Citrus Sinensis ID: 047254

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830------
MRENLEGCSSSKKPRQDEGGKEAYLTFGSEEEEEEERAGHSSSRGKQLMVDRGVVSNLTPLRSLGCIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNSTRFDSASLKTPCSQTTPSSKQVKIMRGSGKKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDDEYKNDLIENEDGNAEARNGSTDILTSSELLPLDVHPVKAGLATDDATDMNFSEDEESE
ccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEcccccEEEEEcccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccccEEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHccccEEEcccHHHHHHHHHHHHHccHHHHHHHHHHHccEEEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccEEccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHEEccccHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHcccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHcEEEccccccEEEEEcccHccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHcccccHcHHHccccccccccccccccHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccHHHHHHcccccccccccccccccccccccccHHcccccHccccccHHHcccccccEcccccccccccccccccccccccccccccccccc
mrenlegcssskkprqdeggkeayltfgseeeeeeeraghsssrgkqlmvdrgvvsnltplrslgcidpgwehgvaqdqrkkkvkcnycgkvvsggINRFKQHLARIQgevapckdapedVYLKMKENMkwhrsgrrhkwcgtkeisdshMQSNIEDEVNEQEKDALHRMNSDRKMIGDKRQRKELRVAFnemspcrdIESLlnstrfdsaslktpcsqttpsskqvkimrgsgkkSQKEIISAICKFFYyagvpleaanSQYFHNMLELVAQYgqglvgppsqliFGDLLQEEIETIRNNLAEHRASWAVTGcsvmadswtdsesrtlinlfvssphglyflssvdatdIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRknlfwtpcaTYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQseiwtsswfsksdkgkevENIVLNAKFWKKVLYVVRSVNPIMKVLQKVdtgqslsmpyvyndMYRAKLAIQSfhgddvrkygpfwnvidnhwdllghhplYVAAYflnpsyryrphfvaypEVVRGLNECIVRLEPDKVRRIYAMSQIsdyttakadfgtelaistrtelepaawwqqhgissLQLQQIAVRILSQTcssigcehkwsiydqvhgqrHSRAAQKRINDLIYVHYNlrlrechikrrsddsisLEGALREHLLDDWIIEAEkqalpededifcdergaaydddeykndlienedgnaearngstdiltssellpldvhpvkaglatddatdmnfsedeese
mrenlegcssskkprqdeggkeayltfgseeeeeeeraghsssrgkqlmvDRGVVSNLTPLRSLGCIDPGwehgvaqdqrkkkvKCNYCGKVVSGGINRFKQHLARIqgevapckdapEDVYLKMKenmkwhrsgrrhkwcGTKEISDSHMQSNIEDEVNEQEKDALhrmnsdrkmigdkrqRKELRVAFNEMSPCRDIESLLNstrfdsaslktpcsqttpsskqvkimrgsgkksQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVvqvitqntpsykSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEiwtsswfsksdkgKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSqisdyttakaDFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNlrlrechikrrsddsislEGALREHLLDDWIIEAEkqalpedediFCDERGAAYDDDEYKNDLIEnedgnaearnGSTDILTSSELLPLDVHPVKAGLATDDATDMNFSEDEESE
MRENLEGCSSSKKPRQDEGGKEAYLTFGSeeeeeeeRAGHSSSRGKQLMVDRGVVSNLTPLRSLGCIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNSTRFDSASLKTPCSQTTPSSKQVKIMRGSGKKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDDEYKNDLIENEDGNAEARNGSTDILTSSELLPLDVHPVKAGLATDDATDMNFSEDEESE
*************************************************VDRGVVSNLTPLRSLGCIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCG*************************************************************************************************EIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNT*********LEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAY*************************************************************
**********************************************************************WEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDALHRMNSDRKMIGDK******************************************************KKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLR***************LEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDDEYKNDLI***************************************************
**********************AYLTF******************KQLMVDRGVVSNLTPLRSLGCIDPGWEHG*********VKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNSTRFDS*****************************EIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQ*********AQKRINDLIYVHYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDDEYKNDLIENEDGNAEARNGSTDILTSSELLPLDVHPVKAGLATDDATD**********
*****************************************************************CIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRS***************************************************************************************************GKKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDDEYKNDLIENE**********************D****K*******A*D**********
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MRENLEGCSSSKKPRQDEGGKEAYLTFGSEEEEEEERAGHSSSRGKQLMVDRGVVSNLTPLRSLGCIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDALHRMNSDRKMIGDKRQRKELRVAFNEMSPCRDIESLLNSTRFDSASLKTPCSQTTPSSKQVKIMRGSGKKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFxxxxxxxxxxxxxxxxxxxxxWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDDEYKNDLIENEDGNAEARNGSTDILTSSELLPLDVHPVKAGLATDDATDMNFSEDEESE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query836
297736810906 unnamed protein product [Vitis vinifera] 0.995 0.918 0.690 0.0
225432175902 PREDICTED: uncharacterized protein LOC10 0.995 0.922 0.690 0.0
255556576906 DNA binding protein, putative [Ricinus c 0.976 0.900 0.641 0.0
307136199900 DNA binding protein [Cucumis melo subsp. 0.995 0.924 0.614 0.0
449459864 1018 PREDICTED: uncharacterized protein LOC10 0.984 0.808 0.621 0.0
356530495902 PREDICTED: uncharacterized protein LOC10 0.988 0.915 0.632 0.0
356556462900 PREDICTED: uncharacterized protein LOC10 0.991 0.921 0.616 0.0
357450325901 hypothetical protein MTR_2g045480 [Medic 0.991 0.920 0.600 0.0
147799625706 hypothetical protein VITISV_033845 [Viti 0.757 0.896 0.710 0.0
11994683883 unnamed protein product [Arabidopsis tha 0.889 0.842 0.541 0.0
>gi|297736810|emb|CBI26011.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/839 (69%), Positives = 682/839 (81%), Gaps = 7/839 (0%)

Query: 1   MRENLEGCSSSKKPRQDEGGKEAYLTFGSEEEEEEE--RAGHSSSRGKQLMVDRGVVSNL 58
           MRENLEGC S+KKPRQ E     YL F   ++EEEE   AG+ S +GKQLM DR +V NL
Sbjct: 72  MRENLEGCRSNKKPRQSEDDGHTYLNFHQNDDEEEEEEHAGYRS-KGKQLMSDRNLVINL 130

Query: 59  TPLRSLGCIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPCKDAP 118
            PLRSLG +DPGWEHGVAQD+RKKKVKCNYC K+VSGGINRFKQHLARI GEVAPCK+AP
Sbjct: 131 APLRSLGYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKNAP 190

Query: 119 EDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDALHRMNSDRKMIG 178
           E+VYLK+KENMKWHR+GRRH+    KEIS  +M S+ +DE +EQ++DALHRMN +  +IG
Sbjct: 191 EEVYLKIKENMKWHRTGRRHRRPDAKEISAFYMNSDNDDEEDEQDEDALHRMNKENLIIG 250

Query: 179 DKRQRKELRVAFNEMSPCRDIESLLNSTRFDSASLKTPCSQTTPSSKQVKIMRGSGKKSQ 238
           +KR  K+LR  F  +SP    E  L  +R DS   KTP SQ   S KQVK+  GS KK++
Sbjct: 251 EKRLSKDLRKTFRGISPGSGSEPSLRRSRLDSVVPKTPKSQKALSYKQVKVKTGSSKKTR 310

Query: 239 KEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDLLQEEIETI 298
           KE+ISAICKFFY+AGVPL AANS YFH MLELV QYGQGLVGPP+QLI G  LQEEI TI
Sbjct: 311 KEVISAICKFFYHAGVPLHAANSPYFHKMLELVGQYGQGLVGPPTQLISGRFLQEEIATI 370

Query: 299 RNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNL 358
           +N LAE++ASWA+TGCS+ ADSW D++ RTLIN+ VS PHG+YF+SSVDATDIV+DA+NL
Sbjct: 371 KNYLAEYKASWAITGCSIKADSWRDAQGRTLINILVSCPHGIYFVSSVDATDIVDDATNL 430

Query: 359 FKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLN 418
           FKLLDKVVEEMGEENVVQVIT+NTPSYK+AGKMLEEKR++LFWTPCA YCID+ML+ F+ 
Sbjct: 431 FKLLDKVVEEMGEENVVQVITENTPSYKAAGKMLEEKRRSLFWTPCAAYCIDQMLEDFIG 490

Query: 419 LKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDHR 478
           +K V +CME  QKITKFIYN I LLNLMKKEFTQGQELL P+V+R ASSF TLQ+LLDHR
Sbjct: 491 IKLVGECMEKGQKITKFIYNRIWLLNLMKKEFTQGQELLRPAVSRCASSFATLQSLLDHR 550

Query: 479 IDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTGQ 538
           I L+R+FQS  W SS FSKS+KGKEVE IVLNA FWKKV YV +SV+P+++VLQKVD+ +
Sbjct: 551 IGLKRLFQSNKWLSSRFSKSEKGKEVEKIVLNATFWKKVQYVRKSVDPLVQVLQKVDSVE 610

Query: 539 SLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYR 598
           SLSMP +YNDMYRAKLAI+S HGDD RKYGPFW VIDNHW  L HHPLY+AAYFLNPSYR
Sbjct: 611 SLSMPSIYNDMYRAKLAIRSTHGDDARKYGPFWAVIDNHWSSLFHHPLYMAAYFLNPSYR 670

Query: 599 YRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTELAISTRTELEP 658
           YR  F+ +PEVVRGLNECIVRLEPD +RRI A  QISD+ +AKADFGTELAISTRTEL+P
Sbjct: 671 YRSDFLVHPEVVRGLNECIVRLEPDNMRRISASMQISDFNSAKADFGTELAISTRTELDP 730

Query: 659 AAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYV 718
           AAWWQQHGI+ L+LQ+IAVRILSQTCSS GCEH WS YDQ+H + H+R AQKR+NDLIYV
Sbjct: 731 AAWWQQHGINCLELQRIAVRILSQTCSSFGCEHNWSTYDQIHRESHNRLAQKRLNDLIYV 790

Query: 719 HYNLRLRECHIKRRSDDSISLEGALREHLLDDWIIEAEKQALPEDEDIFCDERGAAYDDD 778
           HYNLRLRE  + +RS+D +SL+  L E LLDDWI+EAE   + EDE+I  +E       D
Sbjct: 791 HYNLRLRERQLSKRSNDVMSLDSILLESLLDDWIVEAENPTVQEDEEIPYNEMDHT---D 847

Query: 779 EYKNDLIENEDGNAEARNGSTDILTSSELLPLD-VHPVKAGLATDDATDMNFSEDEESE 836
            Y+NDL+E EDG A+ R  S +++T S + PLD V+P  AG+ATDD TD+NF  D+ S+
Sbjct: 848 AYENDLMEYEDGTADGRKASLEMVTLSSVEPLDIVNPASAGVATDDDTDLNFLGDDLSD 906

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432175|ref|XP_002274968.1| PREDICTED: uncharacterized protein LOC100247647 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556576|ref|XP_002519322.1| DNA binding protein, putative [Ricinus communis] gi|223541637|gb|EEF43186.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|307136199|gb|ADN34037.1| DNA binding protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449459864|ref|XP_004147666.1| PREDICTED: uncharacterized protein LOC101213851 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530495|ref|XP_003533816.1| PREDICTED: uncharacterized protein LOC100814604 [Glycine max] Back     alignment and taxonomy information
>gi|356556462|ref|XP_003546544.1| PREDICTED: uncharacterized protein LOC100784818 [Glycine max] Back     alignment and taxonomy information
>gi|357450325|ref|XP_003595439.1| hypothetical protein MTR_2g045480 [Medicago truncatula] gi|355484487|gb|AES65690.1| hypothetical protein MTR_2g045480 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147799625|emb|CAN75144.1| hypothetical protein VITISV_033845 [Vitis vinifera] Back     alignment and taxonomy information
>gi|11994683|dbj|BAB02921.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query836
TAIR|locus:2093606877 AT3G17450 [Arabidopsis thalian 0.925 0.882 0.528 1.9e-218
TAIR|locus:2129600768 AT4G15020 [Arabidopsis thalian 0.813 0.885 0.323 2.1e-91
TAIR|locus:2017864651 AT1G79740 [Arabidopsis thalian 0.642 0.824 0.327 1e-88
TAIR|locus:2090429761 AT3G22220 [Arabidopsis thalian 0.811 0.890 0.311 5.3e-88
TAIR|locus:2089240605 AT3G13020 [Arabidopsis thalian 0.564 0.780 0.285 1.4e-57
TAIR|locus:2089230572 AT3G13010 [Arabidopsis thalian 0.636 0.930 0.262 1e-54
TAIR|locus:2089250544 AT3G13030 [Arabidopsis thalian 0.568 0.873 0.278 7.4e-53
TAIR|locus:504955161 509 AT5G33406 "AT5G33406" [Arabido 0.398 0.654 0.333 7.3e-51
TAIR|locus:2018655294 AT1G43260 "AT1G43260" [Arabido 0.282 0.802 0.345 2.6e-36
TAIR|locus:504955173433 AT5G31412 [Arabidopsis thalian 0.161 0.311 0.379 2.5e-31
TAIR|locus:2093606 AT3G17450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2110 (747.8 bits), Expect = 1.9e-218, P = 1.9e-218
 Identities = 429/811 (52%), Positives = 565/811 (69%)

Query:     1 MRENLEGCSSSKKPRQDEGGK-EAYLTFGSXXXXXXX-----RAGHSSSRGKQLMVDRGV 54
             M+ENL    S+KK RQ E    ++  +F              R     S+GK  + D  +
Sbjct:    68 MKENL--VRSTKKLRQSEDNSGQSCSSFHQSNNDDEADEEERRCWSIRSKGKLGLSDGSL 125

Query:    55 VSNLTPLRSLGCIDPGWEHGVAQDQRKKKVKCNYCGKVVSGGINRFKQHLARIQGEVAPC 114
                   LRS G IDPGWEHG+AQD+RKKKVKCNYC K+VSGGINRFKQHLARI GEVAPC
Sbjct:   126 ------LRSSGYIDPGWEHGIAQDERKKKVKCNYCNKIVSGGINRFKQHLARIPGEVAPC 179

Query:   115 KDAPEDVYLKMKENMKWHRSGRRHKWCGTKEISDSHMQSNIEDEVNEQEKDA--LHRMNS 172
             K APE+VY+K+KENMKWHR+G+R       E+     ++  +D   E++++    +  + 
Sbjct:   180 KTAPEEVYVKIKENMKWHRAGKRQNR-PDDEMGALTFRTVSQDPDQEEDREDHDFYPTSQ 238

Query:   173 DRKMIGDKRQRKELRVAFNEMSPCRDIESLLNSTRFDSASLKTPCSQTTPSSKQVKIMRG 232
             DR M+G+ R  K+ R +F+  +  R + S   + R      ++P S     SKQ K+   
Sbjct:   239 DRLMLGNGRFSKDKRKSFDSTN-MRSV-SEAKTKRARMIPFQSPSS-----SKQRKLYSS 291

Query:   233 SGKK--SQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVGPPSQLIFGDL 290
                +  S+K++ S+I KF ++ GVP EAANS YF  M+EL+  YG+G V P SQL  G L
Sbjct:   292 CSNRVVSRKDVTSSISKFLHHVGVPTEAANSLYFQKMIELIGMYGEGFVVPSSQLFSGRL 351

Query:   291 LQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATD 350
             LQEE+ TI++ L E+R+SW VTGCS+MAD+WT++E + +I+  VS P G+YF SS+DATD
Sbjct:   352 LQEEMSTIKSYLREYRSSWVVTGCSIMADTWTNTEGKKMISFLVSCPRGVYFHSSIDATD 411

Query:   351 IVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCID 410
             IVEDA +LFK LDK+V+++GEENVVQVITQNT  ++SAGK+LEEKRKNL+WTPCA +C +
Sbjct:   412 IVEDALSLFKCLDKLVDDIGEENVVQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTE 471

Query:   411 KMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTT 470
              +L+ F  L+ V +C+E AQ+IT+FIYN   LLNLMK EFTQG +LL P+V R AS FTT
Sbjct:   472 LVLEDFSKLEFVSECLEKAQRITRFIYNQTWLLNLMKNEFTQGLDLLRPAVMRHASGFTT 531

Query:   471 LQNLLDHRIDLRRMFQSEIWT-SSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMK 529
             LQ+L+DH+  LR +FQS+ W  S   +KS++G+EVE +VL+A FWKKV YV++SV+P+M+
Sbjct:   532 LQSLMDHKASLRGLFQSDGWILSQTAAKSEEGREVEKMVLSAVFWKKVQYVLKSVDPVMQ 591

Query:   530 VLQKV-DTGQSLSMPYVYNDMYRAKLAIQSFHGDDVRKYGPFWNVIDNHWDLLGHHPLYV 588
             V+  + D G  LSMPY Y  M  AK+AI+S H DD RKYGPFW VI+  W+ L HHPLYV
Sbjct:   592 VIHMINDGGDRLSMPYAYGYMCCAKMAIKSIHSDDARKYGPFWRVIEYRWNPLFHHPLYV 651

Query:   589 AAYFLNPSYRYRPHFVAYPEVVRGLNECIVRLEPDKVRRIYAMSQISDYTTAKADFGTEL 648
             AAYF NP+Y+YRP F+A  EVVRG+NECIVRLEPD  RRI A+ QI DYT AKADFGT++
Sbjct:   652 AAYFFNPAYKYRPDFMAQSEVVRGVNECIVRLEPDNTRRITALMQIPDYTCAKADFGTDI 711

Query:   649 AISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAA 708
             AI TRTEL+P+AWWQQHGIS L+LQ++AVRILS TCSS+GCE KWS+YDQV+ Q  S+  
Sbjct:   712 AIGTRTELDPSAWWQQHGISCLELQRVAVRILSHTCSSVGCEPKWSVYDQVNSQCQSQFG 771

Query:   709 QKRINDLIYVHYNLRLRECHIKRR---SDDSI-SLEGALREHLLDDWIIEAEKQALPEDE 764
             +K   DL YVHYNLRLRE  +K+R    D+   +L  AL + LL DW++ +EK+   E+E
Sbjct:   772 KKSTKDLTYVHYNLRLREKQLKQRLHYEDEPPPTLNHALLDRLLPDWLVTSEKE---EEE 828

Query:   765 DIFCDERGAAYD--DDEYKNDLIENEDGNAE 793
              +  ++R    D  DDE + +    E GN +
Sbjct:   829 ALHGEDRAEKEDHEDDEEEEEKFYMESGNVD 859
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0046983 "protein dimerization activity" evidence=IEA
TAIR|locus:2129600 AT4G15020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017864 AT1G79740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090429 AT3G22220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089240 AT3G13020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089230 AT3G13010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089250 AT3G13030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955161 AT5G33406 "AT5G33406" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018655 AT1G43260 "AT1G43260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955173 AT5G31412 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G17450
hAT dimerisation domain-containing protein; hAT dimerisation domain-containing protein; FUNCTIONS IN- protein dimerization activity, DNA binding; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- HAT dimerisation (InterPro-IPR008906), Zinc finger, BED-type predicted (InterPro-IPR003656), Protein of unknown function DUF659 (InterPro-IPR007021), Protein of unknown function DUF1544 (InterPro-IPR011523); BEST Arabidopsis thaliana protein match is- DNA binding / [...] (877 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query836
pfam04937153 pfam04937, DUF659, Protein of unknown function (DU 7e-67
pfam0289243 pfam02892, zf-BED, BED zinc finger 8e-10
pfam0569982 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation 4e-04
>gnl|CDD|203127 pfam04937, DUF659, Protein of unknown function (DUF 659) Back     alignment and domain information 
 Score =  218 bits (558), Expect = 7e-67
 Identities = 82/153 (53%), Positives = 108/153 (70%)

Query: 281 PPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGL 340
           P  + + G LLQEE   I++ L E + SW  TGCS++AD W+D++ R LIN  V  P G 
Sbjct: 1   PSYEDLRGTLLQEEKSEIQDYLRELKKSWKTTGCSILADGWSDNKGRPLINFLVYCPAGP 60

Query: 341 YFLSSVDATDIVEDASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLF 400
            FL SVDA+DI +DA  LF+LLD VVEE+G ENVVQVIT NTP+Y++AGK+LE+K  ++F
Sbjct: 61  VFLKSVDASDIKKDADYLFELLDSVVEEVGVENVVQVITDNTPNYRAAGKLLEQKYPSIF 120

Query: 401 WTPCATYCIDKMLDGFLNLKSVWKCMEMAQKIT 433
           WTPCA +CI+ ML+    L  V + +E AQ IT
Sbjct: 121 WTPCAAHCINLMLEDIGKLDWVSEIIEKAQTIT 153

Transposase-like protein with no known function. Length = 153
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger Back     alignment and domain information
>gnl|CDD|218702 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 836
PF04937153 DUF659: Protein of unknown function (DUF 659); Int 100.0
KOG1121641 consensus Tam3-transposase (Ac family) [Replicatio 100.0
PF0569986 Dimer_Tnp_hAT: hAT family C-terminal dimerisation 99.61
PF14291235 DUF4371: Domain of unknown function (DUF4371) 99.02
PF0289245 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc 98.3
smart0061450 ZnF_BED BED zinc finger. DNA-binding domain in chr 96.88
PF14372101 DUF4413: Domain of unknown function (DUF4413) 96.29
PF1068368 DBD_Tnp_Hermes: Hermes transposase DNA-binding dom 95.16
PF12017236 Tnp_P_element: Transposase protein; InterPro: IPR0 83.91
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function Back     alignment and domain information 
Probab=100.00  E-value=1.9e-39  Score=314.31  Aligned_cols=153  Identities=48%  Similarity=0.838  Sum_probs=150.9

Q ss_pred             CChhhhhhhHHHHHHHHHHHHHHHHHhhhhccceEEEecccccCCCCeEEEEEeecCCcceEEEeeeCCCCCcchHHHHH
Q 047254          281 PPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDSESRTLINLFVSSPHGLYFLSSVDATDIVEDASNLFK  360 (836)
Q Consensus       281 PS~~~l~~~iL~~~~~~v~~~l~~~~~~w~~~~~sI~~D~WTd~~~~~~l~~~v~~~~g~~fL~svd~s~~~htge~I~e  360 (836)
                      ||+++|++++|++++++++..++.+++.|..+||||++|+|||..++++|||+|+|+.|++||+++|++...|||++|++
T Consensus         1 PS~~~Lr~~lL~~~~~~v~~~~~~~k~~w~~~Gcsi~~DgWtd~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~   80 (153)
T PF04937_consen    1 PSYHELRGPLLDKEYKEVKEQVKEHKKSWKRTGCSIMSDGWTDRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFE   80 (153)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEecCcCCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCccEEEEEEeCCcchhhhhhHHHHhcCCccccCchHHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 047254          361 LLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKIT  433 (836)
Q Consensus       361 ~l~~viee~g~~nVv~vvTDnasn~~~a~~lL~~k~p~i~~~~C~aH~LnLvl~di~k~~~v~~~i~k~~~Iv  433 (836)
                      +|+++|+++|.+||+||||||++||.+|+++|+++||++||+||+|||||||++||++++++++++.+|+.|+
T Consensus        81 ll~~vIeeVG~~nVvqVVTDn~~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~k~~~i~~vi~~ak~it  153 (153)
T PF04937_consen   81 LLDEVIEEVGEENVVQVVTDNASNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIGKLPWIKEVIEKAKAIT  153 (153)
T ss_pred             HHHHHHHHhhhhhhhHHhccCchhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHhcChHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair] Back     alignment and domain information
>PF05699 Dimer_Tnp_hAT: hAT family C-terminal dimerisation region; InterPro: IPR008906 This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily) Back     alignment and domain information
>PF14291 DUF4371: Domain of unknown function (DUF4371) Back     alignment and domain information
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00614 ZnF_BED BED zinc finger Back     alignment and domain information
>PF14372 DUF4413: Domain of unknown function (DUF4413) Back     alignment and domain information
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [] Back     alignment and domain information
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query836
2bw3_A534 Transposase; DNA recombination, transposition; 2.0 2e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B Length = 534 Back     alignment and structure
 Score =  134 bits (338), Expect = 2e-33
 Identities = 76/556 (13%), Positives = 175/556 (31%), Gaps = 81/556 (14%)

Query: 223 SSKQVKIMRGSGKKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGLVG-- 280
           S  Q + ++      +KE I    ++      P  A +   F +M++   +         
Sbjct: 1   SHMQSRELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHV 60

Query: 281 ------PPSQLIFGDLLQEEIETIRNNLAEHRASWAVTGCSVMADSWTDS-ESRTLINLF 333
                 P    +   +  +  E       E +++    G S   D WTD+   R  + + 
Sbjct: 61  NVEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGASATIDLWTDNYIKRNFLGVT 120

Query: 334 VSSPHGLYFLSSVDATDIVE----DASNLFKLLDKVVEEMGEENVVQVITQNTPSYKSAG 389
           +           +     ++     A N++K L  +  +   E++  +           G
Sbjct: 121 LHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVT-----DRG 175

Query: 390 KMLEEKRKNLFWTPCATYCIDKMLDGFLNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKE 449
             + +   N     C+++ +  +L+           + M     K I  + +  NL  + 
Sbjct: 176 ANVVKSLANNIRINCSSHLLSNVLENSFEE---TPELNMPILACKNIVKYFKKANLQHRL 232

Query: 450 FTQGQELLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVL 509
                 L     TR+ S++T L+++LD+   + ++                        +
Sbjct: 233 R---SSLKSECPTRWNSTYTMLRSILDNWESVIQILSEAGE---------------TQRI 274

Query: 510 NAKFWKKVLYVVRSVNPIMKVLQKVDTGQSLSMPYVYNDMYRAKLAIQ---SFHGDDVRK 566
                  +  +V  ++   ++ +++ T  S S+ +V   + + K           D  + 
Sbjct: 275 VHINKSIIQTMVNILDGFERIFKELQTCSSPSLCFVVPSILKVKEICSPDVGDVADIAKL 334

Query: 567 YGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRG----LNECIVRLEP 622
                  +   W+       Y A +F  P+   +   VA  +          E I R+  
Sbjct: 335 KVNIIKNVRIIWEENLSIWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSS 394

Query: 623 DKVRRIYAMSQISDYTTAKADFG---------------------TELAISTRTELE---- 657
                   ++Q    +    D                        E  +    E E    
Sbjct: 395 FNELSATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRK 454

Query: 658 ----------PAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRA 707
                        WW  +     +L ++A+ +LS   SS   E  +S+   +  ++ +R 
Sbjct: 455 EIVILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRI 514

Query: 708 AQKRINDLIYVHYNLR 723
            Q+ ++ L++++   +
Sbjct: 515 GQQTVDSLLFLNSFYK 530
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query836
2bw3_A534 Transposase; DNA recombination, transposition; 2.0 100.0
2djr_A76 Zinc finger BED domain-containing protein 2; C2H2 97.51
2ct5_A73 Zinc finger BED domain containing protein 1; DREF 97.17
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B Back     alignment and structure
Probab=100.00  E-value=1.1e-60  Score=560.46  Aligned_cols=452  Identities=15%  Similarity=0.202  Sum_probs=356.0

Q ss_pred             cchhHHHHHHHHHHHHHHcCCccccccCHHHHHHHHHHHHcCCCC--------CCCChhhhhhhHHHHHHHHHHHHHHHH
Q 047254          234 GKKSQKEIISAICKFFYYAGVPLEAANSQYFHNMLELVAQYGQGL--------VGPPSQLIFGDLLQEEIETIRNNLAEH  305 (836)
Q Consensus       234 ~~~~~~~~~~~Iar~i~~~~iPfs~ve~~~F~~ml~~l~~~~p~~--------~~PS~~~l~~~iL~~~~~~v~~~l~~~  305 (836)
                      ....++++.++|++||+.+++||+++++|+|+.|++.+++.||+|        .+||++++++.+++...+..+..++.+
T Consensus        12 ~~~~~~~~~~~l~~~i~~~~~Pf~~ve~~~F~~~l~~l~~~~p~~~~~~~~~~~~ps~~~~~~~i~~~~~~~~~~l~~~l   91 (534)
T 2bw3_A           12 SADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIGREI   91 (534)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCGGGGGCHHHHHHHHHHHHHHHHHCSCBCHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHhcCCcchhhCCHHHHHHHHHHHhhhhhhccccchhhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999997666644        699999999998876444444556777


Q ss_pred             HhhhhccceEEEecccccC-CCCeEEEEEeecCCcc----eEEEeeeCCCCCcchHHHHHHHHHHHHHhcCcc--EEEEE
Q 047254          306 RASWAVTGCSVMADSWTDS-ESRTLINLFVSSPHGL----YFLSSVDATDIVEDASNLFKLLDKVVEEMGEEN--VVQVI  378 (836)
Q Consensus       306 ~~~w~~~~~sI~~D~WTd~-~~~~~l~~~v~~~~g~----~fL~svd~s~~~htge~I~e~l~~viee~g~~n--Vv~vv  378 (836)
                      +..|...+|+|++|+|||. +++++|+|+||++++.    .+|.........|||++|++.|.++|++||+++  ++++|
T Consensus        92 ~~~~~~~~~sl~~D~wt~~~~~~~~l~i~v~~i~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~v  171 (534)
T 2bw3_A           92 KSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFV  171 (534)
T ss_dssp             HHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEE
T ss_pred             HhhhcCCceEEEEecccCCCCCcceeEEEEEEeeCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEE
Confidence            7778779999999999998 6899999999997532    244454444436999999999999999999965  88999


Q ss_pred             EeCCcchhhhhhHHHHhcCCccccCchHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccCcccc
Q 047254          379 TQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGF-LNLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELL  457 (836)
Q Consensus       379 TDnasn~~~a~~lL~~k~p~i~~~~C~aH~LnLvl~di-~k~~~v~~~i~k~~~Iv~fi~~s~~~l~~~r~k~~~~~~Li  457 (836)
                      ||||+||+++.+       ..+|+||+||+|||+++++ .+++.+..++.++++|++||++|+.+.     ++  ...|+
T Consensus       172 tDnasn~~~~~~-------~~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~~-----~l--~~~l~  237 (534)
T 2bw3_A          172 TDRGANVVKSLA-------NNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQH-----RL--RSSLK  237 (534)
T ss_dssp             ECCCHHHHHHTT-------TSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGG-----GG--CCCCC
T ss_pred             CCCHHHHHHHHh-------cCcccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHhhH-----hc--ccccC
Confidence            999999988754       2478999999999999994 458889999999999999999887542     22  35789


Q ss_pred             ccccccchhhHHHHHHHHHhHHHHHHHhhhccccccccccCccchhHHhhhCCHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 047254          458 MPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTG  537 (836)
Q Consensus       458 ~~~~TRW~S~~~~L~rll~~k~~L~~~~~s~e~~~s~~~k~~~g~~v~~~il~~~fW~~l~~i~~il~Pl~~~l~~l~~d  537 (836)
                      .+++|||+|+|.||+++++++.+|..++.+.++.               ..++..+|..+..++.+|+||..+++.++++
T Consensus       238 ~~~~tRW~S~~~~L~~~l~~~~~i~~~~~~~~~~---------------~~~~~~dw~~~~~l~~iL~pf~~~t~~l~~~  302 (534)
T 2bw3_A          238 SECPTRWNSTYTMLRSILDNWESVIQILSEAGET---------------QRIVHINKSIIQTMVNILDGFERIFKELQTC  302 (534)
T ss_dssp             CSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTCG---------------GGTTTCCHHHHHHHHHHHHTTHHHHHHHTCS
T ss_pred             CCCCCCcHhHHHHHHHHHHHHHHHHHHHHhcccc---------------cCCchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998765431               1244567999999999999999999999998


Q ss_pred             CCCchhcHHHHHHHHHHHHHHHhCCC---cccccchHHHHHHHhhhccCCcchhheeecCccCCCC-CCCCCchHHHH--
Q 047254          538 QSLSMPYVYNDMYRAKLAIQSFHGDD---VRKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYR-PHFVAYPEVVR--  611 (836)
Q Consensus       538 ~~ps~~~iy~~~~~~k~~I~~~~~~~---~~~~~~~~~~id~rw~~~l~~pl~~aA~~LnPr~~y~-~~~~~~~ei~~--  611 (836)
                      .+|++++||+.|..+++.++....+.   ...+..+++.+++||+... +|+|++|++|||+|+|. +.+..  ++..  
T Consensus       303 ~~pt~~~v~~~~~~l~~~l~~~~~~~~~~~~l~~~m~~~l~ky~~~~~-~~~~~~A~~LdPr~~~l~p~~k~--~~~~~~  379 (534)
T 2bw3_A          303 SSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENL-SIWHYTAFFFYPPALHMQQEKVA--QIKEFC  379 (534)
T ss_dssp             SSCCGGGHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHTTGGGC-CHHHHHHHHTSGGGTTSCCSCHH--HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhc-chhhheeeEecccccccCHHHHH--HHHHHH
Confidence            89999999999999887664221111   1234577888999998875 68999999999999763 32211  1110  


Q ss_pred             -------HHHHHHH---HhcCC----hHH----H-----------------------------HHHHHhhhhhhhhhhcc
Q 047254          612 -------GLNECIV---RLEPD----KVR----R-----------------------------IYAMSQISDYTTAKADF  644 (836)
Q Consensus       612 -------~l~~~i~---~l~~~----~~~----~-----------------------------~~i~~el~~y~~~~~~f  644 (836)
                             .+.+.+.   ++.+.    ...    .                             ..+..||..|....   
T Consensus       380 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~yl~~~---  456 (534)
T 2bw3_A          380 LSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEI---  456 (534)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCSSSCCC----------------CCCHHHHHCHHHHHHHHHSCCCCHHHHHHHHHTCC---
T ss_pred             hhhhcchHHHHHHHHHHHhhhhhccCCCCcccccccccccccCccchHHHHHHHhhcCCCCCCCChHHHHHHHHcCC---
Confidence                   0111111   11110    000    0                             00123333332210   


Q ss_pred             CcHHHHhhhccccccchhccccCCchhHHHHHHHHhcccccCcccCCCcchhhhhhhcccccchHHhhhhHHHHHHhHHH
Q 047254          645 GTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLRL  724 (836)
Q Consensus       645 ~~~~ai~~~~~~~Pl~WW~~~~~~~P~L~klA~~iLsip~SSa~~ER~FS~~~~I~tk~RnrL~~e~l~~Lvfv~~N~~L  724 (836)
                           .......+|+.||+.++..||.|++||++||++||||++|||+||+++.+++++||||+++++++|+|+++|+++
T Consensus       457 -----~~~~~~~~~l~wW~~~~~~~p~L~~~a~~~l~~p~ss~~~er~fs~~~~~~~~~r~~l~~~~~~~l~~~~~~~~~  531 (534)
T 2bw3_A          457 -----VILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYKN  531 (534)
T ss_dssp             -----CCCCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             -----CCcCCCCChHHHHHhCCccCChHHHHHHHHhcCCcccccccccccccccccCcccccCCHHHHHHHHHHHHHHHH
Confidence                 001235789999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             H
Q 047254          725 R  725 (836)
Q Consensus       725 ~  725 (836)
                      -
T Consensus       532 ~  532 (534)
T 2bw3_A          532 F  532 (534)
T ss_dssp             H
T ss_pred             h
Confidence            4
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 836
d2bw3a2447 c.55.3.12 (A:163-609) Transposase Hermes, catalyti 4e-34
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score =  134 bits (337), Expect = 4e-34
 Identities = 59/468 (12%), Positives = 145/468 (30%), Gaps = 75/468 (16%)

Query: 304 EHRASWAVTGCSVMADSWTDSESR----TLINLFVS-SPHGLYFLSSVDATDIVEDASNL 358
           E +++    G S   D WTD+  +     +   +   +      L           A N+
Sbjct: 3   EIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENI 62

Query: 359 FKLLDKVVEEMGEENVVQVITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKM-LDGFL 417
           +K L  +  +   E++  +           G  + +   N     C+++ +  +  + F 
Sbjct: 63  YKKLKAIFSQFNVEDLSSIKFVT-----DRGANVVKSLANNIRINCSSHLLSNVLENSFE 117

Query: 418 NLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQELLMPSVTRFASSFTTLQNLLDH 477
               +   +   + I K+         L          L     TR+ S++T L+++LD+
Sbjct: 118 ETPELNMPILACKNIVKYFKKANLQHRLRSS-------LKSECPTRWNSTYTMLRSILDN 170

Query: 478 RIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVDTG 537
              + ++      T                 +       +  +V  ++   ++ +++ T 
Sbjct: 171 WESVIQILSEAGETQR---------------IVHINKSIIQTMVNILDGFERIFKELQTC 215

Query: 538 QSLSMPYVYNDMYRAKLAIQSFHGDDV---RKYGPFWNVIDNHWDLLGHHPLYVAAYFLN 594
            S S+ +V   + + K       GD     +        +   W+       Y A +F  
Sbjct: 216 SSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHYTAFFFYP 275

Query: 595 PSYRYRPHFVAYPEVVRGLNECIVRL---------------------------------E 621
           P+   +   VA  +         + L                                 +
Sbjct: 276 PALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKD 335

Query: 622 PDKVRRIYAMSQISDYTTAKADFGTEL------AISTRTELEPAAWWQQHGISSLQLQQI 675
                  +     ++          E        +    + +   WW  +     +L ++
Sbjct: 336 ISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPKLSKL 395

Query: 676 AVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLR 723
           A+ +LS   SS   E  +S+   +  ++ +R  Q+ ++ L++++   +
Sbjct: 396 ALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYK 443

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query836
d2bw3a2447 Transposase Hermes, catalytic domain {House fly (M 100.0
d2bw3a184 Transposase Hermes, dimerisation domain {House fly 97.01
d2ct5a160 Zinc finger BED domain-containing protein 1 {Human 95.69
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=100.00  E-value=1.6e-44  Score=407.10  Aligned_cols=381  Identities=14%  Similarity=0.196  Sum_probs=286.4

Q ss_pred             HHHhhhhccceEEEecccccCC-CCeEEEEEeecCCc----ceEEEeeeCCCCCcchHHHHHHHHHHHHHhcC--ccEEE
Q 047254          304 EHRASWAVTGCSVMADSWTDSE-SRTLINLFVSSPHG----LYFLSSVDATDIVEDASNLFKLLDKVVEEMGE--ENVVQ  376 (836)
Q Consensus       304 ~~~~~w~~~~~sI~~D~WTd~~-~~~~l~~~v~~~~g----~~fL~svd~s~~~htge~I~e~l~~viee~g~--~nVv~  376 (836)
                      ++++.|...++||++|+||+.. +++||+++||+.+.    ..+|+........|||++|++.|.+++++||+  .++++
T Consensus         3 ~~k~~~~~~~~s~~~D~Wts~~~~~~~l~v~~~yi~~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~   82 (447)
T d2bw3a2           3 EIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIK   82 (447)
T ss_dssp             HHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCE
T ss_pred             hHHHHHHcCCEEEEEEeecCCCCCeEEEEEEEEEEECCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEE
Confidence            4556667889999999999864 56999999998642    25677766666679999999999999999997  58999


Q ss_pred             EEEeCCcchhhhhhHHHHhcCCccccCchHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccCcc
Q 047254          377 VITQNTPSYKSAGKMLEEKRKNLFWTPCATYCIDKMLDGFL-NLKSVWKCMEMAQKITKFIYNHIRLLNLMKKEFTQGQE  455 (836)
Q Consensus       377 vvTDnasn~~~a~~lL~~k~p~i~~~~C~aH~LnLvl~di~-k~~~v~~~i~k~~~Iv~fi~~s~~~l~~~r~k~~~~~~  455 (836)
                      ++||||+||.++       ++.+.++||++|+|||+++++. +++.+.+++.++++++.||.+++.+..       ....
T Consensus        83 ~~~D~a~n~~~~-------~~~~~~i~C~aH~Lnl~v~d~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-------~~~~  148 (447)
T d2bw3a2          83 FVTDRGANVVKS-------LANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHR-------LRSS  148 (447)
T ss_dssp             EEECCCHHHHHH-------TTTSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGG-------GCCC
T ss_pred             EEcCCcHhhHHH-------hhccccccchhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHH-------Hhcc
Confidence            999999999875       4567889999999999999965 588999999999999999988765432       1346


Q ss_pred             ccccccccchhhHHHHHHHHHhHHHHHHHhhhccccccccccCccchhHHhhhCCHHHHHHHHHHHHhHHHHHHHHHHHh
Q 047254          456 LLMPSVTRFASSFTTLQNLLDHRIDLRRMFQSEIWTSSWFSKSDKGKEVENIVLNAKFWKKVLYVVRSVNPIMKVLQKVD  535 (836)
Q Consensus       456 Li~~~~TRW~S~~~~L~rll~~k~~L~~~~~s~e~~~s~~~k~~~g~~v~~~il~~~fW~~l~~i~~il~Pl~~~l~~l~  535 (836)
                      |..+++|||+|+|.||+++++++.++..++......               ..+...+|..++.++++++||..++..++
T Consensus       149 l~~~~~trW~s~~~~l~~~~~~~~~i~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  213 (447)
T d2bw3a2         149 LKSECPTRWNSTYTMLRSILDNWESVIQILSEAGET---------------QRIVHINKSIIQTMVNILDGFERIFKELQ  213 (447)
T ss_dssp             CCCSSCGGGCHHHHHHHHHHHTHHHHHHHHHHTTCG---------------GGTTTCCHHHHHHHHHHHHTTHHHHHHHT
T ss_pred             cCCCCccchhhHHHHHHHHHHHHHHHHHHHHhcccc---------------ccCChHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            788999999999999999999999999887643211               13556789999999999999999999999


Q ss_pred             cCCCCchhcHHHHHHHHHHHHHHHhCCCc---ccccchHHHHHHHhhhccCCcchhheeecCccCCCCCCCCCchHHHHH
Q 047254          536 TGQSLSMPYVYNDMYRAKLAIQSFHGDDV---RKYGPFWNVIDNHWDLLGHHPLYVAAYFLNPSYRYRPHFVAYPEVVRG  612 (836)
Q Consensus       536 ~d~~ps~~~iy~~~~~~k~~I~~~~~~~~---~~~~~~~~~id~rw~~~l~~pl~~aA~~LnPr~~y~~~~~~~~ei~~~  612 (836)
                      ++..|+++.+++.+..+...+.....+..   .....++..++++|+... ...+.+|.+|+|++++.. +.........
T Consensus       214 ~~~~~t~~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~l~p~~~~~~-~~~~~~~~~~  291 (447)
T d2bw3a2         214 TCSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENL-SIWHYTAFFFYPPALHMQ-QEKVAQIKEF  291 (447)
T ss_dssp             CSSSCCGGGHHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHTTGGGC-CHHHHHHHHTSGGGTTSC-CSCHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCcccchh-hhHHHHHHHH
Confidence            99899999999999887665543222111   123455677788888764 445667788899886532 2211111111


Q ss_pred             HHHHHHH---------hcC-------ChH----HHHH-----------------------------HHHhhhhhhhhhhc
Q 047254          613 LNECIVR---------LEP-------DKV----RRIY-----------------------------AMSQISDYTTAKAD  643 (836)
Q Consensus       613 l~~~i~~---------l~~-------~~~----~~~~-----------------------------i~~el~~y~~~~~~  643 (836)
                      ....+..         ...       ...    ....                             ...|+..|...   
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~yl~~---  368 (447)
T d2bw3a2         292 CLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCPSDEFEFYRKE---  368 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCSSSCCC----------------CCCHHHHHCHHHHHHHHHSCCCCHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccchhHHhhhhcccccccccHHHHHHHhcC---
Confidence            1111110         000       000    0000                             00111111100   


Q ss_pred             cCcHHHHhhhccccccchhccccCCchhHHHHHHHHhcccccCcccCCCcchhhhhhhcccccchHHhhhhHHHHHHhHH
Q 047254          644 FGTELAISTRTELEPAAWWQQHGISSLQLQQIAVRILSQTCSSIGCEHKWSIYDQVHGQRHSRAAQKRINDLIYVHYNLR  723 (836)
Q Consensus       644 f~~~~ai~~~~~~~Pl~WW~~~~~~~P~L~klA~~iLsip~SSa~~ER~FS~~~~I~tk~RnrL~~e~l~~Lvfv~~N~~  723 (836)
                           ......+.+|++||..+...||.|++||+++|++|+|||.|||+||+.++|+|++||||++++++.|+|++.|.|
T Consensus       369 -----~~~~~~~~~~l~~W~~~~~~yP~L~~lA~~~Lsip~tsa~~ER~FS~~~~i~t~~R~~L~~e~le~L~~l~~~~k  443 (447)
T d2bw3a2         369 -----IVILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFYK  443 (447)
T ss_dssp             -----CCCCCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHHHHHHHHHHH
T ss_pred             -----ccccCCCCCHHHHHHHCCcccHHHHHHHHHHhCCCCcccHHHHHHhccccccCcccCCCCHHHHHHHHHHHHHhh
Confidence                 000123578999999999999999999999999999999999999999999999999999999999999999986
>d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]} Back     information, alignment and structure
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure