Citrus Sinensis ID: 047238

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MAHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGSENCANGRQ
cccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEEEEEEccccccccccEEEEcccccccccccccccEEEEccccccHHHHHHHHHccccEEEEEEccccccEEEEEcccccccccccEEEccccccccccEEEEEEEEEEccEEEEcccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEccccccccccEEEEEcccEEEEcccccEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccEEEEEEEccccEEEEEEEEcccccEEEEcccccccccccccccccccccccEEcccccHHcccccccccccEEEEEEEcccccccEEEEEEEEEEcccccccccccEEEEEcccccccEccccccEEEEccccccEEcHHcccccccEEEEEEccccccccEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEEccEEEEccccHEEEccccccEEEEEcccEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccEccccccccccEEEEEEcccccccccHHcEEEEccccEEEEEEcccccEEEEEEEEEccEEEEEEccccEEEEcccccccccc
mahvqalpLAAFFSYFSVLFLThftssestgfslklipifspesplypgnlsqsERIHKMFEISKARANYMasmskpnafqeledihlpmakqdLFYSVEvnigtpmkpqhllfDTASSLvwtqcqpcircfdqttpifdprasttyseipcddplcrspfkcqngkcvytrryhvgdvtrglasretfafpvrngftfvprlafgcsndnsgfafggkisgilgfnasplslSSQLRNRIQGLFSYCLVREMEATSVIKfgrdadvrrrdlettpillsdlrphFYLHLLEISIGrhivrfppgafdimrdgtggfiidtgtpvtfirngpyqtLMQRYDQILRSLgrqripynasqefdycyrydssfkaypsmtfhlqeadyivqpenmyfiepdrgrfcvaiqddpkysiLGAWQQQNMLIIYdlnvpalrfgsencangrq
MAHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSvikfgrdadvrrrdlettpillsdlrpHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRfgsencangrq
MAHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRdgtggfiidtgtPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGSENCANGRQ
****QALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSP*************************************FQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFG*********
*****AL*LAAFFSYFSVLFLT**************IPIFS*****************K*******************************AKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDD*LC*******NGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLV***************D*****LETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQIL************SQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFG**NC*****
MAHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGS********
*AHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGSENC*****
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAHVQALPLAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQQQNMLIIYDLNVPALRFGSENCANGRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query446 2.2.26 [Sep-21-2011]
Q766C3437 Aspartic proteinase nepen N/A no 0.887 0.906 0.328 7e-54
Q766C2438 Aspartic proteinase nepen N/A no 0.834 0.849 0.321 2e-50
Q3EBM5447 Probable aspartic proteas no no 0.934 0.932 0.276 3e-38
Q6XBF8437 Aspartic proteinase CDR1 no no 0.876 0.894 0.292 1e-37
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.764 0.682 0.299 1e-36
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.905 0.859 0.276 2e-34
Q9S9K4475 Aspartic proteinase-like no no 0.764 0.717 0.238 2e-23
Q9LZL3453 Aspartic proteinase PCS1 no no 0.708 0.697 0.243 1e-12
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.735 0.8 0.239 2e-12
Q0IU52410 Aspartic proteinase Asp1 no no 0.717 0.780 0.242 3e-11
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 211/432 (48%), Gaps = 36/432 (8%)

Query: 21  LTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAF 80
           L H   ++ TGF + L  + S +      NL++ + + +  E    R   + +M      
Sbjct: 30  LNHRHEAKVTGFQIMLEHVDSGK------NLTKFQLLERAIERGSRRLQRLEAM-----L 78

Query: 81  QELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFD 140
                +   +   D  Y + ++IGTP +P   + DT S L+WTQCQPC +CF+Q+TPIF+
Sbjct: 79  NGPSGVETSVYAGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFN 138

Query: 141 PRASTTYSEIPCDDPLCR--SPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFT 198
           P+ S+++S +PC   LC+  S   C N  C YT  Y  G  T+G    ET  F    G  
Sbjct: 139 PQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTF----GSV 194

Query: 199 FVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVREMEAT-S 257
            +P + FGC  +N GF  G   +G++G    PLSL SQL       FSYC+     +T S
Sbjct: 195 SIPNITFGCGENNQGFGQGNG-AGLVGMGRGPLSLPSQLDVT---KFSYCMTPIGSSTPS 250

Query: 258 VIKFGRDAD-VRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDI-MRDGTG 315
            +  G  A+ V      TT I  S +   +Y+ L  +S+G   +   P AF +   +GTG
Sbjct: 251 NLLLGSLANSVTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTG 310

Query: 316 GFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPY--NASQEFDYCYRY--DSSFK 371
           G IID+GT +T+  N  YQ++ Q +      + +  +P    +S  FD C++   D S  
Sbjct: 311 GIIIDSGTTLTYFVNNAYQSVRQEF------ISQINLPVVNGSSSGFDLCFQTPSDPSNL 364

Query: 372 AYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPK-YSILGAWQQQNMLIIYDLN 430
             P+   H    D  +  EN YFI P  G  C+A+    +  SI G  QQQNML++YD  
Sbjct: 365 QIPTFVMHFDGGDLELPSEN-YFISPSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTG 423

Query: 431 VPALRFGSENCA 442
              + F S  C 
Sbjct: 424 NSVVSFASAQCG 435
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
255563741448 Aspartic proteinase nepenthesin-2 precur 0.957 0.953 0.387 8e-73
255563739414 DNA binding protein, putative [Ricinus c 0.894 0.963 0.364 4e-63
116790042460 unknown [Picea sitchensis] 0.887 0.860 0.326 5e-53
225438315436 PREDICTED: aspartic proteinase nepenthes 0.845 0.864 0.309 7e-53
61214233437 RecName: Full=Aspartic proteinase nepent 0.887 0.906 0.328 4e-52
165292434437 aspartic proteinase nepenthesin I [Nepen 0.890 0.908 0.322 9e-52
409179878437 aspartic proteinase nepenthesin 1 [Nepen 0.890 0.908 0.322 2e-51
449523529461 PREDICTED: aspartic proteinase nepenthes 0.856 0.828 0.312 4e-51
357492389434 Aspartic proteinase nepenthesin-1 [Medic 0.921 0.947 0.338 7e-51
449453902 716 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.856 0.533 0.312 1e-50
>gi|255563741|ref|XP_002522872.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223537956|gb|EEF39570.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 174/449 (38%), Positives = 251/449 (55%), Gaps = 22/449 (4%)

Query: 9   LAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARA 68
           LA+ F Y ++L L HF  S+  GFSL+++  +S ESP YPGN++  ERI ++ E+SK RA
Sbjct: 5   LASPFVYLTILSLIHFAISKPDGFSLEIVHRYSRESPFYPGNITDYERITRLVELSKIRA 64

Query: 69  NYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPC 128
           + +A ++  + F   E   L +++ D  Y V+V IG+P  P +L+ DT S L WTQC+PC
Sbjct: 65  HNLA-ITTSSGFSP-EAFRLRISQDDTCYLVKVIIGSPGVPLYLVPDTGSGLFWTQCEPC 122

Query: 129 IRCFDQTTPIFDPRASTTYSEIPCDDPLC---RSPFKCQNGKCVYTRRYHVGDVTRGLAS 185
            R F Q  PIF+  AS TY ++PC    C   ++ F+C++ KCVY   Y  G  T G+A+
Sbjct: 123 TRRFRQLPPIFNSTASRTYRDLPCQHQFCTNNQNVFQCRDDKCVYRIAYAGGSATAGVAA 182

Query: 186 RETFAFPVRNGFTFVPRLAFGCSNDN---SGFAFGGKISGILGFNASPLSLSSQLRNRIQ 242
           ++       +   F     FGCS DN   S F   GK  GI+G N SP+SL  Q+ +  +
Sbjct: 183 QDILQSAENDRIPFY----FGCSRDNQNFSTFESSGKGGGIIGLNMSPVSLLQQMNHITK 238

Query: 243 GLFSYC-----LVREMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGR 297
             FSYC     L     ATS+++FG D    RR   +TP +     P+++L+L+++S+  
Sbjct: 239 NRFSYCLNLFDLSSPSHATSLLRFGNDIRKSRRKYLSTPFVSPRGMPNYFLNLIDVSVAG 298

Query: 298 HIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNAS 357
           + ++ PPG F +  DGTGG IID+GT VT+I    Y  ++  +       G QR+    S
Sbjct: 299 NRMQIPPGTFALKPDGTGGTIIDSGTAVTYISQTAYFPVITAFKNYFDQHGFQRVNIQLS 358

Query: 358 QEFDYCYRYDS-SFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQ--DDPKYSI 414
                CY+    +F  YPSM FH Q AD+ V+PE +Y    DRG FCVA+Q     + +I
Sbjct: 359 GYI--CYKQQGHTFHNYPSMAFHFQGADFFVEPEYVYLTVQDRGAFCVALQPISPQQRTI 416

Query: 415 LGAWQQQNMLIIYDLNVPALRFGSENCAN 443
           +GA  Q N   IYD     L F  ENC +
Sbjct: 417 IGALNQANTQFIYDAANRQLLFTPENCQD 445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255563739|ref|XP_002522871.1| DNA binding protein, putative [Ricinus communis] gi|223537955|gb|EEF39569.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|116790042|gb|ABK25480.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|225438315|ref|XP_002272802.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|61214233|sp|Q766C3.1|NEP1_NEPGR RecName: Full=Aspartic proteinase nepenthesin-1; AltName: Full=Nepenthesin-I; Flags: Precursor gi|41016421|dbj|BAD07474.1| aspartic proteinase nepenthesin I [Nepenthes gracilis] Back     alignment and taxonomy information
>gi|165292434|dbj|BAF98915.1| aspartic proteinase nepenthesin I [Nepenthes alata] Back     alignment and taxonomy information
>gi|409179878|gb|AFV26024.1| aspartic proteinase nepenthesin 1 [Nepenthes mirabilis] Back     alignment and taxonomy information
>gi|449523529|ref|XP_004168776.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357492389|ref|XP_003616483.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] gi|355517818|gb|AES99441.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449453902|ref|XP_004144695.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase nepenthesin-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.800 0.774 0.311 3.3e-40
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.919 0.938 0.286 3.3e-40
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.928 0.960 0.287 8.7e-40
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.932 0.934 0.263 9.9e-39
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.737 0.681 0.301 4.3e-38
TAIR|locus:2057831396 AT2G28010 [Arabidopsis thalian 0.414 0.467 0.341 2.1e-36
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.746 0.686 0.324 3.5e-36
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.930 0.928 0.268 5.7e-36
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.744 0.664 0.292 7.2e-36
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.912 0.865 0.264 1.5e-35
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 121/389 (31%), Positives = 181/389 (46%)

Query:    71 MASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIR 130
             +A  SKP+   +  +I  P       + +E++IG P      + DT S L+WTQC+PC  
Sbjct:    84 LAVASKPD---DTNNIKAPTHGGSGEFLMELSIGNPAVKYSAIVDTGSDLIWTQCKPCTE 140

Query:   131 CFDQTTPIFDPRASTTYSEIPCDDPLCRS-P-FKCQNGK--CVYTRRYHVGDVTRGLASR 186
             CFDQ TPIFDP  S++YS++ C   LC + P   C   K  C Y   Y     TRGL + 
Sbjct:   141 CFDQPTPIFDPEKSSSYSKVGCSSGLCNALPRSNCNEDKDACEYLYTYGDYSSTRGLLAT 200

Query:   187 ETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFS 246
             ETF F   N    +  + FGC  +N G  F  + SG++G    PLSL SQL+   +  FS
Sbjct:   201 ETFTFEDENS---ISGIGFGCGVENEGDGFS-QGSGLVGLGRGPLSLISQLK---ETKFS 253

Query:   247 YCL--VREMEATSVIKFGRDAD--VRRR----DLETTP---ILLSDLRPHFY-LHLLEIS 294
             YCL  + + EA+S +  G  A   V +     D E T    +L +  +P FY L L  I+
Sbjct:   254 YCLTSIEDSEASSSLFIGSLASGIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLELQGIT 313

Query:   295 IGRHIVRFPPGAFDIMRXXXXXXXXXXXXPVTFIRNGPYQTLMQRYDQILRSLGRQRIPY 354
             +G   +      F++               +T++    ++ L + +   + SL    +  
Sbjct:   314 VGAKRLSVEKSTFELAEDGTGGMIIDSGTTITYLEETAFKVLKEEFTSRM-SLP---VDD 369

Query:   355 NASQEFDYCYRYDSSFK--AYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKY 412
             + S   D C++   + K  A P M FH + AD  +  EN    +   G  C+A+      
Sbjct:   370 SGSTGLDLCFKLPDAAKNIAVPKMIFHFKGADLELPGENYMVADSSTGVLCLAMGSSNGM 429

Query:   413 SILGAWQQQNMLIIYDLNVPALRFGSENC 441
             SI G  QQQN  +++DL    + F    C
Sbjct:   430 SIFGNVQQQNFNVLHDLEKETVSFVPTEC 458
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019250001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (571 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-66
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-66
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-46
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-39
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 4e-20
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 1e-19
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-15
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 7e-14
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 3e-10
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 4e-04
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 0.002
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information 
 Score =  218 bits (557), Expect = 2e-66
 Identities = 138/443 (31%), Positives = 204/443 (46%), Gaps = 25/443 (5%)

Query: 9   LAAFFSYFSVLFLTHFTSSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARA 68
           +      FS   L+    +   GF++ LI   SP+SP Y  + + S+R+   F  S +R 
Sbjct: 3   VLLALCLFSFSELSA-AEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRV 61

Query: 69  N-YMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQP 127
           N +  + + PN  Q        +      Y + ++IGTP  P   + DT S L+WTQC+P
Sbjct: 62  NHFRPTDASPNDPQS------DLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKP 115

Query: 128 CIRCFDQTTPIFDPRASTTYSEIPCDDPLCR----SPFKCQNGKCVYTRRYHVGDVTRGL 183
           C  C+ Q +P+FDP+ S+TY ++ CD   C+             C Y+  Y  G  T+G 
Sbjct: 116 CDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTKGN 175

Query: 184 ASRETFAFPVRNGF-TFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQ 242
            + ET      +G     P + FGC ++N G  F  K SGI+G    PLSL SQL + I 
Sbjct: 176 LAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQLGSSIG 234

Query: 243 GLFSYCLV---REMEATSVIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHI 299
           G FSYCLV    +   TS I FG +A V    + +TP++  D    +YL L  IS+G   
Sbjct: 235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSK- 293

Query: 300 VRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQE 359
            + P           G  IID+GT +T + +  Y  L      +  ++G +R+  +    
Sbjct: 294 -KLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELES---AVEEAIGGERVS-DPQGL 348

Query: 360 FDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGAWQ 419
              CY   S  K  P +T H   AD  +QP N  F++      C A+      +I G   
Sbjct: 349 LSLCYSSTSDIKL-PIITAHFTGADVKLQPLNT-FVKVSEDLVCFAMIPTSSIAIFGNLA 406

Query: 420 QQNMLIIYDLNVPALRFGSENCA 442
           Q N L+ YDL    + F   +C 
Sbjct: 407 QMNFLVGYDLESKTVSFKPTDCT 429

Length = 431
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.93
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.91
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.06
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.19
PF1365090 Asp_protease_2: Aspartyl protease 96.58
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.44
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.75
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 94.14
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.43
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.57
COG3577215 Predicted aspartyl protease [General function pred 92.4
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 89.44
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 87.25
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 86.04
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 85.79
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 84.48
PF1365090 Asp_protease_2: Aspartyl protease 84.45
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 81.33
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 81.17
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 80.55
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.9e-74  Score=577.08  Aligned_cols=404  Identities=32%  Similarity=0.581  Sum_probs=340.3

Q ss_pred             ccCCceeEEEEecCCCCCCCCCCCCCChHHHHHHHHHhHHHHHHHhhhcCCCCcccccccccccceecCccEEEEEEECC
Q 047238           26 SSESTGFSLKLIPIFSPESPLYPGNLSQSERIHKMFEISKARANYMASMSKPNAFQELEDIHLPMAKQDLFYSVEVNIGT  105 (446)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~pl~~~~~~Y~~~i~iGt  105 (446)
                      .+...+++++|+||++++||+++++.+..++++++++|+++|.+++.++...     ...+..++...+++|+++|.|||
T Consensus        19 ~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~Y~v~i~iGT   93 (431)
T PLN03146         19 EAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS-----PNDPQSDLISNGGEYLMNISIGT   93 (431)
T ss_pred             cccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc-----CCccccCcccCCccEEEEEEcCC
Confidence            3466789999999999999988888888999999999999999998654321     22455667778899999999999


Q ss_pred             CCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCC-C--CCCCC-CCceeeeeeCCCceEE
Q 047238          106 PMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRS-P--FKCQN-GKCVYTRRYHVGDVTR  181 (446)
Q Consensus       106 P~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~--~~C~~-~~~~~~~~Y~~g~~~~  181 (446)
                      |||++.|++||||+++||+|.+|..|..+.++.|||++|+||+.++|.++.|.. +  ..|.. +.|.|.+.|+||+.+.
T Consensus        94 Ppq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~  173 (431)
T PLN03146         94 PPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTK  173 (431)
T ss_pred             CCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCcee
Confidence            999999999999999999999999999888999999999999999999999987 3  34764 4699999999999789


Q ss_pred             EEEEEEEEEeecCCC-ccccccEEEEeeecCCCCcCCCCcceeEecCCCCCchhHhhhhhccCceEEeeecC---CCCce
Q 047238          182 GLASRETFAFPVRNG-FTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRNRIQGLFSYCLVRE---MEATS  257 (446)
Q Consensus       182 G~~~~D~v~l~~~~~-~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~Ql~~~~~~~Fs~~l~~~---~~~~g  257 (446)
                      |.+++|+|+|++..+ .+.++++.|||++...+ .+....+||||||++..++++|+.....++|||||.+.   ....|
T Consensus       174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g  252 (431)
T PLN03146        174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTS  252 (431)
T ss_pred             eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-CccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcc
Confidence            999999999986432 25688999999998877 54346899999999999999998865557999999752   23589


Q ss_pred             eEEEccCCccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHHH
Q 047238          258 VIKFGRDADVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLM  337 (446)
Q Consensus       258 ~l~fGg~d~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~  337 (446)
                      .|+||+......+.+.|+|++.+....+|.|.|++|+||++.+.++...+.  ..+.+++||||||++++||+++|++|.
T Consensus       253 ~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~  330 (431)
T PLN03146        253 KINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELE  330 (431)
T ss_pred             eEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHH
Confidence            999999643223459999998654357999999999999999887766554  344568999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcCCCeEEEEcCCCceEEEEEcCCCceeech
Q 047238          338 QRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQPENMYFIEPDRGRFCVAIQDDPKYSILGA  417 (446)
Q Consensus       338 ~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~~~~y~~~~~~~~~C~~~~~~~~~~ilG~  417 (446)
                      +++...+........    ...+..|+.... ...+|+|+|+|+|+++.|++++ |+++..++..|+++....+.||||+
T Consensus       331 ~~~~~~~~~~~~~~~----~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~-~~~~~~~~~~Cl~~~~~~~~~IlG~  404 (431)
T PLN03146        331 SAVEEAIGGERVSDP----QGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLN-TFVKVSEDLVCFAMIPTSSIAIFGN  404 (431)
T ss_pred             HHHHHHhccccCCCC----CCCCCccccCCC-CCCCCeEEEEECCCeeecCcce-eEEEcCCCcEEEEEecCCCceEECe
Confidence            999988753332222    334689997432 2478999999999999999999 9998777778999887666899999


Q ss_pred             hhhceeEEEEECCCCEEEEEeCCCCC
Q 047238          418 WQQQNMLIIYDLNVPALRFGSENCAN  443 (446)
Q Consensus       418 ~fl~~~y~vfD~~~~riGfa~~~c~~  443 (446)
                      .|||++|+|||++++|||||+.+|++
T Consensus       405 ~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        405 LAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             eeEeeEEEEEECCCCEEeeecCCcCc
Confidence            99999999999999999999999986

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-07
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-07
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 8e-05
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 1e-04
1htr_B329 Crystal And Molecular Structures Of Human Progastri 1e-04
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 142/407 (34%), Gaps = 60/407 (14%)
Query: 88  LPMAK--QDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDP-RAS 144
           +P+ K    L Y   +N  TP+  ++L+ D     +W  C       +  +  + P R  
Sbjct: 11  VPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQ-----NYVSSTYRPVRCR 65
Query: 145 TT----YSEIPCDDPLCRSPFKCQNGKC-VYTRRYHVGDVTRGLASRETFAFPVRNG--- 196
           T+       I C D        C N  C V+     +   T G  + +  +    +G   
Sbjct: 66  TSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSS 125
Query: 197 --FTFVPRLAFGCSNDNSGFAFGGKISGILGFNASPLSLSSQLRN--RIQGLFSYCLVRE 252
                VPR  F C+  +        + G+ G   + ++L SQ  +    +  F+ CL   
Sbjct: 126 GRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGS 185
Query: 253 MEATSVIKFGRD-------ADVRRRDLETTPILLSDLRP-----------HFYLHLLEIS 294
             + SVI FG D         V  + L  TP+L + +              +++ +  I 
Sbjct: 186 TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIK 245
Query: 295 IGRHIVRFPPGAFDIMRXXXXXXXXXXXXPVTFIRNGPYQTLMQRYDQILRSLGRQRIPY 354
           I   IV        I              P T +    Y+ + + +  I  S  R     
Sbjct: 246 INSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF--IKESAARNITRV 303
Query: 355 NASQEFDYCYRYDSSFK-----AYPSMTFHLQEADY---IVQPENMYFIEPDRGRFCVAI 406
            +   F  C+  D+        + PS+   LQ       I    +M +I  +    C+ +
Sbjct: 304 ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN--VVCLGV 361
Query: 407 QD---DPKYSI-LGAWQQQNMLIIYDLNVPALRFGS------ENCAN 443
            D   + + SI +G  Q ++ L+ +DL    + F          CAN
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN 408
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-72
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-69
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-67
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 9e-19
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-17
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-16
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-16
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 3e-16
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 4e-16
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 6e-16
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 7e-16
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-15
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 3e-15
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-15
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 8e-15
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 9e-15
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-14
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 3e-14
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 3e-14
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-14
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 6e-14
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 7e-14
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 1e-13
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-13
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 4e-13
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 9e-13
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-12
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-12
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 3e-12
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 4e-12
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 4e-11
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-09
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-06
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 4e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  232 bits (593), Expect = 2e-72
 Identities = 71/372 (19%), Positives = 125/372 (33%), Gaps = 34/372 (9%)

Query: 97  YSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPL 156
           +   +   TP+    +L D   + +W  C+          P       +  +   C    
Sbjct: 23  HWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCP 82

Query: 157 CRSPFKCQNGKC-VYTRRYHVGDVTRGLASRETFAFPVRNGFTF-------VPRLAFGCS 208
             S   C    C + +          G    +  A     G T        VP+  F C+
Sbjct: 83  AASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCA 142

Query: 209 NDNSG-FAFGGKISGILGFNASPLSLSSQL--RNRIQGLFSYCLVREMEATSVIKFGRDA 265
                         G+ G   +P+SL +QL     +Q  F+ CL R   +   I FG   
Sbjct: 143 PSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAP 202

Query: 266 D--------VRRRDLETTPILLSDLRPHFYLHLLEISIG-RHIVRFPPGAFDIMRDGTGG 316
           +            DL  TP L   L+  + + +  I I    +      +  I+   +GG
Sbjct: 203 NNMRQFQNQDIFHDLAFTP-LTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGG 261

Query: 317 FIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSM 376
            +I T TP   ++   YQ   Q + Q L    +      +   F  C+   +   AYPS+
Sbjct: 262 TMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQ----VKSVAPFGLCFNS-NKINAYPSV 316

Query: 377 TFHLQ---EADYIVQPENMYFIEPDRGRFCVAIQ----DDPKYSILGAWQQQNMLIIYDL 429
              +       + +  E+   ++   G  C+ +            LGA Q +  L+++DL
Sbjct: 317 DLVMDKPNGPVWRISGED-LMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDL 375

Query: 430 NVPALRFGSENC 441
               + F + + 
Sbjct: 376 ARSRVGFSTSSL 387
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.9
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.69
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.81
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 93.78
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 89.62
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 86.96
2hs1_A99 HIV-1 protease; ultra-high resolution active site 86.44
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 84.11
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 81.64
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=3.1e-62  Score=491.20  Aligned_cols=339  Identities=22%  Similarity=0.423  Sum_probs=283.3

Q ss_pred             cccccccce--ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCC-
Q 047238           83 LEDIHLPMA--KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRS-  159 (446)
Q Consensus        83 ~~~~~~pl~--~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-  159 (446)
                      .+.+..|++  ..+++|+++|.||||||+|.|+|||||+++||+|..|             .+|+|++.+.|.++.|.. 
T Consensus         6 ~~~~~~pv~~d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~~   72 (413)
T 3vla_A            6 PSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSLS   72 (413)
T ss_dssp             CSEEEEEEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHHT
T ss_pred             CccEEEEeeecCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCccccccc
Confidence            346788988  5789999999999999999999999999999998865             479999999999988864 


Q ss_pred             C------------CCCCCCCceeeeee-CCCceEEEEEEEEEEEeecCCC-----ccccccEEEEeeecCCCCcCCCCcc
Q 047238          160 P------------FKCQNGKCVYTRRY-HVGDVTRGLASRETFAFPVRNG-----FTFVPRLAFGCSNDNSGFAFGGKIS  221 (446)
Q Consensus       160 ~------------~~C~~~~~~~~~~Y-~~g~~~~G~~~~D~v~l~~~~~-----~~~~~~~~fg~~~~~~~~~~~~~~~  221 (446)
                      .            ..|.++.|.|.+.| ++|+.+.|.+++|+|+|+..+|     .+.++++.|||++.+.....+..++
T Consensus        73 ~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~d  152 (413)
T 3vla_A           73 GSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVV  152 (413)
T ss_dssp             TCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCC
T ss_pred             ccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccc
Confidence            1            24566679999999 5888799999999999986443     2678899999999863201235789


Q ss_pred             eeEecCCCCCchhHhhhhh--ccCceEEeeecCCCCceeEEEccCC-cc-----CCCC-ceeeeeecCCCC---------
Q 047238          222 GILGFNASPLSLSSQLRNR--IQGLFSYCLVREMEATSVIKFGRDA-DV-----RRRD-LETTPILLSDLR---------  283 (446)
Q Consensus       222 GIlGLg~~~~s~~~Ql~~~--~~~~Fs~~l~~~~~~~g~l~fGg~d-~~-----~~g~-l~~~p~~~~~~~---------  283 (446)
                      ||||||++.+++++||.++  ..++||+||.+.....|.|+||++| ..     +.++ +.|+||+.++..         
T Consensus       153 GIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~  232 (413)
T 3vla_A          153 GMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGE  232 (413)
T ss_dssp             EEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTC
T ss_pred             cccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccC
Confidence            9999999999999998864  3599999999865678999999998 32     5678 999999986422         


Q ss_pred             --CeEEEEeeeEEEecEEEeeCCCccccccCCCCcEEEeccCccccccchHHHHHHHHHHHHHh---ccCCCCCCCCCCC
Q 047238          284 --PHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILR---SLGRQRIPYNASQ  358 (446)
Q Consensus       284 --~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~  358 (446)
                        .+|+|+|++|+||++.+.++...+.++.++.+++||||||++++||+++|++|.++|.+.+.   +++...     ..
T Consensus       233 ~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~-----~~  307 (413)
T 3vla_A          233 PSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS-----VA  307 (413)
T ss_dssp             CCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECC-----CT
T ss_pred             CCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCC-----CC
Confidence              69999999999999999988777777666678899999999999999999999999999874   222221     23


Q ss_pred             CCccccccCCCC-----CCcCeEEEEEcC--eEEEEcCCCeEEEEcCCCceEEEEEcCC----CceeechhhhceeEEEE
Q 047238          359 EFDYCYRYDSSF-----KAYPSMTFHLQE--ADYIVQPENMYFIEPDRGRFCVAIQDDP----KYSILGAWQQQNMLIIY  427 (446)
Q Consensus       359 ~~~~C~~~~~~~-----~~~p~i~~~f~g--~~~~l~~~~~y~~~~~~~~~C~~~~~~~----~~~ilG~~fl~~~y~vf  427 (446)
                      .++.|+..+...     ..+|+|+|+|+|  ++|+|++++ |+++..++..|++++..+    +.||||+.|||++|+||
T Consensus       308 ~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~-y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvf  386 (413)
T 3vla_A          308 PFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSN-SMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQF  386 (413)
T ss_dssp             TCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHH-HEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEE
T ss_pred             CCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccc-eEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEE
Confidence            568999875332     378999999998  899999999 999876677899886532    58999999999999999


Q ss_pred             ECCCCEEEEEeCC
Q 047238          428 DLNVPALRFGSEN  440 (446)
Q Consensus       428 D~~~~riGfa~~~  440 (446)
                      |++++|||||++.
T Consensus       387 D~~~~riGfa~~~  399 (413)
T 3vla_A          387 DLATSRVGFSGTL  399 (413)
T ss_dssp             ETTTTEEEEEEEG
T ss_pred             ECCCCEEEEEEec
Confidence            9999999999843
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 446
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-46
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 3e-29
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 9e-29
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-28
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 7e-27
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 3e-26
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 7e-26
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 7e-26
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-25
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 4e-25
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 8e-25
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-24
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 3e-24
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 8e-24
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-23
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-23
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 5e-23
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 7e-23
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-22
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 6e-22
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-21
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 4e-17
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  161 bits (408), Expect = 4e-46
 Identities = 75/380 (19%), Positives = 127/380 (33%), Gaps = 42/380 (11%)

Query: 94  DLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCD 153
              Y++  + G       L+ D A  LVW+ C       +          +  Y    C 
Sbjct: 13  TSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCP 67

Query: 154 DPLCRSPFKCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFG----CSN 209
            P C S    +     Y      G    G  S   F     +G   V ++  G    C+ 
Sbjct: 68  APSCGSDKHDKPC-TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAP 126

Query: 210 DNSGFAFGGKISGILGFNASPLSLSSQL--RNRIQGLFSYCLVREMEATSVIKFGR-DAD 266
                +     +G+ G   S L+L +Q+    ++   F  CL       ++   G     
Sbjct: 127 SKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWP 186

Query: 267 VRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDIMRDGTGGFIIDTGTPVT 326
              + +  TP++     P  Y+    I +G   V  P GA       TGG ++ T  P  
Sbjct: 187 QFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTRLPYV 241

Query: 327 FIRNGPYQTLMQRYDQILRSLGRQRIPY----NASQEFDYCYRYDSSFK-----AYPSMT 377
            +R   Y+ LM  + + L +      P      A   F  CY   +        A P++ 
Sbjct: 242 LLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQ 301

Query: 378 FHLQ-EADYIVQPENMYFIEPDRGRFCVAIQD---------DPKYSILGAWQQQNMLIIY 427
             L   +D+ +  +N   ++  +G  CVA  +              ILG  Q ++ ++ +
Sbjct: 302 LGLDGGSDWTMTGKN-SMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDF 360

Query: 428 DLNVPALRFGSE----NCAN 443
           D+    L F        C  
Sbjct: 361 DMEKKRLGFSRLPHFTGCGG 380
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 84.02
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 82.02
d3ecga199 Human immunodeficiency virus type 2 (HIV-2) protea 81.78
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 81.19
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.2e-58  Score=456.63  Aligned_cols=307  Identities=21%  Similarity=0.308  Sum_probs=259.0

Q ss_pred             cccccccce-ecCccEEEEEEECCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccceecCCCCCCCCCC
Q 047238           83 LEDIHLPMA-KQDLFYSVEVNIGTPMKPQHLLFDTASSLVWTQCQPCIRCFDQTTPIFDPRASTTYSEIPCDDPLCRSPF  161 (446)
Q Consensus        83 ~~~~~~pl~-~~~~~Y~~~i~iGtP~Q~~~v~~DTGS~~~Wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~  161 (446)
                      ......||. +.+.+|+++|.||||||+|.|+|||||+++||+|..|..|.++.++.|||++|+|++..+          
T Consensus        43 ~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~----------  112 (370)
T d3psga_          43 ALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS----------  112 (370)
T ss_dssp             CSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE----------
T ss_pred             CcccccccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC----------
Confidence            334567888 678999999999999999999999999999999999999999999999999999999998          


Q ss_pred             CCCCCCceeeeeeCCCceEEEEEEEEEEEeecCCCccccccEEEEeeecCCCCcCCC--CcceeEecCCCCCc------h
Q 047238          162 KCQNGKCVYTRRYHVGDVTRGLASRETFAFPVRNGFTFVPRLAFGCSNDNSGFAFGG--KISGILGFNASPLS------L  233 (446)
Q Consensus       162 ~C~~~~~~~~~~Y~~g~~~~G~~~~D~v~l~~~~~~~~~~~~~fg~~~~~~~~~~~~--~~~GIlGLg~~~~s------~  233 (446)
                            |.|.+.|++|+ +.|.++.|++.++    ++.++++.||+++...+ .++.  ..+||+|||++..+      +
T Consensus       113 ------~~~~~~Yg~Gs-~~G~~~~d~~~~~----~~~~~~~~f~~~~~~~~-~~~~~~~~~Gi~gl~~~~~~~~~~~~~  180 (370)
T d3psga_         113 ------QELSITYGTGS-MTGILGYDTVQVG----GISDTNQIFGLSETEPG-SFLYYAPFDGILGLAYPSISASGATPV  180 (370)
T ss_dssp             ------EEEEEESSSCE-EEEEEEEEEEEET----TEEEEEEEEEEECSCCC-GGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred             ------CcEEEEeCCce-EEEEEEEEEEeee----ceeeeeeEEEEEeeccC-ceecccccccccccccCcccccCCCch
Confidence                  88999999998 9999999999999    57899999999998876 4433  78999999987654      3


Q ss_pred             hHhhhhh---ccCceEEeeecCCCCceeEEEccCC-ccCCCCceeeeeecCCCCCeEEEEeeeEEEecEEEeeCCCcccc
Q 047238          234 SSQLRNR---IQGLFSYCLVREMEATSVIKFGRDA-DVRRRDLETTPILLSDLRPHFYLHLLEISIGRHIVRFPPGAFDI  309 (446)
Q Consensus       234 ~~Ql~~~---~~~~Fs~~l~~~~~~~g~l~fGg~d-~~~~g~l~~~p~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~  309 (446)
                      ..++..+   ..++||+|+.++...+|.|+|||+| .++.+++.|+|+..   ..+|.|.++++.++++.+.....    
T Consensus       181 ~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~---~~~w~v~~~~i~v~g~~~~~~~~----  253 (370)
T d3psga_         181 FDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV---EGYWQITLDSITMDGETIACSGG----  253 (370)
T ss_dssp             HHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE---ETTEEEEECEEESSSSEEECTTC----
T ss_pred             hhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeecc---cceEEEEEeeEEeCCeEEecCCC----
Confidence            4444332   4789999999876778999999999 88999999999987   68999999999999988765432    


Q ss_pred             ccCCCCcEEEeccCccccccchHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccCCCCCCcCeEEEEEcCeEEEEcC
Q 047238          310 MRDGTGGFIIDTGTPVTFIRNGPYQTLMQRYDQILRSLGRQRIPYNASQEFDYCYRYDSSFKAYPSMTFHLQEADYIVQP  389 (446)
Q Consensus       310 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~i~~~f~g~~~~l~~  389 (446)
                           ..+||||||++++||++++++|++++.+...     ..    ....++|+..+    .+|+|+|+|+|+++.|++
T Consensus       254 -----~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~-----~~----~~~~~~C~~~~----~~P~l~f~f~g~~~~l~~  315 (370)
T d3psga_         254 -----CQAIVDTGTSLLTGPTSAIANIQSDIGASEN-----SD----GEMVISCSSID----SLPDIVFTIDGVQYPLSP  315 (370)
T ss_dssp             -----EEEEECTTCCSEEEEHHHHHHHHHHTTCEEC-----TT----CCEECCGGGGG----GCCCEEEEETTEEEEECH
T ss_pred             -----ccEEEecCCceEeCCHHHHHHHHHHhCCeee-----cC----CcEEEeccccC----CCceEEEEECCEEEEECh
Confidence                 5799999999999999999999999865522     11    23458899876    899999999999999999


Q ss_pred             CCeEEEEcCCCceEEE-EE--c----CCCceeechhhhceeEEEEECCCCEEEEEeC
Q 047238          390 ENMYFIEPDRGRFCVA-IQ--D----DPKYSILGAWQQQNMLIIYDLNVPALRFGSE  439 (446)
Q Consensus       390 ~~~y~~~~~~~~~C~~-~~--~----~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~  439 (446)
                      ++ |+++..+  .|+. +.  .    .++.||||++|||++|+|||++++||||||+
T Consensus       316 ~~-yi~~~~~--~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~  369 (370)
T d3psga_         316 SA-YILQDDD--SCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             HH-HEEECSS--CEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             HH-eEEEcCC--eEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEec
Confidence            99 9987543  3643 32  1    2257999999999999999999999999996
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure