Citrus Sinensis ID: 047252

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccHHHHHHHHHccHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MLVVALVQIMvkpgeavtcgqvDASLASCISYLtaggspsavccdglknlktitpptadrRAACDCVKAAAarypnikedaasslptkcgvqmnipisrstncak
Flexible Loop (DISEMBL)
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKtitpptadrRAACDCVKAAAARYPNIkedaasslptkcgvqmnipisrstncak
Low Complexity Region (SEG)
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTadrraacdcvkaaaarYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK
Disordered region (IsUnstruct)
*LVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNI****************************
Disordered Region (DISOPRED)
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCA*
Disordered Region (DISEMBL)
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPI********
Disordered Region (DISPRO)
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
P10973	92	Non-specific lipid-transf	N/A	no	0.828	0.945	0.704	8e-30
P10974	92	Non-specific lipid-transf	N/A	no	0.847	0.967	0.577	2e-24
P86137	92	Non-specific lipid-transf	N/A	no	0.847	0.967	0.582	2e-23
P85206	92	Non-specific lipid-transf	N/A	no	0.838	0.956	0.577	4e-23
Q2V3C1	119	Non-specific lipid-transf	yes	no	0.980	0.865	0.446	4e-22
Q9M5X8	117	Non-specific lipid-transf	N/A	no	0.980	0.880	0.451	3e-19
Q43017	117	Non-specific lipid-transf	N/A	no	0.990	0.888	0.447	6e-19
P82007	116	Non-specific lipid-transf	N/A	no	0.971	0.879	0.436	3e-18
P82534	91	Non-specific lipid-transf	N/A	no	0.838	0.967	0.465	1e-17
O23758	116	Non-specific lipid-transf	N/A	no	0.961	0.870	0.461	5e-17

>sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 17  VTCGQVDASLASCISYLTAG-GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP 75
           V CGQV++SLASCI +LT G  SPSA CC G++NLKT+ P +ADRRAAC+C+KAAAAR+P
Sbjct: 1   VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFP 60

Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNC 103
            IK+DAASSLP KCGV +NIPIS++TNC
Sbjct: 61  TIKQDAASSLPKKCGVDINIPISKTTNC 88

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Ricinus communis (taxid: 3988)

>sp|P10974|NLTPB_RICCO Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%), Gaps = 1/90 (1%)

Query: 17  VTCGQVDASLASCISYLTA-GGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP 75
           V CGQV+ +L+SC+ +LT    +PS  CC G+  LK + P   D+R AC+CVK AAARYP
Sbjct: 1   VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYP 60

Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           NI+EDAASSLP KCGV +N+PIS++TNC +
Sbjct: 61  NIREDAASSLPYKCGVVINVPISKTTNCHE 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Ricinus communis (taxid: 3988)

>sp|P86137|NLTP1_ACTDE Non-specific lipid-transfer protein 1 OS=Actinidia deliciosa PE=1 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 73/91 (80%), Gaps = 2/91 (2%)

Query: 16  AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTA-DRRAACDCVKAAAARY 74
           AV+CGQVD +L  C++YLT GG+PS  CC G+++LK++T     DR+AAC+C+K AAARY
Sbjct: 1   AVSCGQVDTALTPCLTYLTKGGTPSTQCCSGVRSLKSMTGTKVPDRQAACNCLKQAAARY 60

Query: 75  PNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
             IK DAA++L  KCGVQ+++PISRST+C+K
Sbjct: 61  QGIK-DAAAALSQKCGVQLSVPISRSTDCSK 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Actinidia deliciosa (taxid: 3627)

>sp|P85206|NLTP2_ACTDE Non-specific lipid-transfer protein 2 OS=Actinidia deliciosa PE=1 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 72/90 (80%), Gaps = 2/90 (2%)

Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTA-DRRAACDCVKAAAARYP 75
           V+CGQVD +L  C++YLT GG+PS  CC G+++LK++T     DR+AAC+C+K AAARY 
Sbjct: 2   VSCGQVDTALTPCLTYLTKGGTPSTQCCSGVRSLKSMTGTKVPDRQAACNCLKQAAARYQ 61

Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
            IK DAA++L  KCGVQ+++PISRST+C+K
Sbjct: 62  GIK-DAAAALSQKCGVQLSVPISRSTDCSK 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Actinidia deliciosa (taxid: 3627)

>sp|Q2V3C1|NLTPB_ARATH Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           +LV+ ++  +   GEA+ C QV+  LA C+ YL AGG+PS +CC+GL +LK   P  ADR
Sbjct: 13  LLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADR 72

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
           + AC+C+K+ A   P I +D A  LP KCGV + +P S++ +C
Sbjct: 73  QVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 70/104 (67%), Gaps = 1/104 (0%)

Query: 2   LVVALVQIMVKP-GEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           LVVAL  ++  P  +A+TCGQV ++LA CI+Y+  GG+    CC+G++N+  +   TADR
Sbjct: 11  LVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADR 70

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCA 104
           + AC+C+K  +A  P +  + A++LP KCGV +   IS STNCA
Sbjct: 71  QTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus avium (taxid: 42229)

>sp|Q43017|NLTP1_PRUDU Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 2   LVVALVQIMVKP-GEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           LVVAL  ++  P  +A+TCGQV ++LA CI Y+  GG+    CC+G++N+  +   T DR
Sbjct: 11  LVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDR 70

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +AAC+C+K  +A  P +  + A++LP KCGV +   IS STNCA 
Sbjct: 71  QAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCAN 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|P82007|NLTP1_HELAN Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           + ++ + Q+MV P  A+TC  V  +L  C+ YL +GG P+  CC G K L   T   ADR
Sbjct: 11  LAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADR 70

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
           R AC C K AA +   ++ D ASSLP KCG+  +IPI+ + NC
Sbjct: 71  RTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNC 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Permeabilizes the membrane of fungal spores, inhibits germination of the spores of the fungus F.solani at a concentration of 40 ug/ml. Inhibits the growth of F.solani with an IC(50) of 6.5 ug/ml, weakly inhibits the growth of the fungus A.alternata. Binds oleoyl-CoA.

Helianthus annuus (taxid: 4232)

>sp|P82534|NLTP1_PRUDO Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 60/88 (68%)

Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPN 76
           +TCGQV ++LA CI+Y+  GG+    CC+G++N+  +   TADRRAAC+C+K  +   P 
Sbjct: 1   ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPG 60

Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCA 104
           +  + A++LP KCGV +   IS STNCA
Sbjct: 61  VNPNNAAALPGKCGVNVPYKISASTNCA 88

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus domestica (taxid: 3758)

>sp|O23758|NLTP_CICAR Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 4   VALVQ-IMVKP--GEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           VAL+  I++ P    A+TCG+VD +LA C+ YL  G  PSA CC G++NL +    T DR
Sbjct: 9   VALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDR 68

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCA 104
           +AAC+C+K+AA     +  + A++LP KC V +   IS STNCA
Sbjct: 69  QAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCA 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Cicer arietinum (taxid: 3827)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
255541064	115	Nonspecific lipid-transfer protein A, pu	0.980	0.895	0.701	5e-34
255541060	113	Nonspecific lipid-transfer protein A, pu	0.980	0.911	0.682	3e-33
225446753	116	PREDICTED: non-specific lipid-transfer p	0.876	0.793	0.684	7e-30
359488913	115	PREDICTED: non-specific lipid-transfer p	0.990	0.904	0.548	1e-29
147833360	113	hypothetical protein VITISV_020613 [Viti	0.990	0.920	0.548	1e-29
128378	92	RecName: Full=Non-specific lipid-transfe	0.828	0.945	0.704	4e-28
255572371	115	Nonspecific lipid-transfer protein B, pu	0.952	0.869	0.564	4e-26
255572373	115	Nonspecific lipid-transfer protein B, pu	0.990	0.904	0.552	4e-26
255541058	107	Nonspecific lipid-transfer protein A, pu	0.942	0.925	0.615	2e-23
224136470	98	predicted protein [Populus trichocarpa]	0.914	0.979	0.561	3e-23

>gi|255541064|ref|XP_002511596.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548776|gb|EEF50265.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAG-GSPSAVCCDGLKNLKTITPPTAD 59
           MLVV  +   V PGEAV CGQV++SLASCI +LT G  SPSA CC G++NLKT+ P TAD
Sbjct: 8   MLVVLAIVQFVMPGEAVDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTTAD 67

Query: 60  RRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
           RRAACDC+KAAAAR+P IK+DAASSLP KCGV +NIPIS++TNC
Sbjct: 68  RRAACDCIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541060|ref|XP_002511594.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548774|gb|EEF50263.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 86/104 (82%), Gaps = 1/104 (0%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAG-GSPSAVCCDGLKNLKTITPPTAD 59
           MLVV  +   V PGEAV CGQV++SLASCI +LT G  SPSA CC G++NLKT+ P +AD
Sbjct: 8   MLVVLAIVQFVMPGEAVDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSAD 67

Query: 60  RRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
           RRAAC+C+KAAAAR+P IK+DAASSLP KCGV +NIPIS++TNC
Sbjct: 68  RRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446753|ref|XP_002282792.1| PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 78/92 (84%)

Query: 12  KPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAA 71
           +PG AVTCGQV+ SLA C+ YLT GG+P+A CC+G++NLK +TP T DRR AC CVKAAA
Sbjct: 21  QPGYAVTCGQVETSLAPCMPYLTGGGNPAAPCCNGVQNLKLLTPTTTDRRDACRCVKAAA 80

Query: 72  ARYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
           +++ NIKEDAAS+LPTKCGVQ+ IPIS +TNC
Sbjct: 81  SKFQNIKEDAASALPTKCGVQIGIPISMTTNC 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488913|ref|XP_002283359.2| PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 83/104 (79%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           ++ +A+V  M +P  A+TC  V+ +LA C+SYLT GG+P++ CCDG++ LK+++P T+DR
Sbjct: 9   LVALAMVHFMAEPARAITCSDVNKALAPCVSYLTGGGAPTSACCDGVRTLKSLSPTTSDR 68

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCA 104
           + AC C K AA+R PNI+EDAA++LP KCGVQ +IPISRST+C+
Sbjct: 69  QTACQCAKDAASRNPNIREDAAAALPNKCGVQTDIPISRSTDCS 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833360|emb|CAN72931.1| hypothetical protein VITISV_020613 [Vitis vinifera]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 83/104 (79%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADR 60
           ++ +A+V  M +P  A+TC  V+ +LA C+SYLT GG+P++ CCDG++ LK+++P T+DR
Sbjct: 9   LVALAMVHFMAEPARAITCSDVNKALAPCVSYLTGGGAPTSACCDGVRTLKSLSPTTSDR 68

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCA 104
           + AC C K AA+R PNI+EDAA++LP KCGVQ +IPISRST+C+
Sbjct: 69  QTACQCAKDAASRNPNIREDAAAALPNKCGVQTDIPISRSTDCS 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|128378|sp|P10973.1|NLTPA_RICCO RecName: Full=Non-specific lipid-transfer protein A; Short=NS-LTP A; AltName: Full=Phospholipid transfer protein; Short=PLTP gi|224909|prf||1204170A protein,nonspecific lipid transfer

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 17  VTCGQVDASLASCISYLTAG-GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP 75
           V CGQV++SLASCI +LT G  SPSA CC G++NLKT+ P +ADRRAAC+C+KAAAAR+P
Sbjct: 1   VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFP 60

Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNC 103
            IK+DAASSLP KCGV +NIPIS++TNC
Sbjct: 61  TIKQDAASSLPKKCGVDINIPISKTTNC 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572371|ref|XP_002527124.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis] gi|223533547|gb|EEF35287.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 6   LVQIMVKPGEAVTCGQVDASLASCISYLTA-GGSPSAVCCDGLKNLKTITPPTADRRAAC 64
           ++Q M   GEAV CGQV+ +L+SC+ +LT    +PS  CC G+  LK + P   D+R AC
Sbjct: 15  ILQAMAMQGEAVNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIAC 74

Query: 65  DCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +CVK AAARYPNI+EDAASSLP KCGV +N+PIS++TNC +
Sbjct: 75  ECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHE 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572373|ref|XP_002527125.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis] gi|223533548|gb|EEF35288.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 1/105 (0%)

Query: 2   LVVALVQIMVKPGEAVTCGQVDASLASCISYLTA-GGSPSAVCCDGLKNLKTITPPTADR 60
           + V +VQ+M   G A+ C QV+  L +C+ YL     SPS  CC G++NLK + P TADR
Sbjct: 11  VTVIMVQLMAMQGVAIDCAQVNLLLGTCMPYLIGFDSSPSLACCAGVRNLKRLAPTTADR 70

Query: 61  RAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           R ACDCVKAAAAR+PNI++DAAS+LP KCGV  NIP+S +T C +
Sbjct: 71  RVACDCVKAAAARHPNIRDDAASTLPNKCGVDFNIPVSNTTKCQE 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541058|ref|XP_002511593.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548773|gb|EEF50262.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 5/104 (4%)

Query: 1   MLVVALVQIMVKPGEAVTCGQVDASLASCISYLT-AGGSPSAVCCDGLKNLKTITPPTAD 59
           ++  AL+Q M  PGEA+ CGQV++SLA+CI YLT A  +PSA CC G+KNLK + P TA 
Sbjct: 4   LVTFALLQFMGMPGEAIDCGQVNSSLAACIPYLTGADAAPSASCCAGVKNLKALAPTTAA 63

Query: 60  RRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
                   KAAAARYP IKEDAASSLP  CGV+MNIPIS++TNC
Sbjct: 64  CACI----KAAAARYPTIKEDAASSLPKNCGVEMNIPISKTTNC 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136470|ref|XP_002326868.1| predicted protein [Populus trichocarpa] gi|222835183|gb|EEE73618.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 75/98 (76%), Gaps = 2/98 (2%)

Query: 10  MVKPGEAVTCGQVDASLASCISYLTAGGS--PSAVCCDGLKNLKTITPPTADRRAACDCV 67
           MVKPGEA+TCG V++ L++C+SYLT  G   P   CC G+  LK      AD++AAC+CV
Sbjct: 1   MVKPGEAITCGDVNSDLSACVSYLTGKGGDFPPPQCCAGVNKLKESAVSIADKQAACECV 60

Query: 68  KAAAARYPNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           KAAAAR P++K++AASSLP KC VQ+++PIS++ NCA+
Sbjct: 61  KAAAARIPDMKDEAASSLPAKCKVQVDVPISKNFNCAE 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.980	0.865	0.368	6.7e-17
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.961	0.878	0.356	5e-12
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.961	0.848	0.333	2.2e-11
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.933	0.875	0.366	2.2e-11
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.971	0.836	0.339	4.5e-11
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.828	0.956	0.367	7.4e-11
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.980	0.872	0.307	4.1e-10
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.980	0.872	0.307	1.4e-09
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.980	0.872	0.298	9.7e-09
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.828	0.75	0.303	2.6e-08

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 38/103 (36%), Positives = 56/103 (54%)

Query:     1 MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXX 60
             +LV+ ++  +   GEA+ C QV+  LA C+ YL AGG+PS +CC+GL +LK   P     
Sbjct:    13 LLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADR 72

Query:    61 XXXXXXXXXXXXXYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
                           P I +D A  LP KCGV + +P S++ +C
Sbjct:    73 QVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 36/101 (35%), Positives = 47/101 (46%)

Query:     3 VVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXX 62
             +V  V I+     A++CG V  SLA C +YL+ GG     CC G+K L ++   T     
Sbjct:    11 LVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQ 70

Query:    63 XXXXXXXXXXXYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
                           +    AS LP KCGV +  PIS STNC
Sbjct:    71 ACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNC 111

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/102 (33%), Positives = 50/102 (49%)

Query:     3 VVALVQIMVKPGEA-VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXX 61
             ++ L   M  P E+ + CG V ++LA C++YLT  G   + CC G+K+L  +   T    
Sbjct:    11 LIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRK 70

Query:    62 XXXXXXXXXXXXYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
                            +  D  ++LPT CGV +  PIS STNC
Sbjct:    71 QVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 37/101 (36%), Positives = 47/101 (46%)

Query:     4 VALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXX 63
             V  V I+     A+TCG V +SL+ C+ YL+ GG     CC G+K L  +   T      
Sbjct:    12 VLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQA 71

Query:    64 XXXXXXXXXXYPNIKEDAASSLPTKCGVQMNIPISRSTNCA 104
                          +    AS LP KCGV +  PIS STNCA
Sbjct:    72 CRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCA 109

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query:     2 LVVALVQIMVKPGEA---VTCGQVDASLASCISYLTAGGSP-SAVCCDGLKNLKTITPPT 57
             +V+A V +M+   EA   ++CGQVD+ LA C++Y+T   S  S  CC G++ L  +   +
Sbjct:    13 VVLAAVVLMMAGREASAALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSS 72

Query:    58 XXXXXXXXXXXXXXXXYPNIKEDAASSLPTKCGVQMNIPISRSTNC 103
                               +I     S +P KCGV +  PIS STNC
Sbjct:    73 PDRKIACRCLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTNC 118

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 32/87 (36%), Positives = 41/87 (47%)

Query:    17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
             +TCGQV  +LA CI +L  GG     CC G+KN+   +  T                   
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60

Query:    77 IKEDAASSLPTKCGVQMNIPISRSTNC 103
             I  + A +LP KCGV +   IS STNC
Sbjct:    61 INPNNAEALPGKCGVNIPYKISTSTNC 87

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query:     1 MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXX 60
             +L   +V   +    A++CG V+++LA+CI Y+  GG     CC G+KNL +I   T   
Sbjct:    11 LLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDR 70

Query:    61 XXXXXXXXXXXXXYPN-IKEDAASSLPTKCGVQMNIPISRSTNC 103
                            + +    A+ +P  CGV +   IS STNC
Sbjct:    71 QQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/104 (30%), Positives = 48/104 (46%)

Query:     1 MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXX 60
             +L   +V   +     ++CG V+ +LA CI+YLT G   +  CC+G+ NLK +   T   
Sbjct:    11 VLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDR 70

Query:    61 XXXXXXXXXXXXXY-PNIKEDAASSLPTKCGVQMNIPISRSTNC 103
                            P +    A+ LP+ C V +   IS STNC
Sbjct:    71 QQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 31/104 (29%), Positives = 47/104 (45%)

Query:     1 MLVVALVQIMVKPGEAVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXX 60
             ++V  LV   +    A++CG V  SL  C +YLT GG     CC G++ L ++   T   
Sbjct:    11 VIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDR 70

Query:    61 XXXXXXXXXXXXXYPN-IKEDAASSLPTKCGVQMNIPISRSTNC 103
                            + +    A+ LP  C V+++ PIS  TNC
Sbjct:    71 QQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 27/89 (30%), Positives = 42/89 (47%)

Query:    16 AVTCGQVDASLASCISYLTAG-GSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXY 74
             A++C  V   L  C+SYLT+G G+P   CCDG+K+L   T  T                 
Sbjct:    25 AISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATT-TSADKKAACQCIKSVANS 83

Query:    75 PNIKEDAASSLPTKCGVQMNIPISRSTNC 103
               +K + A +L + CG  + +  S + +C
Sbjct:    84 VTVKPELAQALASNCGASLPVDASPTVDC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V3C1	NLTPB_ARATH	No assigned EC number	0.4466	0.9809	0.8655	yes	no
P10973	NLTPA_RICCO	No assigned EC number	0.7045	0.8285	0.9456	N/A	no
P10974	NLTPB_RICCO	No assigned EC number	0.5777	0.8476	0.9673	N/A	no
P85206	NLTP2_ACTDE	No assigned EC number	0.5777	0.8380	0.9565	N/A	no
P86137	NLTP1_ACTDE	No assigned EC number	0.5824	0.8476	0.9673	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018836001 RecName- Full=Non-specific lipid-transfer protein;; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) (114 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	2e-29
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	7e-06
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	2e-04
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	0.001

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score =  100 bits (252), Expect = 2e-29
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 17  VTCGQVDASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP 75
           ++CGQV + LA C+ YLT GG +PS  CC G+K+L  +   TADR+AAC+C+K+AAA   
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNC 103
            +    A+ LP KCGV +  PIS ST+C
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDC 88

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 40.2 bits (94), Expect = 7e-06
 Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 19 CGQVDASLASCISYLTAG-GSPSAVCCDGLKNLKTITPPTADRRAACDC--VKAAAARYP 75
          CGQV   LA C  YL  G   PS  CC  L+ L          +A C C  ++A      
Sbjct: 1  CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL----------QAQCRCTAIRAIVLGIE 50

Query: 76 NIKEDAASSLPTKCGVQMNIPI 97
           I   AA+SLP+ CGV +   I
Sbjct: 51 GINPQAAASLPSMCGVNVPYGI 72

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 26 LASCISYLTAGGS-PSAVCCDGLKNLKTITPPTADRRAACDCVKAAAAR-YPNIKEDAAS 83
          LA C+SYLT G + P + CC GLK++    P     +  C  +    A          A 
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKSDP-----KCLCAALNGPGASLLGLKNATRAL 55

Query: 84 SLPTKCGV 91
          +LP  CG+
Sbjct: 56 ALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 1  MLVVALVQIMVKPGEAVTCGQVDASLASCIS--YLTAGGSPSAVCCDGLKNLKTITPPTA 58
          + V+        P  A        SL  C+   Y+    +PS  CC  LK         A
Sbjct: 2  LAVLLASAAAAPPAPASAA-SCADSLLPCLGYCYVNGTAAPSPACCAALKAAVK-----A 55

Query: 59 DRRAACDCVKAAAARYPNIKEDAASSLPTKCGV 91
          D    CD V +  A    I    A +LP  CG+
Sbjct: 56 DVPCLCDLVTSPLAAGFGINLTRAVALPKACGL 88

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.95
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.63
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.56
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.51
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.36
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.06
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	99.0
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	93.56
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	93.08

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.95  E-value=1.1e-28  Score=156.71  Aligned_cols=88  Identities=50%  Similarity=1.001  Sum_probs=82.1

Q ss_pred             CCchhhhccccccHHHHcCCC-CCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCC
Q 047252           17 VTCGQVDASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNI   95 (105)
Q Consensus        17 ~~C~~~~~~l~~C~~yl~~~~-~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf   95 (105)
                      ++|+.+...|.||++|++|++ .|+++||+++++|++.++|+.|++++|+|+++....+++||++|+++||++||++++|
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            469999999999999999865 7999999999999999999999999999999887777569999999999999999999


Q ss_pred             CCCCCccCC
Q 047252           96 PISRSTNCA  104 (105)
Q Consensus        96 ~i~~~~dC~  104 (105)
                      ||+++|||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.63  E-value=4.2e-16  Score=95.70  Aligned_cols=66  Identities=32%  Similarity=0.605  Sum_probs=53.4

Q ss_pred             chhhhccccccHHHHcCCC---CCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCC
Q 047252           19 CGQVDASLASCISYLTAGG---SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        19 C~~~~~~l~~C~~yl~~~~---~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p   94 (105)
                      |+..+..|+||++|+++++   .|+..||+++|+++        +  .|+|.+.....++.||.+++++||++||+++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------L--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------c--CCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            5555589999999999765   47889999999842        3  38888765555556999999999999999987

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.56  E-value=7.8e-16  Score=97.67  Aligned_cols=67  Identities=34%  Similarity=0.707  Sum_probs=45.6

Q ss_pred             hcccccc---HHHHcCCCCCChhhhhhhhhccccCCCcccccccceeecccc-ccCCCCCHHHHhhchhcCCCCCCC
Q 047252           23 DASLASC---ISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAA-ARYPNIKEDAASSLPTKCGVQMNI   95 (105)
Q Consensus        23 ~~~l~~C---~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~-~~~~~in~~~a~~LP~~Cgv~~pf   95 (105)
                      ...|.+|   ..|+.++..|++.||+++|++.+     .+..++|+.+++.. ..+ +||.+|+.+||++||++.+.
T Consensus        23 ~~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg~~~~~   93 (96)
T PF14368_consen   23 ANSLLPCCPCLCYVTGGPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACGVPVPP   93 (96)
T ss_dssp             HCCCCHH--HHHHHCC-----HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCTSS-S-
T ss_pred             HHHHhccccchhccCCCCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcCCCCCC
Confidence            3357777   78998777899999999999853     35677888777665 344 79999999999999999884

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.51  E-value=8.1e-15  Score=87.00  Aligned_cols=61  Identities=36%  Similarity=0.794  Sum_probs=50.8

Q ss_pred             ccccHHHHcCC-CCCChhhhhhhhhccccCCCcccccccceeeccccccCCCC-CHHHHhhchhcCCC
Q 047252           26 LASCISYLTAG-GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNI-KEDAASSLPTKCGV   91 (105)
Q Consensus        26 l~~C~~yl~~~-~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv   91 (105)
                      |.||++|++|+ ..|+++||++++++++.     +++++|.++++......++ |.+++.+||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            67999999987 47899999999998763     6778899888765554344 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.36  E-value=7.2e-13  Score=80.12  Aligned_cols=60  Identities=28%  Similarity=0.612  Sum_probs=47.0

Q ss_pred             ccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCC-CCCHHHHhhchhcCCCCCC
Q 047252           24 ASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP-NIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        24 ~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~-~in~~~a~~LP~~Cgv~~p   94 (105)
                      ..|.+|++|++++.+||.+||+.+|+.           ..|+|.+.....+. .||.++|++||++||+++|
T Consensus         4 ~~L~~C~~ai~~~~~Ps~~CC~~Lk~~-----------~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGGSPPSAACCAKLKEQ-----------QSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCCCCCCHHHHHHHhcC-----------CCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence            389999999998888999999999971           24666542222332 4999999999999999885

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.06  E-value=2e-10  Score=69.23  Aligned_cols=68  Identities=43%  Similarity=0.832  Sum_probs=51.6

Q ss_pred             chhhhccccccHHHHcCC---CCCChhhhhhhhhccccCCCcccccccceeecccc--ccCCC---CCHHHHhhchhcCC
Q 047252           19 CGQVDASLASCISYLTAG---GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAA--ARYPN---IKEDAASSLPTKCG   90 (105)
Q Consensus        19 C~~~~~~l~~C~~yl~~~---~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~--~~~~~---in~~~a~~LP~~Cg   90 (105)
                      |..+...+.+|.+|+++.   ..|+.+||++++.++         ...|+|.....  ..+..   ++..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            566677788999999975   368899999999984         23678765332  22211   59999999999999


Q ss_pred             CCCCC
Q 047252           91 VQMNI   95 (105)
Q Consensus        91 v~~pf   95 (105)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99875

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=99.00  E-value=6e-12  Score=79.17  Aligned_cols=67  Identities=30%  Similarity=0.717  Sum_probs=52.1

Q ss_pred             ccccccHHHHcCCC-CCChhhhhhhhhccccCCCcccccccceeeccccccC----------CCCCHHHHhhchhcCCCC
Q 047252           24 ASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARY----------PNIKEDAASSLPTKCGVQ   92 (105)
Q Consensus        24 ~~l~~C~~yl~~~~-~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~----------~~in~~~a~~LP~~Cgv~   92 (105)
                      ..+.+|.+|++++. .|+..||++|++|.        +++.|..++......          .+++..+|.+||+.||++
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~--------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~   84 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLD--------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS   84 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHHh--------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence            45999999999865 57889999999984        356666666544431          258899999999999999


Q ss_pred             CCCCCCCCccC
Q 047252           93 MNIPISRSTNC  103 (105)
Q Consensus        93 ~pf~i~~~~dC  103 (105)
                      ++|     +||
T Consensus        85 ~~~-----~~C   90 (90)
T PF00234_consen   85 PPY-----TDC   90 (90)
T ss_dssp             SSS-----S-G
T ss_pred             CCC-----CCC
Confidence            997     666

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=93.56  E-value=0.13  Score=32.43  Aligned_cols=75  Identities=25%  Similarity=0.455  Sum_probs=45.5

Q ss_pred             chhhhccccccHHHHcC-----CCCCChhhhhhhhhccccCCCcccccccceeeccccccCC-CCCHH-HHhhchhcCCC
Q 047252           19 CGQVDASLASCISYLTA-----GGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP-NIKED-AASSLPTKCGV   91 (105)
Q Consensus        19 C~~~~~~l~~C~~yl~~-----~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~-~in~~-~a~~LP~~Cgv   91 (105)
                      |-.-...|.-|.+-+..     +.+|..+||.-++.|.+.      .-+.|.|-.-.++.++ ++|.. +..-|-..||-
T Consensus         4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CGk   77 (85)
T cd01958           4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCGR   77 (85)
T ss_pred             CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHcC
Confidence            44333467778887743     224557999999998753      2357888643333331 33333 44455567999


Q ss_pred             CCCCCCCCCccC
Q 047252           92 QMNIPISRSTNC  103 (105)
Q Consensus        92 ~~pf~i~~~~dC  103 (105)
                      ..|    ++|.|
T Consensus        78 ~~P----~gf~C   85 (85)
T cd01958          78 NVP----PGFTC   85 (85)
T ss_pred             cCC----CCCcC
Confidence            987    45554

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=93.08  E-value=0.046  Score=34.50  Aligned_cols=71  Identities=27%  Similarity=0.519  Sum_probs=45.0

Q ss_pred             ccccccHHHHcC-----CCCCChhhhhhhhhccccCCCcccccccceee--ccccccCCCCCHH-HHhhchhcCCCCCCC
Q 047252           24 ASLASCISYLTA-----GGSPSAVCCDGLKNLKTITPPTADRRAACDCV--KAAAARYPNIKED-AASSLPTKCGVQMNI   95 (105)
Q Consensus        24 ~~l~~C~~yl~~-----~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl--~~~~~~~~~in~~-~a~~LP~~Cgv~~pf   95 (105)
                      ..|.-|.+.+.-     +.++..+||.-++.|.+.      .-+.|.|-  |.....+-++|.. .+..|-..||...| 
T Consensus         7 lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p-   79 (85)
T PF14547_consen    7 LKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP-   79 (85)
T ss_pred             hhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc-
Confidence            377788888821     224567999999998753      23578884  4322221133332 55577788999987 


Q ss_pred             CCCCCccCC
Q 047252           96 PISRSTNCA  104 (105)
Q Consensus        96 ~i~~~~dC~  104 (105)
                         ++|.|.
T Consensus        80 ---~gf~C~   85 (85)
T PF14547_consen   80 ---SGFTCP   85 (85)
T ss_pred             ---CCCcCC
Confidence               677763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		4e-11
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		4e-10
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		1e-09
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		3e-09
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		1e-08
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		1e-08
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		7e-08
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		4e-07
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		4e-07
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		1e-06

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
           +TCGQV +SLA CI Y+  GG+    CC+G++N+  +   T                 P 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCA 104
           +  + A++LP KCGV +   IS STNCA
Sbjct: 62  VNPNNAAALPGKCGVSIPYKISASTNCA 89

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
           + CG VD+ +  C+SY+  G  PS  CCDG+KNL                         N
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           + ED A S+P KCGV +   IS + +C++
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 19  CGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPNIK 78
           CG VD+ +  C+SY+  G  PS  CCDG+KNL                         N+ 
Sbjct: 3   CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN 62
Query: 79  EDAASSLPTKCGVQMNIPISRSTNCAK 105
           ED A S+P KCGV +   IS + +C++
Sbjct: 63  EDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
           +TCGQV++++  C++Y   G  PSA CC G+++LK     T                   
Sbjct: 1   ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +    A+S+P+KCGV +   IS S +C++
Sbjct: 61  LNAGNAASIPSKCGVSVPYTISASIDCSR 89

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 16  AVTCGQVDASLASCISYLTAGGS-PSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXY 74
           A++CGQV +++A CISY    GS PSA CC G+++L      T                 
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 75  PNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
             +    A+S+P+KCGV +   IS ST+C++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 41/87 (47%)
Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
           +TCGQV  +LA CI +L  GG     CC G+KN+   +  T                   
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNC 103
           I  + A +LP KCGV +   IS STNC
Sbjct: 61  INPNNAEALPGKCGVNIPYKISTSTNC 87

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 16  AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYP 75
           A++CG V + L+ C++YLT G  PS  CC G+K L      T                  
Sbjct: 1   AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNC 103
            +  + A++LP KCGV +   IS +TNC
Sbjct: 61  KLNTNNAAALPGKCGVNIPYKISTTTNC 88

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
           + CGQVD+ +  C++Y+  G  PS  CC+G+++L      +                  N
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +  + A+S+P+KC V +   IS   +C++
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYPN 76
           + CGQVD+ +  C++Y+  G  PS  CC+G+++L      +                  N
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +  + A+S+P+KC V +   IS   +C++
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 16  AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTXXXXXXXXXXXXXXXXYP 75
           A+TCGQV ++LA C++YL   G P   CC G+K L      T                  
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
            I    A+ LP+ CGV +   IS ST+C+K
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	2e-30
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	5e-30
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	1e-29
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	2e-29
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	3e-29

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score =  102 bits (256), Expect = 2e-30
 Identities = 41/89 (46%), Positives = 59/89 (66%)

Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPN 76
           +TCGQV +SLA CI Y+  GG+    CC+G++N+  +   T DR+AAC+C+K  +A  P 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61

Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +  + A++LP KCGV +   IS STNCA 
Sbjct: 62  VNPNNAAALPGKCGVSIPYKISASTNCAT 90

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score =  101 bits (254), Expect = 5e-30
 Identities = 37/89 (41%), Positives = 55/89 (61%)

Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPN 76
           + CG VD+ +  C+SY+  G  PS  CCDG+KNL       +DR++AC+C+K  A    N
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60

Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           + ED A S+P KCGV +   IS + +C++
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score =  100 bits (251), Expect = 1e-29
 Identities = 43/89 (48%), Positives = 53/89 (59%)

Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPN 76
           +TCGQV  +LA CI +L  GG     CC G+KN+   +  TADRRA C C+KAAA     
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60

Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           I  + A +LP KCGV +   IS STNC  
Sbjct: 61  INPNNAEALPGKCGVNIPYKISTSTNCNS 89

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score =  100 bits (250), Expect = 2e-29
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 16  AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP 75
           A+TCGQV ++LA C++YL     P   CC G+K L      T DR+ AC C+K+AA    
Sbjct: 1   AITCGQVTSNLAPCLAYLR-NTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59

Query: 76  NIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
            I    A+ LP+ CGV +   IS ST+C+K
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score =   99 bits (249), Expect = 3e-29
 Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 16  AVTCGQVDASLASCISYLTAGGS-PSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARY 74
           A++CGQV +++A CISY    GS PSA CC G+++L      TADRRAAC+C+K AAA  
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 75  PNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
             +    A+S+P+KCGV +   IS ST+C++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.97
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.97
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.96
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.96
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.96
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.96
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.64
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.54
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.52
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	91.86
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	86.67

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.97  E-value=6.3e-34  Score=181.83  Aligned_cols=90  Identities=43%  Similarity=0.901  Sum_probs=85.4

Q ss_pred             CCCchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCC
Q 047252           16 AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNI   95 (105)
Q Consensus        16 ~~~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf   95 (105)
                      +++|+++...|.||++||+|++.|++.||+|+++|++.++|+.|||++|+|+|+.+..+++||.+|+++||++|||++||
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~   80 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY   80 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSS
T ss_pred             CCCHHHHHHHHHhHHHHHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCC
Confidence            47899999999999999998888999999999999999999999999999999877777789999999999999999999


Q ss_pred             CCCCCccCCC
Q 047252           96 PISRSTNCAK  105 (105)
Q Consensus        96 ~i~~~~dC~~  105 (105)
                      |||+++||++
T Consensus        81 ~Is~~~dC~~   90 (93)
T 2ljo_A           81 KISTTTNCNT   90 (93)
T ss_dssp             CCSTTCCGGG
T ss_pred             CCCCCCCCCC
Confidence            9999999985

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.97  E-value=2.9e-32  Score=173.06  Aligned_cols=89  Identities=42%  Similarity=0.904  Sum_probs=83.5

Q ss_pred             CCchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCCC
Q 047252           17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIP   96 (105)
Q Consensus        17 ~~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf~   96 (105)
                      ++|+++...|.||++|++|++.|+++||+++|+|+++|+|+.|||..|+|+++....+++||.++|++||++||+++|||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~~   80 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT   80 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSSC
T ss_pred             CCHHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCCC
Confidence            47999999999999999987679999999999999999999999999999988777776899999999999999999999


Q ss_pred             CCCCccCCC
Q 047252           97 ISRSTNCAK  105 (105)
Q Consensus        97 i~~~~dC~~  105 (105)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (90)
T 1bwo_A           81 ISLNIDCSR   89 (90)
T ss_dssp             CCTTCCGGG
T ss_pred             CCCCCCCCC
Confidence            999999985

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.96  E-value=8.6e-32  Score=171.79  Aligned_cols=90  Identities=48%  Similarity=0.935  Sum_probs=83.6

Q ss_pred             CCCchhhhccccccHHHHcCCC-CCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCC
Q 047252           16 AVTCGQVDASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        16 ~~~C~~~~~~l~~C~~yl~~~~-~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p   94 (105)
                      +++|+++...|.||++|++|++ .|+++||+++|+|+++|+|+.|||..|+|++.....+++||.++|++||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            3689999999999999999866 577899999999999999999999999999877777778999999999999999999


Q ss_pred             CCCCCCccCCC
Q 047252           95 IPISRSTNCAK  105 (105)
Q Consensus        95 f~i~~~~dC~~  105 (105)
                      ||||++|||++
T Consensus        81 ~~is~~~dC~~   91 (93)
T 1afh_A           81 YTISTSTDCSR   91 (93)
T ss_dssp             SCCSTTCCSSS
T ss_pred             CCCCCCCCCcc
Confidence            99999999986

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.96  E-value=7.4e-32  Score=171.54  Aligned_cols=89  Identities=44%  Similarity=0.835  Sum_probs=82.5

Q ss_pred             CCCchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCC
Q 047252           16 AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNI   95 (105)
Q Consensus        16 ~~~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf   95 (105)
                      +++|+++...|.||++|++|++.|+ +||+++|+|++.|+|+.|||..|+|+++.+..+++||.++|++||++||+++||
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPY   79 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCSS
T ss_pred             CCChHHHHHhccCcHHHHcCCCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCCC
Confidence            3689999999999999999865677 999999999999999999999999998776777689999999999999999999


Q ss_pred             CCCCCccCCC
Q 047252           96 PISRSTNCAK  105 (105)
Q Consensus        96 ~i~~~~dC~~  105 (105)
                      |||++|||++
T Consensus        80 ~is~~~dC~~   89 (91)
T 1t12_A           80 KISPSTDCSK   89 (91)
T ss_dssp             CSSSSSCCTT
T ss_pred             CCCCCCCCcc
Confidence            9999999986

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.96  E-value=1.4e-31  Score=170.19  Aligned_cols=89  Identities=48%  Similarity=0.890  Sum_probs=83.3

Q ss_pred             CCchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCCC
Q 047252           17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIP   96 (105)
Q Consensus        17 ~~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf~   96 (105)
                      ++|+++...|.||++|++|++.|+++||+++|+|++.|+|+.|||..|+|+++.+..+++||.++|++||++||+++||+
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~~   80 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYK   80 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSSC
T ss_pred             CCHHHHHHhccCcHHHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCCC
Confidence            47999999999999999987779999999999999999999999999999987767776799999999999999999999


Q ss_pred             CCCCccCCC
Q 047252           97 ISRSTNCAK  105 (105)
Q Consensus        97 i~~~~dC~~  105 (105)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (91)
T 1siy_A           81 ISTSTNCNS   89 (91)
T ss_dssp             SCTTSCSST
T ss_pred             CCCCCCCcc
Confidence            999999986

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.96  E-value=1.2e-31  Score=170.79  Aligned_cols=90  Identities=46%  Similarity=0.950  Sum_probs=84.0

Q ss_pred             CCCchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCC
Q 047252           16 AVTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNI   95 (105)
Q Consensus        16 ~~~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf   95 (105)
                      +++|+++...|.||++|++|+++|+++||+++|+|+++|+|+.|||..|+|++.....+++||.++|++||++||+++||
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p~   80 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPY   80 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCSS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCCC
Confidence            36799999999999999998778999999999999999999999999999998777777689999999999999999999


Q ss_pred             CCCCCccCCC
Q 047252           96 PISRSTNCAK  105 (105)
Q Consensus        96 ~i~~~~dC~~  105 (105)
                      +||++|||++
T Consensus        81 ~is~~~dC~~   90 (92)
T 2alg_A           81 KISASTNCAT   90 (92)
T ss_dssp             CSSTTSCGGG
T ss_pred             CCCCCCCCcc
Confidence            9999999985

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.64  E-value=1.8e-17  Score=101.85  Aligned_cols=70  Identities=30%  Similarity=0.603  Sum_probs=58.4

Q ss_pred             CCCchhhhccccccHHHHcCC--CCCChhhhhhhhhccccCCCcccccccceeeccc---cccCCCCCHHHHhhchhcCC
Q 047252           16 AVTCGQVDASLASCISYLTAG--GSPSAVCCDGLKNLKTITPPTADRRAACDCVKAA---AARYPNIKEDAASSLPTKCG   90 (105)
Q Consensus        16 ~~~C~~~~~~l~~C~~yl~~~--~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~---~~~~~~in~~~a~~LP~~Cg   90 (105)
                      ..+|+++...|.||++|++++  ..|+++||+++|+        .|+  .|+|.+..   ...+ +||.+++++||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~~--~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADF--ACLCGYKNSPWLGSF-GVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CCH--HHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cCc--CCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence            468999999999999999974  4788999999998        133  78887654   4455 699999999999999


Q ss_pred             CCCCCC
Q 047252           91 VQMNIP   96 (105)
Q Consensus        91 v~~pf~   96 (105)
                      +++||.
T Consensus        71 v~~p~~   76 (77)
T 2rkn_A           71 LANAPT   76 (77)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            998864

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.54  E-value=4.7e-16  Score=93.32  Aligned_cols=58  Identities=31%  Similarity=0.640  Sum_probs=48.1

Q ss_pred             cccccHHHHcCCCCCChhhhhhhhhccccCCCccccccccee--eccccccCCCCCHHHHhhchhcCCCCCC
Q 047252           25 SLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDC--VKAAAARYPNIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        25 ~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p   94 (105)
                      .|.||++|+++++.||++||++||+           +..|+|  +++.... .+||.++|++||++||+++|
T Consensus         6 ~L~pC~~~v~~~~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYG-QYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHTTCCCCCHHHHHHHHH-----------HSSHHHHGGGCSTTH-HHHTCHHHHHHHHHHTSCCS
T ss_pred             hcccCHHHHcCCCCCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence            7999999999888899999999997           247888  5543222 15999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.52  E-value=8.5e-16  Score=92.71  Aligned_cols=63  Identities=24%  Similarity=0.605  Sum_probs=50.5

Q ss_pred             CchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCccccccccee--eccccccCCCCCHHHHhhchhcCCCCCC
Q 047252           18 TCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDC--VKAAAARYPNIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        18 ~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p   94 (105)
                      .|+..  .|.||++|++++++||++||++||+.           ..|+|  +++.... .+||.++|++||++||+++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRAQ-----------QGCFCQFAKDPRYG-RYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCCSTTHHHHHHHHHH-----------HHHHHHHTTCSSHH-HHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCCCCCCHHHHHhhCCC-----------CCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence            35544  89999999998888999999999972           47888  5543322 25999999999999999876

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=91.86  E-value=0.047  Score=33.19  Aligned_cols=68  Identities=19%  Similarity=0.451  Sum_probs=45.2

Q ss_pred             cccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhh-chhcCCCCCCCCCCCCccC
Q 047252           25 SLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASS-LPTKCGVQMNIPISRSTNC  103 (105)
Q Consensus        25 ~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~-LP~~Cgv~~pf~i~~~~dC  103 (105)
                      .|.-|.+-+.|.-.|..+||.-++.|.+.      .-+.|.|-.-...++  +|.+...+ |-..||...|    +.|.|
T Consensus        10 kLgvCanvL~g~~~~~~~CC~Ll~GL~dl------eAAvCLCtaik~Lgi--lnlpv~L~llln~Cgk~~P----~gF~C   77 (80)
T 1hyp_A           10 DLSICLNILGGSLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYP----SNATC   77 (80)
T ss_dssp             CCGGGGGGGGTCCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSC----CCCCC
T ss_pred             chhHHHHHhCcCCCCCCccchhhhCcchh------hhhhhhhhhccccce--eecChhHHHHHHHhCCcCc----CCCCC
Confidence            57889888864334567999999998753      235788852212222  46665555 5578999988    66766


Q ss_pred             C
Q 047252          104 A  104 (105)
Q Consensus       104 ~  104 (105)
                      .
T Consensus        78 ~   78 (80)
T 1hyp_A           78 P   78 (80)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=86.67  E-value=0.043  Score=42.43  Aligned_cols=54  Identities=17%  Similarity=0.516  Sum_probs=30.7

Q ss_pred             hhhhhhhhhccccCCCcccccccceeecccccc----C-C----CCCHHHHhhchhcCCCCCC--CCCCCC
Q 047252           41 AVCCDGLKNLKTITPPTADRRAACDCVKAAAAR----Y-P----NIKEDAASSLPTKCGVQMN--IPISRS  100 (105)
Q Consensus        41 ~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~----~-~----~in~~~a~~LP~~Cgv~~p--f~i~~~  100 (105)
                      .+||+.|+.+..      ..+|-|.-++..+..    . +    ..=..+|..||..||+..|  .+|++.
T Consensus       429 ~~cc~~l~~~~~------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~~  493 (500)
T 3ob4_A          429 ERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDVE  493 (500)
T ss_dssp             HHHHHHHGGGTT------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC--
T ss_pred             HHHHHHHHhCCc------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccCC
Confidence            589999998631      023444435433221    0 0    0113459999999999966  556553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-26
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-25

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 92.2 bits (229), Expect = 1e-26
 Identities = 30/89 (33%), Positives = 53/89 (59%)

Query: 17  VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPN 76
           + CGQVD+ +  C++Y+  G  PS  CC+G+++L      + DR+  C+C+K  A    N
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60

Query: 77  IKEDAASSLPTKCGVQMNIPISRSTNCAK 105
           +  + A+S+P+KC V +   IS   +C++
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 88.8 bits (220), Expect = 3e-25
 Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)

Query: 16  AVTCGQVDASLASCISYLTAGGS-PSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARY 74
           A++CGQV +++A CISY    GS PSA CC G+++L      TADRRAAC+C+K AAA  
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 75  PNIKEDAASSLPTKCGVQMNIPISRSTNCAK 105
             +    A+S+P+KCGV +   IS ST+C++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.97
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.97
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.07
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.0
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	88.44
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	82.33
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	82.27

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.97  E-value=6.4e-33  Score=174.96  Aligned_cols=89  Identities=34%  Similarity=0.846  Sum_probs=83.9

Q ss_pred             CCchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCCCC
Q 047252           17 VTCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMNIP   96 (105)
Q Consensus        17 ~~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~pf~   96 (105)
                      ++|+++...|.||++||+|+++|++.||+++++|+++++|+.|||++|+|+++....+.+||.+|+++||++||+++|||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~p   80 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYT   80 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCSC
T ss_pred             CCHHHHHHHHHhhHHHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCCC
Confidence            57999999999999999998889999999999999999999999999999998766665799999999999999999999


Q ss_pred             CCCCccCCC
Q 047252           97 ISRSTNCAK  105 (105)
Q Consensus        97 i~~~~dC~~  105 (105)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (91)
T d1mida_          81 ISPDIDCSR   89 (91)
T ss_dssp             CCTTCCGGG
T ss_pred             CCCCCCCCC
Confidence            999999986

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=1.1e-32  Score=174.44  Aligned_cols=90  Identities=48%  Similarity=0.935  Sum_probs=83.9

Q ss_pred             CCCchhhhccccccHHHHcCCC-CCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhhchhcCCCCCC
Q 047252           16 AVTCGQVDASLASCISYLTAGG-SPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        16 ~~~C~~~~~~l~~C~~yl~~~~-~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p   94 (105)
                      +++|+++...|.||++||+|++ .|++.||+++++|+++++|+.|||++|+|+++....+.+||.+|+++||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            4789999999999999999875 699999999999999999999999999999987666557999999999999999999


Q ss_pred             CCCCCCccCCC
Q 047252           95 IPISRSTNCAK  105 (105)
Q Consensus        95 f~i~~~~dC~~  105 (105)
                      |||++++||++
T Consensus        81 ~pis~~~dCs~   91 (93)
T d1fk5a_          81 YTISTSTDCSR   91 (93)
T ss_dssp             SCCSTTCCGGG
T ss_pred             CCCCCCCCCCc
Confidence            99999999986

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.07  E-value=1e-11  Score=72.61  Aligned_cols=63  Identities=32%  Similarity=0.659  Sum_probs=51.3

Q ss_pred             chhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCC-CCCHHHHhhchhcCCCCCC
Q 047252           19 CGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP-NIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        19 C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~-~in~~~a~~LP~~Cgv~~p   94 (105)
                      |+..  .|.||++.+++++.||.+||+.+|+           |..|+|.+.....+. .||..++..+.+.||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~g~~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHCCCCCHHHHHHHHH-----------HGGGHHHHTTCTTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcCCCCcHHHHHHHHh-----------cCCccceecCCccHHHHcCCHHHHHHHHhcCCCCC
Confidence            6555  7999999999988999999999998           345666544444443 5999999999999999887

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.00  E-value=1.2e-11  Score=72.66  Aligned_cols=64  Identities=27%  Similarity=0.661  Sum_probs=51.5

Q ss_pred             CchhhhccccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCC-CCCHHHHhhchhcCCCCCC
Q 047252           18 TCGQVDASLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYP-NIKEDAASSLPTKCGVQMN   94 (105)
Q Consensus        18 ~C~~~~~~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~-~in~~~a~~LP~~Cgv~~p   94 (105)
                      .|+..  .|.||++.+++++.||.+||+.+|+           |..|+|.+.....+. .||..++..+...||+++|
T Consensus         2 ~C~p~--~L~~C~~ai~~g~~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCCSTTHHHHHHHHH-----------HHHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhCCCCCcHHHHHHHHh-----------cCCccceeccCccHHHHcCCHHHHHHHHhcCCCCC
Confidence            36665  7999999999999999999999998           345666543334442 5999999999999999887

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=88.44  E-value=0.067  Score=30.66  Aligned_cols=68  Identities=19%  Similarity=0.451  Sum_probs=44.7

Q ss_pred             cccccHHHHcCCCCCChhhhhhhhhccccCCCcccccccceeeccccccCCCCCHHHHhh-chhcCCCCCCCCCCCCccC
Q 047252           25 SLASCISYLTAGGSPSAVCCDGLKNLKTITPPTADRRAACDCVKAAAARYPNIKEDAASS-LPTKCGVQMNIPISRSTNC  103 (105)
Q Consensus        25 ~l~~C~~yl~~~~~P~~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~~~in~~~a~~-LP~~Cgv~~pf~i~~~~dC  103 (105)
                      .+.-|.+-+.+...+..+||.-++.|.+.      .-+.|.|-.-.+..+  +|.....+ |-..||-..|    ++|.|
T Consensus         5 Klg~C~nvLg~~~~~~~~CC~Ll~GL~dl------eAAvCLCtaika~~l--lnvpv~l~llln~Cgk~~P----~gF~C   72 (75)
T d1hypa_           5 DLSICLNILGGSLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYP----SNATC   72 (75)
T ss_dssp             CCGGGGGGGGTCCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSC----CCCCC
T ss_pred             chhhHHHHhcCccCCCCCcchHHhhHHHH------HHHHHHHHHHHHhhh--ccccchHHHHHHHcCCcCc----CCCcC
Confidence            46678887776555667999999988653      235788853222333  55554443 5568999988    66766


Q ss_pred             C
Q 047252          104 A  104 (105)
Q Consensus       104 ~  104 (105)
                      -
T Consensus        73 P   73 (75)
T d1hypa_          73 P   73 (75)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=82.33  E-value=0.23  Score=29.96  Aligned_cols=69  Identities=25%  Similarity=0.382  Sum_probs=42.5

Q ss_pred             CCCchhhh---ccccccHHHHcC-----C-C------CCC-hhhhhhhhhccccCCCcccccccceeeccccccC-C--C
Q 047252           16 AVTCGQVD---ASLASCISYLTA-----G-G------SPS-AVCCDGLKNLKTITPPTADRRAACDCVKAAAARY-P--N   76 (105)
Q Consensus        16 ~~~C~~~~---~~l~~C~~yl~~-----~-~------~P~-~~CC~~l~~l~~~a~t~~~~~~~C~Cl~~~~~~~-~--~   76 (105)
                      .-.|-.-+   ..|..|-.||.-     + .      .+. ..||+-|+.+..        ++.|.=|+..+... .  .
T Consensus         8 ~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~~~--------~CrC~~L~~avq~q~~q~~   79 (103)
T d1s6da_           8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDE--------KCMCPAIMMMLNEPMWIRM   79 (103)
T ss_dssp             SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHSCG--------GGSSHHHHHHTTSTTCSST
T ss_pred             cccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcCCC--------CCcCHHHHHHHHHHHhHHH
Confidence            44566322   469999999962     1 1      122 589999999653        44444455443221 1  1


Q ss_pred             C--CHHHHhhchhcCCCC
Q 047252           77 I--KEDAASSLPTKCGVQ   92 (105)
Q Consensus        77 i--n~~~a~~LP~~Cgv~   92 (105)
                      +  -...|.+||+.||+.
T Consensus        80 ~~~~~q~Ak~LPs~C~i~   97 (103)
T d1s6da_          80 RDQVMSMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhChHhcCCC
Confidence            1  145788999999997