Query:   165 DGTSPLDHFKL 175
             DGTS L + K+
Sbjct:   355 DGTSGLLYLKI 365
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2018274 AT1G04380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176466 AT5G43450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040045 AT2G25450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00111330
hypothetical protein (368 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-35
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-34
PLN02947374 PLN02947, PLN02947, oxidoreductase 8e-32
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 5e-31
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-30
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 4e-29
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-28
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-28
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-28
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 7e-28
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-23
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 7e-22
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-21
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-20
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-20
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 7e-19
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-17
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 8e-16
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 8e-15
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 5e-14
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-13
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 6e-12
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-11
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-08
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-06
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 6e-05
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  125 bits (316), Expect = 2e-35
 Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 21/191 (10%)

Query: 1   DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLGHYYPACPEPELTMGT 60
           +I+  + ++  EL   L E ISE+LGL  + +K++   +G  +  +YYP CPEPELT G 
Sbjct: 150 EIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGL 209

Query: 61  DSHADTSFLTVLLQD-RLGGLQVLHENEWVNVTPIHGALVVNLGDMMQA----------- 108
            +H D + LT+LLQD ++ GLQVL + +WV V P  GA V+N+GD +QA           
Sbjct: 210 PAHTDPNALTILLQDQQVAGLQVLKDGKWVAVNPHPGAFVINIGDQLQALSNGRYKSVWH 269

Query: 109 ----NVG-PRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYSIG 163
               N    R+SVA F       + A +  P  +L  +    +Y++ T  EY    +S  
Sbjct: 270 RAVVNTDKERMSVASFL---CPCDDAVI-SPAKKLTDDGTAAVYRDFTYAEYYKKFWSRN 325

Query: 164 LDGTSPLDHFK 174
           LD    L+ FK
Sbjct: 326 LDQEHCLELFK 336

Length = 337
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 175
PLN02216357 protein SRG1 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02997325 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.82
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 95.97
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.1
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.97
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 93.67
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 90.01
TIGR02466201 conserved hypothetical protein. This family consis 87.56
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 86.34
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 82.99
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.5e-48  Score=326.17  Aligned_cols=171  Identities=32%  Similarity=0.611  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC-CceeeEeeeCCCCCCCCCCccccCCCCCCceEEEec-CCCC
Q 047232            1 DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCA-EGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQ-DRLG   78 (175)
Q Consensus         1 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~-~~~~l~~~~Yp~~~~~~~~~g~~~HtD~g~lTiL~q-d~~~   78 (175)
                      +++++|+++|.+++.+|++++|++||+++++|.+.+.. ..+.+|++|||||++++..+|+++|||+|+||||+| ++++
T Consensus       169 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~  248 (357)
T PLN02216        169 DTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVE  248 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCC
Confidence            36899999999999999999999999999999887654 346799999999998888999999999999999999 5699


Q ss_pred             CeeEeeCCeEEEEeecCCeEEEEecccccc----------------CCCCeEEEEEeeccCCCCCCceEeecCccccCCC
Q 047232           79 GLQVLHENEWVNVTPIHGALVVNLGDMMQA----------------NVGPRVSVACFFRSHFQSEKARLYGPINELLSEE  142 (175)
Q Consensus        79 GLqV~~~g~W~~V~p~~~~~vVniGd~le~----------------~~~~R~Si~~F~~p~~d~~~~~~i~pl~~~~~~~  142 (175)
                      ||||+++|+|++|+|+||++|||+||+||+                ..++|||++||+.|+.    |++|+|+|++++++
T Consensus       249 GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~----d~~i~p~~~lv~~~  324 (357)
T PLN02216        249 GLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGM----GKEIGPAKSLVERQ  324 (357)
T ss_pred             ceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCC----CCeEeCcHHHcCCC
Confidence            999999999999999999999999999998                3578999999999999    89999999999999


Q ss_pred             CCCCCCCccHHHHHHHHHhcCCCCCCCccccCC
Q 047232          143 NPPIYKEITVKEYLSHSYSIGLDGTSPLDHFKL  175 (175)
Q Consensus       143 ~~~~y~~~~~~dy~~~~~~~~~~~~~~l~~~~~  175 (175)
                      +|++|++++++||+..+++..+.++..++.++|
T Consensus       325 ~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        325 KAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            999999999999999999999989999999886

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-15
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-15
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 5e-15
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-14
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-06
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 5   DHAKKTTELALTLFELISEALGLNANRL-KDMDCAEGLFLLG--HYYPACPEPELTMGTD 61
           ++AK    LA  +F+ +S  LGL  +RL K++   E L L    +YYP CP+PEL +G +
Sbjct: 170 EYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVE 229
Query: 62  SHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQANVGPRVSVACFFR 121
           +H D S LT +L + + GLQ+ +E +WV    +  ++V+++GD ++     +   +   R
Sbjct: 230 AHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK-SILHR 288
Query: 122 SHFQSEKARL--------------YGPINELLSEENPPIYKEITVKEYLSHS 159
                EK R+                P+ E++S E+P  +   T  +++ H 
Sbjct: 289 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-66
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 4e-66
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-37
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-33
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-32
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-25
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  205 bits (524), Expect = 3e-66
 Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)

Query: 1   DIIVDHAKKTTELALTLFELISEALGLNANRLKD-MDCAEGLFLLG--HYYPACPEPELT 57
           +   ++AK    LA  +F+ +S  LGL  +RL+  +   E L L    +YYP CP+PEL 
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 226

Query: 58  MGTDSHADTSFLTVLLQDRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQA--------- 108
           +G ++H D S LT +L + + GLQ+ +E +WV    +  ++V+++GD ++          
Sbjct: 227 LGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSI 286

Query: 109 -------NVGPRVSVACFFRSHFQSEKARLYGPINELLSEENPPIYKEITVKEYLSHSYS 161
                      R+S A F       +   +  P+ E++S E+P  +   T  +++ H   
Sbjct: 287 LHRGLVNKEKVRISWAVFCEP---PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH--- 340

Query: 162 IGLDGTSPLDHFKL 175
             L G    +    
Sbjct: 341 -KLFGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.24
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 93.93
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 88.54
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 86.82
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 86.71
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 85.48
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 84.73
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 82.01
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=1e-47  Score=316.07  Aligned_cols=165  Identities=30%  Similarity=0.602  Sum_probs=147.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC---CceeeEeeeCCCCCCCCCCccccCCCCCCceEEEecC-C
Q 047232            1 DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCA---EGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQD-R   76 (175)
Q Consensus         1 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~~---~~~~l~~~~Yp~~~~~~~~~g~~~HtD~g~lTiL~qd-~   76 (175)
                      +++++|+++|.+++.+|++++|++||+++++|.+.+..   ..+.+|++|||||++++..+|+++|||+|+||||+|| +
T Consensus       112 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~  191 (319)
T 1w9y_A          112 EVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDK  191 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCC
Confidence            36899999999999999999999999999999886652   4567999999999988888999999999999999995 7


Q ss_pred             CCCeeEeeCCeEEEEeecCCeEEEEecccccc----------------CCCCeEEEEEeeccCCCCCCceEeecCccccC
Q 047232           77 LGGLQVLHENEWVNVTPIHGALVVNLGDMMQA----------------NVGPRVSVACFFRSHFQSEKARLYGPINELLS  140 (175)
Q Consensus        77 ~~GLqV~~~g~W~~V~p~~~~~vVniGd~le~----------------~~~~R~Si~~F~~p~~d~~~~~~i~pl~~~~~  140 (175)
                      ++||||+++|+|++|+|+||++|||+||+||+                ..++|+|++||++|+.    |++|+|+|++++
T Consensus       192 v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~----d~~i~pl~~l~~  267 (319)
T 1w9y_A          192 VSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGS----DAVIYPAPALVE  267 (319)
T ss_dssp             CCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCT----TCEECCCGGGC-
T ss_pred             CCeeeEeeCCeEEEcccCCCcEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEEEecCCC----CCeEeCchhhcC
Confidence            99999999999999999999999999999998                3578999999999999    899999999999


Q ss_pred             CC---CCCCCCCccHHHHHHHHHhcCCCCCCC
Q 047232          141 EE---NPPIYKEITVKEYLSHSYSIGLDGTSP  169 (175)
Q Consensus       141 ~~---~~~~y~~~~~~dy~~~~~~~~~~~~~~  169 (175)
                      ++   +|++|++++++||++.+++..+.++..
T Consensus       268 ~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~  299 (319)
T 1w9y_A          268 KEAEENKQVYPKFVFDDYMKLYAGLKFQAKEP  299 (319)
T ss_dssp             -------CCCCCEEHHHHHHTTTTTTCSSHHH
T ss_pred             cccccCccccCcEeHHHHHHHHHhhhcCcchh
Confidence            87   599999999999999999887766543
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 175
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-24
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 3e-21
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-15
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 7e-09
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score = 93.8 bits (232), Expect = 4e-24
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 28/198 (14%)

Query: 1   DIIVDHAKKTTELALTLFELISEALGLNANRLKDMDCAEGLFLLG---HYYPACPEPELT 57
           +++ D AK+  +LA  L +L+ E LGL    LK+          G     YP CP+P+L 
Sbjct: 111 EVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLI 170

Query: 58  MGTDSHADTSFLTVLLQ-DRLGGLQVLHENEWVNVTPIHGALVVNLGDMMQA-------- 108
            G  +H D   + +L Q D++ GLQ+L + +W++V P+  ++VVNLGD ++         
Sbjct: 171 KGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKS 230

Query: 109 --------NVGPRVSVACFFRSHFQSEKARLYGPINELL---SEENPPIYKEITVKEYLS 157
                     G R+S+A F+     +       P   L+   +EEN  +Y +    +Y+ 
Sbjct: 231 VMHRVIAQKDGARMSLASFYNPGSDAV----IYPAPALVEKEAEENKQVYPKFVFDDYMK 286

Query: 158 HSYSIGLDGTSP-LDHFK 174
               +      P  +  K
Sbjct: 287 LYAGLKFQAKEPRFEAMK 304
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.16
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 85.33
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=8.2e-45  Score=294.80  Aligned_cols=163  Identities=31%  Similarity=0.593  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---CCceeeEeeeCCCCCCCCCCccccCCCCCCceEEEecC-CC
Q 047232            2 IIVDHAKKTTELALTLFELISEALGLNANRLKDMDC---AEGLFLLGHYYPACPEPELTMGTDSHADTSFLTVLLQD-RL   77 (175)
Q Consensus         2 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~~~~~~---~~~~~l~~~~Yp~~~~~~~~~g~~~HtD~g~lTiL~qd-~~   77 (175)
                      ++++|++.|.+++.+|+++++++||+++++|.+.+.   ...+.+|++||||++.++...|+++|||+|+||||+|+ .+
T Consensus       112 ~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~  191 (307)
T d1w9ya1         112 VMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKV  191 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCcccccccccccccccceeEEeeccCCC
Confidence            688999999999999999999999999999987642   33567899999999998888999999999999999996 47


Q ss_pred             CCeeEeeCCeEEEEeecCCeEEEEecccccc----------------CCCCeEEEEEeeccCCCCCCceEeecCccccC-
Q 047232           78 GGLQVLHENEWVNVTPIHGALVVNLGDMMQA----------------NVGPRVSVACFFRSHFQSEKARLYGPINELLS-  140 (175)
Q Consensus        78 ~GLqV~~~g~W~~V~p~~~~~vVniGd~le~----------------~~~~R~Si~~F~~p~~d~~~~~~i~pl~~~~~-  140 (175)
                      +||||.++|+|++|+|.+|++|||+||+||+                ++.+|||++||++|+.    |++|+|+|++++ 
T Consensus       192 ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~----d~~i~p~~~~v~~  267 (307)
T d1w9ya1         192 SGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGS----DAVIYPAPALVEK  267 (307)
T ss_dssp             CCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCT----TCEECCCGGGC--
T ss_pred             CeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCC----CCEEeCCHHHhcc
Confidence            9999999999999999999999999999998                4579999999999999    899999999996 


Q ss_pred             --CCCCCCCCCccHHHHHHHHHhcCCCCCC
Q 047232          141 --EENPPIYKEITVKEYLSHSYSIGLDGTS  168 (175)
Q Consensus       141 --~~~~~~y~~~~~~dy~~~~~~~~~~~~~  168 (175)
                        +++|++|+|+|++||++.+.+.++.++.
T Consensus       268 ~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~  297 (307)
T d1w9ya1         268 EAEENKQVYPKFVFDDYMKLYAGLKFQAKE  297 (307)
T ss_dssp             ------CCCCCEEHHHHHHTTTTTTCSSHH
T ss_pred             cCccCCCCCCCeeHHHHHHHHHhccCCccc
Confidence              4678999999999999999888876543
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure