Citrus Sinensis ID: 047259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAPKATI
Secondary Structure (PSIPRED)
ccccEEEcccccEEEEccccccccccHHHHHHccccccEEEEEEcccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEccccccccEEEEEccccccccEEEcccccEEEEEEccccHHHHHHccccHHHHHHHHcHHHHHHHccccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEccccEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccEEEEEcccccccHHHHHHHHHHcccccEEEEEcccccEEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccHHHHHHccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHccHHHHHcccccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEcccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
ftndvieasdgslyftvsskkytpaeyykdlvegkphgqllkydpeleettvlhegfyfangvalskdeNFVVVCESWKFRCRrywlkgprqgrLESFIehlpggpdninlapdgSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIplgndagarIVKVDThgkiimdfndpnatyISFVTSAVEFEDNLYMASIQSkfvgklplntpeaelapkati
Flexible Loop (DISEMBL)
ftndvieasdgslyftvsskkyTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANgvalskdenFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSkfvgklplntpeaelapkati
Low Complexity Region (SEG)
FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAPKATI
Disordered region (IsUnstruct)
***********SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKL***************
Disordered Region (DISOPRED)
FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP**********
Disordered Region (DISEMBL)
FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAPKATI
Disordered Region (DISPRO)
*TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAPKATI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.92	0.498	0.337	5e-26
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.911	0.492	0.312	8e-25
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.924	0.553	0.318	1e-24
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.906	0.495	0.309	2e-24
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.924	0.501	0.309	8e-24
Q803F5	415	Adipocyte plasma membrane	yes	no	0.911	0.493	0.299	2e-23
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.911	0.492	0.294	6e-22
P94111	335	Strictosidine synthase 1	no	no	0.786	0.528	0.293	2e-18
P92976	329	Strictosidine synthase 3	no	no	0.786	0.537	0.283	1e-15
P68175	344	Strictosidine synthase OS	N/A	no	0.506	0.331	0.336	4e-12

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 15/222 (6%)

Query: 1   FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS K+   ++   ++EG   G+LL+YD   +E  VL  G  F
Sbjct: 198 FLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRF 257

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
            NGV LS  E+FV+V E+   R RRY++ G  +G  + F+E++PG PDNI L+  G +WV
Sbjct: 258 PNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWV 317

Query: 120 AL-IKMNQTGVRAIQSCPDK-------WKLLQAYPELINLLIPLGNDAGARIVKVDTHGK 171
           A+ +     G   +    +K       +KLL    E +  L+P      + +V++   G 
Sbjct: 318 AMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQ--ETVTKLLP----KRSLVVELSETGS 371

Query: 172 IIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213
               F+DP    + +V+ A E    LY+ S +S F+ +L L 
Sbjct: 372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413

Gallus gallus (taxid: 9031)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 19/224 (8%)

Query: 1   FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS ++   +Y   ++E    G++L+YD E +E TVL E   F
Sbjct: 199 FVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRF 258

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
           ANG+ L  DE  V+V E+   R RR  + G  +G +++F+++LPG PDNI  +  G +WV
Sbjct: 259 ANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWV 318

Query: 120 ALIKMNQTGVRAIQSCP--DKWKLLQAYPELINLLIPL-GNDAGAR-------IVKVDTH 169
           A+         A++  P       L   P +  L+  L   D   +       ++++   
Sbjct: 319 AM--------SAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQES 370

Query: 170 GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213
           G  +  F+DP+    ++V+ A E + +LY+ S +S ++ KL L+
Sbjct: 371 GACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414

Salmo salar (taxid: 8030)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 15/223 (6%)

Query: 1   FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS K+   +Y   ++EG   G+LL+YD   +E  VL +   F
Sbjct: 159 FVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQF 218

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
            NGV LS +E+FV+V E+   R RR ++ G  +G  + F+E++PG PDNI  +  G +WV
Sbjct: 219 PNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 278

Query: 120 ALIKMNQT-GVRAIQSCPDK-------WKLLQAYPELINLLIPLGNDAGARIVKVDTHGK 171
           A   +    G   +    DK       +KL     E +   +P      + +++V   G 
Sbjct: 279 AAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQ--ETVMKFVP----RYSLVLEVSDSGA 332

Query: 172 IIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
                +DP+   +++V+ A E +  LY+ S +S F+ +L L +
Sbjct: 333 FRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 375

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 19/223 (8%)

Query: 1   FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS K+   +Y   L+EG   G+LL+YD + +E  VL +   F
Sbjct: 198 FLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRF 257

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
            NGV LS  E+FV+V E    R RR+++ G  +G  + F+E+LPG PDNI  +  G +WV
Sbjct: 258 PNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWV 317

Query: 120 ALIKMNQTGVRAIQSCP--DKWKLLQAYPELINLLIPLGNDAG--------ARIVKVDTH 169
           ++         AI++ P       L   P L  ++  L +           + ++++   
Sbjct: 318 SMA--------AIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDS 369

Query: 170 GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
           G  +   +DP    +++V+ A E   +LY+ S ++ ++ +L L
Sbjct: 370 GTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 15/223 (6%)

Query: 1   FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS K+   +Y   ++E    G+LL+YD   +E  VL +   F
Sbjct: 198 FVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQF 257

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
            NGV LS +E+FV+V E+   R RR ++ G  +G  + F+E++PG PDNI  +  G +WV
Sbjct: 258 PNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 317

Query: 120 ALIKMNQT-GVRAIQSCPDK-------WKLLQAYPELINLLIPLGNDAGARIVKVDTHGK 171
           A   +    G   +    DK       +K+     E +   +P      + +++V   G 
Sbjct: 318 AAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQ--ETVMKFVP----RYSLVLEVSDSGA 371

Query: 172 IIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
                +DP+   +++V+ A E +  LY+ S +S F+ +L L +
Sbjct: 372 FRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 414

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 19/224 (8%)

Query: 1   FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS ++   ++   ++E    G++L+YD E +E  V+ E   F
Sbjct: 198 FVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRF 257

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
            NG+ L  DE  V+V E+   R +R  + G  +G +++FIE+LPG PDNI  +  G +WV
Sbjct: 258 PNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWV 317

Query: 120 ALIKMNQTGVRAIQSCP--DKWKLLQAYPELINLLIPLGNDAG--------ARIVKVDTH 169
           A+         A++  P       L   P L  L+  L +           + +V++ + 
Sbjct: 318 AM--------SAVRPNPGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSD 369

Query: 170 GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213
           G  +  F+DP     ++ + A E+  +LY+ S +S ++ KL L+
Sbjct: 370 GTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413

Danio rerio (taxid: 7955)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 19/224 (8%)

Query: 1   FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           F ND+    DG  +YFT SS K+   +Y   ++EG   G+LL+YD    E  VL +   F
Sbjct: 199 FVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRF 258

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
            NGV LS  E+FV+V E+   R RR ++ G  +G  + F+E++PG PDNI  +  G +WV
Sbjct: 259 PNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWV 318

Query: 120 ALIKMNQTGVRAIQSCP--DKWKLLQAYPELINLLIPLGNDAG--------ARIVKVDTH 169
                   G+  I+  P       L   P +  ++  L +           + ++++   
Sbjct: 319 --------GMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDS 370

Query: 170 GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213
           G      +DP+    ++++   E + +LY+ S +S F+ +L L 
Sbjct: 371 GAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQ 414

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 31/208 (14%)

Query: 6   IEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVAL 65
           ++ + G +YFT  S +++P +    L      G+L KYDP  +  TVL EG   + G A+
Sbjct: 150 VDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAV 209

Query: 66  SKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI-NLAPDGSFWVALIKM 124
           S D +FV+V +  K   +RYW+KGP+ G  E F   +   PDNI  +   G+FWVA + +
Sbjct: 210 SSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVS-NPDNIKRIGSTGNFWVASV-V 267

Query: 125 NQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYI 184
           N+                        +++P    A    VKV+++G+++      +    
Sbjct: 268 NK------------------------IIVPTNPSA----VKVNSNGEVLQTIPLKDKFGD 299

Query: 185 SFVTSAVEFEDNLYMASIQSKFVGKLPL 212
           + ++   EFE NLY+ ++   F G L L
Sbjct: 300 TLLSEVNEFEGNLYIGTLTGPFAGILKL 327

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 31/208 (14%)

Query: 6   IEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVAL 65
           ++ + G +YFT  S  + P +  K +      G+  KYDP  +  TVL EG   + G A+
Sbjct: 152 VDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAV 211

Query: 66  SKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI-NLAPDGSFWVALIKM 124
           S D +FV+V +  K   +RYW+KG + G  E F   +   PDNI  +   G+FWVA +  
Sbjct: 212 SSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVS-NPDNIKRIGSTGNFWVASVVN 270

Query: 125 NQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYI 184
           + TG                         P    A    VKV + GK++      +    
Sbjct: 271 SATG-------------------------PTNPSA----VKVSSAGKVLQTIPLKDKFGD 301

Query: 185 SFVTSAVEFEDNLYMASIQSKFVGKLPL 212
           + V+   E++  LY+ ++   F G L L
Sbjct: 302 TLVSEVNEYKGQLYIGALFGPFAGILKL 329

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 5   VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
            ++   G +YFT  S  Y      + +      G+L+KYDP  +ETT+L +  +   G  
Sbjct: 154 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 213

Query: 65  LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           +S D +FV+V E    +  +YWL+GP++G  E  ++ +P  P NI    DG FWV+
Sbjct: 214 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 267

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
297738547	461	unnamed protein product [Vitis vinifera]	0.942	0.459	0.551	4e-67
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.942	0.326	0.551	4e-67
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.933	0.570	0.566	5e-66
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.924	0.569	0.566	5e-65
297738546	382	unnamed protein product [Vitis vinifera]	0.924	0.544	0.566	5e-65
357450079	372	Adipocyte plasma membrane-associated pro	0.942	0.569	0.554	2e-63
388499476	372	unknown [Medicago truncatula]	0.942	0.569	0.554	2e-63
118489288	275	unknown [Populus trichocarpa x Populus d	0.937	0.767	0.516	9e-62
357450077	352	Adipocyte plasma membrane-associated pro	0.933	0.596	0.514	1e-59
388492006	352	unknown [Medicago truncatula]	0.933	0.596	0.514	2e-59

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 165/214 (77%), Gaps = 2/214 (0%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +DVIEASDGSLYF+V+S K+   ++Y D++E KPHGQLLKYDP L ET++L +   FA
Sbjct: 249 FADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFA 308

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALS+DE+F+VVCE+WKFRC +YWLKG R+GR E F+++LPGGPDNINLAPDGSFW+A
Sbjct: 309 NGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIA 368

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           L+++++ G+  + +      L+  +P+L+ L+   G    A +VKV   GK++  FNDPN
Sbjct: 369 LLELSREGMGFVHTSKASKHLVATFPKLLGLV--QGMQKKAMVVKVGADGKMMKRFNDPN 426

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
            + +SFVT+A+EFE++LY+ S+ + F+GKLPL T
Sbjct: 427 GSVMSFVTNALEFEEHLYLGSLNTNFIGKLPLTT 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 118/214 (55%), Positives = 165/214 (77%), Gaps = 2/214 (0%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +DVIEASDGSLYF+V+S K+   ++Y D++E KPHGQLLKYDP L ET++L +   FA
Sbjct: 438 FADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFA 497

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALS+DE+F+VVCE+WKFRC +YWLKG R+GR E F+++LPGGPDNINLAPDGSFW+A
Sbjct: 498 NGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIA 557

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           L+++++ G+  + +      L+  +P+L+ L+   G    A +VKV   GK++  FNDPN
Sbjct: 558 LLELSREGMGFVHTSKASKHLVATFPKLLGLV--QGMQKKAMVVKVGADGKMMKRFNDPN 615

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
            + +SFVT+A+EFE++LY+ S+ + F+GKLPL T
Sbjct: 616 GSVMSFVTNALEFEEHLYLGSLNTNFIGKLPLTT 649

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/212 (56%), Positives = 158/212 (74%), Gaps = 2/212 (0%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +DVIEASDGSLYF+V+S K+    +Y DL+E KPHGQLLKYDP L ET+++ +   F 
Sbjct: 156 FADDVIEASDGSLYFSVASSKFGLHHWYLDLLEAKPHGQLLKYDPLLNETSIILDNLAFP 215

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALS+DE+F+VVCE+WKFRC +YWLKG R+GR E+FI++LP GPDNINLAPDGSFW+A
Sbjct: 216 NGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTETFIDNLPNGPDNINLAPDGSFWIA 275

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           LIK+   G   + +       L  +P+L  L+   G++  A +VKV   GKI+  F+DPN
Sbjct: 276 LIKLASDGFEFVHASKALKHFLATFPKLFQLVN--GSNEKATVVKVAADGKIVDKFDDPN 333

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              +SFVTSA+EFED+LY+ S+ + F+GKLPL
Sbjct: 334 GKVMSFVTSALEFEDHLYLGSLNTNFIGKLPL 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/212 (56%), Positives = 158/212 (74%), Gaps = 4/212 (1%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F NDVIEA+DGS+YF+V+S ++    +Y D++E KPHGQLLKYDP L ET++L +   FA
Sbjct: 155 FANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFA 212

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALS+DE+F+VVCE+WKFRC +YWL+G R+GR E+FI++LPGGPDN+NLAPDGSFW+A
Sbjct: 213 NGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGPDNVNLAPDGSFWIA 272

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           LIK+   G   + +      LL  +P+L  L+   G+   A +VKV   GKII  F+DPN
Sbjct: 273 LIKVTSDGFEFVHTSKALKHLLATFPKLFQLV--KGSHKKASVVKVAADGKIIDKFDDPN 330

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              ISFVTSA+EFED LY+ S+ + F+G LPL
Sbjct: 331 GKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/212 (56%), Positives = 158/212 (74%), Gaps = 4/212 (1%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F NDVIEA+DGS+YF+V+S ++    +Y D++E KPHGQLLKYDP L ET++L +   FA
Sbjct: 172 FANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFA 229

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALS+DE+F+VVCE+WKFRC +YWL+G R+GR E+FI++LPGGPDN+NLAPDGSFW+A
Sbjct: 230 NGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGPDNVNLAPDGSFWIA 289

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           LIK+   G   + +      LL  +P+L  L+   G+   A +VKV   GKII  F+DPN
Sbjct: 290 LIKVTSDGFEFVHTSKALKHLLATFPKLFQLV--KGSHKKASVVKVAADGKIIDKFDDPN 347

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              ISFVTSA+EFED LY+ S+ + F+G LPL
Sbjct: 348 GKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 157/220 (71%), Gaps = 8/220 (3%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +DVIEASDG++YF+V S K+   ++Y DL+E +PHGQLLKY+P L ET ++ +   FA
Sbjct: 159 FADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFA 218

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALSKDE++VVVCE+WKFRC R+WLKG   G+ + FIE+LPGGPDNINLAPDGSFW+A
Sbjct: 219 NGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIENLPGGPDNINLAPDGSFWIA 278

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA--GARIVKVDTHGKIIMDFND 178
           L+++    +  + +      LL ++P LINL+    N A   A ++ V T G II  F D
Sbjct: 279 LVQLTSKRLGFVHTSIVCKHLLASFPRLINLI----NSATKSAMVLNVGTEGNIIRKFGD 334

Query: 179 PNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAE 218
                ISFVTSAVEFED+LY+ S+ S FVGKLPL  P AE
Sbjct: 335 NEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL--PSAE 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 157/220 (71%), Gaps = 8/220 (3%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +DVIEASDG++YF+V S K+   ++Y DL+E +PHGQLLKY+P L ET ++ +   FA
Sbjct: 159 FADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFA 218

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALSKDE++VVVCE+WKFRC R+WLKG   G+ + FIE+LPGGPDNINLAPDGSFW+A
Sbjct: 219 NGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIENLPGGPDNINLAPDGSFWIA 278

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA--GARIVKVDTHGKIIMDFND 178
           L+++    +  + +      LL ++P LINL+    N A   A ++ V T G II  F D
Sbjct: 279 LVQLTSKRLGFVHTSIVCKHLLASFPRLINLI----NSATKSAMVLNVGTEGNIIRKFGD 334

Query: 179 PNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAE 218
                ISFVTSAVEFED+LY+ S+ S FVGKLPL  P AE
Sbjct: 335 NEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL--PSAE 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489288|gb|ABK96449.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 110/213 (51%), Positives = 159/213 (74%), Gaps = 2/213 (0%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F ++VIE+SDGSLYF+V+S K+   ++Y D++E KPHGQLLKYDP L ET++L +G  F 
Sbjct: 61  FADEVIESSDGSLYFSVASTKFGFHDWYLDVLEAKPHGQLLKYDPSLYETSILLDGLCFP 120

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALS++E+++V CE+WK+RC++YWLKG  +G+ E FI++LPGGPDNI LAPDGSFW+A
Sbjct: 121 NGVALSREEDYLVFCETWKYRCQKYWLKGTDKGKTEIFIDNLPGGPDNIYLAPDGSFWIA 180

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           ++++   G+  +        L+ ++P+L+NL+I  G    A +V V   GKI   F+DP+
Sbjct: 181 VLQVASKGLEFVHRSKPSKHLVASFPKLVNLVI--GVKRKATVVNVAADGKITRKFDDPD 238

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN 213
              +SFVT+A EFED+LY+ S+ + F+GKLPLN
Sbjct: 239 GKVMSFVTTAFEFEDHLYLGSLNTNFIGKLPLN 271

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 151/212 (71%), Gaps = 2/212 (0%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +D+IEASDG++YF+V S K+    +Y D++E +PHGQLL+Y+P   ET ++ +   FA
Sbjct: 140 FADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFA 199

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALSKDE+++VVCE+WKFRC ++WLKG  +G+ E FIE+LP GPDNINLAPDGSFW+A
Sbjct: 200 NGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPDNINLAPDGSFWIA 259

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           LI++    +  + +      L+  +P L+N++  +     A +VKV T G II  F D +
Sbjct: 260 LIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSV--TKSAMVVKVTTEGNIIKKFGDND 317

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              I+FVTSAVEFEDNLY+ S+ + FVGK PL
Sbjct: 318 GKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 151/212 (71%), Gaps = 2/212 (0%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F +D+IEASDG++YF+V S K+    +Y D++E +PHGQLL+Y+P   ET ++ +   FA
Sbjct: 140 FADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFA 199

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NGVALSKDE+++VVCE+WKFRC ++WLKG  +G+ E FIE+LP GPDNINLAPDGSFW+A
Sbjct: 200 NGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPDNINLAPDGSFWIA 259

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
           LI++    +  + +      L+  +P L+N++  +     A +VKV T G II  F D +
Sbjct: 260 LIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSV--TKSAMVVKVTTEGNIIKKFGDND 317

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              I+FVTSAVEFEDNLY+ S+ + FVGK PL
Sbjct: 318 GKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.862	0.522	0.356	6.4e-28
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.875	0.532	0.342	8.2e-28
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.866	0.525	0.330	1.7e-27
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.915	0.496	0.343	1.2e-26
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.893	0.541	0.330	6.6e-26
UNIPROTKB|G1K318	414	C3H20orf3 "Uncharacterized pro	0.911	0.495	0.343	1.4e-25
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.915	0.528	0.325	3.6e-25
RGD|1308874	376	Apmap "adipocyte plasma membra	0.92	0.550	0.325	5.9e-25
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.92	0.536	0.325	5.9e-25
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.906	0.545	0.336	5.9e-25

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 76/213 (35%), Positives = 117/213 (54%)

Query:     5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
             V  A +G LYFT  S KY   ++  D++EGKPHG+L+ +DP  + T VL    YFANGV+
Sbjct:   163 VTVADNGVLYFTDGSYKYNLHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVS 222

Query:    65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKM 124
             LS D+  +V CE+   RC +Y++ G   GR+E FI+ LPG PDNI    DG +W+A+   
Sbjct:   223 LSPDQTHLVFCETPIRRCSKYYING---GRVELFIQGLPGYPDNIRYDGDGHYWIAM--- 276

Query:   125 NQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATY 183
               +GV  +      WKL   YP  +  +  +    G   + ++  G + +D + +P A Y
Sbjct:   277 -PSGVTTL------WKLSMKYP-FLRKITAMAAKYGYEPMFMENAGVLQVDLDGNPIAYY 328

Query:   184 ----ISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
                 +S +T+ V+  + LY  S+    + +L L
Sbjct:   329 HDQALSHITTGVKIGNYLYCGSLWHSHILRLDL 361

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 74/216 (34%), Positives = 115/216 (53%)

Query:     2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFAN 61
             T+ V  A +G LYFT +S KY   ++  D +EGKPHG+++ +DP    T VL +  YFAN
Sbjct:   160 TDAVTVADNGVLYFTDASSKYDFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFAN 219

Query:    62 GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVAL 121
             G+++S D+   V CE+   RC +Y++    + R+E FI+ LPG PDNI    DG +W+AL
Sbjct:   220 GISMSPDQTHFVFCETIMRRCSKYYIS---EERVEVFIQGLPGYPDNIRYDGDGHYWIAL 276

Query:   122 IKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPN 180
             I    T           WKL   Y   +  LI +    G  ++ +     + +D + +P 
Sbjct:   277 ISEVTTS----------WKLSMKYL-FLRKLIYMAAKYGVELLSIKNAAVLQVDLDGNPI 325

Query:   181 ATY----ISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
             A Y     S +TS V+  ++LY  S+   ++ +L L
Sbjct:   326 AMYHDHPFSHITSGVKIGNHLYFGSLLHSYITRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 71/215 (33%), Positives = 120/215 (55%)

Query:     4 DVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
             DV+  +D G LYFT +S KYT  +   D++EGKPHG+L+ +DP    T VL +  YFANG
Sbjct:   161 DVVAVADNGVLYFTDASYKYTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANG 220

Query:    63 VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALI 122
             V++S D+  ++ CE+   RC +Y++    + R+E FI+ LPG PDNI    DG +W+A++
Sbjct:   221 VSMSPDQTHLIFCETPMRRCSKYYIN---EERVEVFIQGLPGYPDNIRYDGDGHYWIAMV 277

Query:   123 KMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNA 181
                 +G   +      W+L   YP  +  +  +    G  ++ +   G + +D + +P A
Sbjct:   278 ----SGASTL------WRLSMKYP-FLRKITAIAAKYGVELMFMKNAGVLQVDLDGNPIA 326

Query:   182 TY----ISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              Y    +S +T+ ++  + LY  +I   ++ +L L
Sbjct:   327 YYHDQRLSHITTGIKIGNYLYCGNILHSYIIRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 76/221 (34%), Positives = 116/221 (52%)

Query:     1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
             F ND+    DG  +YFT SS K+   ++   ++EG   G+LL+YD   +E  VL  G  F
Sbjct:   198 FLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRF 257

Query:    60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
              NGV LS  E+FV+V E+   R RRY++ G  +G  + F+E++PG PDNI L+  G +WV
Sbjct:   258 PNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWV 317

Query:   120 AL-IKMNQTGVRAIQSCPDK-W------KLLQAYPELINLLIPLGNDAGARIVKVDTHGK 171
             A+ +     G   +    +K W      KLL    E +  L+P      + +V++   G 
Sbjct:   318 AMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQ--ETVTKLLP----KRSLVVELSETGS 371

Query:   172 IIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
                 F+DP    + +V+ A E    LY+ S +S F+ +L L
Sbjct:   372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 412

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 70/212 (33%), Positives = 114/212 (53%)

Query:     2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFAN 61
             T+ V  A +G LYFT +S KYT  +   D++EGKP G+LL +DP    T VL +  YFAN
Sbjct:   160 TDAVTVADNGVLYFTDASYKYTLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFAN 219

Query:    62 GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVAL 121
             G+ +S D+  ++ CE+   RC +Y++    + R+E F + LPG PDNI    DG +W+AL
Sbjct:   220 GITISPDQTHLIFCETPMKRCSKYYIS---EERVEVFTQSLPGYPDNIRYDGDGHYWIAL 276

Query:   122 IKMNQTGVRAIQSCPDKWKLLQAYPELINLL-IPLGNDAGARIVKVDTHGKIIMDFNDPN 180
                  +GV  + +   K+  L+    ++    + L     A +++VD  G  I  ++DP 
Sbjct:   277 ----PSGVTTLWNISLKYPFLRKLTAMVAKYGVDLMFMENAGVLQVDLDGNPIAYYHDPK 332

Query:   181 ATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
              ++I+      ++   LY  S+    + +L L
Sbjct:   333 LSHIATCDKIGKY---LYCGSLSQSHILRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

UNIPROTKB|G1K318 C3H20orf3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 76/221 (34%), Positives = 115/221 (52%)

Query:     1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
             F ND+    DG  +YFT SS K+   ++   ++EG   G LL+YD   +E  VL  G  F
Sbjct:   198 FLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDG-LLEYDTVTKEVKVLMVGLRF 256

Query:    60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
              NGV LS  E+FV+V E+   R RRY++ G  +G  + F+E++PG PDNI L+  G +WV
Sbjct:   257 PNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWV 316

Query:   120 AL-IKMNQTGVRAIQSCPDK-W------KLLQAYPELINLLIPLGNDAGARIVKVDTHGK 171
             A+ +     G   +    +K W      KLL    E +  L+P      + +V++   G 
Sbjct:   317 AMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQ--ETVTKLLP----KRSLVVELSETGS 370

Query:   172 IIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL 212
                 F+DP    + +V+ A E    LY+ S +S F+ +L L
Sbjct:   371 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 411

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 68/209 (32%), Positives = 102/209 (48%)

Query:     1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
             FTND+    +G++YFT SS  +   ++   +V G+  G++LKY+P+ +ETT L     F 
Sbjct:   177 FTNDLDIDDEGNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFP 236

Query:    61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
             NG++L KD +F + CE    R R+YWLKG + G  E  +  L G PDNI    DG FWVA
Sbjct:   237 NGLSLGKDGSFFIFCEGSIGRLRKYWLKGEKAGTSE-VVALLHGFPDNIRTNKDGDFWVA 295

Query:   121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINL--LIPLGNDAGARIVKVDTHGKIIMDFND 178
             +          +   P   K     P  +    L+ +G    A  VK    GK++    D
Sbjct:   296 VHCHRNIFTHLMAHYPRVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVLED 355

Query:   179 PNATYISFVTSAVEFEDNLYMASIQSKFV 207
                  +  V+   E +  L+M S+   F+
Sbjct:   356 SKGKVVKAVSEVEEKDGKLWMGSVLMSFI 384

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 73/224 (32%), Positives = 117/224 (52%)

Query:     1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
             F ND+    DG  +YFT SS K+   +Y   ++EG   G+LL+YD   +E  VL +   F
Sbjct:   159 FVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQF 218

Query:    60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
              NGV LS +E+FV+V E+   R RR ++ G  +G  + F+E++PG PDNI  +  G +WV
Sbjct:   219 PNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 278

Query:   120 AL--IKMNQTGVRAIQSCPDK-------WKLLQAYPELINLLIPLGNDAGARIVKVDTHG 170
             A   I+ N  G   +    DK       +KL     E +   +P      + +++V   G
Sbjct:   279 AAATIRANP-GFSMLDFLSDKPFIKRMIFKLFSQ--ETVMKFVP----RYSLVLEVSDSG 331

Query:   171 KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
                   +DP+   +++V+ A E +  LY+ S +S F+ +L L +
Sbjct:   332 AFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 375

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 73/224 (32%), Positives = 117/224 (52%)

Query:     1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
             F ND+    DG  +YFT SS K+   +Y   ++EG   G+LL+YD   +E  VL +   F
Sbjct:   169 FVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQF 228

Query:    60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
              NGV LS +E+FV+V E+   R RR ++ G  +G  + F+E++PG PDNI  +  G +WV
Sbjct:   229 PNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWV 288

Query:   120 AL--IKMNQTGVRAIQSCPDK-------WKLLQAYPELINLLIPLGNDAGARIVKVDTHG 170
             A   I+ N  G   +    DK       +KL     E +   +P      + +++V   G
Sbjct:   289 AAATIRANP-GFSMLDFLSDKPFIKRMIFKLFSQ--ETVMKFVP----RYSLVLEVSDSG 341

Query:   171 KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
                   +DP+   +++V+ A E +  LY+ S +S F+ +L L +
Sbjct:   342 AFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 385

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 72/214 (33%), Positives = 112/214 (52%)

Query:     1 FTNDV-IEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
             FTND+ I+  +  +YFT +S ++   ++   ++     G+ +KYD   ++ TVL +G  F
Sbjct:   161 FTNDLDIDEQEDVIYFTDTSARFQRRQFLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAF 220

Query:    60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
             ANGVALSKD +FV+V E+   +  R WL GP  G  + F E LPG PDNI    +G FWV
Sbjct:   221 ANGVALSKDRSFVLVVETTTCKILRLWLSGPNAGTHQVFAE-LPGFPDNIRRNSNGEFWV 279

Query:   120 ALIKMNQTGVRAIQSCPDKW--KL---LQAYPELINLLIPLGNDAGARIVKVDTHGKIIM 174
             AL   ++ G+ A  S    W   L   L   P+ ++ L   G    A  +K+   GK++ 
Sbjct:   280 AL--HSKKGLFAKLSLTQTWFRDLVLRLPISPQRLHSLFT-GGIPHATAIKLSESGKVLE 336

Query:   175 DFNDPNATYISFVTSAVEFEDNLYMASIQSKFVG 208
                D     + F++   E +  L++ S+   F+G
Sbjct:   337 VLEDKEGKTLRFISEVEEKDGKLWIGSVLVPFLG 370

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016421001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (368 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	2e-27
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	4e-19
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	3e-08
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-04

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 99.8 bits (249), Expect = 2e-27
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 4  DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGV 63
          DV     G LYFT SS +Y   +    ++EG   G+L+KYDP  + T VL +  YF NG+
Sbjct: 4  DVDP-ETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGI 62

Query: 64 ALSKDENFVVVCESWKFRCRRYWLKGP 90
          ALS D +FV+ CE+   R  +YW+KGP
Sbjct: 63 ALSPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 83.6 bits (207), Expect = 4e-19
 Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           ND +   DG ++F           +     E +P G L + DP+     +L +     NG
Sbjct: 114 NDGVVDPDGRIWFG------DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNG 167

Query: 63  VALSKDENFVVVCESWKFRCRRYWLKGPR----QGRLESFIEHLPGGPDNINLAPDGSFW 118
           +A S D   + V ++   R  RY L          R     +  PG PD + +  DG+ W
Sbjct: 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLW 227

Query: 119 VALIKMNQTGVRAIQSCPDKWKLLQAYP 146
           VA +      V      PD  KLL    
Sbjct: 228 VAAV-WGGGRVVRFN--PD-GKLLGEIK 251

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 14/123 (11%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           ND     DG  +F       T      D+  G   G L + DP+ +    + +G   +NG
Sbjct: 88  NDGKVDPDGRFWFG------TMGF---DIAPGGEPGALYRLDPDGK-VERVLDGITISNG 137

Query: 63  VALSKDENFVVVCESWKFRCRRY--WLKGPRQGRLESFI--EHLPGGPDNINLAPDGSFW 118
           +A S D   +   +S   R   +     G        F   +   G PD + +  +G+ W
Sbjct: 138 LAWSPDGKTLYFADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVW 197

Query: 119 VAL 121
           VA 
Sbjct: 198 VAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 36  PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRL 95
             G++ + DPE  +  V      F++G  +      ++ CE                G++
Sbjct: 45  LGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEHGVRLLDP-----DTGGKI 98

Query: 96  ESFIEHLPGGPDN----INLAPDGSFWV 119
               E   G P N      + PDG  W 
Sbjct: 99  TLLAEPEDGLPLNRPNDGVVDPDGRIWF 126

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.93
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.88
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.7
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.69
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.64
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.62
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.46
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.42
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.39
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	99.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
PRK11028	330	6-phosphogluconolactonase; Provisional	99.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.12
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.04
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.04
PRK11028	330	6-phosphogluconolactonase; Provisional	99.04
COG3391	381	Uncharacterized conserved protein [Function unknow	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.94
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.91
COG3391	381	Uncharacterized conserved protein [Function unknow	98.9
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.88
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.66
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.55
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.43
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.37
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.37
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.3
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.29
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.25
PRK05137	435	tolB translocation protein TolB; Provisional	98.24
PRK04792	448	tolB translocation protein TolB; Provisional	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
PRK05137	435	tolB translocation protein TolB; Provisional	98.21
PRK04792	448	tolB translocation protein TolB; Provisional	98.2
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.16
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.16
PRK03629	429	tolB translocation protein TolB; Provisional	98.09
PRK02889	427	tolB translocation protein TolB; Provisional	98.09
PRK04043	419	tolB translocation protein TolB; Provisional	98.06
PRK00178	430	tolB translocation protein TolB; Provisional	98.06
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.06
PRK03629	429	tolB translocation protein TolB; Provisional	98.05
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.04
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.01
PRK04922	433	tolB translocation protein TolB; Provisional	98.0
PRK04922	433	tolB translocation protein TolB; Provisional	98.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.97
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.94
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.88
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.88
PRK01742	429	tolB translocation protein TolB; Provisional	97.88
PRK00178	430	tolB translocation protein TolB; Provisional	97.88
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.83
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.83
PRK04043	419	tolB translocation protein TolB; Provisional	97.82
PRK02888	635	nitrous-oxide reductase; Validated	97.77
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.72
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.7
PRK01029	428	tolB translocation protein TolB; Provisional	97.68
PRK02889	427	tolB translocation protein TolB; Provisional	97.67
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.65
COG3211	616	PhoX Predicted phosphatase [General function predi	97.63
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.59
PRK01742	429	tolB translocation protein TolB; Provisional	97.54
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.53
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.44
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.41
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.39
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.38
PRK01029	428	tolB translocation protein TolB; Provisional	97.37
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.33
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.3
PRK02888	635	nitrous-oxide reductase; Validated	97.3
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.28
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.21
KOG0266	456	consensus WD40 repeat-containing protein [General	97.2
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.18
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.16
PTZ00421	493	coronin; Provisional	97.14
PTZ00420	568	coronin; Provisional	97.13
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.08
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.07
KOG0266	456	consensus WD40 repeat-containing protein [General	96.99
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.99
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.98
COG3211	616	PhoX Predicted phosphatase [General function predi	96.98
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	96.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.87
PTZ00420	568	coronin; Provisional	96.85
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.83
PTZ00421	493	coronin; Provisional	96.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.73
PRK13616	591	lipoprotein LpqB; Provisional	96.68
KOG2055	514	consensus WD40 repeat protein [General function pr	96.66
KOG0289	506	consensus mRNA splicing factor [General function p	96.59
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	96.58
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.52
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.46
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.43
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.42
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.37
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.37
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.23
KOG1273	405	consensus WD40 repeat protein [General function pr	96.2
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.2
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.19
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.15
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.95
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.93
KOG0315	311	consensus G-protein beta subunit-like protein (con	95.92
COG4946	668	Uncharacterized protein related to the periplasmic	95.9
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.63
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.62
PRK13616	591	lipoprotein LpqB; Provisional	95.57
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.4
KOG2139	445	consensus WD40 repeat protein [General function pr	95.31
KOG1215	877	consensus Low-density lipoprotein receptors contai	95.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.06
KOG0282	503	consensus mRNA splicing factor [Function unknown]	95.03
KOG0303	472	consensus Actin-binding protein Coronin, contains	95.03
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	95.03
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.99
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.73
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.7
KOG2055	514	consensus WD40 repeat protein [General function pr	94.51
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.47
KOG0294	362	consensus WD40 repeat-containing protein [Function	94.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.35
KOG2139	445	consensus WD40 repeat protein [General function pr	94.32
KOG0286	343	consensus G-protein beta subunit [General function	94.31
PRK10115	686	protease 2; Provisional	94.28
KOG0318	603	consensus WD40 repeat stress protein/actin interac	94.17
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.83
PHA02713	557	hypothetical protein; Provisional	93.66
KOG0640	430	consensus mRNA cleavage stimulating factor complex	93.63
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	93.61
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.41
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	93.25
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.21
COG4946	668	Uncharacterized protein related to the periplasmic	93.17
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	92.95
KOG0289	506	consensus mRNA splicing factor [General function p	92.87
PLN00181	793	protein SPA1-RELATED; Provisional	92.77
KOG1407	313	consensus WD40 repeat protein [Function unknown]	92.65
KOG0278	334	consensus Serine/threonine kinase receptor-associa	92.58
KOG0293	519	consensus WD40 repeat-containing protein [Function	92.56
KOG0282	503	consensus mRNA splicing factor [Function unknown]	92.4
KOG0639	705	consensus Transducin-like enhancer of split protei	92.25
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	92.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.11
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	92.09
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.04
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.85
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.84
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.26
KOG0293	519	consensus WD40 repeat-containing protein [Function	90.99
KOG1539	910	consensus WD repeat protein [General function pred	90.9
KOG0646	476	consensus WD40 repeat protein [General function pr	90.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.44
PLN00181	793	protein SPA1-RELATED; Provisional	90.36
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	90.29
PHA02713	557	hypothetical protein; Provisional	90.26
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	90.16
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	90.16
KOG1274	933	consensus WD40 repeat protein [General function pr	89.79
KOG1215	877	consensus Low-density lipoprotein receptors contai	89.76
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.74
KOG2048	691	consensus WD40 repeat protein [General function pr	89.49
KOG0275	508	consensus Conserved WD40 repeat-containing protein	88.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	88.77
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	88.71
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	88.6
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	88.58
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	88.49
KOG0772	641	consensus Uncharacterized conserved protein, conta	88.33
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.17
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	88.1
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	87.92
KOG1274	933	consensus WD40 repeat protein [General function pr	87.69
KOG0263	707	consensus Transcription initiation factor TFIID, s	87.55
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	87.55
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	87.37
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.29
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	86.86
COG3292	671	Predicted periplasmic ligand-binding sensor domain	86.65
KOG2106	626	consensus Uncharacterized conserved protein, conta	86.31
KOG0772	641	consensus Uncharacterized conserved protein, conta	85.75
KOG1273	405	consensus WD40 repeat protein [General function pr	85.71
KOG0640	430	consensus mRNA cleavage stimulating factor complex	85.33
PF07494	24	Reg_prop: Two component regulator propeller; Inter	84.82
KOG3881	412	consensus Uncharacterized conserved protein [Funct	84.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	84.77
KOG2096	420	consensus WD40 repeat protein [General function pr	84.51
PRK13684	334	Ycf48-like protein; Provisional	84.47
PHA02790	480	Kelch-like protein; Provisional	84.42
PHA03098	534	kelch-like protein; Provisional	84.26
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	83.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	83.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	82.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	82.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	81.52
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	81.48
KOG4328	498	consensus WD40 protein [Function unknown]	81.45
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.11
KOG0973	942	consensus Histone transcription regulator HIRA, WD	80.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	80.54

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=4.9e-37  Score=259.61  Aligned_cols=211  Identities=37%  Similarity=0.649  Sum_probs=194.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      |.||+.++++|.|||||++.+|++.+++.++++++++||+++||+.++..+++.+++.+|||+++|||++++.+|++...
T Consensus       162 f~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~  241 (376)
T KOG1520|consen  162 FLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTA  241 (376)
T ss_pred             ecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccc
Confidence            78999999999999999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh----ccCC
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL----IPLG  156 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~----~~~~  156 (225)
                      +|.||.+.+...++.++|++++||+||||..+++|++||+.+..++...+++..+|++|+++..+|..+..+    .+..
T Consensus       242 ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~  321 (376)
T KOG1520|consen  242 RIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGK  321 (376)
T ss_pred             eeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCC
Confidence            999999999888888999988999999999999999999999999999999999999999999987776543    2223


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      +  +..|.+.|.+|++++++++++|+.+..++.+.+++|+||+++...++|+++++.
T Consensus       322 p--~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  322 P--HSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             C--ceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence            3  678888999999999999999998888888888899999999999999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.93  E-value=5.2e-25  Score=181.93  Aligned_cols=152  Identities=32%  Similarity=0.501  Sum_probs=121.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      .|||++++++|+||||++.....         .....|+||+++++ ++++.+.+++..||||+++||++.|||+++..+
T Consensus        87 ~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   87 RPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             CCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence            48999999999999999973210         00112999999998 899999999999999999999999999999999


Q ss_pred             EEEEEEecC--CCCCceeEEeccC--CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           81 RCRRYWLKG--PRQGRLESFIEHL--PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        81 ~I~~~~~~~--~~~~~~~~~~~~~--~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      +|++|+++.  ..+...+++++..  .+.||||++|++|+|||+.+.                                 
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---------------------------------  203 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---------------------------------  203 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------------------------------
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------------------------------
Confidence            999999973  2355667776432  246999999999999999987                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe---CCEEEEeeC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF---EDNLYMASI  202 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~---~~~Lyv~~~  202 (225)
                         .++|.+++++|+++..+..|..    .+|.+++.   .++|||++.
T Consensus       204 ---~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  204 ---GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             ---TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred             ---CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence               6799999999999999999832    57888874   489999975

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.6e-24  Score=182.36  Aligned_cols=170  Identities=26%  Similarity=0.407  Sum_probs=131.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .|||+.++++|+|||++++. +.     .+..+....|+||++|+. +.++.+..+ +..||||+|||||+.||++|+..
T Consensus       112 r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence            48999999999999999982 11     223345678899999986 555555554 99999999999999999999999


Q ss_pred             CEEEEEEecC--CCCCcee--EEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           80 FRCRRYWLKG--PRQGRLE--SFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        80 ~~I~~~~~~~--~~~~~~~--~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      ++|+||+.+.  .......  ++.+..+|.|||+++|++|+||++....                               
T Consensus       185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~-------------------------------  233 (307)
T COG3386         185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG-------------------------------  233 (307)
T ss_pred             CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC-------------------------------
Confidence            9999999872  2233333  3333467899999999999999744330                               


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCCCCe------------EEEEeCCCcc
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQSKF------------VGKLPLNTPE  216 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~~~~------------i~~~~~~~~~  216 (225)
                          .++|.+++|+|+++..+..|..    .+|.+++.+   ++|||++...+.            +..++.....
T Consensus       234 ----g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~~~~~~~~~~~G~lf~~~~~~~G  301 (307)
T COG3386         234 ----GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGMSRMLTADPLGGGLFSLRLEVKG  301 (307)
T ss_pred             ----CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCCCccccccccCceEEEEecccCC
Confidence                4599999999999999999853    356666654   999999988854            7777666553

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.88  E-value=2.3e-22  Score=139.52  Aligned_cols=87  Identities=55%  Similarity=0.990  Sum_probs=73.9

Q ss_pred             CcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ||++++++ |.|||||++.+|.+.+++.+++++.++|+|++||+.+++++++++++.+||||++++|+++|+|+|+...|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            89999998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecC
Q 047259           82 CRRYWLKG   89 (225)
Q Consensus        82 I~~~~~~~   89 (225)
                      |+||+++|
T Consensus        81 i~rywl~G   88 (89)
T PF03088_consen   81 ILRYWLKG   88 (89)
T ss_dssp             EEEEESSS
T ss_pred             EEEEEEeC
Confidence            99999875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.70  E-value=5.2e-16  Score=126.54  Aligned_cols=159  Identities=19%  Similarity=0.269  Sum_probs=128.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      |.||+.++||.+|||.+.                 +|.|-++|+.+|+++... .....|.||...|||. +||+|++. 
T Consensus        64 p~dvapapdG~VWft~qg-----------------~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-  124 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQG-----------------TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-  124 (353)
T ss_pred             ccccccCCCCceEEecCc-----------------cccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-
Confidence            678999999999999987                 678999999999988764 5568899999999998 99999987 


Q ss_pred             EEEEEEecCCCCCceeEEe---ccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           81 RCRRYWLKGPRQGRLESFI---EHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~---~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .|.|++.++.   ..+.|.   +...+.-+-..+|++|+||.+...                                  
T Consensus       125 aI~R~dpkt~---evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~----------------------------------  167 (353)
T COG4257         125 AIGRLDPKTL---EVTRFPLPLEHADANLETAVFDPWGNLWFTGQI----------------------------------  167 (353)
T ss_pred             eeEEecCccc---ceEEeecccccCCCcccceeeCCCccEEEeecc----------------------------------
Confidence            9999998642   344443   112233456789999999998754                                  


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCcccccCCC
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTPEAELAPK  222 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~  222 (225)
                         +.--|+||.-..++++..|.|.   .+.++|. .+|.+|+++...+.|.+++.-+..+|..|.
T Consensus       168 ---G~yGrLdPa~~~i~vfpaPqG~---gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~  227 (353)
T COG4257         168 ---GAYGRLDPARNVISVFPAPQGG---GPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ  227 (353)
T ss_pred             ---ccceecCcccCceeeeccCCCC---CCcceEECCCCcEEEEeccccceEEcccccCCcceecC
Confidence               2234899998889999999885   4566665 589999999999999999988888887664

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.69  E-value=1.9e-15  Score=120.72  Aligned_cols=153  Identities=20%  Similarity=0.291  Sum_probs=121.3

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      .||--++|+|+.|..-|.. ++.      . .+...|.+|.+-+. ++++++...+..+|||+|+.|.+..|+.|+.+..
T Consensus       111 ~NDgkvdP~Gryy~GtMad-~~~------~-le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMAD-FGD------D-LEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             cccCccCCCCceeeeeecc-ccc------c-ccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceE
Confidence            4788899999999988862 221      1 13346778887775 8999999999999999999999999999999999


Q ss_pred             EEEEE--ecCCCCCceeEEecc------CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           82 CRRYW--LKGPRQGRLESFIEH------LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        82 I~~~~--~~~~~~~~~~~~~~~------~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      |..|+  ..++.+.+..++.+-      .+-.||||++|.+|+|||+.+.                              
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------------------------------  231 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------------------------------  231 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------------------------------
Confidence            96655  555556666665541      2237999999999999999998                              


Q ss_pred             cCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCC
Q 047259          154 PLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQ  203 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~  203 (225)
                            .+.|+++||. ||++..+..|.-    .+|.+++.+   +-||++...
T Consensus       232 ------g~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  232 ------GGTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             ------CcEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEehh
Confidence                  7899999996 999999999854    478888755   467887643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.64  E-value=2.2e-14  Score=118.43  Aligned_cols=159  Identities=18%  Similarity=0.284  Sum_probs=115.4

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEe-cCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALS-KDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~-~dg~~Lyv~~~~   78 (225)
                      +|++++.++ +|+||++|..                 .+.|+++++++++.+......  |+|++++ +++ .|||++..
T Consensus         1 l~Egp~~d~~~g~l~~~D~~-----------------~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~   60 (246)
T PF08450_consen    1 LGEGPVWDPRDGRLYWVDIP-----------------GGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSG   60 (246)
T ss_dssp             CEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETT
T ss_pred             CCcceEEECCCCEEEEEEcC-----------------CCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcC
Confidence            578999998 8999999987                 689999999877766544333  9999999 664 59999975


Q ss_pred             CCEEEEEEecCCCCCceeEEecc-----CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      .  +..+++++   +..+.+...     ....|+++++|++|+||+++......                          
T Consensus        61 ~--~~~~d~~~---g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~--------------------------  109 (246)
T PF08450_consen   61 G--IAVVDPDT---GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA--------------------------  109 (246)
T ss_dssp             C--EEEEETTT---TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT--------------------------
T ss_pred             c--eEEEecCC---CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcc--------------------------
Confidence            4  44457654   345555542     12368999999999999999874310                          


Q ss_pred             cCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCccc
Q 047259          154 PLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                        .....+.|++++++|++......     +..+.+++..  ++.||+++...++|.+++++....
T Consensus       110 --~~~~~g~v~~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~  168 (246)
T PF08450_consen  110 --SGIDPGSVYRIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG  168 (246)
T ss_dssp             --TCGGSEEEEEEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred             --ccccccceEEECCCCeEEEEecC-----cccccceEECCcchheeecccccceeEEEecccccc
Confidence              11002899999999887555442     3446666653  568999999999999999986554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.62  E-value=6.1e-14  Score=136.47  Aligned_cols=161  Identities=22%  Similarity=0.226  Sum_probs=118.9

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe---------------cCccccceeE
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH---------------EGFYFANGVA   64 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---------------~~~~~pnGi~   64 (225)
                      .|.+|++++ +|.+|+++.+                 +++|+++|..++.+....               ..+..|+||+
T Consensus       684 ~P~gVa~dp~~g~LyVad~~-----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIa  746 (1057)
T PLN02919        684 SPWDVCFEPVNEKVYIAMAG-----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGIS  746 (1057)
T ss_pred             CCeEEEEecCCCeEEEEECC-----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEE
Confidence            378999999 6799999987                 567788877656554332               1346799999


Q ss_pred             EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec----------------c-----CCCCCCceEECCCCCEEEEeec
Q 047259           65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE----------------H-----LPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----------------~-----~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ++||++.|||+++.+++|++|+++++.   ...+..                .     ....|.++++|++|++||++..
T Consensus       747 vspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~  823 (1057)
T PLN02919        747 LSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY  823 (1057)
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence            999999999999999999999987421   111110                0     0125999999999999999988


Q ss_pred             CCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC------CC----CcccceeEEEE-
Q 047259          124 MNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP------NA----TYISFVTSAVE-  192 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p------~g----~~~~~~t~~~~-  192 (225)
                                                          .++|.++|+++..+..+...      +|    ..+..+.+++. 
T Consensus       824 ------------------------------------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd  867 (1057)
T PLN02919        824 ------------------------------------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG  867 (1057)
T ss_pred             ------------------------------------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence                                                66899999876554444321      11    12456777765 


Q ss_pred             eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          193 FEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       193 ~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      .+|+|||++..+++|.++++.+...
T Consensus       868 ~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        868 ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCcc
Confidence            4789999999999999999987543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.46  E-value=8.7e-12  Score=121.60  Aligned_cols=158  Identities=16%  Similarity=0.257  Sum_probs=111.8

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-Eec--------------CccccceeE
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHE--------------GFYFANGVA   64 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~--------------~~~~pnGi~   64 (225)
                      ||.++++++ +|+|||+|.+                 +++|.++|.+ +.+.. +..              .+..|.||+
T Consensus       569 ~P~gvavd~~~g~lyVaDs~-----------------n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIa  630 (1057)
T PLN02919        569 FPGKLAIDLLNNRLFISDSN-----------------HNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLA  630 (1057)
T ss_pred             CCceEEEECCCCeEEEEECC-----------------CCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEE
Confidence            788999997 5789999997                 6789999986 44433 221              135799999


Q ss_pred             EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc----------------CCCCCCceEECC-CCCEEEEeecCCch
Q 047259           65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH----------------LPGGPDNINLAP-DGSFWVALIKMNQT  127 (225)
Q Consensus        65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~----------------~~g~Pd~i~~d~-~G~l~v~~~~~~~~  127 (225)
                      ++++++.|||+|+.+++|.+++..+.   ..+++...                .-..|.++++|+ +|.+||++.+    
T Consensus       631 vd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~----  703 (1057)
T PLN02919        631 YNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG----  703 (1057)
T ss_pred             EeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC----
Confidence            99998889999999999999998642   23333210                012588999999 6889999987    


Q ss_pred             hhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC------CC-----CcccceeEEEEe--C
Q 047259          128 GVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP------NA-----TYISFVTSAVEF--E  194 (225)
Q Consensus       128 ~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p------~g-----~~~~~~t~~~~~--~  194 (225)
                                                      ..+|.++|+.+..+..+...      ++     ..+..+++++..  +
T Consensus       704 --------------------------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG  751 (1057)
T PLN02919        704 --------------------------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL  751 (1057)
T ss_pred             --------------------------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCC
Confidence                                            45677777653333333210      01     113455666543  4


Q ss_pred             CEEEEeeCCCCeEEEEeCCCc
Q 047259          195 DNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       195 ~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ++|||++..+++|.++++++.
T Consensus       752 ~~LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        752 KELYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             CEEEEEECCCCeEEEEECCCC
Confidence            679999999999999998753

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.42  E-value=6.8e-12  Score=102.69  Aligned_cols=155  Identities=16%  Similarity=0.188  Sum_probs=116.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      .|...+|++|++|||.+...               .|   ++|+.++.+++.. .....|+||+..|||. +|+++...+
T Consensus       150 let~vfD~~G~lWFt~q~G~---------------yG---rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagn  210 (353)
T COG4257         150 LETAVFDPWGNLWFTGQIGA---------------YG---RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGN  210 (353)
T ss_pred             ccceeeCCCccEEEeecccc---------------ce---ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEecccc
Confidence            36778999999999987522               23   6677666666553 3457899999999997 999999999


Q ss_pred             EEEEEEecCCCCCceeEEec--cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           81 RCRRYWLKGPRQGRLESFIE--HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      .|.|+++..   +..+++..  .+...-..+-.|+.|++|++.++                                   
T Consensus       211 aiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg-----------------------------------  252 (353)
T COG4257         211 AIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-----------------------------------  252 (353)
T ss_pred             ceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccC-----------------------------------
Confidence            999999864   24444432  11223578899999999999888                                   


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                       .+.+.+|||.-+.=..+..|..+ ...-+.-++..+++|++++..+.|.+|+..+.
T Consensus       253 -~g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         253 -TGSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             -CceeeEeCcccccceeeeCCCCC-CCcceeeeccCCcEEeeccccCceeecCcccc
Confidence             77999999986655678887654 33344445667999999999999999976554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.39  E-value=4.2e-11  Score=104.73  Aligned_cols=179  Identities=13%  Similarity=0.163  Sum_probs=114.9

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCc-EEEEEeCCC--C---eEEEEecCccccceeEEecCCCEEEE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHG-QLLKYDPEL--E---ETTVLHEGFYFANGVALSKDENFVVV   74 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~--~---~~~~~~~~~~~pnGi~~~~dg~~Lyv   74 (225)
                      .|-+|+++++|+||++++.. |...     .......+ +|++++..+  |   +++++++++..|+||++.++|  |||
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~-y~~~-----~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV   86 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGIT-YSRP-----AGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV   86 (367)
T ss_pred             CCceeeECCCCCEEEEeCCc-CCCC-----CCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE
Confidence            37789999999999999852 2111     11112234 898887532  3   456778999999999999987  999


Q ss_pred             EeCCCCEEEEEE-ecCC--CCCceeEEeccCC-------CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259           75 CESWKFRCRRYW-LKGP--RQGRLESFIEHLP-------GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQA  144 (225)
Q Consensus        75 ~~~~~~~I~~~~-~~~~--~~~~~~~~~~~~~-------g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~  144 (225)
                      ++.  .+|+++. .++.  ..+..++++...+       ..+.++++++||+||++.......+..    .+.       
T Consensus        87 ~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~----~~~-------  153 (367)
T TIGR02604        87 ATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT----RPG-------  153 (367)
T ss_pred             eCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec----cCC-------
Confidence            875  4799985 3332  2225566665332       238899999999999998853211100    000       


Q ss_pred             hhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEE
Q 047259          145 YPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKL  210 (225)
Q Consensus       145 ~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~  210 (225)
                      .+... .   ...  .+.|+|++|+|...+.+..  |  +..+.+++. ..|.||+++.......++
T Consensus       154 ~~~~~-~---~~~--~g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d~~G~l~~tdn~~~~~~~i  210 (367)
T TIGR02604       154 TSDES-R---QGL--GGGLFRYNPDGGKLRVVAH--G--FQNPYGHSVDSWGDVFFCDNDDPPLCRV  210 (367)
T ss_pred             CccCc-c---ccc--CceEEEEecCCCeEEEEec--C--cCCCccceECCCCCEEEEccCCCceeEE
Confidence            00000 0   011  5799999999987788774  3  344555555 478999998765554443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=99.33  E-value=1.6e-11  Score=84.74  Aligned_cols=82  Identities=30%  Similarity=0.557  Sum_probs=68.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhh--hcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYK--DLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~--~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      |||++....++|+|+++. ++ ..|+.  +.+.+.+.|.|+.||++  +++.+++++.+||||+++||++.|||++...+
T Consensus         1 NDIvavG~~sFy~TNDhy-f~-~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~   76 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDHY-FT-DPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAH   76 (86)
T ss_pred             CCEEEECcCcEEEECchh-hC-cHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence            789988888999999982 32 23332  44456789999999974  78889999999999999999999999999999


Q ss_pred             EEEEEEec
Q 047259           81 RCRRYWLK   88 (225)
Q Consensus        81 ~I~~~~~~   88 (225)
                      .|..|..+
T Consensus        77 ~I~vy~~~   84 (86)
T PF01731_consen   77 SIHVYKRH   84 (86)
T ss_pred             eEEEEEec
Confidence            99999864

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=1.8e-10  Score=99.85  Aligned_cols=163  Identities=20%  Similarity=0.285  Sum_probs=108.4

Q ss_pred             CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC--CCCeEEE----EecCccccceeEEecCCCEEE
Q 047259            1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP--ELEETTV----LHEGFYFANGVALSKDENFVV   73 (225)
Q Consensus         1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~~~~~~~----~~~~~~~pnGi~~~~dg~~Ly   73 (225)
                      +|+.+.++|||+ +|++|.+                 ..+|+.|+.  .+++++.    .......|..|+|+||++++|
T Consensus       145 h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y  207 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY  207 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE
T ss_pred             cceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE
Confidence            467899999986 8888886                 345655554  3333544    245678899999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCCCceeEEe--ccCC----C--CCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259           74 VCESWKFRCRRYWLKGPRQGRLESFI--EHLP----G--GPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQA  144 (225)
Q Consensus        74 v~~~~~~~I~~~~~~~~~~~~~~~~~--~~~~----g--~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~  144 (225)
                      |+....+.|..|+++.. .+..+...  ...+    +  .|.+|++++||+ |||+..+..                   
T Consensus       208 v~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~-------------------  267 (345)
T PF10282_consen  208 VVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN-------------------  267 (345)
T ss_dssp             EEETTTTEEEEEEEETT-TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-------------------
T ss_pred             EecCCCCcEEEEeeccc-CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-------------------
Confidence            99999999999998721 12222211  1121    1  477899999997 788876621                   


Q ss_pred             hhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCC-CCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          145 YPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPN-ATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       145 ~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~-g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                                     .-.++.+|++ |++...-..+. |+   .|..+..  ++++|||++..++.|.+|+++.+.-.
T Consensus       268 ---------------sI~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  268 ---------------SISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             ---------------EEEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             ---------------EEEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence                           4567778654 66543322222 43   2444444  68999999999999999998755433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.20  E-value=2.4e-09  Score=91.89  Aligned_cols=160  Identities=12%  Similarity=0.157  Sum_probs=102.0

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEE------EecCccccceeEEecCCCEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTV------LHEGFYFANGVALSKDENFVV   73 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~------~~~~~~~pnGi~~~~dg~~Ly   73 (225)
                      |+.++++++|+ +|+++..                 .+.|..||.++ +.+..      .......|.+++++|||++||
T Consensus       128 ~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        128 CHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             ccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence            56778888874 6677665                 45666666543 43321      123356799999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCCCceeEEec--cCC------CCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259           74 VCESWKFRCRRYWLKGPRQGRLESFIE--HLP------GGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQA  144 (225)
Q Consensus        74 v~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~------g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~  144 (225)
                      +++...+.|..|+++.. .+..+....  ..|      ..|.+|+++++|+ +|+++....                   
T Consensus       191 v~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~-------------------  250 (330)
T PRK11028        191 CVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS-------------------  250 (330)
T ss_pred             EEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC-------------------
Confidence            99999999999998731 112222211  111      1344689999997 788754311                   


Q ss_pred             hhhhhhhhccCCCCcceEEEEECCCCcEEEEEE-CCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          145 YPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       145 ~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~-~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                                     .-.|+.+++++.....+. .+.+.   .+..+.  +++++||+++..++.|.+++++...
T Consensus       251 ---------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~  307 (330)
T PRK11028        251 ---------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET  307 (330)
T ss_pred             ---------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence                           456677777764333332 22232   122233  4578999999989999999887543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=3.3e-09  Score=90.31  Aligned_cols=159  Identities=17%  Similarity=0.271  Sum_probs=109.3

Q ss_pred             CcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ++...+++. .||++|-.                 .++|+++++.+++.+........++++.++.++. |.+++.+   
T Consensus        28 EgP~w~~~~~~L~w~DI~-----------------~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~-Lv~~~~g---   86 (307)
T COG3386          28 EGPVWDPDRGALLWVDIL-----------------GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR-LIACEHG---   86 (307)
T ss_pred             cCccCcCCCCEEEEEeCC-----------------CCeEEEecCCcCceEEEECCCCcccceeecCCCe-EEEEccc---
Confidence            344445544 37777665                 6799999998788888877778899999998875 8888764   


Q ss_pred             EEEEEecCCCCCce-eEEeccC----CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           82 CRRYWLKGPRQGRL-ESFIEHL----PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        82 I~~~~~~~~~~~~~-~~~~~~~----~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      +.+++.+.   +.. +.+.+..    ...|+...++++|++|+++.... . .    ..+                 ...
T Consensus        87 ~~~~~~~~---~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~-~-~----~~~-----------------~~~  140 (307)
T COG3386          87 VRLLDPDT---GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYF-D-L----GKS-----------------EER  140 (307)
T ss_pred             cEEEeccC---CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCcc-c-c----Ccc-----------------ccC
Confidence            44455442   122 4444322    24689999999999999998820 0 0    000                 012


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      +  .+.|+++||+|++++.+...    +..+++++  +++..||++++..++|.+++++.
T Consensus       141 ~--~G~lyr~~p~g~~~~l~~~~----~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         141 P--TGSLYRVDPDGGVVRLLDDD----LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             C--cceEEEEcCCCCEEEeecCc----EEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            2  77999999998887666541    22233344  45679999999999999999984

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.10  E-value=2.2e-08  Score=86.91  Aligned_cols=163  Identities=18%  Similarity=0.219  Sum_probs=102.9

Q ss_pred             CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEE--EEEeCCCCeEEEEe--------------cCccccceeEE
Q 047259            3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQL--LKYDPELEETTVLH--------------EGFYFANGVAL   65 (225)
Q Consensus         3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~~~--------------~~~~~pnGi~~   65 (225)
                      -.++++++|+ ||+++-+                 .|.|  +.++.+ |++....              +....|..+.+
T Consensus        90 ~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~  151 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF  151 (345)
T ss_dssp             EEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred             EEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEE
Confidence            4578888886 6666543                 3444  555543 5554431              23467889999


Q ss_pred             ecCCCEEEEEeCCCCEEEEEEecCCC--CCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHH
Q 047259           66 SKDENFVVVCESWKFRCRRYWLKGPR--QGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLL  142 (225)
Q Consensus        66 ~~dg~~Lyv~~~~~~~I~~~~~~~~~--~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~  142 (225)
                      +|||++|||++.+.++|+.|+++...  +.....+.-.....|..|+++++|+ +||+.-...                 
T Consensus       152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~-----------------  214 (345)
T PF10282_consen  152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN-----------------  214 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT-----------------
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC-----------------
Confidence            99999999999999999999997532  2221112111234699999999986 677764411                 


Q ss_pred             HhhhhhhhhhccCCCCcceEEEEEC-CCCcE--EEEEEC-CCCC-cccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          143 QAYPELINLLIPLGNDAGARIVKVD-THGKI--IMDFND-PNAT-YISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       143 ~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~--~~~~~~-p~g~-~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                                       .-.++.++ .+|++  +..+.. |.+- ....++.+..  ++.+||+++-..+.|.+|+++..
T Consensus       215 -----------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  215 -----------------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             -----------------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             -----------------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence                             44566777 45644  333332 2221 0124555554  47899999999999999999765


Q ss_pred             cc
Q 047259          216 EA  217 (225)
Q Consensus       216 ~~  217 (225)
                      ..
T Consensus       278 ~g  279 (345)
T PF10282_consen  278 TG  279 (345)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.04  E-value=1.2e-08  Score=89.33  Aligned_cols=99  Identities=18%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEE-eCC-----CCeEEEEecC--------ccccceeEEe
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKY-DPE-----LEETTVLHEG--------FYFANGVALS   66 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~-----~~~~~~~~~~--------~~~pnGi~~~   66 (225)
                      +|++|++.++| ||+++..                   +|+++ |.+     +++.+.++++        ...+++++++
T Consensus        73 ~p~Gi~~~~~G-lyV~~~~-------------------~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g  132 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVATPP-------------------DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG  132 (367)
T ss_pred             CccceeEecCC-EEEeCCC-------------------eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC
Confidence            47889998888 9998654                   56666 221     1144444433        2458999999


Q ss_pred             cCCCEEEEEeCC-------------------CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecC
Q 047259           67 KDENFVVVCESW-------------------KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKM  124 (225)
Q Consensus        67 ~dg~~Lyv~~~~-------------------~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~  124 (225)
                      |||+ ||++...                   .++|+||++++.   ..++++.. ...|.|+++|++|++|++++..
T Consensus       133 pDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       133 PDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence            9996 9998762                   157999999863   45666643 3469999999999999999863

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.04  E-value=2.2e-08  Score=89.16  Aligned_cols=177  Identities=16%  Similarity=0.197  Sum_probs=103.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-------ec-CccccceeEEecCC---
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-------HE-GFYFANGVALSKDE---   69 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-------~~-~~~~pnGi~~~~dg---   69 (225)
                      +|-+|++.+||++|||+..                 .|+|++++..++..+.+       .. +....-||+++||=   
T Consensus        31 ~Pw~maflPDG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~   93 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQE   93 (454)
T ss_pred             CceEEEEcCCCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcccc
Confidence            4788999999999999764                 58999998754433222       11 45678999999872   


Q ss_pred             ---CEEEEEeCC---------CCEEEEEEecC--CCCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhhhh
Q 047259           70 ---NFVVVCESW---------KFRCRRYWLKG--PRQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGVRA  131 (225)
Q Consensus        70 ---~~Lyv~~~~---------~~~I~~~~~~~--~~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~~~  131 (225)
                         ++|||+.+.         ..+|.|+.++.  ..+...+++....|.    .-..|++++||.||++.........  
T Consensus        94 ~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~--  171 (454)
T TIGR03606        94 KGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQG--  171 (454)
T ss_pred             CCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCc--
Confidence               479998632         46899998863  223333344433332    2357999999999999887421000  


Q ss_pred             hhcChhHHHH-HHhhhhhhhhhc-cCCCCcceEEEEECCCCcE-----------EEEEECCCCCcccceeEEEE-eCCEE
Q 047259          132 IQSCPDKWKL-LQAYPELINLLI-PLGNDAGARIVKVDTHGKI-----------IMDFNDPNATYISFVTSAVE-FEDNL  197 (225)
Q Consensus       132 ~~~~~~~r~~-~~~~p~~~~~~~-~~~~~~~~~V~~~d~~G~~-----------~~~~~~p~g~~~~~~t~~~~-~~~~L  197 (225)
                         +...+.. ...+|.. ..+. .+.....++|+|+++||++           -++++.  |  +.++-.++. .+++|
T Consensus       172 ---~n~~~~~~aQ~~~~~-~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G--~RNp~Gla~dp~G~L  243 (454)
T TIGR03606       172 ---ANFFLPNQAQHTPTQ-QELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--G--HRNPQGLAFTPDGTL  243 (454)
T ss_pred             ---ccccCcchhcccccc-ccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--e--ccccceeEECCCCCE
Confidence               0000000 0000100 0000 0111127899999999973           123332  1  223334443 37899


Q ss_pred             EEeeCCC
Q 047259          198 YMASIQS  204 (225)
Q Consensus       198 yv~~~~~  204 (225)
                      |+++.+.
T Consensus       244 w~~e~Gp  250 (454)
T TIGR03606       244 YASEQGP  250 (454)
T ss_pred             EEEecCC
Confidence            9998776

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.04  E-value=5.1e-08  Score=83.71  Aligned_cols=157  Identities=14%  Similarity=0.127  Sum_probs=100.0

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEE--EEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEe
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQL--LKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      |+.++++++|+ ||++...                 .+.|  |.++ ++++++...  .....|.+|+++||+++||++.
T Consensus        37 ~~~l~~spd~~~lyv~~~~-----------------~~~i~~~~~~-~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~   98 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRP-----------------EFRVLSYRIA-DDGALTFAAESPLPGSPTHISTDHQGRFLFSAS   98 (330)
T ss_pred             CccEEECCCCCEEEEEECC-----------------CCcEEEEEEC-CCCceEEeeeecCCCCceEEEECCCCCEEEEEE
Confidence            56788888886 6776543                 3445  5554 245554432  2234789999999999999999


Q ss_pred             CCCCEEEEEEecCC-CCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           77 SWKFRCRRYWLKGP-RQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        77 ~~~~~I~~~~~~~~-~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      ...++|..|+++.. .......... ....|-+++++++|+ +||++....                             
T Consensus        99 ~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~-----------------------------  148 (330)
T PRK11028         99 YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKED-----------------------------  148 (330)
T ss_pred             cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCC-----------------------------
Confidence            98999999998631 1211111111 112478899999986 677776511                             


Q ss_pred             CCCCcceEEEEECCCCcEEE----EEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCC
Q 047259          155 LGNDAGARIVKVDTHGKIIM----DFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~G~~~~----~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                           .-.|+.++.+|++..    ....+.|.   .+..++  +++.+||+++..++.|.+++++.
T Consensus       149 -----~v~v~d~~~~g~l~~~~~~~~~~~~g~---~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        149 -----RIRLFTLSDDGHLVAQEPAEVTTVEGA---GPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             -----EEEEEEECCCCcccccCCCceecCCCC---CCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence                 345555665565432    22333343   233333  45678999999999999999874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=4e-08  Score=86.43  Aligned_cols=163  Identities=20%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .|.+++++++| .+|+++...               ..+.+..+|..++++.........|.|++++|+|+.+|+++...
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             CCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCC
Confidence            47899999998 799999961               26799999998777766655555789999999999999999999


Q ss_pred             CEEEEEEecCCCCCcee--EEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           80 FRCRRYWLKGPRQGRLE--SFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~--~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      ++|..++.++.......  ... .....|.+++++++|. +||+.....                               
T Consensus       182 ~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~-------------------------------  229 (381)
T COG3391         182 NTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG-------------------------------  229 (381)
T ss_pred             CeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCC-------------------------------
Confidence            99999997653111100  001 1334799999999997 899887721                               


Q ss_pred             CCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          157 NDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       157 ~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                         ...|.++|... ++.. ...+.++..+......+.+..+|+.....+.+.+++...
T Consensus       230 ---~~~v~~id~~~~~v~~-~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         230 ---SNNVLKIDTATGNVTA-TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             ---CceEEEEeCCCceEEE-eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence               25788888764 4433 222222211111122345666777766666666665544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.94  E-value=1e-07  Score=82.45  Aligned_cols=121  Identities=13%  Similarity=0.103  Sum_probs=89.7

Q ss_pred             cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCEE
Q 047259           12 SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------WKFRC   82 (225)
Q Consensus        12 ~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------~~~~I   82 (225)
                      ++|++|....            +. .|+|+.+|.+++++...++....|+|+ ++|||+.||||++         ..+.|
T Consensus        14 ~v~V~d~~~~------------~~-~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V   79 (352)
T TIGR02658        14 RVYVLDPGHF------------AA-TTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYV   79 (352)
T ss_pred             EEEEECCccc------------cc-CceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEE
Confidence            6999988621            11 389999999888887777788899997 9999999999999         89999


Q ss_pred             EEEEecCCCCCceeEEecc-----CCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           83 RRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      ..||..+.... .++-...     ....|..+++++||+ |||++..+                                
T Consensus        80 ~v~D~~t~~~~-~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p--------------------------------  126 (352)
T TIGR02658        80 EVIDPQTHLPI-ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP--------------------------------  126 (352)
T ss_pred             EEEECccCcEE-eEEccCCCchhhccCccceEEECCCCCEEEEecCCC--------------------------------
Confidence            99998752111 1111110     112456999999997 78887662                                


Q ss_pred             CCcceEEEEECCC-CcEEEEEECCCCC
Q 047259          157 NDAGARIVKVDTH-GKIIMDFNDPNAT  182 (225)
Q Consensus       157 ~~~~~~V~~~d~~-G~~~~~~~~p~g~  182 (225)
                         ...|.++|.. ++++..+..|++.
T Consensus       127 ---~~~V~VvD~~~~kvv~ei~vp~~~  150 (352)
T TIGR02658       127 ---SPAVGVVDLEGKAFVRMMDVPDCY  150 (352)
T ss_pred             ---CCEEEEEECCCCcEEEEEeCCCCc
Confidence               4578888875 7888888877765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.91  E-value=9.5e-08  Score=80.87  Aligned_cols=147  Identities=18%  Similarity=0.205  Sum_probs=92.5

Q ss_pred             CCCcEEEcCC------CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc-----------------
Q 047259            1 FTNDVIEASD------GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF-----------------   57 (225)
Q Consensus         1 ~pndv~~~~d------G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-----------------   57 (225)
                      |.||++++..      +-+|+||++                 .+.|..||..+++...+..+.                 
T Consensus        62 ~lndl~VD~~~~~~~~~~aYItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~  124 (287)
T PF03022_consen   62 FLNDLVVDVRDGNCDDGFAYITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESF  124 (287)
T ss_dssp             GEEEEEEECTTTTS-SEEEEEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEE
T ss_pred             ccceEEEEccCCCCcceEEEEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceE
Confidence            4688888882      469999998                 235555565544433222111                 


Q ss_pred             ---cccceeEEec---CCCEEEEEeCCCCEEEEEEec---CCCCCc-------eeEEeccCCCCCCceEECCCCCEEEEe
Q 047259           58 ---YFANGVALSK---DENFVVVCESWKFRCRRYWLK---GPRQGR-------LESFIEHLPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        58 ---~~pnGi~~~~---dg~~Lyv~~~~~~~I~~~~~~---~~~~~~-------~~~~~~~~~g~Pd~i~~d~~G~l~v~~  121 (225)
                         ....||+++|   ||++||+......+++++..+   ......       .+.+. ..++..+|+++|++|+||.++
T Consensus       125 ~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~  203 (287)
T PF03022_consen  125 QWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTD  203 (287)
T ss_dssp             EETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEE
T ss_pred             ecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEec
Confidence               1256889877   889999999988999999864   111111       11221 122356899999999999999


Q ss_pred             ecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-----cEEEEEECCCCCcccceeEEEEeC--
Q 047259          122 IKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-----KIIMDFNDPNATYISFVTSAVEFE--  194 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-----~~~~~~~~p~g~~~~~~t~~~~~~--  194 (225)
                      ..                                    ...|.+.++++     +....+.+++.  +..+.++....  
T Consensus       204 ~~------------------------------------~~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~  245 (287)
T PF03022_consen  204 VE------------------------------------QNAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEG  245 (287)
T ss_dssp             CC------------------------------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--
T ss_pred             CC------------------------------------CCeEEEEeCCCCcCccchheeEEcCce--eeccceeeecccc
Confidence            88                                    67899999998     45455666543  45677776544  


Q ss_pred             -CEEEEeeCC
Q 047259          195 -DNLYMASIQ  203 (225)
Q Consensus       195 -~~Lyv~~~~  203 (225)
                       |.||+.+..
T Consensus       246 ~g~L~v~snr  255 (287)
T PF03022_consen  246 DGYLWVLSNR  255 (287)
T ss_dssp             TS-EEEEE-S
T ss_pred             CceEEEEECc
Confidence             999998743

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=1.6e-07  Score=82.59  Aligned_cols=157  Identities=15%  Similarity=0.137  Sum_probs=109.9

Q ss_pred             CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--
Q 047259            1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--   77 (225)
Q Consensus         1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--   77 (225)
                      +|+++++.++|+ +|+++..                 ...|..+|..+.++.........|.+++++++++.+||++.  
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~-----------------~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~  137 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGD-----------------SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN  137 (381)
T ss_pred             cccceeeCCCCCeEEEecCC-----------------CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc
Confidence            478899999886 9999875                 56888888654444443334459999999999999999999  


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      +++.|..++..+...... ++.   ...|.+++++++|. +|+++..                                 
T Consensus       138 ~~~~vsvid~~t~~~~~~-~~v---G~~P~~~a~~p~g~~vyv~~~~---------------------------------  180 (381)
T COG3391         138 GNNTVSVIDAATNKVTAT-IPV---GNTPTGVAVDPDGNKVYVTNSD---------------------------------  180 (381)
T ss_pred             CCceEEEEeCCCCeEEEE-Eec---CCCcceEEECCCCCeEEEEecC---------------------------------
Confidence            579999999875322222 222   22589999999998 9999955                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCC--CcccceeEEE--EeCCEEEEeeCCC--CeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNA--TYISFVTSAV--EFEDNLYMASIQS--KFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g--~~~~~~t~~~--~~~~~Lyv~~~~~--~~i~~~~~~~~  215 (225)
                         .+.|..+|.++..+.. ..+..  .....+-.+.  +.+.++|+....+  +.+.+++....
T Consensus       181 ---~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         181 ---DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             ---CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence               5678888887765443 22110  0122233333  3567799999888  58888877664

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.88  E-value=8.1e-08  Score=82.93  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=100.1

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE-EEE-------ecCccccceeEEecC---CC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET-TVL-------HEGFYFANGVALSKD---EN   70 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~-------~~~~~~pnGi~~~~d---g~   70 (225)
                      |-.|++.|||++|+++.                  .|+|++++.+ +.. ..+       ..+....-||+++|+   .+
T Consensus         4 P~~~a~~pdG~l~v~e~------------------~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~   64 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAER------------------SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNG   64 (331)
T ss_dssp             EEEEEEETTSCEEEEET------------------TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-
T ss_pred             ceEEEEeCCCcEEEEeC------------------CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCC
Confidence            56899999999999966                  4899999844 554 222       134467789999994   45


Q ss_pred             EEEEEeCCC--------CEEEEEEecCC--CCCceeEEeccCCC------CCCceEECCCCCEEEEeecCCchhhhhhhc
Q 047259           71 FVVVCESWK--------FRCRRYWLKGP--RQGRLESFIEHLPG------GPDNINLAPDGSFWVALIKMNQTGVRAIQS  134 (225)
Q Consensus        71 ~Lyv~~~~~--------~~I~~~~~~~~--~~~~~~~~~~~~~g------~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~  134 (225)
                      +|||+.+..        .+|.|+..+..  .....++++...+.      ....|++++||.|||+.......-   ...
T Consensus        65 ~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~---~~~  141 (331)
T PF07995_consen   65 YLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDD---NAQ  141 (331)
T ss_dssp             EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGG---GGC
T ss_pred             EEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcc---ccc
Confidence            799998854        68999998743  33444444433222      235699999999999998743200   000


Q ss_pred             ChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcE-------------EEEEECCCCCcccceeEEEEe-C-CEEEE
Q 047259          135 CPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKI-------------IMDFNDPNATYISFVTSAVEF-E-DNLYM  199 (225)
Q Consensus       135 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~-------------~~~~~~p~g~~~~~~t~~~~~-~-~~Lyv  199 (225)
                                          ......++|+|++++|++             .+.++.  |  +..+-.++.+ . |.||+
T Consensus       142 --------------------~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~l~~  197 (331)
T PF07995_consen  142 --------------------DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGRLWA  197 (331)
T ss_dssp             --------------------STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEE
T ss_pred             --------------------ccccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCcEEE
Confidence                                111127899999999973             122221  2  4455566654 4 89999


Q ss_pred             eeCCCCe
Q 047259          200 ASIQSKF  206 (225)
Q Consensus       200 ~~~~~~~  206 (225)
                      ++.+.+.
T Consensus       198 ~d~G~~~  204 (331)
T PF07995_consen  198 ADNGPDG  204 (331)
T ss_dssp             EEE-SSS
T ss_pred             EccCCCC
Confidence            9977643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=6.7e-07  Score=75.76  Aligned_cols=168  Identities=14%  Similarity=0.149  Sum_probs=113.9

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEe
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL----HEGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      ++-..++|+|+ ++++|-+                 .-+|+.|+.+.|+++..    .....+|.-|+|.|+++..|+..
T Consensus       147 ~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~  209 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN  209 (346)
T ss_pred             cceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe
Confidence            44566788886 4444444                 55777777666776553    35668899999999999999999


Q ss_pred             CCCCEEEEEEecCCCCCceeEEec--cCC----C--CCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhh
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFIE--HLP----G--GPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPE  147 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~~--~~~----g--~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~  147 (225)
                      .-++.|..+..++. .+..+.+..  .+|    +  .-..|.++++|+ ||+++-+ .                      
T Consensus       210 EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg-~----------------------  265 (346)
T COG2706         210 ELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG-H----------------------  265 (346)
T ss_pred             ccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC-C----------------------
Confidence            99999999888753 333333221  122    1  234689999998 5555544 1                      


Q ss_pred             hhhhhccCCCCcceEEEEECCCCcEEEEEE-CCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccccCC
Q 047259          148 LINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAP  221 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~-~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~  221 (225)
                               +  .-.+.++|++|..+..+. -+.+...+.--.+...++.|+++.-.++.|.+|.++.+.-++..
T Consensus       266 ---------d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         266 ---------D--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             ---------C--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence                     1  457899999865444432 23332234333445678999999999999999999988776654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.81  E-value=2e-06  Score=71.46  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      ++.++++++|+ +|++...                 .+.|+.+|..+++..........+..++++||++.||++....+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~   95 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASD-----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDN   95 (300)
T ss_pred             CCceEECCCCCEEEEEECC-----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCC
Confidence            35567777775 5555443                 56888899877766544444455788999999999999988788


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .|..+++.+.  .....+ + ....|.+++++++|.++++...
T Consensus        96 ~l~~~d~~~~--~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~  134 (300)
T TIGR03866        96 LVTVIDIETR--KVLAEI-P-VGVEPEGMAVSPDGKIVVNTSE  134 (300)
T ss_pred             eEEEEECCCC--eEEeEe-e-CCCCcceEEECCCCCEEEEEec
Confidence            9999998642  111111 1 2335789999999998876654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.66  E-value=8.1e-06  Score=67.80  Aligned_cols=137  Identities=15%  Similarity=-0.032  Sum_probs=84.3

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-c---CCCCCCceEECCC
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-H---LPGGPDNINLAPD  114 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~---~~g~Pd~i~~d~~  114 (225)
                      .++.+|..+++..........|..+++++|++.||++....+.|..+++++...-....+.. .   ....|.+++++++
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence            35566776555443332335688999999999898887777899999987531111001110 0   1124678999999


Q ss_pred             CCE-EEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE-
Q 047259          115 GSF-WVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV-  191 (225)
Q Consensus       115 G~l-~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~-  191 (225)
                      |+. |++...                                    ...+.++|.+ ++++..+..  +.   .+..+. 
T Consensus       218 g~~~~~~~~~------------------------------------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~  256 (300)
T TIGR03866       218 GKTAFVALGP------------------------------------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAF  256 (300)
T ss_pred             CCEEEEEcCC------------------------------------CCeEEEEECCCCcEEEEEEe--CC---CcceEEE
Confidence            985 665544                                    2346666664 566554432  21   122333 


Q ss_pred             -EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          192 -EFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       192 -~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                       +.+..||+++-.++.|.++++.+..
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence             3567788887778889999888754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=6e-06  Score=70.07  Aligned_cols=164  Identities=13%  Similarity=0.186  Sum_probs=103.3

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE---ecCc----------cccceeEEecC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL---HEGF----------YFANGVALSKD   68 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~---~~~~----------~~pnGi~~~~d   68 (225)
                      |.-|+++++|++.|+-.+.              .+.-+|+.+..+ |.+...   ....          ..+.-..++||
T Consensus        91 p~yvsvd~~g~~vf~AnY~--------------~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~  155 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYH--------------SGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD  155 (346)
T ss_pred             CeEEEECCCCCEEEEEEcc--------------CceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence            3567888888877775541              112344555443 543322   1111          22677889999


Q ss_pred             CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC-CCCCceEECCCCCE-EEEeecCCchhhhhhhcChhHHHHHHhhh
Q 047259           69 ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP-GGPDNINLAPDGSF-WVALIKMNQTGVRAIQSCPDKWKLLQAYP  146 (225)
Q Consensus        69 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-g~Pd~i~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~r~~~~~~p  146 (225)
                      +++|++++-+..+|..|+.+.+.+....... -.+ ..|+.|++-++|++ |+..--.                      
T Consensus       156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G~GPRHi~FHpn~k~aY~v~EL~----------------------  212 (346)
T COG2706         156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPGAGPRHIVFHPNGKYAYLVNELN----------------------  212 (346)
T ss_pred             CCEEEEeecCCceEEEEEcccCccccccccc-cCCCCCcceEEEcCCCcEEEEEeccC----------------------
Confidence            9999999999999999999753333222211 123 47999999999985 5554221                      


Q ss_pred             hhhhhhccCCCCcceEEEEECCC-CcE--EEEE-ECCCCCccc---ceeEEE--EeCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          147 ELINLLIPLGNDAGARIVKVDTH-GKI--IMDF-NDPNATYIS---FVTSAV--EFEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~V~~~d~~-G~~--~~~~-~~p~g~~~~---~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                                  +.-.|+.+++. |++  ++.+ ..|++  |.   +.+.+.  .++..||+++-+.+.|+.|.++...-
T Consensus       213 ------------stV~v~~y~~~~g~~~~lQ~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         213 ------------STVDVLEYNPAVGKFEELQTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             ------------CEEEEEEEcCCCceEEEeeeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence                        15577888886 543  2222 23433  22   223332  35789999999999999998887644

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.56  E-value=2.9e-06  Score=74.36  Aligned_cols=152  Identities=16%  Similarity=0.079  Sum_probs=92.4

Q ss_pred             cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      .+.+++||+ +|+++.                  .|.|..+|..++++.........|.|+++|+||+++|++....+.+
T Consensus        41 ~~~~s~Dgr~~yv~~r------------------dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v  102 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANR------------------DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTV  102 (369)
T ss_dssp             EEE-TT-SSEEEEEET------------------TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred             EEEecCCCCEEEEEcC------------------CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCce
Confidence            345667775 666632                  5789999998887666666677899999999999999999999999


Q ss_pred             EEEEecCCCCCceeEEec-cCC-----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           83 RRYWLKGPRQGRLESFIE-HLP-----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~-~~~-----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      ..+|.++  +.....+.. ..+     ..+.+|...+....|+.....                                
T Consensus       103 ~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--------------------------------  148 (369)
T PF02239_consen  103 SVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--------------------------------  148 (369)
T ss_dssp             EEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--------------------------------
T ss_pred             eEecccc--ccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--------------------------------
Confidence            9998754  222222111 111     112355556666666665441                                


Q ss_pred             CCcceEEEEECCC-CcEE--EEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTH-GKII--MDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~-G~~~--~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                         .+.|+.+|.+ .+.+  ..+.  .++ +  +-+...  .+.+++++...++.|.+++..+.
T Consensus       149 ---~~~I~vVdy~d~~~~~~~~i~--~g~-~--~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  149 ---TGEIWVVDYSDPKNLKVTTIK--VGR-F--PHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             ---TTEEEEEETTTSSCEEEEEEE----T-T--EEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             ---CCeEEEEEeccccccceeeec--ccc-c--ccccccCcccceeeecccccceeEEEeeccc
Confidence               4678888743 3322  2333  233 2  223332  35678888999999999986653

...

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.55  E-value=2.7e-05  Score=64.52  Aligned_cols=157  Identities=17%  Similarity=0.150  Sum_probs=108.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |.+++.+..+|.||-+...  +|             ..+|.++|..+|++...  .+.-.+..||++-.|  .||.-...
T Consensus        46 FTQGL~~~~~g~LyESTG~--yG-------------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk  108 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGL--YG-------------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWK  108 (264)
T ss_dssp             EEEEEEEEETTEEEEEECS--TT-------------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESS
T ss_pred             cCccEEecCCCEEEEeCCC--CC-------------cEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEec
Confidence            5677888778888888665  33             56899999998886543  455678999999965  59999999


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++..+.|+.++  +.....|.  .++..=||+.|.+ .||+++..                                   
T Consensus       109 ~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg~-~Li~SDGS-----------------------------------  148 (264)
T PF05096_consen  109 EGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDGK-RLIMSDGS-----------------------------------  148 (264)
T ss_dssp             SSEEEEEETTT--TEEEEEEE---SSS--EEEECSS-CEEEE-SS-----------------------------------
T ss_pred             CCeEEEEcccc--ceEEEEEe--cCCcceEEEcCCC-EEEEECCc-----------------------------------
Confidence            99999999875  33333443  3344458887753 79998865                                   


Q ss_pred             cceEEEEECCC-CcEEEEEECC-CCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          159 AGARIVKVDTH-GKIIMDFNDP-NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       159 ~~~~V~~~d~~-G~~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                        ..+..+||+ -+.+..+... +|+.+...+.+...+|.||---|.+++|.+++..+..
T Consensus       149 --~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  149 --SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             --SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred             --cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence              367888885 4565555432 4555667777877899999999999999999987643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.51  E-value=2.5e-06  Score=79.16  Aligned_cols=156  Identities=10%  Similarity=0.068  Sum_probs=109.2

Q ss_pred             CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .|++||++--+ ++|.||+-..               .-.|-.+|... +..++.+++-.|.+|++++=++-||++|+..
T Consensus      1069 SPEGiAVDh~~Rn~ywtDS~lD---------------~IevA~LdG~~-rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnR 1132 (1289)
T KOG1214|consen 1069 SPEGIAVDHIRRNMYWTDSVLD---------------KIEVALLDGSE-RKVLFYTDLVNPRAIVVDPIRGNLYWTDWNR 1132 (1289)
T ss_pred             Cccceeeeeccceeeeeccccc---------------hhheeecCCce-eeEEEeecccCcceEEeecccCceeeccccc
Confidence            48899999876 6999998621               12355666542 3334568899999999999888899999864


Q ss_pred             --CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           80 --FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        80 --~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                        -+|-+.+++|   .+.++|+...-++|+|+++|+.-+ |-.++.+                                 
T Consensus      1133 enPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAG--------------------------------- 1176 (1289)
T KOG1214|consen 1133 ENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAG--------------------------------- 1176 (1289)
T ss_pred             cCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecC---------------------------------
Confidence              4888999987   378888876668999999999765 5555655                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                         ..+..-+.++|.-.+++..  +  +.-+-.++-.++.+|.++|..++|..+.+...
T Consensus      1177 ---t~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1177 ---TKRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred             ---CcceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeecccc
Confidence               2234445566543333321  1  11223344456679999999999999887654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.43  E-value=2.8e-05  Score=68.14  Aligned_cols=137  Identities=15%  Similarity=0.155  Sum_probs=83.3

Q ss_pred             CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~  114 (225)
                      .|.|..+|.++.++....+ +...+.+++++|||+++||+.. ++.|..+|+...   +  +... .....|.++++++|
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~---~--~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATG---K--VVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSS---S--EEEEEE-SSEEEEEEE--T
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcc---c--EEEEEecCCCcceEEEcCC
Confidence            7899999998776544443 4444678999999999999975 689999998642   1  2221 13446999999999


Q ss_pred             CC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC---CCCcccceeE
Q 047259          115 GS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP---NATYISFVTS  189 (225)
Q Consensus       115 G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p---~g~~~~~~t~  189 (225)
                      |+ +|+++..                                    .+.|..+|.+ .+++..+...   ....-+..+.
T Consensus        89 G~~~~v~n~~------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a  132 (369)
T PF02239_consen   89 GKYVYVANYE------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA  132 (369)
T ss_dssp             TTEEEEEEEE------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred             CCEEEEEecC------------------------------------CCceeEeccccccceeecccccccccccCCCcee
Confidence            98 6667666                                    5678889865 6777777542   1111223444


Q ss_pred             EEE-eCCEEEEee-CCCCeEEEEeCCCc
Q 047259          190 AVE-FEDNLYMAS-IQSKFVGKLPLNTP  215 (225)
Q Consensus       190 ~~~-~~~~Lyv~~-~~~~~i~~~~~~~~  215 (225)
                      +.. ..+..|+.+ ...++|+.++....
T Consensus       133 Iv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen  133 IVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             EEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            443 344444444 44688888876553

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.37  E-value=8.5e-05  Score=64.50  Aligned_cols=80  Identities=20%  Similarity=0.157  Sum_probs=60.5

Q ss_pred             CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--------CccccceeEEecCCCE
Q 047259            1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--------GFYFANGVALSKDENF   71 (225)
Q Consensus         1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------~~~~pnGi~~~~dg~~   71 (225)
                      .|+++ +.+|| .||++++.  |.+      ...+.....|-.+|..+.+...-+.        ....|+..+++|||++
T Consensus        48 ~P~~~-~spDg~~lyva~~~--~~R------~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~  118 (352)
T TIGR02658        48 LPNPV-VASDGSFFAHASTV--YSR------IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT  118 (352)
T ss_pred             CCcee-ECCCCCEEEEEecc--ccc------cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE
Confidence            47875 99998 59999985  222      1234557889999998776553322        2457789999999999


Q ss_pred             EEEEeCC-CCEEEEEEecC
Q 047259           72 VVVCESW-KFRCRRYWLKG   89 (225)
Q Consensus        72 Lyv~~~~-~~~I~~~~~~~   89 (225)
                      |||++.. .+.|..+|+..
T Consensus       119 l~V~n~~p~~~V~VvD~~~  137 (352)
T TIGR02658       119 LLFYQFSPSPAVGVVDLEG  137 (352)
T ss_pred             EEEecCCCCCEEEEEECCC
Confidence            9999866 89999999864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.37  E-value=1.5e-05  Score=77.13  Aligned_cols=153  Identities=16%  Similarity=0.196  Sum_probs=99.0

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-------------------e-cCcccc
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-------------------H-EGFYFA   60 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-------------------~-~~~~~p   60 (225)
                      ||-+++++++|.+||.|..                   +|=.+|.. |.++.+                   . =.+.||
T Consensus       476 ~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWP  535 (1899)
T KOG4659|consen  476 FPKGIAFDKMGNLYFADGT-------------------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWP  535 (1899)
T ss_pred             cCCceeEccCCcEEEeccc-------------------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecc
Confidence            7999999999999999986                   22222221 222111                   1 136799


Q ss_pred             ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-----cCC---------------CCCCceEECCCCCEEEE
Q 047259           61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-----HLP---------------GGPDNINLAPDGSFWVA  120 (225)
Q Consensus        61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-----~~~---------------g~Pd~i~~d~~G~l~v~  120 (225)
                      ..++++|=.+.|||-|.  +-|+++++..    .+++..+     .++               -.+..|++..+|.|||+
T Consensus       536 T~LaV~Pmdnsl~Vld~--nvvlrit~~~----rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyva  609 (1899)
T KOG4659|consen  536 TSLAVDPMDNSLLVLDT--NVVLRITVVH----RVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVA  609 (1899)
T ss_pred             cceeecCCCCeEEEeec--ceEEEEccCc----cEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEE
Confidence            99999996677999986  6888887653    2222221     011               14789999999999999


Q ss_pred             eecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC----CC----------------
Q 047259          121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND----PN----------------  180 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~----p~----------------  180 (225)
                      +...+-                                 -.+|..+..+|++ ..+..    ++                
T Consensus       610 EsD~rr---------------------------------iNrvr~~~tdg~i-~ilaGa~S~C~C~~~~~cdcfs~~~~~  655 (1899)
T KOG4659|consen  610 ESDGRR---------------------------------INRVRKLSTDGTI-SILAGAKSPCSCDVAACCDCFSLRDVA  655 (1899)
T ss_pred             eccchh---------------------------------hhheEEeccCceE-EEecCCCCCCCcccccCCccccccchh
Confidence            998531                                 2244555555532 23321    00                


Q ss_pred             --CCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 047259          181 --ATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       181 --g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                        ...++.++.++. .+|.+|+++.++-+|..+...
T Consensus       656 At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~  691 (1899)
T KOG4659|consen  656 ATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSAR  691 (1899)
T ss_pred             hhccccCCcceEEECCCCcEEEecCCchhhhhhhhc
Confidence              012566676665 589999999999988776543

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.30  E-value=7.7e-06  Score=78.96  Aligned_cols=197  Identities=14%  Similarity=0.152  Sum_probs=113.4

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEeC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL----HEGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      |-.++..+||++|+.|-.                   .|=|+-++ |.++.+    ....++-.-||+||=...|||++.
T Consensus       367 Pvala~a~DGSl~VGDfN-------------------yIRRI~~d-g~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp  426 (1899)
T KOG4659|consen  367 PVALAYAPDGSLIVGDFN-------------------YIRRISQD-GQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDP  426 (1899)
T ss_pred             eeeEEEcCCCcEEEccch-------------------heeeecCC-CceEEEEEecCCCccceeEEEecCcCceEEecCC
Confidence            456889999999999876                   23344343 333322    234566778999995557999999


Q ss_pred             CCCEEEEEEe-cC-CCCCceeEEecc----CC----------------CCCCceEECCCCCEEEEeecCC-----chhh-
Q 047259           78 WKFRCRRYWL-KG-PRQGRLESFIEH----LP----------------GGPDNINLAPDGSFWVALIKMN-----QTGV-  129 (225)
Q Consensus        78 ~~~~I~~~~~-~~-~~~~~~~~~~~~----~~----------------g~Pd~i~~d~~G~l~v~~~~~~-----~~~~-  129 (225)
                      ...+|||+.- .+ ....+.++.++.    +|                -+|.||++|.+|.||+++...-     +..+ 
T Consensus       427 ~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIs  506 (1899)
T KOG4659|consen  427 LSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIIS  506 (1899)
T ss_pred             CcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEE
Confidence            9999999863 22 123445555531    11                1599999999999999987621     1111 


Q ss_pred             hhhhcChh------------HHHHHHhhhhhhh--hhcc---CCCCcceEEEEECCCCcEEEEEECCCCCcc--------
Q 047259          130 RAIQSCPD------------KWKLLQAYPELIN--LLIP---LGNDAGARIVKVDTHGKIIMDFNDPNATYI--------  184 (225)
Q Consensus       130 ~~~~~~~~------------~r~~~~~~p~~~~--~~~~---~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~--------  184 (225)
                      ..+...+.            +-.+-..+|-.++  |+-+   ..+  ...|+++++++++.-....|.-..+        
T Consensus       507 tlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s  584 (1899)
T KOG4659|consen  507 TLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSAS  584 (1899)
T ss_pred             EeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhh
Confidence            11111111            1111222333322  2111   122  5678888888888633322221111        


Q ss_pred             ---------cceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccccC
Q 047259          185 ---------SFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELA  220 (225)
Q Consensus       185 ---------~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~  220 (225)
                               ..-..++-..|.|||++..+.+|-++..-+.+-++.
T Consensus       585 kla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~  629 (1899)
T KOG4659|consen  585 KLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTIS  629 (1899)
T ss_pred             hhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEE
Confidence                     111122335799999999888777765555444443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.29  E-value=3.6e-06  Score=72.46  Aligned_cols=131  Identities=14%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhhhhhh
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGVRAIQ  133 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~  133 (225)
                      ..|-||+++..++-|||||.-- -++.++++++.   .+...+...|    +.+++.++++|.+|.++...+.+.     
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~---a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~-----  185 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGL---AELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDR-----  185 (376)
T ss_pred             CCcceEEeccCCCeEEEEecce-eeEEECCCCCc---ceeccccccCeeeeecCceeEcCCCeEEEeccccccch-----
Confidence            5799999999997799999764 57788887642   2223322222    579999999999999999864321     


Q ss_pred             cChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEE----CCCCCcccceeEEEEeCCEEEEeeCCCCeEEE
Q 047259          134 SCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN----DPNATYISFVTSAVEFEDNLYMASIQSKFVGK  209 (225)
Q Consensus       134 ~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~----~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~  209 (225)
                           |+++..+      +. ..  +.|+++++|+.-|..+++-    .|+|-      .+..+++.+.+++...-+|.+
T Consensus       186 -----rd~~~a~------l~-g~--~~GRl~~YD~~tK~~~VLld~L~F~NGl------aLS~d~sfvl~~Et~~~ri~r  245 (376)
T KOG1520|consen  186 -----RDFVFAA------LE-GD--PTGRLFRYDPSTKVTKVLLDGLYFPNGL------ALSPDGSFVLVAETTTARIKR  245 (376)
T ss_pred             -----hheEEee------ec-CC--CccceEEecCcccchhhhhhcccccccc------cCCCCCCEEEEEeeccceeee
Confidence                 2221111      11 12  3899999999887766654    44442      234678999999999999999


Q ss_pred             EeCCCccc
Q 047259          210 LPLNTPEA  217 (225)
Q Consensus       210 ~~~~~~~~  217 (225)
                      +-+.++-+
T Consensus       246 ywi~g~k~  253 (376)
T KOG1520|consen  246 YWIKGPKA  253 (376)
T ss_pred             eEecCCcc
Confidence            99988776

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.25  E-value=6.6e-05  Score=64.28  Aligned_cols=152  Identities=14%  Similarity=0.103  Sum_probs=98.0

Q ss_pred             CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---------CCE
Q 047259           11 GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW---------KFR   81 (225)
Q Consensus        11 G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---------~~~   81 (225)
                      -++|+.|..-.            + ..++++.+|.+++++.=+++....+| ++++||++.+|++++.         +.-
T Consensus         3 ~rvyV~D~~~~------------~-~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPVFF------------H-MTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-GGG------------G-SSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCccc------------c-ccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            37899988511            1 25799999999888776666666666 7799999999999863         234


Q ss_pred             EEEEEecCCCCCceeEEeccC-----CCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           82 CRRYWLKGPRQGRLESFIEHL-----PGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~-----~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      |..||.++- ....++.+...     ...+..+++..||+ +||.++.+                               
T Consensus        69 v~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-------------------------------  116 (342)
T PF06433_consen   69 VEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-------------------------------  116 (342)
T ss_dssp             EEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS-------------------------------
T ss_pred             EEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCC-------------------------------
Confidence            555665541 11122222211     12467889999987 67777663                               


Q ss_pred             CCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCccccc
Q 047259          156 GNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPEAEL  219 (225)
Q Consensus       156 ~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~~~~  219 (225)
                          ...|.++|.+ ++++..+..|..-      .+.+. +.. +.+-.+.+.+..+.++...++.
T Consensus       117 ----a~SVtVVDl~~~kvv~ei~~PGC~------~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  117 ----ATSVTVVDLAAKKVVGEIDTPGCW------LIYPSGNRG-FSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             ----SEEEEEEETTTTEEEEEEEGTSEE------EEEEEETTE-EEEEETTSCEEEEEETSTSSEE
T ss_pred             ----CCeEEEEECCCCceeeeecCCCEE------EEEecCCCc-eEEEecCCceEEEEECCCCCEe
Confidence                5688999986 6888899987532      12232 333 4466678888888888776664

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00023  Score=63.68  Aligned_cols=140  Identities=12%  Similarity=0.024  Sum_probs=80.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|..+++.+.+..........+|+|||+.|+++...  ...|+.++++++   ..+.+. ..++......+++|
T Consensus       225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~Lt-~~~~~~~~~~~spD  300 (435)
T PRK05137        225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG---TTTRLT-DSPAIDTSPSYSPD  300 (435)
T ss_pred             CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC---ceEEcc-CCCCccCceeEcCC
Confidence            568999998877776654333344578999999988766543  456999988753   333332 22333446788899


Q ss_pred             CC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |+ |+++....                                  ....|.++|.+|.....+....+. ...+ ...++
T Consensus       301 G~~i~f~s~~~----------------------------------g~~~Iy~~d~~g~~~~~lt~~~~~-~~~~-~~Spd  344 (435)
T PRK05137        301 GSQIVFESDRS----------------------------------GSPQLYVMNADGSNPRRISFGGGR-YSTP-VWSPR  344 (435)
T ss_pred             CCEEEEEECCC----------------------------------CCCeEEEEECCCCCeEEeecCCCc-ccCe-EECCC
Confidence            87 43332110                                  034677777776544444432222 1111 12345


Q ss_pred             CCEEEEeeCCC--CeEEEEeCCCcc
Q 047259          194 EDNLYMASIQS--KFVGKLPLNTPE  216 (225)
Q Consensus       194 ~~~Lyv~~~~~--~~i~~~~~~~~~  216 (225)
                      ++.|+++....  .+|.++++++..
T Consensus       345 G~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        345 GDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCc
Confidence            66776665433  367777765543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.0002  Score=64.35  Aligned_cols=140  Identities=11%  Similarity=0.004  Sum_probs=79.8

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|..+++.+.+..........+|+|||+.|+++...  ...|+.++++++   ..+.+.. ........++.+|
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg---~~~~lt~-~~~~~~~p~wSpD  316 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK---ALTRITR-HRAIDTEPSWHPD  316 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC---CeEECcc-CCCCccceEECCC
Confidence            457999998777766654333333468999999988776433  346999988753   3333222 2233456788999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |+..+......                                 ....|+++|.+ |+. ..+.. .+.....+ ...++
T Consensus       317 G~~I~f~s~~~---------------------------------g~~~Iy~~dl~~g~~-~~Lt~-~g~~~~~~-~~SpD  360 (448)
T PRK04792        317 GKSLIFTSERG---------------------------------GKPQIYRVNLASGKV-SRLTF-EGEQNLGG-SITPD  360 (448)
T ss_pred             CCEEEEEECCC---------------------------------CCceEEEEECCCCCE-EEEec-CCCCCcCe-eECCC
Confidence            87433322210                                 03467888876 444 33332 12111111 22345


Q ss_pred             CCEEEEeeCCCC--eEEEEeCCCcc
Q 047259          194 EDNLYMASIQSK--FVGKLPLNTPE  216 (225)
Q Consensus       194 ~~~Lyv~~~~~~--~i~~~~~~~~~  216 (225)
                      ++.||+++...+  .|+++++++..
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCC
Confidence            677777755433  67777776554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.00013  Score=60.39  Aligned_cols=187  Identities=16%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             CcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .+++.+++. +||.....                 .+.|+.++.+ |++...  ..+..-+.||++..++. +.+++-..
T Consensus        25 SGLTy~pd~~tLfaV~d~-----------------~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~   85 (248)
T PF06977_consen   25 SGLTYNPDTGTLFAVQDE-----------------PGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERD   85 (248)
T ss_dssp             EEEEEETTTTEEEEEETT-----------------TTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTT
T ss_pred             cccEEcCCCCeEEEEECC-----------------CCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCC
Confidence            478899874 56666554                 5789999986 654332  35667799999998874 77777778


Q ss_pred             CEEEEEEecCC--CCCce--eEEeccCC--C--CCCceEECCC-CCEEEEeecCCchhhhhhh--cC--------hhHH-
Q 047259           80 FRCRRYWLKGP--RQGRL--ESFIEHLP--G--GPDNINLAPD-GSFWVALIKMNQTGVRAIQ--SC--------PDKW-  139 (225)
Q Consensus        80 ~~I~~~~~~~~--~~~~~--~~~~~~~~--g--~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~--~~--------~~~r-  139 (225)
                      ++|+.++++..  .....  +.+.-..+  +  .-.|+++|+. ++||++.-.....++++-.  ..        ..+. 
T Consensus        86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~  165 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD  165 (248)
T ss_dssp             TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred             CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence            99999998532  11111  11110111  1  2478999997 5688775332111222111  00        0111 


Q ss_pred             -HHHHhhhhhhh-------hhccCCCCcceEEEEECCCCcEEEEEECCCC-----CcccceeEEEE-eCCEEEEeeCCCC
Q 047259          140 -KLLQAYPELIN-------LLIPLGNDAGARIVKVDTHGKIIMDFNDPNA-----TYISFVTSAVE-FEDNLYMASIQSK  205 (225)
Q Consensus       140 -~~~~~~p~~~~-------~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g-----~~~~~~t~~~~-~~~~Lyv~~~~~~  205 (225)
                       +.....|+.+.       ++.-...  ..+++++|.+|+++..+....|     +.++.+=+++. .+|+|||++= -+
T Consensus       166 ~~~~~~d~S~l~~~p~t~~lliLS~e--s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pN  242 (248)
T PF06977_consen  166 DKLFVRDLSGLSYDPRTGHLLILSDE--SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PN  242 (248)
T ss_dssp             HT--SS---EEEEETTTTEEEEEETT--TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TT
T ss_pred             ccceeccccceEEcCCCCeEEEEECC--CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-Cc
Confidence             11111222221       1111232  6689999999999999987654     23556667765 4799999984 56


Q ss_pred             eEEEEe
Q 047259          206 FVGKLP  211 (225)
Q Consensus       206 ~i~~~~  211 (225)
                      ..++|.
T Consensus       243 lfy~f~  248 (248)
T PF06977_consen  243 LFYRFE  248 (248)
T ss_dssp             EEEEEE
T ss_pred             eEEEeC
Confidence            777763

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.00029  Score=62.98  Aligned_cols=79  Identities=14%  Similarity=0.039  Sum_probs=52.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|.++++.+.+...........|+|||+.|+++..  +...|+++++++.   ..+.+.. ..+.-....+.++
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~---~~~~lt~-~~~~~~~~~~Spd  344 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS---NPRRISF-GGGRYSTPVWSPR  344 (435)
T ss_pred             CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC---CeEEeec-CCCcccCeEECCC
Confidence            45799999887887777655555667899999998866543  3458999988753   2333321 1222345778899


Q ss_pred             CCEEE
Q 047259          115 GSFWV  119 (225)
Q Consensus       115 G~l~v  119 (225)
                      |+..+
T Consensus       345 G~~ia  349 (435)
T PRK05137        345 GDLIA  349 (435)
T ss_pred             CCEEE
Confidence            87443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.20  E-value=0.00034  Score=62.93  Aligned_cols=79  Identities=11%  Similarity=0.041  Sum_probs=52.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|.++++.+.+.........++|+|||++|+++..  +...|++++++++   ..+.+.. ........++.+|
T Consensus       285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~-~g~~~~~~~~SpD  360 (448)
T PRK04792        285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTF-EGEQNLGGSITPD  360 (448)
T ss_pred             CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEec-CCCCCcCeeECCC
Confidence            45799999887887777655555677899999998876653  3457888888653   2322221 1122335688999


Q ss_pred             CCEEE
Q 047259          115 GSFWV  119 (225)
Q Consensus       115 G~l~v  119 (225)
                      |+..+
T Consensus       361 G~~l~  365 (448)
T PRK04792        361 GRSMI  365 (448)
T ss_pred             CCEEE
Confidence            97433

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.16  E-value=3.5e-06  Score=45.59  Aligned_cols=28  Identities=32%  Similarity=0.613  Sum_probs=25.0

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEE
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRY   85 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~   85 (225)
                      +..|.||+++++|+ |||+|+++++|++|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            35799999998876 99999999999886

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.16  E-value=5.6e-05  Score=65.32  Aligned_cols=80  Identities=18%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC-------------eEEEEecCccccceeEEecCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE-------------ETTVLHEGFYFANGVALSKDE   69 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~pnGi~~~~dg   69 (225)
                      ..|++++||.||++.....  -....++  .....|.|++++.+..             ..++.+.++..|.|++|+|..
T Consensus       117 ~~l~fgpDG~LYvs~G~~~--~~~~~~~--~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~t  192 (331)
T PF07995_consen  117 GGLAFGPDGKLYVSVGDGG--NDDNAQD--PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNT  192 (331)
T ss_dssp             EEEEE-TTSEEEEEEB-TT--TGGGGCS--TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTT
T ss_pred             ccccCCCCCcEEEEeCCCC--Ccccccc--cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCC
Confidence            4689999999999977521  1111111  1345899999998632             245677899999999999993


Q ss_pred             CEEEEEeCCCC---EEEEEE
Q 047259           70 NFVVVCESWKF---RCRRYW   86 (225)
Q Consensus        70 ~~Lyv~~~~~~---~I~~~~   86 (225)
                      ..||++|.+..   .|.++.
T Consensus       193 g~l~~~d~G~~~~dein~i~  212 (331)
T PF07995_consen  193 GRLWAADNGPDGWDEINRIE  212 (331)
T ss_dssp             TEEEEEEE-SSSSEEEEEE-
T ss_pred             CcEEEEccCCCCCcEEEEec
Confidence            45999997654   555554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.09  E-value=0.00084  Score=60.06  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=53.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEE-EEeC-CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVV-VCES-WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Ly-v~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+||.+|.++++.+.+...........|+|||+.|+ +++. +..+|++++++++   ..+.+.. ..+.....++.+|
T Consensus       266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt~-~~~~~~~~~~SpD  341 (429)
T PRK03629        266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRITW-EGSQNQDADVSSD  341 (429)
T ss_pred             CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEeec-CCCCccCEEECCC
Confidence            3469999998888887766655667899999999774 4443 2348888888753   2333321 2223456788999


Q ss_pred             CCEEEE
Q 047259          115 GSFWVA  120 (225)
Q Consensus       115 G~l~v~  120 (225)
                      |+..+.
T Consensus       342 G~~Ia~  347 (429)
T PRK03629        342 GKFMVM  347 (429)
T ss_pred             CCEEEE
Confidence            975443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.09  E-value=0.00082  Score=60.03  Aligned_cols=77  Identities=17%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|..+++.+.+.........++|+|||+.|+++..  +...|+.++.++.   ..+.+.. ..+......+.+|
T Consensus       219 ~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~wSpD  294 (427)
T PRK02889        219 KPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---GLRRLTQ-SSGIDTEPFFSPD  294 (427)
T ss_pred             CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC---CcEECCC-CCCCCcCeEEcCC
Confidence            45799999887777666433334457899999998876543  3457888887653   2333322 2233345789999


Q ss_pred             CCE
Q 047259          115 GSF  117 (225)
Q Consensus       115 G~l  117 (225)
                      |+.
T Consensus       295 G~~  297 (427)
T PRK02889        295 GRS  297 (427)
T ss_pred             CCE
Confidence            973

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00093  Score=59.63  Aligned_cols=81  Identities=16%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|..+|+.+.+...........|+|||+.|.++..  ++..|+.++++++   ..+.+.. .++.-....+.+|
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g---~~~~LT~-~~~~d~~p~~SPD  287 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK---TLTQITN-YPGIDVNGNFVED  287 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC---cEEEccc-CCCccCccEECCC
Confidence            45899999988888887653333334789999998876654  3468999998753   3333322 2222224578888


Q ss_pred             CC-EEEEe
Q 047259          115 GS-FWVAL  121 (225)
Q Consensus       115 G~-l~v~~  121 (225)
                      |+ |+++.
T Consensus       288 G~~I~F~S  295 (419)
T PRK04043        288 DKRIVFVS  295 (419)
T ss_pred             CCEEEEEE
Confidence            85 55554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.0011  Score=59.12  Aligned_cols=80  Identities=11%  Similarity=0.020  Sum_probs=51.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.++.++++.+.+..........+|+|||+.|+++...  ...|+.++++++   ..+.+.. ..+......+.+|
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~~spD  297 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR---QLSRVTN-HPAIDTEPFWGKD  297 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEccc-CCCCcCCeEECCC
Confidence            457999998877776664333334468999999988765543  348999998753   2333322 2233445678888


Q ss_pred             CC-EEEE
Q 047259          115 GS-FWVA  120 (225)
Q Consensus       115 G~-l~v~  120 (225)
                      |+ |+++
T Consensus       298 g~~i~f~  304 (430)
T PRK00178        298 GRTLYFT  304 (430)
T ss_pred             CCEEEEE
Confidence            87 4444

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.06  E-value=1.7e-05  Score=55.16  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             CceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCccc
Q 047259          107 DNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYIS  185 (225)
Q Consensus       107 d~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~  185 (225)
                      |+++++++ |.+|+++...+....      .++..++.           ..+  .|+++++||..+.+.++.+  |  +.
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~------~~~~~~le-----------~~~--~GRll~ydp~t~~~~vl~~--~--L~   57 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRR------DWVYDLLE-----------GRP--TGRLLRYDPSTKETTVLLD--G--LY   57 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TT------GHHHHHHH-----------T-----EEEEEEETTTTEEEEEEE--E--ES
T ss_pred             CceeEecCCCEEEEEeCccccCcc------ceeeeeec-----------CCC--CcCEEEEECCCCeEEEehh--C--CC
Confidence            57899998 999999998653221      12222222           122  8999999999877666664  2  34


Q ss_pred             ceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          186 FVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       186 ~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .+++++.  ++..|+|++....+|.|+.+.++
T Consensus        58 fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp   89 (89)
T PF03088_consen   58 FPNGVALSPDESFVLVAETGRYRILRYWLKGP   89 (89)
T ss_dssp             SEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred             ccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence            4566654  46789999999999999998764

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.05  E-value=0.00093  Score=59.76  Aligned_cols=78  Identities=10%  Similarity=-0.037  Sum_probs=50.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...|+.++..+|+.+.+.........++|+|||+.|+++...  ...|+.++++++   ..+.+.. ........++.+|
T Consensus       222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg---~~~~lt~-~~~~~~~~~wSPD  297 (429)
T PRK03629        222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---QIRQVTD-GRSNNTEPTWFPD  297 (429)
T ss_pred             CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEccC-CCCCcCceEECCC
Confidence            457888888777766665433334568999999989876443  347999998753   3333322 2223457788999


Q ss_pred             CCEE
Q 047259          115 GSFW  118 (225)
Q Consensus       115 G~l~  118 (225)
                      |+..
T Consensus       298 G~~I  301 (429)
T PRK03629        298 SQNL  301 (429)
T ss_pred             CCEE
Confidence            9743

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.04  E-value=9e-05  Score=69.16  Aligned_cols=127  Identities=13%  Similarity=0.117  Sum_probs=90.9

Q ss_pred             EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhh
Q 047259           53 LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRA  131 (225)
Q Consensus        53 ~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~  131 (225)
                      +-.++..|.|||++--++-+|++|+...+|-.-.++|.   ..+++....--.|.+|++|+ .|+||.+++...      
T Consensus      1063 ~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~---~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe------ 1133 (1289)
T KOG1214|consen 1063 VNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGS---ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE------ 1133 (1289)
T ss_pred             ecccCCCccceeeeeccceeeeeccccchhheeecCCc---eeeEEEeecccCcceEEeecccCceeecccccc------
Confidence            34678899999999999999999999999988888873   33344332334699999998 689999998821      


Q ss_pred             hhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEE
Q 047259          132 IQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGK  209 (225)
Q Consensus       132 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~  209 (225)
                                                  ...|.+.+.||+-.+++-.-+   +..+.+++  +....|-..+.+.+++--
T Consensus      1134 ----------------------------nPkIets~mDG~NrRilin~D---igLPNGLtfdpfs~~LCWvDAGt~rleC 1182 (1289)
T KOG1214|consen 1134 ----------------------------NPKIETSSMDGENRRILINTD---IGLPNGLTFDPFSKLLCWVDAGTKRLEC 1182 (1289)
T ss_pred             ----------------------------CCcceeeccCCccceEEeecc---cCCCCCceeCcccceeeEEecCCcceeE
Confidence                                        557899999998766654311   22233333  345677777888888877


Q ss_pred             EeCCCccccc
Q 047259          210 LPLNTPEAEL  219 (225)
Q Consensus       210 ~~~~~~~~~~  219 (225)
                      +..++...+.
T Consensus      1183 ~~p~g~gRR~ 1192 (1289)
T KOG1214|consen 1183 TLPDGTGRRV 1192 (1289)
T ss_pred             ecCCCCcchh
Confidence            7776665544

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.01  E-value=0.00036  Score=59.09  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=74.7

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +.|+++....---|+|--+..--...|-    +....|-+. +|..++  +++++++.+|.+..|.. | .||+++++.+
T Consensus       153 HLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-idv~s~--evl~~GLsmPhSPRWhd-g-rLwvldsgtG  223 (335)
T TIGR03032       153 HLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-IDIPSG--EVVASGLSMPHSPRWYQ-G-KLWLLNSGRG  223 (335)
T ss_pred             eecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-EEeCCC--CEEEcCccCCcCCcEeC-C-eEEEEECCCC
Confidence            4689999643347878554211112221    122344332 455444  57789999999999985 3 4999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE-EEEeecCC
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF-WVALIKMN  125 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l-~v~~~~~~  125 (225)
                      +|.++++++   |..++.+ ..||+|.|+++.  |++ +|+....|
T Consensus       224 ev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R  263 (335)
T TIGR03032       224 ELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR  263 (335)
T ss_pred             EEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence            999999863   3566665 589999999999  765 55555555

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.001  Score=59.47  Aligned_cols=79  Identities=14%  Similarity=0.016  Sum_probs=50.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...|+.+|..+++.+.+.........++|+|||+.|+++.+  +...|+.++++++   ..+.+.. ..+.....++++|
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g---~~~~lt~-~~~~~~~~~~spD  302 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR---QLTRLTN-HFGIDTEPTWAPD  302 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC---CeEECcc-CCCCccceEECCC
Confidence            45789999877776665433233347899999998876644  3447999998753   3333221 2223346789999


Q ss_pred             CCEEE
Q 047259          115 GSFWV  119 (225)
Q Consensus       115 G~l~v  119 (225)
                      |+..+
T Consensus       303 G~~l~  307 (433)
T PRK04922        303 GKSIY  307 (433)
T ss_pred             CCEEE
Confidence            97433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.0011  Score=59.30  Aligned_cols=78  Identities=14%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|..+++++.+.........++|+|||+.|+++...  ...|+.++++++   ..+.+. .........++.++
T Consensus       271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt-~~g~~~~~~~~SpD  346 (433)
T PRK04922        271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLT-FQGNYNARASVSPD  346 (433)
T ss_pred             CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEee-cCCCCccCEEECCC
Confidence            457999998878877765544445678999999988666432  346888887653   232222 11223446889999


Q ss_pred             CCEE
Q 047259          115 GSFW  118 (225)
Q Consensus       115 G~l~  118 (225)
                      |+..
T Consensus       347 G~~I  350 (433)
T PRK04922        347 GKKI  350 (433)
T ss_pred             CCEE
Confidence            9743

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.97  E-value=0.0015  Score=55.32  Aligned_cols=104  Identities=17%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             EEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeCCC-
Q 047259            5 VIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV---LHEGFYFANGVALSKDENFVVVCESWK-   79 (225)
Q Consensus         5 v~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~dg~~Lyv~~~~~-   79 (225)
                      -++++||+ ||.|+..  +           +...|.|-.||.. ...+.   ..+..-.|.-|.+.|||+.|.|++-+- 
T Consensus        56 g~fs~dG~~LytTEnd--~-----------~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~  121 (305)
T PF07433_consen   56 GVFSPDGRLLYTTEND--Y-----------ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE  121 (305)
T ss_pred             EEEcCCCCEEEEeccc--c-----------CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence            35678886 6666554  1           3468999999986 33333   345667899999999999899998431 


Q ss_pred             ----------------CEEEEEEecCCC-CCceeEEeccCC-CCCCceEECCCCCEEEEeec
Q 047259           80 ----------------FRCRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        80 ----------------~~I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~  123 (225)
                                      -.|..++...+. +++.+ +.+... -.-..++++++|.+|++...
T Consensus       122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQY  182 (305)
T ss_pred             cCcccCceecChhhcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEec
Confidence                            133333322111 11111 100001 12578999999999999876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.94  E-value=0.0022  Score=56.54  Aligned_cols=78  Identities=18%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...|+.+|..+++.+.+.........++|+|||+.|+++...  ...|+.+++.++   ..+.+.. ..+......+.++
T Consensus       213 ~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~---~~~~l~~-~~~~~~~~~~s~d  288 (417)
T TIGR02800       213 KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK---QLTRLTN-GPGIDTEPSWSPD  288 (417)
T ss_pred             CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC---CEEECCC-CCCCCCCEEECCC
Confidence            357899998777666554433344568999999988876543  347999988653   2222221 2222335677888


Q ss_pred             CCEE
Q 047259          115 GSFW  118 (225)
Q Consensus       115 G~l~  118 (225)
                      |+..
T Consensus       289 g~~l  292 (417)
T TIGR02800       289 GKSI  292 (417)
T ss_pred             CCEE
Confidence            8743

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.92  E-value=0.00031  Score=58.26  Aligned_cols=139  Identities=13%  Similarity=0.125  Sum_probs=78.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCC-CCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~  114 (225)
                      .+..+.||.++-+...-.+-....-||+  .||+.||++|- +.+|+.+++++-. ....++-.+..| ..-+-+.+- +
T Consensus       109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~  184 (264)
T PF05096_consen  109 EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N  184 (264)
T ss_dssp             SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred             CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence            5677888876432222221122334555  66777999985 6799999987521 112222111111 123445554 6


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEEC--------CCCCc--
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFND--------PNATY--  183 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~--------p~g~~--  183 (225)
                      |.||.-.+.                                    ...|+++||. |+++..+..        .+...  
T Consensus       185 G~IyANVW~------------------------------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~  228 (264)
T PF05096_consen  185 GKIYANVWQ------------------------------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQP  228 (264)
T ss_dssp             TEEEEEETT------------------------------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--
T ss_pred             CEEEEEeCC------------------------------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccc
Confidence            889988877                                    4589999997 999988732        00110  


Q ss_pred             -ccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          184 -ISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       184 -~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                       ..-.++++.  ..++|||+.-.-+++..+++.++
T Consensus       229 ~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e~  263 (264)
T PF05096_consen  229 DDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVEK  263 (264)
T ss_dssp             TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE-
T ss_pred             cCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEec
Confidence             123455565  46999999999999999988654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.0032  Score=52.83  Aligned_cols=144  Identities=14%  Similarity=0.116  Sum_probs=92.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC--CCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP--GGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~--g~Pd~i~~d~~  114 (225)
                      ...|..||.+..+..-+. .+..+.=+|++|.|- ++.+..++..|..||+.--..+..++|.-..+  ....+|.+.++
T Consensus       121 D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d  198 (311)
T KOG1446|consen  121 DKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD  198 (311)
T ss_pred             CCeEEeeEecCCCCceEE-ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC
Confidence            556777776544443332 244567789999983 66666677799999987322455556542212  24679999999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECC-CCCcccceeEEEE
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDP-NATYISFVTSAVE  192 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p-~g~~~~~~t~~~~  192 (225)
                      |...+-...                                    .+.+..+|. +|.++..++.. +...++  -.++.
T Consensus       199 GK~iLlsT~------------------------------------~s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~f  240 (311)
T KOG1446|consen  199 GKSILLSTN------------------------------------ASFIYLLDAFDGTVKSTFSGYPNAGNLP--LSATF  240 (311)
T ss_pred             CCEEEEEeC------------------------------------CCcEEEEEccCCcEeeeEeeccCCCCcc--eeEEE
Confidence            985554444                                    345666775 79988888753 322233  33333


Q ss_pred             -eCCEEEEeeCCCCeEEEEeCCCcccccC
Q 047259          193 -FEDNLYMASIQSKFVGKLPLNTPEAELA  220 (225)
Q Consensus       193 -~~~~Lyv~~~~~~~i~~~~~~~~~~~~~  220 (225)
                       .++...++....++|.+..+.+..+-.+
T Consensus       241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence             5677778888888998888866554443

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.0016  Score=57.34  Aligned_cols=77  Identities=19%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEE--------EEEeCCCCeEEEEecCccccceeEEecCCCEEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQL--------LKYDPELEETTVLHEGFYFANGVALSKDENFVV   73 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v--------~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Ly   73 (225)
                      .-.|+++|||.||+|.-.... .. ..++.  ....|.+        +..|+.....++..-++..|.|++|+|..+.||
T Consensus       179 g~~l~f~pDG~Lyvs~G~~~~-~~-~aq~~--~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw  254 (399)
T COG2133         179 GGRLVFGPDGKLYVTTGSNGD-PA-LAQDN--VSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW  254 (399)
T ss_pred             cccEEECCCCcEEEEeCCCCC-cc-cccCc--cccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence            346899999999999766211 00 00000  0113434        444544344456677899999999999956699


Q ss_pred             EEeCCCCEE
Q 047259           74 VCESWKFRC   82 (225)
Q Consensus        74 v~~~~~~~I   82 (225)
                      +++-+...+
T Consensus       255 ~~e~g~d~~  263 (399)
T COG2133         255 TTEHGPDAL  263 (399)
T ss_pred             EEecCCCcc
Confidence            999887444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0018  Score=57.81  Aligned_cols=76  Identities=17%  Similarity=0.075  Sum_probs=47.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--EEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF--RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...|+.+|..+++.+.+......-..++|+|||+.|+++....+  .|+.+++++.   ..+.+.. ..+.....++.+|
T Consensus       227 ~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~wSpD  302 (429)
T PRK01742        227 KSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG---TPSQLTS-GAGNNTEPSWSPD  302 (429)
T ss_pred             CcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC---CeEeecc-CCCCcCCEEECCC
Confidence            45688888876765555432223346899999998877654333  6778887643   2333321 2233446788888


Q ss_pred             CC
Q 047259          115 GS  116 (225)
Q Consensus       115 G~  116 (225)
                      |+
T Consensus       303 G~  304 (429)
T PRK01742        303 GQ  304 (429)
T ss_pred             CC
Confidence            87

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0033  Score=56.01  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=50.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.+|.++++.+.+...........|+|||+.||++..  +...|++++++++   ..+.+.. .........++++
T Consensus       266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~~~~lt~-~~~~~~~~~~Spd  341 (430)
T PRK00178        266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---RAERVTF-VGNYNARPRLSAD  341 (430)
T ss_pred             CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEeec-CCCCccceEECCC
Confidence            45799999988887776655445567899999998866543  2457999887653   2322221 1122345678888


Q ss_pred             CCEE
Q 047259          115 GSFW  118 (225)
Q Consensus       115 G~l~  118 (225)
                      |+..
T Consensus       342 g~~i  345 (430)
T PRK00178        342 GKTL  345 (430)
T ss_pred             CCEE
Confidence            8743

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.83  E-value=6.8e-05  Score=44.13  Aligned_cols=38  Identities=24%  Similarity=0.102  Sum_probs=34.1

Q ss_pred             EEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           52 VLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        52 ~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ++..++..|+||++++.++.||++|...+.|.+++++|
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            34467889999999999999999999999999999876

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.83  E-value=0.0048  Score=54.41  Aligned_cols=82  Identities=13%  Similarity=0.067  Sum_probs=51.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...||.++..++..+.+...........|+|||+.|+++..  +...|+.+++++.   ..+.+.. ........+++++
T Consensus       257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~---~~~~l~~-~~~~~~~~~~spd  332 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG---EVRRLTF-RGGYNASPSWSPD  332 (417)
T ss_pred             CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEeec-CCCCccCeEECCC
Confidence            45789999877776666544333446789999998865543  3348999988653   2322221 2233457788999


Q ss_pred             CCEEEEee
Q 047259          115 GSFWVALI  122 (225)
Q Consensus       115 G~l~v~~~  122 (225)
                      |+.++...
T Consensus       333 g~~i~~~~  340 (417)
T TIGR02800       333 GDLIAFVH  340 (417)
T ss_pred             CCEEEEEE
Confidence            87544433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.82  E-value=0.0027  Score=56.70  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=81.8

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ....||.++.++++.+.+......-....|+|||+.||++..  +...|++++++++   ..+.+...  +. .+..+++
T Consensus       255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g---~~~rlt~~--g~-~~~~~SP  328 (419)
T PRK04043        255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG---SVEQVVFH--GK-NNSSVST  328 (419)
T ss_pred             CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC---CeEeCccC--CC-cCceECC
Confidence            357899999877877776544333345689999998877653  3348999998753   33222211  21 2358899


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      ||+..+-.......                           ........|..+|.++.....+... +. ...++ ..++
T Consensus       329 DG~~Ia~~~~~~~~---------------------------~~~~~~~~I~v~d~~~g~~~~LT~~-~~-~~~p~-~SPD  378 (419)
T PRK04043        329 YKNYIVYSSRETNN---------------------------EFGKNTFNLYLISTNSDYIRRLTAN-GV-NQFPR-FSSD  378 (419)
T ss_pred             CCCEEEEEEcCCCc---------------------------ccCCCCcEEEEEECCCCCeEECCCC-CC-cCCeE-ECCC
Confidence            99844333321100                           0000024677788764433444431 21 11122 2345


Q ss_pred             CCEEEEeeCC--CCeEEEEeCCCcccccCC
Q 047259          194 EDNLYMASIQ--SKFVGKLPLNTPEAELAP  221 (225)
Q Consensus       194 ~~~Lyv~~~~--~~~i~~~~~~~~~~~~~~  221 (225)
                      +..|+++...  ...+..+++++..++..|
T Consensus       379 G~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        379 GGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            5666555432  224777777776555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.77  E-value=0.00084  Score=61.90  Aligned_cols=88  Identities=13%  Similarity=0.071  Sum_probs=64.9

Q ss_pred             cEEEEEeCCC-----CeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC------CCCceeEEecc--CCC
Q 047259           38 GQLLKYDPEL-----EETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP------RQGRLESFIEH--LPG  104 (225)
Q Consensus        38 g~v~~~d~~~-----~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~~~~~~~~--~~g  104 (225)
                      ++|-.+|..+     .++...+.-...|.|++++|||+++|++.-.++.|..|+.+..      ++.........  +.-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            4688888765     2455556677899999999999999999999999999998641      11111111211  233


Q ss_pred             CCCceEECCCCCEEEEeecCC
Q 047259          105 GPDNINLAPDGSFWVALIKMN  125 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~~~  125 (225)
                      .|-..++|++|+.|++.+-.+
T Consensus       376 GPLHTaFDg~G~aytslf~ds  396 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLDS  396 (635)
T ss_pred             CcceEEECCCCCEEEeEeecc
Confidence            699999999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.72  E-value=0.0043  Score=49.78  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=53.5

Q ss_pred             CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .|.|..+|..+++...... .......++++|+++.++++.. .+.|..|++...  .....+. ........+++++++
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~--~~~~~~~-~~~~~i~~~~~~~~~  231 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG--KCLGTLR-GHENGVNSVAFSPDG  231 (289)
T ss_pred             CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCC--ceecchh-hcCCceEEEEEcCCC
Confidence            6678888876444333332 3346789999999987777765 788999988642  1111121 123346788999998


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      .++++...
T Consensus       232 ~~~~~~~~  239 (289)
T cd00200         232 YLLASGSE  239 (289)
T ss_pred             cEEEEEcC
Confidence            88877653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.70  E-value=0.0033  Score=53.28  Aligned_cols=82  Identities=15%  Similarity=0.060  Sum_probs=55.1

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-------cCccccceeEEecCC-----C
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-------EGFYFANGVALSKDE-----N   70 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-------~~~~~pnGi~~~~dg-----~   70 (225)
                      .++.+|++|+||+-|++.......     ....+.-+|+.+|..++++....       ...++-|.|+++...     .
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~-----~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~   78 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQP-----PKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG   78 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSST-----TGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCC-----CCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcce
Confidence            578999999999999983211000     00134568999999888754321       234567889999832     5


Q ss_pred             EEEEEeCCCCEEEEEEecC
Q 047259           71 FVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        71 ~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ++|++|.+...|..|++..
T Consensus        79 ~aYItD~~~~glIV~dl~~   97 (287)
T PF03022_consen   79 FAYITDSGGPGLIVYDLAT   97 (287)
T ss_dssp             EEEEEETTTCEEEEEETTT
T ss_pred             EEEEeCCCcCcEEEEEccC
Confidence            8999999999999999874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.68  E-value=0.01  Score=53.14  Aligned_cols=80  Identities=11%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEE--EEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRR--YWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~--~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      ...||.++.++|+.+.+...-......+|+|||+.|.++..  +...|+.  ++++.+..+..+.+.....+.....++.
T Consensus       210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS  289 (428)
T PRK01029        210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS  289 (428)
T ss_pred             CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence            56789999887777666543334456899999988866653  2335555  3444321233333332222233467889


Q ss_pred             CCCC
Q 047259          113 PDGS  116 (225)
Q Consensus       113 ~~G~  116 (225)
                      +||+
T Consensus       290 PDG~  293 (428)
T PRK01029        290 PDGT  293 (428)
T ss_pred             CCCC
Confidence            9997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.67  E-value=0.0051  Score=54.97  Aligned_cols=80  Identities=19%  Similarity=0.011  Sum_probs=49.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+|+.+|.+....+.+......-..++|+|||+.|+++..  ....|+.++++++   ....+. ..++.....++.+|
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l~-~~~g~~~~~~~SPD  250 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVVA-NFKGSNSAPAWSPD  250 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEee-cCCCCccceEECCC
Confidence            45788888763333444433334457899999998866543  2357999998753   333333 23444456788888


Q ss_pred             CC-EEEE
Q 047259          115 GS-FWVA  120 (225)
Q Consensus       115 G~-l~v~  120 (225)
                      |+ |+++
T Consensus       251 G~~la~~  257 (427)
T PRK02889        251 GRTLAVA  257 (427)
T ss_pred             CCEEEEE
Confidence            86 4433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.65  E-value=0.015  Score=46.56  Aligned_cols=150  Identities=19%  Similarity=0.178  Sum_probs=86.2

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccc-cceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF-ANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ..+.+.++|++.++-..                 .|.+..++..+++.......... ...+.+.++++.++++. ..+.
T Consensus        13 ~~~~~~~~~~~l~~~~~-----------------~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~   74 (289)
T cd00200          13 TCVAFSPDGKLLATGSG-----------------DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKT   74 (289)
T ss_pred             EEEEEcCCCCEEEEeec-----------------CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCe
Confidence            35667777765555432                 56777777655543333333333 35899999997555554 4789


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcce
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGA  161 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~  161 (225)
                      |..+++...  .....+. ........+.+.++++++++...                                    .+
T Consensus        75 i~i~~~~~~--~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~------------------------------------~~  115 (289)
T cd00200          75 IRLWDLETG--ECVRTLT-GHTSYVSSVAFSPDGRILSSSSR------------------------------------DK  115 (289)
T ss_pred             EEEEEcCcc--cceEEEe-ccCCcEEEEEEcCCCCEEEEecC------------------------------------CC
Confidence            999988642  1222232 12234567888888887777653                                    34


Q ss_pred             EEEEECCC-CcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCC
Q 047259          162 RIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       162 ~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      .|..++.. ++....+....+    .++.+... ++.++++....+.|..+++.
T Consensus       116 ~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200         116 TIKVWDVETGKCLTTLRGHTD----WVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             eEEEEECCCcEEEEEeccCCC----cEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence            55666654 555555542221    24444433 24454554456677777765

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.63  E-value=0.00065  Score=61.44  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=52.4

Q ss_pred             ccccceeEEecCCCEEEEEeCCCC----------------EEEEEEecCC----CCCceeEEecc----CCC--------
Q 047259           57 FYFANGVALSKDENFVVVCESWKF----------------RCRRYWLKGP----RQGRLESFIEH----LPG--------  104 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~----------------~I~~~~~~~~----~~~~~~~~~~~----~~g--------  104 (225)
                      +..|.+|++.|+...+|++.+++.                +|+||-+.+.    ....+++|+..    ...        
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            347999999999888999988654                7899887631    35567788742    111        


Q ss_pred             -----CCCceEECCCCCEEEEeecCC
Q 047259          105 -----GPDNINLAPDGSFWVALIKMN  125 (225)
Q Consensus       105 -----~Pd~i~~d~~G~l~v~~~~~~  125 (225)
                           .||||++|+.|+||++.-+..
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg~~  521 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDGSG  521 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecCCC
Confidence                 399999999999999987643

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.59  E-value=0.00098  Score=61.03  Aligned_cols=130  Identities=20%  Similarity=0.234  Sum_probs=75.8

Q ss_pred             CccccceeEEecCCCEEEEEeCCCC-------------------EEEEEEecCC----CCCceeEEecc-C---------
Q 047259           56 GFYFANGVALSKDENFVVVCESWKF-------------------RCRRYWLKGP----RQGRLESFIEH-L---------  102 (225)
Q Consensus        56 ~~~~pnGi~~~~dg~~Lyv~~~~~~-------------------~I~~~~~~~~----~~~~~~~~~~~-~---------  102 (225)
                      .+..|.||.++|....||++.+...                   +|+++.+++.    .....++|... .         
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            4557999999998888999987655                   8999998743    12234444421 1         


Q ss_pred             -------CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEE
Q 047259          103 -------PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIM  174 (225)
Q Consensus       103 -------~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~  174 (225)
                             -..||||++|++|+||++.=.......           ++...+.+..... ... ....+...++. |++..
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~-----------l~g~t~~G~~~~~-~~~-~G~~~~~~~~~~g~~~r  494 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNN-----------LPGVTPDGEVYDF-ARN-DGNNVWAYDPDTGELKR  494 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCCCCCCcc-----------cccccccCceeee-eec-ccceeeeccccccceee
Confidence                   125999999999999999755321100           0000111100000 000 01114445554 77777


Q ss_pred             EEECCCCCcccceeEEEE--eCCEEEEee
Q 047259          175 DFNDPNATYISFVTSAVE--FEDNLYMAS  201 (225)
Q Consensus       175 ~~~~p~g~~~~~~t~~~~--~~~~Lyv~~  201 (225)
                      .+..|.|.   .+|+.++  ++..|||.-
T Consensus       495 f~~~P~ga---E~tG~~fspDg~tlFvni  520 (524)
T PF05787_consen  495 FLVGPNGA---EITGPCFSPDGRTLFVNI  520 (524)
T ss_pred             eccCCCCc---ccccceECCCCCEEEEEE
Confidence            77778776   4455554  467888753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.54  E-value=0.014  Score=52.18  Aligned_cols=79  Identities=14%  Similarity=-0.026  Sum_probs=48.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+|+.+|.+......+......-..++|+|||+.|+++...  ...|+.+++.++   ..+.+. ..++.-..+++.+|
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l~-~~~g~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVVA-SFRGHNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEEe-cCCCccCceeECCC
Confidence            367888887644444444444455789999999988555432  357999988642   333333 23333346788888


Q ss_pred             CCEEE
Q 047259          115 GSFWV  119 (225)
Q Consensus       115 G~l~v  119 (225)
                      |+..+
T Consensus       259 G~~La  263 (429)
T PRK01742        259 GSRLA  263 (429)
T ss_pred             CCEEE
Confidence            87433

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.003  Score=55.59  Aligned_cols=127  Identities=13%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhh
Q 047259           54 HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGV  129 (225)
Q Consensus        54 ~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~  129 (225)
                      ++++..+.|+++..++  +|++.+.  .+.+|+....++....++...+|+    .-..|++++||.|||+.....+...
T Consensus       127 a~~~~~~~~~a~~~~~--~~~~n~~--~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~  202 (399)
T COG2133         127 AQGRLVYFGISEPGGG--LYVANRV--AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPAL  202 (399)
T ss_pred             cccceeeeEEEeecCC--ceEEEEE--EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCccc
Confidence            4667788999997653  7888653  667777221344444444444554    2467999999999999987522110


Q ss_pred             hhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCc----ccceeEEEEe--CCEEEEeeCC
Q 047259          130 RAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATY----ISFVTSAVEF--EDNLYMASIQ  203 (225)
Q Consensus       130 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~----~~~~t~~~~~--~~~Lyv~~~~  203 (225)
                         +.+          +        ..  ..++|++++.+|.+...-..++.++    ..++.+++.+  .+.||+++.+
T Consensus       203 ---aq~----------~--------~~--~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g  259 (399)
T COG2133         203 ---AQD----------N--------VS--LAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHG  259 (399)
T ss_pred             ---ccC----------c--------cc--cccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecC
Confidence               000          0        01  1455666665544322222211111    2344455543  5899999999


Q ss_pred             CCeE
Q 047259          204 SKFV  207 (225)
Q Consensus       204 ~~~i  207 (225)
                      .+.+
T Consensus       260 ~d~~  263 (399)
T COG2133         260 PDAL  263 (399)
T ss_pred             CCcc
Confidence            8776

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.44  E-value=0.019  Score=47.78  Aligned_cols=50  Identities=12%  Similarity=0.179  Sum_probs=32.2

Q ss_pred             eEEEEECC-CCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          161 ARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       161 ~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      +.+.-.|- +|+-+..+..     +..+..+++..++.|++-.-...|-+.++...
T Consensus       214 g~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  214 GEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             ceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence            34444333 3555555442     23456677888899999888888888877654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.41  E-value=0.019  Score=49.45  Aligned_cols=135  Identities=17%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             ccceeEEecCCCEEEEEeCCC------CEEEEEEecCCCCCceeEEecc-----------CCCCCCceEECCCCC-EEEE
Q 047259           59 FANGVALSKDENFVVVCESWK------FRCRRYWLKGPRQGRLESFIEH-----------LPGGPDNINLAPDGS-FWVA  120 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~~~------~~I~~~~~~~~~~~~~~~~~~~-----------~~g~Pd~i~~d~~G~-l~v~  120 (225)
                      -+.||++.++|. +||++...      .+|++|+.+|.......+-...           ......+|++.++|+ ||++
T Consensus        86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            567999977776 99999999      9999999885321211111100           012357899999998 8888


Q ss_pred             eecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--CcEEEEEECCCCC-----cccceeEEEE-
Q 047259          121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--GKIIMDFNDPNAT-----YISFVTSAVE-  192 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G~~~~~~~~p~g~-----~~~~~t~~~~-  192 (225)
                      .-.+..+       .+....          +  ...  ...+++++|+.  |+....+..+-..     .-..++.++. 
T Consensus       165 ~E~~l~~-------d~~~~~----------~--~~~--~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al  223 (326)
T PF13449_consen  165 MESPLKQ-------DGPRAN----------P--DNG--SPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL  223 (326)
T ss_pred             ECccccC-------CCcccc----------c--ccC--ceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE
Confidence            7663110       000000          0  001  13678889975  5444443322110     1235666654 


Q ss_pred             eCCEEEEeeCC-------CCeEEEEeCCCc
Q 047259          193 FEDNLYMASIQ-------SKFVGKLPLNTP  215 (225)
Q Consensus       193 ~~~~Lyv~~~~-------~~~i~~~~~~~~  215 (225)
                      .+++|+|=+=.       ..+|.++++...
T Consensus       224 ~d~~lLvLER~~~~~~~~~~ri~~v~l~~a  253 (326)
T PF13449_consen  224 PDGRLLVLERDFSPGTGNYKRIYRVDLSDA  253 (326)
T ss_pred             CCCcEEEEEccCCCCccceEEEEEEEcccc
Confidence            57778887643       456666666544

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.39  E-value=0.0025  Score=58.39  Aligned_cols=117  Identities=21%  Similarity=0.354  Sum_probs=69.3

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchh---hhhcccCCCCcEEEEEeCCCC-------eEEEEec---------------
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEY---YKDLVEGKPHGQLLKYDPELE-------ETTVLHE---------------   55 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~---~~~~~~~~~~g~v~~~d~~~~-------~~~~~~~---------------   55 (225)
                      |+++.+.+ +|.+||+.+... .+...   ..........|.||+++...+       +++.++.               
T Consensus       352 pEgi~~~p~~g~vY~a~T~~~-~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~  430 (524)
T PF05787_consen  352 PEGITVNPDDGEVYFALTNNS-GRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKC  430 (524)
T ss_pred             ccCeeEeCCCCEEEEEEecCC-CCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcc
Confidence            78999988 579999987632 11000   011223567899999998755       4555332               


Q ss_pred             ---CccccceeEEecCCCEEEEEeCCCCE------------EEEEEe--------cCCCCCceeEEecc-CCCCCCceEE
Q 047259           56 ---GFYFANGVALSKDENFVVVCESWKFR------------CRRYWL--------KGPRQGRLESFIEH-LPGGPDNINL  111 (225)
Q Consensus        56 ---~~~~pnGi~~~~dg~~Lyv~~~~~~~------------I~~~~~--------~~~~~~~~~~~~~~-~~g~Pd~i~~  111 (225)
                         .+..|.+|+++++|+ |||++-..+.            ++.+..        .+...+....|... .....-|+++
T Consensus       431 ~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~f  509 (524)
T PF05787_consen  431 DDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCF  509 (524)
T ss_pred             cCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceE
Confidence               256899999999998 7777643332            222211        11123344444421 1124578999


Q ss_pred             CCCCC-EEEE
Q 047259          112 APDGS-FWVA  120 (225)
Q Consensus       112 d~~G~-l~v~  120 (225)
                      ++||+ |||.
T Consensus       510 spDg~tlFvn  519 (524)
T PF05787_consen  510 SPDGRTLFVN  519 (524)
T ss_pred             CCCCCEEEEE
Confidence            99997 5553

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.38  E-value=0.0015  Score=54.22  Aligned_cols=104  Identities=11%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             CcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC--CCCeEEEEe--------cCccccceeEEecCCCE
Q 047259            3 NDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP--ELEETTVLH--------EGFYFANGVALSKDENF   71 (225)
Q Consensus         3 ndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~~~~~~~~~--------~~~~~pnGi~~~~dg~~   71 (225)
                      ++|+.++. +++|+..-.                ....||.++.  .........        -.+.-+.+++++|..+.
T Consensus       121 EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~  184 (248)
T PF06977_consen  121 EGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGH  184 (248)
T ss_dssp             EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTE
T ss_pred             EEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCe
Confidence            57888885 467776332                1345777765  212222211        12345899999999989


Q ss_pred             EEEEeCCCCEEEEEEecCCCCCceeEEeccCC------CCCCceEECCCCCEEEEeec
Q 047259           72 VVVCESWKFRCRRYWLKGPRQGRLESFIEHLP------GGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        72 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~------g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      |||-...+.+|..++.+|...+... +.....      ..|.||++|++|+||++.-+
T Consensus       185 lliLS~es~~l~~~d~~G~~~~~~~-L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  185 LLILSDESRLLLELDRQGRVVSSLS-LDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             EEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred             EEEEECCCCeEEEECCCCCEEEEEE-eCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence            9999999999999997663111111 111111      14899999999999998743

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.37  E-value=0.016  Score=51.95  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=57.8

Q ss_pred             cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC--CCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 047259            4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE--LEETTVLHEGFYFANGVALSKDENFVVVCESW--   78 (225)
Q Consensus         4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--   78 (225)
                      .+.+.|||+ |+|+...               .+..+||.++.+  +++.+.+.........++|+|||+.|+++...  
T Consensus       285 ~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g  349 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG  349 (428)
T ss_pred             CeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence            356677775 5555332               113468887653  23344444333445678999999988766443  


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEE
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFW  118 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~  118 (225)
                      ...|+.++++++   ..+.+.. .+....+..+.+||+..
T Consensus       350 ~~~I~v~dl~~g---~~~~Lt~-~~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        350 VRQICVYDLATG---RDYQLTT-SPENKESPSWAIDSLHL  385 (428)
T ss_pred             CcEEEEEECCCC---CeEEccC-CCCCccceEECCCCCEE
Confidence            458999998753   3333332 22344678899999743

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.33  E-value=0.017  Score=49.13  Aligned_cols=140  Identities=19%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             EEEEEeCCCCeEEEEe--cCccccce-eEEecCCCEEEEEeC----CCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           39 QLLKYDPELEETTVLH--EGFYFANG-VALSKDENFVVVCES----WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~--~~~~~pnG-i~~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      -.+.+|..+|+.....  +....-+| -+||+||++||.+|.    +.+.|-.|+.... ......|.. ..-.|=.+.+
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s-~GIGPHel~l  106 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPS-HGIGPHELLL  106 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecC-CCcChhhEEE
Confidence            4678888877765443  22233344 678999999999974    5789999998621 222222221 1125889999


Q ss_pred             CCCC-CEEEEeecCCchhhhhhhcChhH-HH-HHHhhhhhhhhhccCCCCcceEEEEEC-CCCcEEEEEECCCCCcccce
Q 047259          112 APDG-SFWVALIKMNQTGVRAIQSCPDK-WK-LLQAYPELINLLIPLGNDAGARIVKVD-THGKIIMDFNDPNATYISFV  187 (225)
Q Consensus       112 d~~G-~l~v~~~~~~~~~~~~~~~~~~~-r~-~~~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~~~~~~~p~g~~~~~~  187 (225)
                      .+|| .|.|++.+        +..+|.. |. +..  +    .   .    ...+..+| .+|++++....|....--.+
T Consensus       107 ~pDG~tLvVANGG--------I~Thpd~GR~kLNl--~----t---M----~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen  107 MPDGETLVVANGG--------IETHPDSGRAKLNL--D----T---M----QPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             cCCCCEEEEEcCC--------CccCcccCceecCh--h----h---c----CCceEEEecCCCceeeeeecCccccccce
Confidence            9999 78888887        2334332 11 110  0    0   1    33566674 46888888766542110011


Q ss_pred             eEE-EEeCCEEEEee
Q 047259          188 TSA-VEFEDNLYMAS  201 (225)
Q Consensus       188 t~~-~~~~~~Lyv~~  201 (225)
                      -=+ +..+|.++++.
T Consensus       166 RHLa~~~~G~V~~a~  180 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAM  180 (305)
T ss_pred             eeEEecCCCcEEEEE
Confidence            112 23457777764

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.30  E-value=0.00033  Score=37.72  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.7

Q ss_pred             CCCcEEEcCCCcEEEEcCC
Q 047259            1 FTNDVIEASDGSLYFTVSS   19 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~   19 (225)
                      +|++|+++++|+||++|..
T Consensus         3 ~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    3 YPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             SEEEEEEETTSEEEEEECC
T ss_pred             CCcEEEEeCCCCEEEEECC
Confidence            5899999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.30  E-value=0.014  Score=54.08  Aligned_cols=154  Identities=14%  Similarity=0.133  Sum_probs=84.5

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC------------------------------------
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK------------------------------------   79 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~------------------------------------   79 (225)
                      -.+.+-.+|.++.++.-.+.-...|.++++++||+++|++..++                                    
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~  292 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT  292 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence            36778888987554433233345899999999999999996221                                    


Q ss_pred             ---CEEEEEEecCCC-CC-ceeEEeccCCCCCCceEECCCCCEEEEeecCC--chhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           80 ---FRCRRYWLKGPR-QG-RLESFIEHLPGGPDNINLAPDGSFWVALIKMN--QTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        80 ---~~I~~~~~~~~~-~~-~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~--~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                         ++|..+|...+. .+ ....++ ..+-.|=|+++++||+..++.....  .+++++    ..++..+          
T Consensus       293 V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv----~k~k~~~----------  357 (635)
T PRK02888        293 IGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV----RKLDDLF----------  357 (635)
T ss_pred             ECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEC----hhhhhhh----------
Confidence               233333322100 00 111111 1345799999999998555554422  112111    0000000          


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          153 IPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                             .+   +++++..++..+..  |.  ...-.....+|..|.+-+....|.+.++.+..++
T Consensus       358 -------~~---~~~~~~~vvaevev--Gl--GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~  409 (635)
T PRK02888        358 -------DG---KIKPRDAVVAEPEL--GL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRA  409 (635)
T ss_pred             -------hc---cCCccceEEEeecc--CC--CcceEEECCCCCEEEeEeecceeEEEehHHHHHH
Confidence                   00   12444445555544  32  1222233446789999999999999998875543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.28  E-value=0.017  Score=50.66  Aligned_cols=140  Identities=16%  Similarity=0.217  Sum_probs=80.7

Q ss_pred             EEEEEeCCCCeEEEEe-------cCccccceeEEec---CCCEEEEEeCCCCEEEEEEecCCCCCc-----eeEEeccCC
Q 047259           39 QLLKYDPELEETTVLH-------EGFYFANGVALSK---DENFVVVCESWKFRCRRYWLKGPRQGR-----LESFIEHLP  103 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~-------~~~~~pnGi~~~~---dg~~Lyv~~~~~~~I~~~~~~~~~~~~-----~~~~~~~~~  103 (225)
                      ++|++|+.++.++.+.       ..+.-|.|+|+..   +|+.-.+.....+.+..|.+.....+.     .+.|  .++
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~  207 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG  207 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence            6899998778776653       3344588999963   354222333455788888885211121     2333  256


Q ss_pred             CCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--C-cEEEEEECC
Q 047259          104 GGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--G-KIIMDFNDP  179 (225)
Q Consensus       104 g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G-~~~~~~~~p  179 (225)
                      +.|.||++|.+ |.||+++-.                                     ..||+++.+  + ..-..+...
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-------------------------------------~GIW~y~Aep~~~~~~~~v~~~  250 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-------------------------------------VGIWRYDAEPEGGNDRTLVASA  250 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-------------------------------------TEEEEEESSCCC-S--EEEEEB
T ss_pred             CcceEEEEecccCCEEEecCc-------------------------------------cEEEEEecCCCCCCcceeeecc
Confidence            67999999975 889998855                                     367887754  2 222222211


Q ss_pred             CCC-ccc---ceeEEEE--eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          180 NAT-YIS---FVTSAVE--FEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       180 ~g~-~~~---~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      .|. ...   +++....  ..|.|.+++.+.+...+|++.+..+
T Consensus       251 ~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~  294 (381)
T PF02333_consen  251 DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNA  294 (381)
T ss_dssp             SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--
T ss_pred             cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCc
Confidence            222 111   2332222  2478999999999999999987643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.21  E-value=0.033  Score=50.06  Aligned_cols=71  Identities=23%  Similarity=0.154  Sum_probs=54.4

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEe
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG----FYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      |-|++...|||+.|.|..+                 .|.++.||.++|+..-..++    -..-.+|.|+||++. +++.
T Consensus       192 FV~~VRysPDG~~Fat~gs-----------------Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~-~~T~  253 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGS-----------------DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ-FLTV  253 (603)
T ss_pred             ceeeEEECCCCCeEEEecC-----------------CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce-EEEe
Confidence            6789999999999999887                 78999999988875544432    234578999999984 4666


Q ss_pred             CCCCEEEEEEecC
Q 047259           77 SWKFRCRRYWLKG   89 (225)
Q Consensus        77 ~~~~~I~~~~~~~   89 (225)
                      +....+..++...
T Consensus       254 SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  254 SADKTIKIWDVST  266 (603)
T ss_pred             cCCceEEEEEeec
Confidence            6666666666654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.047  Score=49.28  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC-CCCe-EEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP-ELEE-TTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~-~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +++++.+||++.++-+.                 ...|..+|. ..+. ++.+.....+.+.++|+|+++ ++++-+.++
T Consensus       207 ~~~~fs~d~~~l~s~s~-----------------D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~  268 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSD-----------------DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDG  268 (456)
T ss_pred             eeeEECCCCcEEEEecC-----------------CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCC
Confidence            56777777775555443                 344555554 3334 344445567789999999995 889999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .|..+++.++  ...+.+.. ..+.-.++++.++|++.++...
T Consensus       269 tvriWd~~~~--~~~~~l~~-hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  269 TVRIWDVRTG--ECVRKLKG-HSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             cEEEEeccCC--eEEEeeec-cCCceEEEEECCCCCEEEEcCC
Confidence            9999998752  22333332 2233467899999998887743

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.18  E-value=0.011  Score=53.15  Aligned_cols=74  Identities=18%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             eEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCc---e-eEEeccCCCCCCceEECCC-------CCE
Q 047259           49 ETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGR---L-ESFIEHLPGGPDNINLAPD-------GSF  117 (225)
Q Consensus        49 ~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~---~-~~~~~~~~g~Pd~i~~d~~-------G~l  117 (225)
                      +++++++++..|.+|++.|||+ |||++...++|++++..+.....   . .+......+.+-+|+++++       +.|
T Consensus        21 ~~~~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        21 DKKVLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            4567889999999999999986 99999988999999865421110   1 1111111245678999865       368


Q ss_pred             EEEeec
Q 047259          118 WVALIK  123 (225)
Q Consensus       118 ~v~~~~  123 (225)
                      ||+-..
T Consensus       100 Yvsyt~  105 (454)
T TIGR03606       100 YISYTY  105 (454)
T ss_pred             EEEEec
Confidence            998644

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.16  E-value=0.0014  Score=55.64  Aligned_cols=57  Identities=23%  Similarity=0.207  Sum_probs=46.8

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |++...- +|+|||.|++                 +|.|+++|+++|+.+.++....+|.||+|.  |+.++|+-+.
T Consensus       205 PhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk  261 (335)
T TIGR03032       205 PHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK  261 (335)
T ss_pred             CcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence            3344333 6889999987                 789999999889999998888899999999  7888887764

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PTZ00421 coronin; Provisional

Probab=97.14  E-value=0.11  Score=47.54  Aligned_cols=84  Identities=12%  Similarity=0.059  Sum_probs=50.9

Q ss_pred             CcEEEEEeCCCCe--------EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259           37 HGQLLKYDPELEE--------TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN  108 (225)
Q Consensus        37 ~g~v~~~d~~~~~--------~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~  108 (225)
                      .|.|..||..++.        +..+.........++|+|++..++++-+..+.|..+++...  .....+. ........
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~~~l~-~h~~~V~s  173 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAVEVIK-CHSDQITS  173 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEEEEEc-CCCCceEE
Confidence            5666666654321        11222233445789999986547777777889999998642  1122221 12233467


Q ss_pred             eEECCCCCEEEEeec
Q 047259          109 INLAPDGSFWVALIK  123 (225)
Q Consensus       109 i~~d~~G~l~v~~~~  123 (225)
                      +++.++|++.++...
T Consensus       174 la~spdG~lLatgs~  188 (493)
T PTZ00421        174 LEWNLDGSLLCTTSK  188 (493)
T ss_pred             EEEECCCCEEEEecC
Confidence            889999998777655

>PTZ00420 coronin; Provisional

Probab=97.13  E-value=0.12  Score=48.02  Aligned_cols=62  Identities=5%  Similarity=0.082  Sum_probs=43.5

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ...+.++|+|++..++++.+..+.|..+++....  ....+ . .+.....++++++|.++++...
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i-~-~~~~V~SlswspdG~lLat~s~  187 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI-N-MPKKLSSLKWNIKGNLLSGTCV  187 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE-e-cCCcEEEEEECCCCCEEEEEec
Confidence            4567899999998777777778899999986421  11111 1 2334568899999998887654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.023  Score=47.75  Aligned_cols=172  Identities=12%  Similarity=0.035  Sum_probs=83.1

Q ss_pred             CCCcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCC-----------------CEEEEEEecCCCCCc
Q 047259           35 KPHGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWK-----------------FRCRRYWLKGPRQGR   94 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~-----------------~~I~~~~~~~~~~~~   94 (225)
                      ...|.|-.||.+ .....+.   ...-.|.-+.|.+||++|.|++-+-                 -++.-++..++.+-+
T Consensus       137 ~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         137 PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence            457888889876 3344332   3456799999999999888876421                 112222211111111


Q ss_pred             eeEEeccCC-CCCCceEECCCCCEEEEeecC--CchhhhhhhcChhHHHH-HHhhhhh--------hhhhccCCCCcceE
Q 047259           95 LESFIEHLP-GGPDNINLAPDGSFWVALIKM--NQTGVRAIQSCPDKWKL-LQAYPEL--------INLLIPLGNDAGAR  162 (225)
Q Consensus        95 ~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~--~~~~~~~~~~~~~~r~~-~~~~p~~--------~~~~~~~~~~~~~~  162 (225)
                      ++++...+. -.-..++.++||++|.++.-.  ++..-..+.....-+.+ +..+|+.        +.-+.-+..  .+.
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~--~gl  293 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR--DGL  293 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc--CCe
Confidence            111110000 024789999999999987642  21110011100000000 0011221        111111222  566


Q ss_pred             EEEECCCCcEEEEEECCCCCcccce-----eEEEEeCCEEEEeeCCCCeEEEE
Q 047259          163 IVKVDTHGKIIMDFNDPNATYISFV-----TSAVEFEDNLYMASIQSKFVGKL  210 (225)
Q Consensus       163 V~~~d~~G~~~~~~~~p~g~~~~~~-----t~~~~~~~~Lyv~~~~~~~i~~~  210 (225)
                      |..-+|.|....++.-..|.++...     .+++...+-+-|++- .+++.-+
T Consensus       294 V~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg-~G~~~~~  345 (366)
T COG3490         294 VALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSG-QGRIIFY  345 (366)
T ss_pred             EEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecC-CceEEec
Confidence            7777788887777776677765322     222333445555554 4444433

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.07  E-value=0.0052  Score=50.14  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             CCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +|+++.+.|- .+|++|+- .|....|-.+.-.+....+=..+|.+..    -......|.|++++.+|+ |||+..+.+
T Consensus       160 sNgl~Wd~d~K~fY~iDsl-n~~V~a~dyd~~tG~~snr~~i~dlrk~----~~~e~~~PDGm~ID~eG~-L~Va~~ng~  233 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSL-NYEVDAYDYDCPTGDLSNRKVIFDLRKS----QPFESLEPDGMTIDTEGN-LYVATFNGG  233 (310)
T ss_pred             CccccccccCcEEEEEccC-ceEEeeeecCCCcccccCcceeEEeccC----CCcCCCCCCcceEccCCc-EEEEEecCc
Confidence            6899999876 58999886 2433222222111111111111222100    012356899999999987 999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCC-CCCceEECCC--CCEEEEeec
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPG-GPDNINLAPD--GSFWVALIK  123 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~i~~d~~--G~l~v~~~~  123 (225)
                      +|.++++.+++  -...+.  +|. .-..+++...  .-+||+...
T Consensus       234 ~V~~~dp~tGK--~L~eik--lPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  234 TVQKVDPTTGK--ILLEIK--LPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EEEEECCCCCc--EEEEEE--cCCCceEEEEecCCCccEEEEEehh
Confidence            99999997531  111111  332 2346677765  357888766

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.083  Score=47.71  Aligned_cols=122  Identities=18%  Similarity=0.143  Sum_probs=81.4

Q ss_pred             ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhh
Q 047259           54 HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQ  133 (225)
Q Consensus        54 ~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~  133 (225)
                      .+.....++++|+||++ ..++-+.+..|..+++... ....+++.. .......+++.++|++.++.....        
T Consensus       200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~-~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~--------  268 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDD-GRNLKTLKG-HSTYVTSVAFSPDGNLLVSGSDDG--------  268 (456)
T ss_pred             cccccceeeeEECCCCc-EEEEecCCceEEEeeccCC-CeEEEEecC-CCCceEEEEecCCCCEEEEecCCC--------
Confidence            34556789999999998 6788888888888888321 123445543 333457899999998888776611        


Q ss_pred             cChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeC
Q 047259          134 SCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       134 ~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~  212 (225)
                                                .-+|+.+.. |+.+..+..-.+    .++.+.. .++.++++......|.+.++
T Consensus       269 --------------------------tvriWd~~~-~~~~~~l~~hs~----~is~~~f~~d~~~l~s~s~d~~i~vwd~  317 (456)
T KOG0266|consen  269 --------------------------TVRIWDVRT-GECVRKLKGHSD----GISGLAFSPDGNLLVSASYDGTIRVWDL  317 (456)
T ss_pred             --------------------------cEEEEeccC-CeEEEeeeccCC----ceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence                                      234444433 788888876443    3555554 35555555556888888888


Q ss_pred             CCccc
Q 047259          213 NTPEA  217 (225)
Q Consensus       213 ~~~~~  217 (225)
                      .+...
T Consensus       318 ~~~~~  322 (456)
T KOG0266|consen  318 ETGSK  322 (456)
T ss_pred             CCCce
Confidence            87763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.99  E-value=0.13  Score=41.30  Aligned_cols=51  Identities=16%  Similarity=-0.070  Sum_probs=29.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|+.+|..+|++.-..+............ ++.+||.... ++|+.++..+
T Consensus        45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~v~v~~~~-~~l~~~d~~t   95 (238)
T PF13360_consen   45 DGNLYALDAKTGKVLWRFDLPGPISGAPVVD-GGRVYVGTSD-GSLYALDAKT   95 (238)
T ss_dssp             TSEEEEEETTTSEEEEEEECSSCGGSGEEEE-TTEEEEEETT-SEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEeeccccccceeeec-ccccccccce-eeeEecccCC
Confidence            6799999987787543322211111112223 3458888743 4999999654

...

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.99  E-value=0.019  Score=48.56  Aligned_cols=129  Identities=11%  Similarity=0.164  Sum_probs=81.4

Q ss_pred             cceeEEecC--CCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCC--CCCceEECCCCCEEEEeecCCchhhhhhhc
Q 047259           60 ANGVALSKD--ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPG--GPDNINLAPDGSFWVALIKMNQTGVRAIQS  134 (225)
Q Consensus        60 pnGi~~~~d--g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g--~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~  134 (225)
                      -.|+|+...  +.+||.++..+++|-.|+-.=.......-|.+- +|.  .|-||.-- .|+|||+-......       
T Consensus       140 YkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~-------  211 (336)
T TIGR03118       140 YKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD-------  211 (336)
T ss_pred             eeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc-------
Confidence            357777743  578999999999999997431111111123321 232  47777555 37999997663210       


Q ss_pred             ChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEE--E-----eCCEEEEeeCCCCeE
Q 047259          135 CPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAV--E-----FEDNLYMASIQSKFV  207 (225)
Q Consensus       135 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~--~-----~~~~Lyv~~~~~~~i  207 (225)
                         .+.   .          ......+.|-+||++|++++.+.+ .|. +..+=.++  +     ..+.|.|+++++.+|
T Consensus       212 ---~~d---~----------v~G~G~G~VdvFd~~G~l~~r~as-~g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~I  273 (336)
T TIGR03118       212 ---RND---E----------VAGAGLGYVNVFTLNGQLLRRVAS-SGR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTI  273 (336)
T ss_pred             ---ccc---c----------ccCCCcceEEEEcCCCcEEEEecc-CCc-ccCCceeeeChhhhCCCCCCeEEeecCCcee
Confidence               000   0          011127899999999999999976 233 33333332  1     258999999999999


Q ss_pred             EEEeCCC
Q 047259          208 GKLPLNT  214 (225)
Q Consensus       208 ~~~~~~~  214 (225)
                      -.|+...
T Consensus       274 naFD~~s  280 (336)
T TIGR03118       274 NAYDPQS  280 (336)
T ss_pred             EEecCCC
Confidence            9999863

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.98  E-value=0.093  Score=46.25  Aligned_cols=127  Identities=13%  Similarity=0.142  Sum_probs=74.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CC-CCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LP-GGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~-g~Pd~i~~d~~  114 (225)
                      .|.++.+|..+|+..= ......+..++..  ++.||+... .+.|+.++.+++    ..++... .. ......++ .+
T Consensus       265 ~g~l~ald~~tG~~~W-~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG----~~~W~~~~~~~~~~~sp~v-~~  335 (394)
T PRK11138        265 NGNLVALDLRSGQIVW-KREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGG----VELWSQSDLLHRLLTAPVL-YN  335 (394)
T ss_pred             CCeEEEEECCCCCEEE-eecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCC----cEEEcccccCCCcccCCEE-EC
Confidence            5788999988776321 1122333445544  346998875 578999998642    1222211 11 11122233 25


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |.+|+++..                                     +.+..+|+ +|+++.....+.+...   +..+..
T Consensus       336 g~l~v~~~~-------------------------------------G~l~~ld~~tG~~~~~~~~~~~~~~---s~P~~~  375 (394)
T PRK11138        336 GYLVVGDSE-------------------------------------GYLHWINREDGRFVAQQKVDSSGFL---SEPVVA  375 (394)
T ss_pred             CEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCcce---eCCEEE
Confidence            788887543                                     56778887 5998887765433222   222346


Q ss_pred             CCEEEEeeCCCCeEEEEeCC
Q 047259          194 EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       194 ~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      +++|||++. ++.|..++++
T Consensus       376 ~~~l~v~t~-~G~l~~~~~~  394 (394)
T PRK11138        376 DDKLLIQAR-DGTVYAITRP  394 (394)
T ss_pred             CCEEEEEeC-CceEEEEeCC
Confidence            889999964 5677777653

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.98  E-value=0.01  Score=53.87  Aligned_cols=120  Identities=14%  Similarity=0.214  Sum_probs=74.4

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC-------eEEEEec-----C------------
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE-------ETTVLHE-----G------------   56 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------~~~~~~~-----~------------   56 (225)
                      |+++++.+ .|++|||....... ..-..........|.|++|-+.++       ++++.+.     .            
T Consensus       419 pE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~  497 (616)
T COG3211         419 PEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN  497 (616)
T ss_pred             ccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence            78899998 46899997762211 111112234567899999988766       6666532     2            


Q ss_pred             -ccccceeEEecCCCEEEEEeCCCC--------EEEEEEecCCCCCceeEEeccCC-CCCCceEECCCCC-EEEEeec
Q 047259           57 -FYFANGVALSKDENFVVVCESWKF--------RCRRYWLKGPRQGRLESFIEHLP-GGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        57 -~~~pnGi~~~~dg~~Lyv~~~~~~--------~I~~~~~~~~~~~~~~~~~~~~~-g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                       +..|.+|+++|.|+ |||++-+.+        -+..+...+...+....|..... ..-.|.++.+||+ +||...-
T Consensus       498 ~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQH  574 (616)
T COG3211         498 WFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQH  574 (616)
T ss_pred             cccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecC
Confidence             23399999999998 888775543        22222223334556666653211 1346889999986 7777544

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=96.96  E-value=0.043  Score=46.81  Aligned_cols=125  Identities=13%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC------------ccccceeEEe--
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG------------FYFANGVALS--   66 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------------~~~pnGi~~~--   66 (225)
                      +.|+|..+++|++.++-.+                 ...|+++++.+|++.=...+            +.+-....+-  
T Consensus       145 HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~  207 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE  207 (299)
T ss_pred             EeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEecc
Confidence            3688888999988777554                 55788888777765433221            2333344444  


Q ss_pred             --cCCCEEEEEe---------CCCCEEEEEEecCCCCCceeEEecc----CCCCCCceEECCCCCEEEEeecCCchhhhh
Q 047259           67 --KDENFVVVCE---------SWKFRCRRYWLKGPRQGRLESFIEH----LPGGPDNINLAPDGSFWVALIKMNQTGVRA  131 (225)
Q Consensus        67 --~dg~~Lyv~~---------~~~~~I~~~~~~~~~~~~~~~~~~~----~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~  131 (225)
                        +++..+.+-+         ...++|+.++.........+.+...    ......++..-++|+++|+...        
T Consensus       208 ~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~--------  279 (299)
T PF14269_consen  208 SNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN--------  279 (299)
T ss_pred             CCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC--------
Confidence              3443223332         1456777777764222222222200    1112345666677888888876        


Q ss_pred             hhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC
Q 047259          132 IQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND  178 (225)
Q Consensus       132 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~  178 (225)
                                                  .+++.+++++|+++..+..
T Consensus       280 ----------------------------~g~~~E~~~~G~vv~~~~f  298 (299)
T PF14269_consen  280 ----------------------------NGRISEFTPDGEVVWEAQF  298 (299)
T ss_pred             ----------------------------CceEEEECCCCCEEEEEEC
Confidence                                        6799999999999887653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.93  E-value=0.094  Score=49.18  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.++..|||.+.+|-..                 .|.|-.||..+|-+-... +.-..-.++.|+.+|+ ..++.+-.++
T Consensus       354 ~~l~YSpDgq~iaTG~e-----------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGt  415 (893)
T KOG0291|consen  354 TSLAYSPDGQLIATGAE-----------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGT  415 (893)
T ss_pred             eeEEECCCCcEEEeccC-----------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCe
Confidence            45777888887777443                 678888887767665554 4456778999999998 7789999999


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      |..+|+..  -.+.++|....|-.-.-+++|+.|.|..+...
T Consensus       416 VRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~  455 (893)
T KOG0291|consen  416 VRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ  455 (893)
T ss_pred             EEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence            99999863  12445554222222356899999998887655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.87  E-value=0.068  Score=45.02  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             ccceeEEecCCCEEEEEeC-CCCEEEEEEecCCCCCceeEEeccCCC--------CCCceEECC-CCCEEEEeecCCchh
Q 047259           59 FANGVALSKDENFVVVCES-WKFRCRRYWLKGPRQGRLESFIEHLPG--------GPDNINLAP-DGSFWVALIKMNQTG  128 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~g--------~Pd~i~~d~-~G~l~v~~~~~~~~~  128 (225)
                      +-.|+|++|+++.|||+-. ..-+|+.++....   ....-....+.        --.|+.+|+ .|+++|-...     
T Consensus       182 GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~---~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E-----  253 (316)
T COG3204         182 GFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS---SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE-----  253 (316)
T ss_pred             CceeeecCCCCceEEEEEccCCcEEEEEecCCc---ccccccccCcccccceEeeccccceecCCCCcEEEEecC-----
Confidence            4469999999988888764 4456666653211   11111100110        135777776 4677776666     


Q ss_pred             hhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCC-----cccceeEEE-EeCCEEEEeeC
Q 047259          129 VRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNAT-----YISFVTSAV-EFEDNLYMASI  202 (225)
Q Consensus       129 ~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~-----~~~~~t~~~-~~~~~Lyv~~~  202 (225)
                                                     ...++++|.+|.+++.+..-.|.     -++..-+++ +++|.|||.+=
T Consensus       254 -------------------------------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE  302 (316)
T COG3204         254 -------------------------------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             -------------------------------CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence                                           45899999999988887654332     133344444 45799999973


Q ss_pred             CCCeEEEEeCC
Q 047259          203 QSKFVGKLPLN  213 (225)
Q Consensus       203 ~~~~i~~~~~~  213 (225)
                       .+-.++|..+
T Consensus       303 -Pnlfy~F~~~  312 (316)
T COG3204         303 -PNLFYRFTPQ  312 (316)
T ss_pred             -CCcceecccC
Confidence             3555555444

>PTZ00420 coronin; Provisional

Probab=96.85  E-value=0.24  Score=45.99  Aligned_cols=52  Identities=8%  Similarity=-0.129  Sum_probs=36.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..||..+++.............++|++||+ ++++....+.|..+++..
T Consensus       147 DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC
Confidence            6778888877665433333334567899999998 556666678899999864

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.85  E-value=0.02  Score=49.36  Aligned_cols=110  Identities=20%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-E--ecCc-------------cccceeEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-L--HEGF-------------YFANGVAL   65 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~--~~~~-------------~~pnGi~~   65 (225)
                      +++|++.++|.+|+++-+..           ......+|++++.+ |++.. +  ...+             ....||++
T Consensus        87 ~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~  154 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV  154 (326)
T ss_pred             hhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEE
Confidence            46889988999999988721           01124688899876 65422 1  1111             23579999


Q ss_pred             ecCCCEEEEEeCCC---------------CEEEEEEecCCCCCceeEEeccC--------CCCCCceEECCCCCEEEEee
Q 047259           66 SKDENFVVVCESWK---------------FRCRRYWLKGPRQGRLESFIEHL--------PGGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        66 ~~dg~~Lyv~~~~~---------------~~I~~~~~~~~~~~~~~~~~~~~--------~g~Pd~i~~d~~G~l~v~~~  122 (225)
                      +|||+.||++....               -+|++|++..... ....|.-.+        ...+..|+.-++|+++|-.-
T Consensus       155 ~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~-~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  155 SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGE-PVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCc-cceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            99999887776432               4788888763110 112222111        12456778888999999876


Q ss_pred             cC
Q 047259          123 KM  124 (225)
Q Consensus       123 ~~  124 (225)
                      ..
T Consensus       234 ~~  235 (326)
T PF13449_consen  234 DF  235 (326)
T ss_pred             cC
Confidence            63

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.83  E-value=0.19  Score=40.46  Aligned_cols=133  Identities=18%  Similarity=0.133  Sum_probs=71.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCc-ccccee--EEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTVLHEGF-YFANGV--ALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~-~~pnGi--~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .|.|..+|+.+|+..--..-. .....+  ++ ++++.+|+++ ..+.|+.++..++   + ..+....++.......-.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~-~~~~l~~~d~~tG---~-~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVAS-GDGNLYALDAKTG---K-VLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEE-TTSEEEEEETTTS---E-EEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEc-CCCEEEEEECCCC---C-EEEEeeccccccceeeec
Confidence            467788887666532221111 123333  33 2455699984 6789999998542   2 122212222111222334


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEEC-CCCcEEEEE-ECCC-CCcccceeEE
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVD-THGKIIMDF-NDPN-ATYISFVTSA  190 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~~~~~-~~p~-g~~~~~~t~~  190 (225)
                      ++.+|++...                                     +.+..+| .+|+++... .... ..........
T Consensus        76 ~~~v~v~~~~-------------------------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~  118 (238)
T PF13360_consen   76 GGRVYVGTSD-------------------------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP  118 (238)
T ss_dssp             TTEEEEEETT-------------------------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred             ccccccccce-------------------------------------eeeEecccCCcceeeeeccccccccccccccCc
Confidence            5778887733                                     3788899 679998774 4321 1101122223


Q ss_pred             EEeCCEEEEeeCCCCeEEEEeCC
Q 047259          191 VEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       191 ~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      ...++.+|++.. +..|..+++.
T Consensus       119 ~~~~~~~~~~~~-~g~l~~~d~~  140 (238)
T PF13360_consen  119 AVDGDRLYVGTS-SGKLVALDPK  140 (238)
T ss_dssp             EEETTEEEEEET-CSEEEEEETT
T ss_pred             eEecCEEEEEec-cCcEEEEecC
Confidence            345777777765 5677777655

...

>PTZ00421 coronin; Provisional

Probab=96.77  E-value=0.37  Score=44.05  Aligned_cols=85  Identities=9%  Similarity=-0.039  Sum_probs=50.6

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           35 KPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ...+.|..||..+++......+ ...-+.++|+|||+ ++++-+.++.|..+++...  .....+..+.......+.+.+
T Consensus       145 s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~~~~~~~~~w~~  221 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDG--TIVSSVEAHASAKSQRCLWAK  221 (493)
T ss_pred             eCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCC--cEEEEEecCCCCcceEEEEcC
Confidence            3467788888776654444433 34568999999998 6667777889999998642  111122211111233455666


Q ss_pred             CCCEEEEee
Q 047259          114 DGSFWVALI  122 (225)
Q Consensus       114 ~G~l~v~~~  122 (225)
                      ++...++..
T Consensus       222 ~~~~ivt~G  230 (493)
T PTZ00421        222 RKDLIITLG  230 (493)
T ss_pred             CCCeEEEEe
Confidence            665555443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.77  E-value=0.059  Score=46.47  Aligned_cols=167  Identities=20%  Similarity=0.185  Sum_probs=92.3

Q ss_pred             cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEE--EEec------CccccceeEEecCCCEEEE
Q 047259            4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETT--VLHE------GFYFANGVALSKDENFVVV   74 (225)
Q Consensus         4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~--~~~~------~~~~pnGi~~~~dg~~Lyv   74 (225)
                      .+++++||+ +|+.+..  |.+      ...+.++-.|-.||..+-+.+  +.+.      .+.+++-++++.||+++||
T Consensus        40 ~~~~spdgk~~y~a~T~--~sR------~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V  111 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETF--YSR------GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV  111 (342)
T ss_dssp             EEEE-TTSSEEEEEEEE--EEE------TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE
T ss_pred             ceeECCCCCEEEEEEEE--Eec------cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEE
Confidence            377888885 7776664  222      222344566888998754322  2222      2457889999999999999


Q ss_pred             EeCC-CCEEEEEEecCCCCCceeEEec--cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh
Q 047259           75 CESW-KFRCRRYWLKGPRQGRLESFIE--HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL  151 (225)
Q Consensus        75 ~~~~-~~~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  151 (225)
                      .+.. ...|..+|++.+   +   |..  ..||. -.+--.+..+++.-+...                           
T Consensus       112 ~N~TPa~SVtVVDl~~~---k---vv~ei~~PGC-~~iyP~~~~~F~~lC~DG---------------------------  157 (342)
T PF06433_consen  112 QNFTPATSVTVVDLAAK---K---VVGEIDTPGC-WLIYPSGNRGFSMLCGDG---------------------------  157 (342)
T ss_dssp             EEESSSEEEEEEETTTT---E---EEEEEEGTSE-EEEEEEETTEEEEEETTS---------------------------
T ss_pred             EccCCCCeEEEEECCCC---c---eeeeecCCCE-EEEEecCCCceEEEecCC---------------------------
Confidence            8865 568889998642   1   221  13441 112112222344333331                           


Q ss_pred             hccCCCCcceEEEEECCCCcEEEEEE---CCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCcccccCCC
Q 047259          152 LIPLGNDAGARIVKVDTHGKIIMDFN---DPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTPEAELAPK  222 (225)
Q Consensus       152 ~~~~~~~~~~~V~~~d~~G~~~~~~~---~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~  222 (225)
                              .-.-+.+|.+|++.....   +++...+ ....+.. .++++|+.++ .+.|..+++.++.+++.++
T Consensus       158 --------sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~-f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~  222 (342)
T PF06433_consen  158 --------SLLTVTLDADGKEAQKSTKVFDPDDDPL-FEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKP  222 (342)
T ss_dssp             --------CEEEEEETSTSSEEEEEEEESSTTTS-B--S--EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEE
T ss_pred             --------ceEEEEECCCCCEeEeeccccCCCCccc-ccccceECCCCeEEEEec-CCEEEEEeccCCcccccCc
Confidence                    234477888998864432   2322211 1111222 3578888664 5889999998888776653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.73  E-value=0.073  Score=42.35  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=50.2

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      .|..||.+...+..+ . -...|.|.|+|+|++|.++..+  .+.|..++.+.     .+.+..........++++|+|+
T Consensus        84 ~v~lyd~~~~~i~~~-~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr  156 (194)
T PF08662_consen   84 KVTLYDVKGKKIFSF-G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGR  156 (194)
T ss_pred             ccEEEcCcccEeEee-c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCC
Confidence            566666642222222 2 2456899999999988887754  45788888753     2222322223467899999999


Q ss_pred             EEEEeec
Q 047259          117 FWVALIK  123 (225)
Q Consensus       117 l~v~~~~  123 (225)
                      .+++...
T Consensus       157 ~~~ta~t  163 (194)
T PF08662_consen  157 YLATATT  163 (194)
T ss_pred             EEEEEEe
Confidence            8887654

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.68  E-value=0.092  Score=49.02  Aligned_cols=133  Identities=12%  Similarity=0.016  Sum_probs=75.7

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEE---EecCC--CCCceeEEeccCCCCCCceE
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRY---WLKGP--RQGRLESFIEHLPGGPDNIN  110 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~---~~~~~--~~~~~~~~~~~~~g~Pd~i~  110 (225)
                      ..+.++.++.+.++...  ........+.|||||+++.+...  ++|+.-   ..+++  .+...+.+...+...+..+.
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            35566655555444433  22235889999999998866543  577763   32222  12222222222223357788


Q ss_pred             ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEE
Q 047259          111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSA  190 (225)
Q Consensus       111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~  190 (225)
                      +-.++.|.|...+.                                   ...|++++.||.....+.  .+........+
T Consensus       504 W~~~~~L~V~~~~~-----------------------------------~~~v~~v~vDG~~~~~~~--~~n~~~~v~~v  546 (591)
T PRK13616        504 WRTGDSLVVGRSDP-----------------------------------EHPVWYVNLDGSNSDALP--SRNLSAPVVAV  546 (591)
T ss_pred             EecCCEEEEEecCC-----------------------------------CCceEEEecCCccccccC--CCCccCceEEE
Confidence            88899988764331                                   345888988987755432  33333344444


Q ss_pred             EEeCCEEEEeeCCCCeEEEEe
Q 047259          191 VEFEDNLYMASIQSKFVGKLP  211 (225)
Q Consensus       191 ~~~~~~Lyv~~~~~~~i~~~~  211 (225)
                      +-..+.||+++..  -+..++
T Consensus       547 aa~~~~iyv~~~~--g~~~l~  565 (591)
T PRK13616        547 AASPSTVYVTDAR--AVLQLP  565 (591)
T ss_pred             ecCCceEEEEcCC--ceEEec
Confidence            4445789998644  355554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.66  E-value=0.12  Score=45.78  Aligned_cols=140  Identities=16%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             EEEEEeCCCCeEEEEecCcccc----ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEEC
Q 047259           39 QLLKYDPELEETTVLHEGFYFA----NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLA  112 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~p----nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d  112 (225)
                      .+|.||..+++++.+-.....+    .--.+++|+++|. ..-..+.|..+...++   .   ++..  .+|.-.+++++
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G~~G~I~lLhakT~---e---li~s~KieG~v~~~~fs  353 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIA-IAGNNGHIHLLHAKTK---E---LITSFKIEGVVSDFTFS  353 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEecCCCCeEE-EcccCceEEeehhhhh---h---hhheeeeccEEeeEEEe
Confidence            5788888777766653222222    3345789988443 3445678888776532   1   2211  45677899999


Q ss_pred             CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE
Q 047259          113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV  191 (225)
Q Consensus       113 ~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~  191 (225)
                      +||+..++..+                                    .|.|+++|-. -+.+..+.+ +|. +.+.+.+.
T Consensus       354 Sdsk~l~~~~~------------------------------------~GeV~v~nl~~~~~~~rf~D-~G~-v~gts~~~  395 (514)
T KOG2055|consen  354 SDSKELLASGG------------------------------------TGEVYVWNLRQNSCLHRFVD-DGS-VHGTSLCI  395 (514)
T ss_pred             cCCcEEEEEcC------------------------------------CceEEEEecCCcceEEEEee-cCc-cceeeeee
Confidence            99986666655                                    4678887765 356666766 454 44444443


Q ss_pred             EeCCEEEEeeCCCCeEEEEeCCCcccccCCCC
Q 047259          192 EFEDNLYMASIQSKFVGKLPLNTPEAELAPKA  223 (225)
Q Consensus       192 ~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~~  223 (225)
                      --++.++-+....+-|=+|+.+..-+.-+||-
T Consensus       396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             cCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence            34556556667788999999988888888763

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.59  E-value=0.17  Score=44.68  Aligned_cols=134  Identities=10%  Similarity=0.084  Sum_probs=80.3

Q ss_pred             CCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      .+|.|-.||.+++....-..+...| ..|.|+.+| +..++....++|..+|+..  ......|.-.....-..+.+|..
T Consensus       367 ~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQS  443 (506)
T ss_pred             CCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh--hcccceeeccccccceeEEEcCC
Confidence            4777777887654432223344444 679999998 4556777778899999863  22333333111112567999999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |.+.+....                                    .-.|..+...- ++.+..+.++-.  ...+.+-+.
T Consensus       444 Gt~L~~~g~------------------------------------~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg  485 (506)
T KOG0289|consen  444 GTYLGIAGS------------------------------------DLQVYICKKKTKSWTEIKELADHS--GLSTGVRFG  485 (506)
T ss_pred             CCeEEeecc------------------------------------eeEEEEEecccccceeeehhhhcc--cccceeeec
Confidence            987776633                                    44677777543 344443333221  123444455


Q ss_pred             CCEEEEeeCCCCeEEEE
Q 047259          194 EDNLYMASIQSKFVGKL  210 (225)
Q Consensus       194 ~~~Lyv~~~~~~~i~~~  210 (225)
                      +..-|+++...+++.++
T Consensus       486 ~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  486 EHAQYLASTSMDAILRL  502 (506)
T ss_pred             ccceEEeeccchhheEE
Confidence            67778888888888665

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.34  Score=40.97  Aligned_cols=63  Identities=13%  Similarity=0.014  Sum_probs=42.8

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEe-cCCCCCceeEEecc--CCCCCCceEECCCCCEEEEeec
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWL-KGPRQGRLESFIEH--LPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~-~~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ...-+.|.+||||+.+.++... +.++.++. +|.   ....|...  ....|-..++.|||.+.++...
T Consensus       187 ~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  187 EAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             ccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence            4455899999999988888765 56777764 332   22333321  1235678899999998888766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.52  E-value=0.067  Score=49.91  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=86.9

Q ss_pred             CCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           34 GKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        34 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      +.++.++|-.|.. .-.+..+..+.--.-+.|.|+.. ...+.+....+..++...+  ..+++|.++ .+--..+++.+
T Consensus       513 ~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH-~~~V~al~~Sp  587 (707)
T KOG0263|consen  513 HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG--NSVRIFTGH-KGPVTALAFSP  587 (707)
T ss_pred             CCceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC--cEEEEecCC-CCceEEEEEcC
Confidence            4567899998863 45566667777778899999975 3344455566666666532  357788643 33346899999


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEE
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVE  192 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~  192 (225)
                      .|+..++...                                    .+.|...|- .|+.+..+....+.    +..+.+
T Consensus       588 ~Gr~LaSg~e------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~t----i~SlsF  627 (707)
T KOG0263|consen  588 CGRYLASGDE------------------------------------DGLIKIWDLANGSLVKQLKGHTGT----IYSLSF  627 (707)
T ss_pred             CCceEeeccc------------------------------------CCcEEEEEcCCCcchhhhhcccCc----eeEEEE
Confidence            9887776655                                    234444443 35655555433332    333444


Q ss_pred             -eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          193 -FEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       193 -~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                       .+|.+.++.-+.+.|...++.....
T Consensus       628 S~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  628 SRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             ecCCCEEEecCCCCeEEEEEchhhcc
Confidence             3677777777778777776655443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.46  E-value=0.11  Score=45.67  Aligned_cols=160  Identities=18%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC-C-C-CceE
Q 047259           35 KPHGQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG-G-P-DNIN  110 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g-~-P-d~i~  110 (225)
                      .+..++|.+|..+++.+++.++- ....|..++++.+.||... ...+|+++++++.  ... ++.. .|. . . ....
T Consensus        57 dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~--e~~-~vy~-~p~~~~g~gt~v  131 (386)
T PF14583_consen   57 DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL--EER-VVYE-VPDDWKGYGTWV  131 (386)
T ss_dssp             TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EE-EEEE---TTEEEEEEEE
T ss_pred             CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC--cEE-EEEE-CCccccccccee
Confidence            34678999999999999987653 3344889999999875433 2358999999863  222 2332 221 1 1 2344


Q ss_pred             ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCC--CCcc-c-
Q 047259          111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPN--ATYI-S-  185 (225)
Q Consensus       111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~--g~~~-~-  185 (225)
                      .+++++.++.....+. ...-+..+..+++++..           .+  +..|+++|.+ |+...++....  |.+. + 
T Consensus       132 ~n~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~a-----------~p--~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  132 ANSDCTKLVGIEISRE-DWKPLTKWKGFREFYEA-----------RP--HCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             E-TTSSEEEEEEEEGG-G-----SHHHHHHHHHC----------------EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             eCCCccEEEEEEEeeh-hccCccccHHHHHHHhh-----------CC--CceEEEEECCCCceeEEEecCccccCcccCC
Confidence            5788888877654321 11111222334443332           22  6788999876 67665655432  2111 0 


Q ss_pred             -ceeEEEE-e-------CCEEEEeeCCCCeEEEEeCC
Q 047259          186 -FVTSAVE-F-------EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       186 -~~t~~~~-~-------~~~Lyv~~~~~~~i~~~~~~  213 (225)
                       .++.+.+ +       +-+||+.+..+..+..+...
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~  234 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR  234 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC
Confidence             1222222 1       23788887777766666544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.43  E-value=0.018  Score=33.48  Aligned_cols=42  Identities=14%  Similarity=0.033  Sum_probs=29.9

Q ss_pred             cCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           67 KDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        67 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      ||+++|||++...+.|..++..+.   .....+ ..+..|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i-~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATI-PVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC---eEEEEE-ECCCCCceEEeC
Confidence            678899999999999999998532   221112 134579998875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.42  E-value=0.37  Score=45.40  Aligned_cols=100  Identities=17%  Similarity=0.268  Sum_probs=68.6

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      -|++|+.|.|.+.-...                .=.|+.|+.++|++.-+..+...| .|+.++|++. +.++-++...|
T Consensus       440 cvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTV  502 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTV  502 (893)
T ss_pred             EEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceE
Confidence            46778888877764431                227888888889877777777666 7899999998 77888899998


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeec
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      .++++=. ..+..+++.  .....-++++.|+|+ |-|+...
T Consensus       503 RiW~if~-s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  503 RIWDIFS-SSGTVETLE--IRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             EEEEeec-cCceeeeEe--eccceeEEEEcCCCCeEEEEEec
Confidence            8888732 123444442  223345677777775 6666554

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.37  E-value=0.018  Score=34.04  Aligned_cols=40  Identities=15%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             CcEEEEcCCCCCCcchhhhhcccCCCCc-EEEEEeCCCCeEEE-EecCccccceeEEec
Q 047259           11 GSLYFTVSSKKYTPAEYYKDLVEGKPHG-QLLKYDPELEETTV-LHEGFYFANGVALSK   67 (225)
Q Consensus        11 G~iy~td~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~   67 (225)
                      |+||.||.+                 .. .|.+.+.+....+. +.+++..|+||++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            579999998                 33 77777776444444 457799999999975

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.37  E-value=0.39  Score=41.83  Aligned_cols=125  Identities=11%  Similarity=0.038  Sum_probs=70.9

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCC-CCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPG-GPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g-~Pd~i~~d~  113 (225)
                      ..|.++.+|..+|+..-..+ ......++++  ++.||++. .++.|+.++.+++   . ..+.. ...+ .-....+ .
T Consensus       249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG---~-~~W~~~~~~~~~~ssp~i-~  319 (377)
T TIGR03300       249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSG---S-ELWKNDELKYRQLTAPAV-V  319 (377)
T ss_pred             cCCEEEEEECCCCcEEEeec-cCCccCceEe--CCEEEEEC-CCCeEEEEECCCC---c-EEEccccccCCccccCEE-E
Confidence            36788999987775432222 2233444444  45699886 4679999998642   1 11211 1111 1112233 2


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEE
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE  192 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~  192 (225)
                      ++.+|+.+.                                     .+.|..+|++ |+++..+..+.+...   +..+.
T Consensus       320 g~~l~~~~~-------------------------------------~G~l~~~d~~tG~~~~~~~~~~~~~~---~sp~~  359 (377)
T TIGR03300       320 GGYLVVGDF-------------------------------------EGYLHWLSREDGSFVARLKTDGSGIA---SPPVV  359 (377)
T ss_pred             CCEEEEEeC-------------------------------------CCEEEEEECCCCCEEEEEEcCCCccc---cCCEE
Confidence            457777642                                     4578888885 999888876443211   22234


Q ss_pred             eCCEEEEeeCCCCeEEEE
Q 047259          193 FEDNLYMASIQSKFVGKL  210 (225)
Q Consensus       193 ~~~~Lyv~~~~~~~i~~~  210 (225)
                      .+++||+++. ++.|..|
T Consensus       360 ~~~~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       360 VGDGLLVQTR-DGDLYAF  376 (377)
T ss_pred             ECCEEEEEeC-CceEEEe
Confidence            5788999875 3556554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.23  E-value=0.63  Score=40.30  Aligned_cols=136  Identities=17%  Similarity=0.218  Sum_probs=86.5

Q ss_pred             cEEEEEeCCCCeEEEEe--cCc-cccce-eEEecCCC--EE-EEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259           38 GQLLKYDPELEETTVLH--EGF-YFANG-VALSKDEN--FV-VVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN  110 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~--~~~-~~pnG-i~~~~dg~--~L-yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~  110 (225)
                      ..||.||.+  ..+.+-  +.. ..|.| +|+++...  +| |=..+..+.|+.|+...  +.....+- -..+----++
T Consensus       106 e~IyIydI~--~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~-aH~~~lAala  180 (391)
T KOG2110|consen  106 ESIYIYDIK--DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTIN-AHKGPLAALA  180 (391)
T ss_pred             ccEEEEecc--cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEE-ecCCceeEEE
Confidence            458888875  334432  222 45665 57777654  33 44445678999998753  22222221 1234456899


Q ss_pred             ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEEC--CCCcEEEEEECCCCCccccee
Q 047259          111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVD--THGKIIMDFNDPNATYISFVT  188 (225)
Q Consensus       111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d--~~G~~~~~~~~p~g~~~~~~t  188 (225)
                      ++++|.+..+...                                    .|.|+|+=  ++|+.+..++  .|...-.+.
T Consensus       181 fs~~G~llATASe------------------------------------KGTVIRVf~v~~G~kl~eFR--RG~~~~~Iy  222 (391)
T KOG2110|consen  181 FSPDGTLLATASE------------------------------------KGTVIRVFSVPEGQKLYEFR--RGTYPVSIY  222 (391)
T ss_pred             ECCCCCEEEEecc------------------------------------CceEEEEEEcCCccEeeeee--CCceeeEEE
Confidence            9999999888776                                    56777743  6798877776  465333555


Q ss_pred             EEEEe-CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          189 SAVEF-EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       189 ~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      .++++ ++.+.-++.....|-+|++....
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            56664 56666667778888888887654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.20  E-value=0.3  Score=41.63  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             CCCCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           34 GKPHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        34 ~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      +-.+|+|..||..+..+..+.+....| ..++||+||+ ..++.+..+.|..+|+..
T Consensus        41 Gc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   41 GCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             eccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccC
Confidence            455899999998877666666665555 6899999998 668888889999999864

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.20  E-value=0.018  Score=34.04  Aligned_cols=40  Identities=15%  Similarity=0.045  Sum_probs=31.6

Q ss_pred             EEEEEeCCCC-EEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           71 FVVVCESWKF-RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        71 ~Lyv~~~~~~-~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .||++|...+ +|.+.+++|.   ..++++...-..|.||++|+
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGS---NRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTST---SEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCC---CeEEEEECCCCCcCEEEECC
Confidence            5999999999 9999999873   35555554445799999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.27  Score=39.65  Aligned_cols=118  Identities=11%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             cceeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEeccCC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChh
Q 047259           60 ANGVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIEHLP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPD  137 (225)
Q Consensus        60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~  137 (225)
                      -.|-.+..|++.|+.++- +..++.-++++- .....++-.++.| +.-+-+..- +|.+|.-.+.              
T Consensus       131 GeGWgLt~d~~~LimsdG-satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~--------------  194 (262)
T COG3823         131 GEGWGLTSDDKNLIMSDG-SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ--------------  194 (262)
T ss_pred             CcceeeecCCcceEeeCC-ceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee--------------
Confidence            467777777777877764 445555555541 1222222222222 122333333 4777776666              


Q ss_pred             HHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC--------CCCcccceeEEEE--eCCEEEEeeCCCCe
Q 047259          138 KWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP--------NATYISFVTSAVE--FEDNLYMASIQSKF  206 (225)
Q Consensus       138 ~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p--------~g~~~~~~t~~~~--~~~~Lyv~~~~~~~  206 (225)
                                            ..+|.|++|+ |+++..+...        ++..-.-..+++.  ..+++|++.-.-+.
T Consensus       195 ----------------------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~  252 (262)
T COG3823         195 ----------------------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPL  252 (262)
T ss_pred             ----------------------ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCce
Confidence                                  4589999997 8998887531        1211112333443  46799999998888


Q ss_pred             EEEEeCCCc
Q 047259          207 VGKLPLNTP  215 (225)
Q Consensus       207 i~~~~~~~~  215 (225)
                      +..+++.+.
T Consensus       253 lfEVk~~~a  261 (262)
T COG3823         253 LFEVKLDEA  261 (262)
T ss_pred             eEEEEecCC
Confidence            888887653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.15  E-value=0.29  Score=43.90  Aligned_cols=102  Identities=17%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--EEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF--RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .++|+++.++++...+++-...-...+|+|||+.|.++...++  .|+.+++++..   ...+. ...+.-.+-.+.+||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~Lt-~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRLT-NGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceecc-cCCccccCccCCCCC
Confidence            6799999887877777665555566999999999987776554  67777776532   22222 233333356677888


Q ss_pred             CE--EEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC
Q 047259          116 SF--WVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND  178 (225)
Q Consensus       116 ~l--~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~  178 (225)
                      +-  |+++-+.                                   ...|++++++|+-...+..
T Consensus       294 ~~ivf~Sdr~G-----------------------------------~p~I~~~~~~g~~~~riT~  323 (425)
T COG0823         294 SKIVFTSDRGG-----------------------------------RPQIYLYDLEGSQVTRLTF  323 (425)
T ss_pred             CEEEEEeCCCC-----------------------------------CcceEEECCCCCceeEeec
Confidence            73  3333331                                   3489999999876555544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.95  E-value=0.034  Score=32.19  Aligned_cols=41  Identities=27%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             CCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEe
Q 047259            9 SDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALS   66 (225)
Q Consensus         9 ~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~   66 (225)
                      ++| +||+++..                 .+.|..+|..+++..........|.+|+++
T Consensus         1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            345 59999876                 678999998777766556667889999875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.93  E-value=0.43  Score=41.69  Aligned_cols=134  Identities=14%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             CCcEEEEEeCCCCeEE--EEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC--CCCceE
Q 047259           36 PHGQLLKYDPELEETT--VLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG--GPDNIN  110 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~--~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g--~Pd~i~  110 (225)
                      ..|.|+.+|+++++..  ....+ ....++-.+..||+ +|+..... .++.++.+++   +. ++....++  .-.+-+
T Consensus        76 ~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g-~~y~ld~~~G---~~-~W~~~~~~~~~~~~~~  149 (370)
T COG1520          76 RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDG-KLYALDASTG---TL-VWSRNVGGSPYYASPP  149 (370)
T ss_pred             CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccc-eEEEEECCCC---cE-EEEEecCCCeEEecCc
Confidence            3678999998877632  22222 23445544445887 99988765 8888988421   11 22212222  111224


Q ss_pred             ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeE
Q 047259          111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTS  189 (225)
Q Consensus       111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~  189 (225)
                      +-.+|.+|+.. .                                    .+.+..++++ |+..-.+..+.+.-......
T Consensus       150 v~~~~~v~~~s-~------------------------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~  192 (370)
T COG1520         150 VVGDGTVYVGT-D------------------------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGS  192 (370)
T ss_pred             EEcCcEEEEec-C------------------------------------CCeEEEEEccCCcEEEEEecCCccccccccC
Confidence            44567777765 2                                    4578888887 88876665533100111111


Q ss_pred             EEEeCCEEEEeeCC-CCeEEEEeC
Q 047259          190 AVEFEDNLYMASIQ-SKFVGKLPL  212 (225)
Q Consensus       190 ~~~~~~~Lyv~~~~-~~~i~~~~~  212 (225)
                      ....++.+|++... +.++..+++
T Consensus       193 ~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         193 PAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             ceeecceEEEecCCCcceEEEEEc
Confidence            12567888888664 446777776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=95.92  E-value=0.8  Score=37.90  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             CCCcEEEEEeCCCCeE--EEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEec--cCCCCCCce
Q 047259           35 KPHGQLLKYDPELEET--TVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIE--HLPGGPDNI  109 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~--~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~--~~~g~Pd~i  109 (225)
                      ..+|+|..+|..+...  +++.+....-..+++.|||+ ..++...++..+..++-+. .....+....  .-.+.--.+
T Consensus       143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE
Confidence            3468888899765533  33456666778999999998 5566667778888877532 1222211111  112334567


Q ss_pred             EECCCCCEEEEeec
Q 047259          110 NLAPDGSFWVALIK  123 (225)
Q Consensus       110 ~~d~~G~l~v~~~~  123 (225)
                      .+.||+.+.++...
T Consensus       222 ~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  222 LLSPDVKYLATCSS  235 (311)
T ss_pred             EECCCCcEEEeecC
Confidence            88888888888766

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.90  E-value=0.42  Score=42.88  Aligned_cols=85  Identities=19%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             CCCCc-EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           34 GKPHG-QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        34 ~~~~g-~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      +...| .|..||.++++++....++..-..+.+++||+.+.+++ .+..||.++++.   ++++..-....++--++++.
T Consensus       377 gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididn---gnv~~idkS~~~lItdf~~~  452 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDN---GNVRLIDKSEYGLITDFDWH  452 (668)
T ss_pred             eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecC---CCeeEecccccceeEEEEEc
Confidence            45566 67888888888899889999999999999999776665 457999999985   34544322234556677777


Q ss_pred             CCCCEEEEee
Q 047259          113 PDGSFWVALI  122 (225)
Q Consensus       113 ~~G~l~v~~~  122 (225)
                      +++++..=.+
T Consensus       453 ~nsr~iAYaf  462 (668)
T COG4946         453 PNSRWIAYAF  462 (668)
T ss_pred             CCceeEEEec
Confidence            7766544333

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.63  E-value=0.28  Score=41.70  Aligned_cols=134  Identities=12%  Similarity=0.029  Sum_probs=75.2

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCC-C--CCc-eeEEecc-----CCCCCCceEECCCCCEEEEeecCC
Q 047259           55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGP-R--QGR-LESFIEH-----LPGGPDNINLAPDGSFWVALIKMN  125 (225)
Q Consensus        55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~--~~~-~~~~~~~-----~~g~Pd~i~~d~~G~l~v~~~~~~  125 (225)
                      ..+..|-||+++|.+ .+||++.+++....|+.+.. .  ... ..+-+..     .++.|.|+.+.....+-|+.....
T Consensus        20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            457889999999987 59999999999999987621 1  111 1121111     134689999987655545543311


Q ss_pred             chhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEE------EEEEC-CCCCcccceeEEE-EeCCEE
Q 047259          126 QTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKII------MDFND-PNATYISFVTSAV-EFEDNL  197 (225)
Q Consensus       126 ~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~------~~~~~-p~g~~~~~~t~~~-~~~~~L  197 (225)
                      . .-.||.                     ..+  .+.|....|.-...      .++.. ..+.+.++...+. ..+.+|
T Consensus        99 ~-~a~Fif---------------------~tE--dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L  154 (336)
T TIGR03118        99 G-PSRFLF---------------------VTE--DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL  154 (336)
T ss_pred             c-ceeEEE---------------------EeC--CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE
Confidence            0 000100                     011  44554444431111      12221 2344343333222 136899


Q ss_pred             EEeeCCCCeEEEEeCC
Q 047259          198 YMASIQSKFVGKLPLN  213 (225)
Q Consensus       198 yv~~~~~~~i~~~~~~  213 (225)
                      |.+++.+++|-+|+-.
T Consensus       155 YaadF~~g~IDVFd~~  170 (336)
T TIGR03118       155 YAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEeccCCCceEEecCc
Confidence            9999999999999543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.63  Score=37.58  Aligned_cols=80  Identities=11%  Similarity=0.035  Sum_probs=50.2

Q ss_pred             CcEEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTV---LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ...|.++|..+|+...   +..+-.+..||.-..|  .+|.-....+.-++|+.++  ......|.  .+|.-=|++.|.
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd--~~y~LTw~egvaf~~d~~t--~~~lg~~~--y~GeGWgLt~d~  140 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD--YFYQLTWKEGVAFKYDADT--LEELGRFS--YEGEGWGLTSDD  140 (262)
T ss_pred             cceeEEEeccCceEEEEeecCCccccccceeeccc--eEEEEEeccceeEEEChHH--hhhhcccc--cCCcceeeecCC
Confidence            5678888887665432   2224457789888754  7999999888888888764  11221222  223223666665


Q ss_pred             CCCEEEEeec
Q 047259          114 DGSFWVALIK  123 (225)
Q Consensus       114 ~G~l~v~~~~  123 (225)
                      + +||.++..
T Consensus       141 ~-~LimsdGs  149 (262)
T COG3823         141 K-NLIMSDGS  149 (262)
T ss_pred             c-ceEeeCCc
Confidence            4 58888765

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.57  E-value=1.6  Score=40.93  Aligned_cols=72  Identities=19%  Similarity=0.136  Sum_probs=41.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-----------CCEEEEEEecCCCCCceeEEeccCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW-----------KFRCRRYWLKGPRQGRLESFIEHLPGG  105 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~g~  105 (225)
                      ..+||.++.. +..+.+..+.. -....|+|||+.||+...+           .++|+.+++++.   ..+.   ...+.
T Consensus       378 ~s~Lwv~~~g-g~~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---e~~~---~~~g~  449 (591)
T PRK13616        378 ASSLWVGPLG-GVAVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---AVAS---RVPGP  449 (591)
T ss_pred             ceEEEEEeCC-CcceeeecCCC-CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---hhhh---ccCCC
Confidence            5678888764 44455544432 5678999998878776432           234444444321   1111   12345


Q ss_pred             CCceEECCCCC
Q 047259          106 PDNINLAPDGS  116 (225)
Q Consensus       106 Pd~i~~d~~G~  116 (225)
                      ...+.+.+||.
T Consensus       450 Issl~wSpDG~  460 (591)
T PRK13616        450 ISELQLSRDGV  460 (591)
T ss_pred             cCeEEECCCCC
Confidence            77888999986

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.50  E-value=1.6  Score=38.50  Aligned_cols=143  Identities=15%  Similarity=0.059  Sum_probs=78.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC----------CCEEEEEEecCCCCCceeEEeccCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFA--NGVALSKDENFVVVCESW----------KFRCRRYWLKGPRQGRLESFIEHLPG  104 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~p--nGi~~~~dg~~Lyv~~~~----------~~~I~~~~~~~~~~~~~~~~~~~~~g  104 (225)
                      .-.|+.+|..+|+..  .+.+..+  .+++|.+|++.+|.+...          ..+|+++.+.+.......+|-...+.
T Consensus       149 ~~~l~v~Dl~tg~~l--~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~  226 (414)
T PF02897_consen  149 WYTLRVFDLETGKFL--PDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP  226 (414)
T ss_dssp             EEEEEEEETTTTEEE--EEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT
T ss_pred             eEEEEEEECCCCcCc--CCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC
Confidence            346888998877533  2333333  349999999888777643          44688888754322223344321111


Q ss_pred             C-CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC------cEEEEEE
Q 047259          105 G-PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG------KIIMDFN  177 (225)
Q Consensus       105 ~-Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G------~~~~~~~  177 (225)
                      . --++..+++|++.+.......                                +...|+.++.+.      +......
T Consensus       227 ~~~~~~~~s~d~~~l~i~~~~~~--------------------------------~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  227 FWFVSVSRSKDGRYLFISSSSGT--------------------------------SESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             TSEEEEEE-TTSSEEEEEEESSS--------------------------------SEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             cEEEEEEecCcccEEEEEEEccc--------------------------------cCCeEEEEeccccCCCcCCcEEEeC
Confidence            2 236788899986554433211                                036777777653      3443333


Q ss_pred             CCCCCcccceeEEEEeCCEEEEee---CCCCeEEEEeCCCccc
Q 047259          178 DPNATYISFVTSAVEFEDNLYMAS---IQSKFVGKLPLNTPEA  217 (225)
Q Consensus       178 ~p~g~~~~~~t~~~~~~~~Lyv~~---~~~~~i~~~~~~~~~~  217 (225)
                      .-++.    ...+...++.+|+.+   ....+|.++++.....
T Consensus       275 ~~~~~----~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~  313 (414)
T PF02897_consen  275 REDGV----EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP  313 (414)
T ss_dssp             SSSS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred             CCCce----EEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence            22221    223334588888855   4457888888887763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.40  E-value=1.3  Score=38.64  Aligned_cols=49  Identities=16%  Similarity=0.126  Sum_probs=30.6

Q ss_pred             CcEEEEEeCCCCeEEE--EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTV--LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~--~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .|.|+.+|..+|+..=  -... ....+++.+  ++.+|+... ++.|+.++.++
T Consensus        74 ~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v~--~~~v~v~~~-~g~l~ald~~t  124 (377)
T TIGR03300        74 DGTVVALDAETGKRLWRVDLDE-RLSGGVGAD--GGLVFVGTE-KGEVIALDAED  124 (377)
T ss_pred             CCeEEEEEccCCcEeeeecCCC-CcccceEEc--CCEEEEEcC-CCEEEEEECCC
Confidence            5789999987776431  1111 222345554  456888764 57999999854

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=95.31  E-value=1.8  Score=37.74  Aligned_cols=133  Identities=14%  Similarity=0.138  Sum_probs=79.4

Q ss_pred             ccceeEEecCCCEEEEEeCCCCEEEEEEecCC------CCCcee--EEecc-----------CCCCCCceEECCCCCEEE
Q 047259           59 FANGVALSKDENFVVVCESWKFRCRRYWLKGP------RQGRLE--SFIEH-----------LPGGPDNINLAPDGSFWV  119 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~~~--~~~~~-----------~~g~Pd~i~~d~~G~l~v  119 (225)
                      .-.+-+|+|+|++|.++-++.-+|++..-++.      ..+.++  ..++-           ..|.+.-|++|+.|...+
T Consensus       282 rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa  361 (445)
T KOG2139|consen  282 RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA  361 (445)
T ss_pred             ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence            67788999999999999999999999876532      011112  22220           124578899999999888


Q ss_pred             EeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEE--C-CCCCcccceeEE-EEeCC
Q 047259          120 ALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN--D-PNATYISFVTSA-VEFED  195 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~--~-p~g~~~~~~t~~-~~~~~  195 (225)
                      +.+...+-+..+                            ..-|.++|..-.....+.  . -.|.....++.- ...++
T Consensus       362 v~fKg~~~v~~~----------------------------k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g  413 (445)
T KOG2139|consen  362 VIFKGQSFVLLC----------------------------KLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG  413 (445)
T ss_pred             EEEcCCchhhhh----------------------------hhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence            887743211110                            223455554433222222  1 112211112211 12468


Q ss_pred             EEEEeeCCCCeEEEEeCCCccccc
Q 047259          196 NLYMASIQSKFVGKLPLNTPEAEL  219 (225)
Q Consensus       196 ~Lyv~~~~~~~i~~~~~~~~~~~~  219 (225)
                      .|....|..+++.+|++.--..++
T Consensus       414 ~lLsiaWsTGriq~ypl~f~~~~~  437 (445)
T KOG2139|consen  414 RLLSIAWSTGRIQRYPLTFQCFRD  437 (445)
T ss_pred             cEEEEEeccCceEeeeeEEEeecc
Confidence            888889999999999987665544

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=95.16  E-value=0.85  Score=44.67  Aligned_cols=157  Identities=11%  Similarity=0.154  Sum_probs=101.5

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-C
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW-K   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~-~   79 (225)
                      +.+++++- .+++|+||.+..               ...+..++.. .+..++...+..|..++++|-..++|+++++ .
T Consensus       482 ~~~lavD~~~~~~y~tDe~~~---------------~i~v~~~~g~-~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~  545 (877)
T KOG1215|consen  482 PEGLAVDWIGDNIYWTDEGNC---------------LIEVADLDGS-SRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP  545 (877)
T ss_pred             cCcEEEEeccCCceecccCCc---------------eeEEEEccCC-ceeEEEecCCCCccceeeccccCeeEEecCCCC
Confidence            45677777 347999988721               2333444432 2223334556899999999999999999998 4


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      .+|.|-.+++.   .........-..|+|++.|- +.++|.++...                                  
T Consensus       546 ~~i~ra~~dg~---~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~----------------------------------  588 (877)
T KOG1215|consen  546 PRIERASLDGS---ERAVLVTNGILWPNGLTIDYETDRLYWADAKL----------------------------------  588 (877)
T ss_pred             chhhhhcCCCC---CceEEEeCCccCCCcceEEeecceeEEEcccC----------------------------------
Confidence            46777777652   23333322235799999996 45788888662                                  


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                       ...+.+.+-+|+..+ +.....  .+.+-.+....+++|-+++....+-+......
T Consensus       589 -~~~i~~~~~~g~~r~-~~~~~~--~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~  641 (877)
T KOG1215|consen  589 -DYTIESANMDGQNRR-VVDSED--LPHPFGLSVFEDYIYWTDWSNRAISRAEKHKG  641 (877)
T ss_pred             -CcceeeeecCCCceE-Eecccc--CCCceEEEEecceeEEeeccccceEeeecccC
Confidence             336788888887765 322121  33445556678899999988886666555444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.07  E-value=0.17  Score=45.37  Aligned_cols=83  Identities=20%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK--FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ..-.||.+|..++....+.+....-..-.|+|||+.++++....  -+|+++++++.   ..+.... ..+....-.+.+
T Consensus       260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~---~~~riT~-~~~~~~~p~~Sp  335 (425)
T COG0823         260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS---QVTRLTF-SGGGNSNPVWSP  335 (425)
T ss_pred             CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC---ceeEeec-cCCCCcCccCCC
Confidence            35578999988676666666666666889999999886655433  37888888764   2222221 222334677788


Q ss_pred             CCCEEEEee
Q 047259          114 DGSFWVALI  122 (225)
Q Consensus       114 ~G~l~v~~~  122 (225)
                      ||+..+-..
T Consensus       336 dG~~i~~~~  344 (425)
T COG0823         336 DGDKIVFES  344 (425)
T ss_pred             CCCEEEEEe
Confidence            888766665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.06  E-value=2.1  Score=37.70  Aligned_cols=132  Identities=11%  Similarity=0.088  Sum_probs=66.2

Q ss_pred             CcEEEEEeCCCCeEE--EEecC---c-------cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC
Q 047259           37 HGQLLKYDPELEETT--VLHEG---F-------YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG  104 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~--~~~~~---~-------~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g  104 (225)
                      .|.|+.+|.++|+..  .-...   .       ....+++.+.  +.+|+.. ..+.|+.++.+++..    .+....++
T Consensus        78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~v~v~~-~~g~l~ald~~tG~~----~W~~~~~~  150 (394)
T PRK11138         78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG--GKVYIGS-EKGQVYALNAEDGEV----AWQTKVAG  150 (394)
T ss_pred             CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC--CEEEEEc-CCCEEEEEECCCCCC----cccccCCC
Confidence            467888887767532  11111   0       1113455543  4588876 457899999864211    12111222


Q ss_pred             CC-CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCC
Q 047259          105 GP-DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNAT  182 (225)
Q Consensus       105 ~P-d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~  182 (225)
                      .. ....+. +|.+|+...                                     .+.+..+|+ +|+++-.+......
T Consensus       151 ~~~ssP~v~-~~~v~v~~~-------------------------------------~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        151 EALSRPVVS-DGLVLVHTS-------------------------------------NGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             ceecCCEEE-CCEEEEECC-------------------------------------CCEEEEEEccCCCEeeeecCCCCc
Confidence            11 111222 467777432                                     357888887 48887776542110


Q ss_pred             c-ccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          183 Y-ISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       183 ~-~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      . ....+.-+..++.+|++.. .+.+..+++.+
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~-~g~v~a~d~~~  224 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGD-NGRVSAVLMEQ  224 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcC-CCEEEEEEccC
Confidence            0 0011111234667777653 45666665543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=95.03  E-value=0.27  Score=43.88  Aligned_cols=136  Identities=12%  Similarity=0.126  Sum_probs=88.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec--cCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE--HLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d~~  114 (225)
                      ...|-.+|.++|++..-..-...|+-+-+.||+.-+|++-..+.+|..+|+..+   .  +..+  ..-+.-..|.+-++
T Consensus       279 D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---k--vvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---K--VVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---H--HHHHHHhhhhheeeeEEccC
Confidence            567778898899888777777889999999999668999999999999999742   1  1111  12234577888888


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeC
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFE  194 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~  194 (225)
                      |+-+++.....                                  .-+|+..+. +..+..+..+.-  ..-+......+
T Consensus       354 g~rFissSDdk----------------------------------s~riWe~~~-~v~ik~i~~~~~--hsmP~~~~~P~  396 (503)
T KOG0282|consen  354 GRRFISSSDDK----------------------------------SVRIWENRI-PVPIKNIADPEM--HTMPCLTLHPN  396 (503)
T ss_pred             CceEeeeccCc----------------------------------cEEEEEcCC-Cccchhhcchhh--ccCcceecCCC
Confidence            98888877621                                  223443331 222233333221  22233233346


Q ss_pred             CEEEEeeCCCCeEEEEeCCC
Q 047259          195 DNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       195 ~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      +..+.+....++|+.|....
T Consensus       397 ~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  397 GKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             CCeehhhccCceEEEEeccc
Confidence            67778888888888887543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=95.03  E-value=1.1  Score=39.41  Aligned_cols=84  Identities=8%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             CCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec---cCCCCCCceE
Q 047259           34 GKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE---HLPGGPDNIN  110 (225)
Q Consensus        34 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~~g~Pd~i~  110 (225)
                      ..+...|..++..+|+.-+....-..-..+.|+-||. ++++.....+|..+++..+   .  +..+   +.+..|....
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~---~--~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG---T--VVSEGVAHEGAKPARAI  223 (472)
T ss_pred             ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC---c--EeeecccccCCCcceeE
Confidence            3556678888887776555445445567899999997 8899999999999998642   1  1221   2333566667


Q ss_pred             ECCCCCEEEEeec
Q 047259          111 LAPDGSFWVALIK  123 (225)
Q Consensus       111 ~d~~G~l~v~~~~  123 (225)
                      +-.+|.+..+.+.
T Consensus       224 fl~~g~i~tTGfs  236 (472)
T KOG0303|consen  224 FLASGKIFTTGFS  236 (472)
T ss_pred             EeccCceeeeccc
Confidence            7778887777776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=95.03  E-value=0.26  Score=39.20  Aligned_cols=60  Identities=18%  Similarity=0.231  Sum_probs=40.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      .|.|...|+|++.++-..              +...|.|..||..+.+  .+. ........++|||||+++..+.+
T Consensus       103 ~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~--~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKK--KISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             ceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCE--EeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            467888899887666432              1236888899986433  332 23345789999999997766654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.99  E-value=0.12  Score=46.11  Aligned_cols=69  Identities=23%  Similarity=0.366  Sum_probs=36.7

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCC--ceeEEecc--------------CCCCCCceEECCCC-CEEEE
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQG--RLESFIEH--------------LPGGPDNINLAPDG-SFWVA  120 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~~--------------~~g~Pd~i~~d~~G-~l~v~  120 (225)
                      ..+..|.+|.|.++|||+.+..+.|++||+.+....  .-++++.+              +.|.|.=+.+..|| +|||+
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            346889999999999999999999999999753111  11233321              22457888999999 59999


Q ss_pred             eecCCc
Q 047259          121 LIKMNQ  126 (225)
Q Consensus       121 ~~~~~~  126 (225)
                      ..-...
T Consensus       392 nSLys~  397 (461)
T PF05694_consen  392 NSLYSA  397 (461)
T ss_dssp             ----HH
T ss_pred             eecccc
Confidence            877543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.73  E-value=1.3  Score=40.83  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=27.1

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ  203 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~  203 (225)
                      .+.+..+|.+ |+++-.+..+.+- ...+... ..+|++||....
T Consensus       481 ~G~l~a~D~~TGe~lw~~~~g~~~-~a~P~ty-~~~G~qYv~~~~  523 (527)
T TIGR03075       481 EGYFKAFDAKTGEELWKFKTGSGI-VGPPVTY-EQDGKQYVAVLS  523 (527)
T ss_pred             CCeEEEEECCCCCEeEEEeCCCCc-eecCEEE-EeCCEEEEEEEe
Confidence            5678888875 9998888875332 2222221 358999998643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.70  E-value=0.41  Score=46.36  Aligned_cols=103  Identities=17%  Similarity=0.121  Sum_probs=66.1

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      |+..+|++.+.++.+-                 .+.|..|+..+-+... +-.....+-|+.|||=|+ -+-+.+.++.|
T Consensus       134 Dv~Wsp~~~~lvS~s~-----------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrti  195 (942)
T KOG0973|consen  134 DVNWSPDDSLLVSVSL-----------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTL  195 (942)
T ss_pred             eeccCCCccEEEEecc-----------------cceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCCceE
Confidence            6777888877777665                 6789999987554333 345567899999999998 45666666666


Q ss_pred             EEEEecCCCCCce--eEEeccCCC--CCCceEECCCCCEEEEeecCC
Q 047259           83 RRYWLKGPRQGRL--ESFIEHLPG--GPDNINLAPDGSFWVALIKMN  125 (225)
Q Consensus        83 ~~~~~~~~~~~~~--~~~~~~~~g--~Pd~i~~d~~G~l~v~~~~~~  125 (225)
                      ..++.........  +.|- ..++  +=..+.+.|||...++.++.+
T Consensus       196 kvwrt~dw~i~k~It~pf~-~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  196 KVWRTSDWGIEKSITKPFE-ESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             EEEEcccceeeEeeccchh-hCCCcceeeecccCCCcCeecchhhcc
Confidence            6665433111110  1111 1222  235677889999998888754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.51  E-value=3  Score=37.38  Aligned_cols=85  Identities=9%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             CCcEEEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ++-+||.+|.+....-.-+.-..+| .-.+|.|+|....++.....-++.||+......+.........-.-..+.+.++
T Consensus       235 ~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd  314 (514)
T KOG2055|consen  235 GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD  314 (514)
T ss_pred             CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC
Confidence            4557888886533211111112344 457888999866666666778899999753222222111111112357788888


Q ss_pred             CCEEEE
Q 047259          115 GSFWVA  120 (225)
Q Consensus       115 G~l~v~  120 (225)
                      +++.+.
T Consensus       315 ~~fia~  320 (514)
T KOG2055|consen  315 SNFIAI  320 (514)
T ss_pred             CCeEEE
Confidence            884443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.47  E-value=0.34  Score=44.43  Aligned_cols=92  Identities=14%  Similarity=0.151  Sum_probs=57.7

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-Cc-cccceeEEecCCCEEEEEeCCCCE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GF-YFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~-~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      .+..+.+|++|+...-                   -+++||..+++.-.+.. .. .--|-+..+-+|+ |||...  .-
T Consensus       169 aLv~D~~g~lWvgT~d-------------------GL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd--qG  226 (671)
T COG3292         169 ALVFDANGRLWVGTPD-------------------GLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD--QG  226 (671)
T ss_pred             eeeeeccCcEEEecCC-------------------cceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec--cc
Confidence            3566777888887553                   35788876665444332 22 3456778888876 888875  46


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCC----ceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPD----NINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd----~i~~d~~G~l~v~~~~  123 (225)
                      |++++..|.....      ..+..|+    -+.-|++|++|++.-.
T Consensus       227 v~~~e~~G~~~sn------~~~~lp~~~I~ll~qD~qG~lWiGTen  266 (671)
T COG3292         227 VYLQEAEGWRASN------WGPMLPSGNILLLVQDAQGELWIGTEN  266 (671)
T ss_pred             eEEEchhhccccc------cCCCCcchheeeeecccCCCEEEeecc
Confidence            7888776531111      1233444    3567889999998754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.41  E-value=2.9  Score=35.77  Aligned_cols=29  Identities=24%  Similarity=0.149  Sum_probs=20.9

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLK   88 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~   88 (225)
                      ..+.-+.|+|.|.+.+|.-+  ++|-.|.++
T Consensus       169 ~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d  197 (362)
T KOG0294|consen  169 NKATLVSWSPQGDHFVVSGR--NKIDIYQLD  197 (362)
T ss_pred             CcceeeEEcCCCCEEEEEec--cEEEEEecc
Confidence            34556999999987777654  577777665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.35  E-value=0.11  Score=46.33  Aligned_cols=59  Identities=25%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEEEe----cC---------------cccc
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTVLH----EG---------------FYFA   60 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~----~~---------------~~~p   60 (225)
                      +-|+.++-|++ |||++..                 +|.|-.||..+ ...+++.    .+               ...|
T Consensus       314 itDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP  376 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP  376 (461)
T ss_dssp             ---EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred             eEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence            46888999886 9999887                 67777777532 2222211    11               1368


Q ss_pred             ceeEEecCCCEEEEEeC
Q 047259           61 NGVALSKDENFVVVCES   77 (225)
Q Consensus        61 nGi~~~~dg~~Lyv~~~   77 (225)
                      +-|.+|-||++|||+.+
T Consensus       377 qMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  377 QMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             --EEE-TTSSEEEEE--
T ss_pred             CeEEEccCCeEEEEEee
Confidence            99999999999999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.32  E-value=1.1  Score=38.85  Aligned_cols=99  Identities=19%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEE
Q 047259            5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCR   83 (225)
Q Consensus         5 v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~   83 (225)
                      |...+||.+++|-+.                ....|..+|++++....+. -++..-.-+-|||||+.||.+..  .++.
T Consensus       201 mqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~--davf  262 (445)
T KOG2139|consen  201 MQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC--DAVF  262 (445)
T ss_pred             EEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc--ccee
Confidence            445556666666543                2567888888877766655 45566667899999996665554  2556


Q ss_pred             EEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeec
Q 047259           84 RYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      |+.-... .-..+.+. ..+|.-.+-+.++.|+ |..+..+
T Consensus       263 rlw~e~q-~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  263 RLWQENQ-SWTKERWI-LGSGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             eeehhcc-cceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence            6552211 11122232 2445667788888886 3334333

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=94.31  E-value=2.9  Score=35.42  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC-CCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL-PGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~-~g~Pd~i~~d~~  114 (225)
                      ...-..+|..++...+.. ....--|.+.|.|+|. -|++-+.++....||+..+  -+..+|.... -..-..+++...
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEccc
Confidence            445566676656555544 4456789999999996 8899999999999999742  2333443211 123468899999


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      |+|..+...
T Consensus       285 GRlLfagy~  293 (343)
T KOG0286|consen  285 GRLLFAGYD  293 (343)
T ss_pred             ccEEEeeec
Confidence            999998765

>PRK10115 protease 2; Provisional

Probab=94.28  E-value=5.2  Score=38.23  Aligned_cols=52  Identities=10%  Similarity=-0.006  Sum_probs=32.6

Q ss_pred             CcEEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeC-----CCCEEEEEEecCC
Q 047259           37 HGQLLKYDPELEETT-VLHEGFYFANGVALSKDENFVVVCES-----WKFRCRRYWLKGP   90 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~-~~~~~~~~pnGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~~   90 (225)
                      .-.|+.+|..+|+.. ....+..  .+++|++|++.||++..     ....|+++++.++
T Consensus       152 ~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~  209 (686)
T PRK10115        152 QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP  209 (686)
T ss_pred             EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence            345777777666411 1112222  56999999998877643     2368889888653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=94.17  E-value=4.4  Score=36.95  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=54.3

Q ss_pred             CCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      -.|.|..|+..+|....+.  ..-..-.+++.+..+. | ++-...+.|.++++.+.......++  .++..|-++++.+
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~-~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav~~  415 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-L-FTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKGLAVLS  415 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeecCCCc-E-EEEecCCeEEEEecccCccccccee--ecCCCceeEEEcC
Confidence            3789999997766655543  2234667888887554 5 4555678999998865322222221  2455799999999


Q ss_pred             CCCEEEEeec
Q 047259          114 DGSFWVALIK  123 (225)
Q Consensus       114 ~G~l~v~~~~  123 (225)
                      +|.+-+....
T Consensus       416 d~~~avv~~~  425 (603)
T KOG0318|consen  416 DGGTAVVACI  425 (603)
T ss_pred             CCCEEEEEec
Confidence            9865444433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.90  E-value=3.6  Score=34.96  Aligned_cols=160  Identities=14%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-E-ecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-L-HEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ++...|+-+-.|+....                ...|..++.+ |++-. + .+++.-|.+|.+-.+|+ .-+++...++
T Consensus        90 ~LTynp~~rtLFav~n~----------------p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~  151 (316)
T COG3204          90 SLTYNPDTRTLFAVTNK----------------PAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRA  151 (316)
T ss_pred             ceeeCCCcceEEEecCC----------------CceEEEEecC-CceEEEecccccCChhHeEEecCCE-EEEEehhcce
Confidence            56677776544444431                3467777775 55433 2 36788899999999886 6677778899


Q ss_pred             EEEEEecCC-C---CCceeEEeccCCC---CCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           82 CRRYWLKGP-R---QGRLESFIEHLPG---GPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        82 I~~~~~~~~-~---~~~~~~~~~~~~g---~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      ++.+.++.. .   .....+-.+....   .=.|++.|+. +++|++--..                             
T Consensus       152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-----------------------------  202 (316)
T COG3204         152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-----------------------------  202 (316)
T ss_pred             EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-----------------------------
Confidence            999888632 0   1111111111111   2368999986 4688876431                             


Q ss_pred             cCCCCcceEEEEECCC--CcEEEEEECCCCC---cccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          154 PLGNDAGARIVKVDTH--GKIIMDFNDPNAT---YISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~--G~~~~~~~~p~g~---~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                            +..|..++..  .-.+....+|...   .+...|++..+  .+.|+|=+..+..+..+++.++.
T Consensus       203 ------P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         203 ------PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             ------CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence                  3355555421  1111111222111   13345555554  58888888888888888888774

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.83  E-value=2.4  Score=38.69  Aligned_cols=43  Identities=16%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQS  204 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~  204 (225)
                      .+.+..+|.+ |+++-.++.+.+- ...+. +...++++||+....
T Consensus       415 dG~l~ald~~tG~~lW~~~~~~~~-~a~P~-~~~~~g~~yv~~~~g  458 (488)
T cd00216         415 DGYFRAFDATTGKELWKFRTPSGI-QATPM-TYEVNGKQYVGVMVG  458 (488)
T ss_pred             CCeEEEEECCCCceeeEEECCCCc-eEcCE-EEEeCCEEEEEEEec
Confidence            4678889975 9998888875432 22222 124588999998655

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=93.66  E-value=4  Score=37.91  Aligned_cols=137  Identities=9%  Similarity=0.074  Sum_probs=72.0

Q ss_pred             CcEEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCC-----------------------CCEEEEEEecCC
Q 047259           37 HGQLLKYDPELEETTVLHEG---FYFANGVALSKDENFVVVCESW-----------------------KFRCRRYWLKGP   90 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~~Lyv~~~~-----------------------~~~I~~~~~~~~   90 (225)
                      ...+.+||+.+++|+.+..-   .......++  +| .|||.--.                       .+.+.+|++..+
T Consensus       366 ~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td  442 (557)
T PHA02713        366 ERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN  442 (557)
T ss_pred             CceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCC
Confidence            34689999988888875431   112222333  34 59986422                       246888988653


Q ss_pred             CCCceeEEeccCCCC-CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC
Q 047259           91 RQGRLESFIEHLPGG-PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH  169 (225)
Q Consensus        91 ~~~~~~~~~~~~~g~-Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~  169 (225)
                         .++......... .-+++ .-+|.|||........                            .  ....|.++||+
T Consensus       443 ---~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~----------------------------~--~~~~ve~Ydp~  488 (557)
T PHA02713        443 ---IWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEK----------------------------N--VKTCIFRYNTN  488 (557)
T ss_pred             ---eEeecCCCCcccccCcEE-EECCEEEEEeCCCCCC----------------------------c--cceeEEEecCC
Confidence               333322211111 11222 3357999986531100                            0  02467899998


Q ss_pred             C--cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCC--eEEEEeCC
Q 047259          170 G--KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSK--FVGKLPLN  213 (225)
Q Consensus       170 G--~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~--~i~~~~~~  213 (225)
                      .  ++...-..|...   ..-.++..+++||+..=..+  .+-+|+..
T Consensus       489 ~~~~W~~~~~m~~~r---~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        489 TYNGWELITTTESRL---SALHTILHDNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             CCCCeeEccccCccc---ccceeEEECCEEEEEeeecceeehhhcCcc
Confidence            5  676544444322   12334556899999753333  34444443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=93.63  E-value=2.7  Score=35.93  Aligned_cols=69  Identities=13%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             EEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           52 VLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        52 ~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .+.+...--|-+.|.|... +.++.+..+.|..||..... .....+|.+..  .-..|.+-|.|.+.++...
T Consensus       167 TlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefllvgTd  236 (430)
T KOG0640|consen  167 TLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFLLVGTD  236 (430)
T ss_pred             ehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceEEEecC
Confidence            3445555678999999876 88999999999999986321 12223443221  2368889999987777655

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=93.61  E-value=3.8  Score=34.27  Aligned_cols=83  Identities=19%  Similarity=0.273  Sum_probs=53.8

Q ss_pred             EEEEEeCCCCeEEEEe-------cCccccceeEEecCCC----EEEEEeCCCCEEEEEEecC--C-CCCce--eEEeccC
Q 047259           39 QLLKYDPELEETTVLH-------EGFYFANGVALSKDEN----FVVVCESWKFRCRRYWLKG--P-RQGRL--ESFIEHL  102 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~-------~~~~~pnGi~~~~dg~----~Lyv~~~~~~~I~~~~~~~--~-~~~~~--~~~~~~~  102 (225)
                      .+|.+|++.+.++-+.       +..+.|.|+++..+.+    ++||+.. .+-|..|.+-.  + ..+..  +.|-  .
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~fk--~  203 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQFK--I  203 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEeee--c
Confidence            4688888766666543       3456789999987654    4555554 48898998752  1 22222  2221  4


Q ss_pred             CCCCCceEECC-CCCEEEEeecC
Q 047259          103 PGGPDNINLAP-DGSFWVALIKM  124 (225)
Q Consensus       103 ~g~Pd~i~~d~-~G~l~v~~~~~  124 (225)
                      +....||..|. .|.||++.-..
T Consensus       204 ~tQTEG~VaDdEtG~LYIaeEdv  226 (364)
T COG4247         204 PTQTEGMVADDETGFLYIAEEDV  226 (364)
T ss_pred             CCcccceeeccccceEEEeeccc
Confidence            55678998886 48999997663

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.41  E-value=0.91  Score=39.98  Aligned_cols=62  Identities=19%  Similarity=0.387  Sum_probs=42.7

Q ss_pred             hhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCC-CEEEEEeCC-----CCEEEEEEecC
Q 047259           28 YKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDE-NFVVVCESW-----KFRCRRYWLKG   89 (225)
Q Consensus        28 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg-~~Lyv~~~~-----~~~I~~~~~~~   89 (225)
                      +.++++..+..+|+++|.++|+.+.+.+.-.+-+-+.++|-. ..|-+|..+     ..|||.++.++
T Consensus       158 f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  158 FREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             HHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             HHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence            456777889999999999999999998888888889999843 455566554     35999999876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=93.25  E-value=5.2  Score=35.44  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      ++++-+||.+..|-..               ...|+||=+  .+|+.....+ ....-.+++|+|+| +...+-+..+.+
T Consensus       308 ~iaf~~DGSL~~tGGl---------------D~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~  369 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGL---------------DSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTC  369 (459)
T ss_pred             eeEecCCCceeeccCc---------------cchhheeec--ccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcE
Confidence            5778888888877443               235677644  4565544443 45667899999998 477788888877


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIK  123 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~  123 (225)
                      ..+++..-  ....+.. .-...-....+.+ .|.+.++..-
T Consensus       370 kVWDLR~r--~~ly~ip-AH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  370 KVWDLRMR--SELYTIP-AHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             EEeeeccc--ccceecc-cccchhhheEecccCCeEEEEccc
Confidence            77776531  1111111 0112456788887 4566665543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.21  E-value=0.87  Score=39.82  Aligned_cols=95  Identities=20%  Similarity=0.205  Sum_probs=62.0

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      |.+.+.|||+...+-+.                 ...|-.++.++|+.-.... ...--+-++|+.|.+ |.|+-+....
T Consensus       371 n~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsT  432 (480)
T KOG0271|consen  371 NHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDST  432 (480)
T ss_pred             eeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCce
Confidence            77888888876666554                 3456666777776554444 345568899999976 9999999888


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCC---ceEECCCCCEEEEe
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPD---NINLAPDGSFWVAL  121 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd---~i~~d~~G~l~v~~  121 (225)
                      |-.+++.++      .+..++||--|   ...+.+||...++.
T Consensus       433 LKvw~V~tk------Kl~~DLpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  433 LKVWDVRTK------KLKQDLPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             EEEEEeeee------eecccCCCCCceEEEEEecCCCceeecC
Confidence            888887642      23334666433   23334566554433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.17  E-value=1.8  Score=39.10  Aligned_cols=82  Identities=15%  Similarity=0.085  Sum_probs=51.5

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC------CCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES------WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      .+|.++..+|+...+.+++.-.|-..++|||+.+-++-.      ...-|+.++.+++.+... ++..  .-+.+=.-++
T Consensus        60 dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-TyfG--r~fT~VaG~~  136 (668)
T COG4946          60 DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TYFG--RRFTRVAGWI  136 (668)
T ss_pred             HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EEec--cccceeeccC
Confidence            567788778888888899998899999999987655321      233566666554312211 1221  1123445577


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      +||++.|..-.
T Consensus       137 ~dg~iiV~TD~  147 (668)
T COG4946         137 PDGEIIVSTDF  147 (668)
T ss_pred             CCCCEEEEecc
Confidence            88998876533

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=92.95  E-value=5.1  Score=35.22  Aligned_cols=34  Identities=21%  Similarity=-0.018  Sum_probs=28.5

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           55 EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ..-.+--.++|+|||+ ...+-+.++.|..+++..
T Consensus       155 gH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             CCccEEEEEEECCCcc-hhhccccCCeEEEecCCC
Confidence            4456778999999998 668888999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=92.87  E-value=6.6  Score=35.02  Aligned_cols=60  Identities=13%  Similarity=0.119  Sum_probs=40.0

Q ss_pred             cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      -..++|.|||- ||.+-+.++.|..|++...  .....|-. ..+--..|.|..+|.+.++...
T Consensus       350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~--~~~a~Fpg-ht~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ--TNVAKFPG-HTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             eEEeeEcCCce-EEeccCCCceEEEEEcCCc--cccccCCC-CCCceeEEEeccCceEEEEEec
Confidence            45788999984 8888888888888887632  12323332 2233468999988876666655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=92.77  E-value=10  Score=36.80  Aligned_cols=100  Identities=9%  Similarity=0.026  Sum_probs=54.2

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC----e----EEEEecCccccceeEEecCCCEEEEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE----E----TTVLHEGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~----~----~~~~~~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      .++++++|++++|-..                 .+.|..|+..+.    .    .............++|++..+...++
T Consensus       488 ~i~fs~dg~~latgg~-----------------D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las  550 (793)
T PLN00181        488 AIGFDRDGEFFATAGV-----------------NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS  550 (793)
T ss_pred             EEEECCCCCEEEEEeC-----------------CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEE
Confidence            4677777776666443                 556666664311    0    00111222345688998753335566


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIK  123 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~  123 (225)
                      ...++.|..+++.+.  .....+. ...+.-..+++.+ +|.++++...
T Consensus       551 ~~~Dg~v~lWd~~~~--~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        551 SNFEGVVQVWDVARS--QLVTEMK-EHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             EeCCCeEEEEECCCC--eEEEEec-CCCCCEEEEEEcCCCCCEEEEEcC
Confidence            666788888887642  1112221 1222345778875 6777666654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=92.65  E-value=4.7  Score=33.69  Aligned_cols=81  Identities=11%  Similarity=-0.027  Sum_probs=50.8

Q ss_pred             cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE
Q 047259           38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF  117 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l  117 (225)
                      -.|-.+|..+++.......-..-.-|.|+|+|++..+.+ ..+.|.-++.........    ...+-.-+.+++.-++++
T Consensus        87 k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNE----EQFKFEVNEISWNNSNDL  161 (313)
T ss_pred             ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeeh----hcccceeeeeeecCCCCE
Confidence            356667766666655555555667899999999666555 456888887653211111    112234567777777788


Q ss_pred             EEEeec
Q 047259          118 WVALIK  123 (225)
Q Consensus       118 ~v~~~~  123 (225)
                      ++...+
T Consensus       162 Fflt~G  167 (313)
T KOG1407|consen  162 FFLTNG  167 (313)
T ss_pred             EEEecC
Confidence            777766

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=92.58  E-value=1.8  Score=35.93  Aligned_cols=61  Identities=13%  Similarity=0.257  Sum_probs=38.5

Q ss_pred             cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      -+.-.++|+.. .|||--...++++||.+++  .....+..+.+|----+.+.|+|.+|.....
T Consensus       227 V~SASL~P~k~-~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  227 VESASLHPKKE-FFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             cccccccCCCc-eEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeeccCC
Confidence            35567889874 9999999999999999753  1122222222231234567777777776554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.56  E-value=3.5  Score=36.56  Aligned_cols=80  Identities=18%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             EEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           39 QLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      .+..+|.++|....+....  -.+...+|-|||.. +|+-+..+.|...+.+|+..+.++-..  .| .--.+++.+||.
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~-~v~dlait~Dgk  367 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR--DP-KVHDLAITYDGK  367 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc--cc-eeEEEEEcCCCc
Confidence            4667777666655544322  34566899999974 678888889999999886444443211  11 235789999997


Q ss_pred             EEEEee
Q 047259          117 FWVALI  122 (225)
Q Consensus       117 l~v~~~  122 (225)
                      ..++..
T Consensus       368 ~vl~v~  373 (519)
T KOG0293|consen  368 YVLLVT  373 (519)
T ss_pred             EEEEEe
Confidence            444433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=92.40  E-value=2.1  Score=38.35  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=46.5

Q ss_pred             eeEEecCCCEEEEEeCCCCEEEEEEecCC-CCCceeEEecc-CCCCCCceEECCCCCEEEEeec
Q 047259           62 GVALSKDENFVVVCESWKFRCRRYWLKGP-RQGRLESFIEH-LPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        62 Gi~~~~dg~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .|.+.|+++ .+++++..++|+.|..... .....+.|-.+ .+|++-.+.+.+||+..++..+
T Consensus       390 ~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  390 CLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS  452 (503)
T ss_pred             ceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence            588899998 8899999999999986532 23334455443 6788999999999998777655

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=92.25  E-value=2.8  Score=38.09  Aligned_cols=60  Identities=18%  Similarity=0.325  Sum_probs=42.4

Q ss_pred             ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc---eEECCCC-CEEEEeecCC
Q 047259           59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN---INLAPDG-SFWVALIKMN  125 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~---i~~d~~G-~l~v~~~~~~  125 (225)
                      -...++++||.+ |-++....+-|..+|+..     . +.+..+.|.+||   |.+..|| +||.......
T Consensus       511 aCyALa~spDak-vcFsccsdGnI~vwDLhn-----q-~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  511 ACYALAISPDAK-VCFSCCSDGNIAVWDLHN-----Q-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             hhhhhhcCCccc-eeeeeccCCcEEEEEccc-----c-eeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            456799999998 666666778899999863     1 233346677776   6677888 5998776643

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=92.25  E-value=0.1  Score=30.05  Aligned_cols=18  Identities=28%  Similarity=0.517  Sum_probs=15.6

Q ss_pred             CCCcEEEcCCCcEEEEcC
Q 047259            1 FTNDVIEASDGSLYFTVS   18 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~   18 (225)
                      ++++|++|++|+||++=.
T Consensus        14 ~~~~IavD~~GNiYv~G~   31 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGY   31 (38)
T ss_pred             eEEEEEECCCCCEEEEEe
Confidence            478999999999999944

SBBP stands for Seven Bladed Beta Propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.11  E-value=0.84  Score=38.60  Aligned_cols=124  Identities=15%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             ccceeEEecCCCEEEEEeC----CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhc
Q 047259           59 FANGVALSKDENFVVVCES----WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQS  134 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~  134 (225)
                      +-.| ++|+||++||-++.    +.+-|-.|+.+.+ ....-.|. ...-.|-.+.+-+||++.|...+.-       ..
T Consensus       116 yGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~-t~GiGpHev~lm~DGrtlvvanGGI-------et  185 (366)
T COG3490         116 YGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFS-THGIGPHEVTLMADGRTLVVANGGI-------ET  185 (366)
T ss_pred             eccc-ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccc-cCCcCcceeEEecCCcEEEEeCCce-------ec
Confidence            3344 58999999999985    3566777876521 11111121 1122588999999999777666521       12


Q ss_pred             ChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEE-EEeCCEEEEeeC
Q 047259          135 CPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSA-VEFEDNLYMASI  202 (225)
Q Consensus       135 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~-~~~~~~Lyv~~~  202 (225)
                      +|..-+.-..+ +.|      .   ++.|+.-..+|++++....|.....-.+--+ ...+|++|++..
T Consensus       186 hpdfgR~~lNl-dsM------e---PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         186 HPDFGRTELNL-DSM------E---PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ccccCccccch-hhc------C---ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            22111100000 011      1   2344433378999888877632111111112 234789998853

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=92.09  E-value=0.34  Score=27.73  Aligned_cols=29  Identities=14%  Similarity=0.027  Sum_probs=23.0

Q ss_pred             CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC
Q 047259            1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE   46 (225)
Q Consensus         1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~   46 (225)
                      .||++++++.+ +||++|..                 ...|++.+.+
T Consensus        10 ~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~   39 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLD   39 (43)
T ss_pred             CcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCC
Confidence            38999999975 69999997                 3577777764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.04  E-value=1.7  Score=38.04  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=58.0

Q ss_pred             ccCCCCcEEEEEeCCCCeEEEEe--cCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259           32 VEGKPHGQLLKYDPELEETTVLH--EGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN  108 (225)
Q Consensus        32 ~~~~~~g~v~~~d~~~~~~~~~~--~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~  108 (225)
                      +.....+.|=.||+..++ +.+.  +-...| ..+.+.|+|+++|++++. +.+..||..+..+..  .+..+..|.+..
T Consensus       220 at~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g--~~~kg~tGsirs  295 (412)
T KOG3881|consen  220 ATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG--CGLKGITGSIRS  295 (412)
T ss_pred             EEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec--cccCCccCCcce
Confidence            334567888888986332 3322  222233 568899999999999976 689999987532221  122345678999


Q ss_pred             eEECCCCCEEEEeec
Q 047259          109 INLAPDGSFWVALIK  123 (225)
Q Consensus       109 i~~d~~G~l~v~~~~  123 (225)
                      |.+.+.+.+.....-
T Consensus       296 ih~hp~~~~las~GL  310 (412)
T KOG3881|consen  296 IHCHPTHPVLASCGL  310 (412)
T ss_pred             EEEcCCCceEEeecc
Confidence            999998776665544

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.85  E-value=4.5  Score=35.73  Aligned_cols=67  Identities=13%  Similarity=0.045  Sum_probs=39.5

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc----CCCCCCceEE--CC--CCCEEEEeec
Q 047259           56 GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH----LPGGPDNINL--AP--DGSFWVALIK  123 (225)
Q Consensus        56 ~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~----~~g~Pd~i~~--d~--~G~l~v~~~~  123 (225)
                      ....+.|++.+....+||+++.. ..||+|+.+.......+.+...    +..-..||++  ..  +|.|.+++.+
T Consensus       206 ~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG  280 (381)
T PF02333_consen  206 VGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG  280 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred             CCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence            34579999999999999999987 5899999873211122222211    1122457776  33  3456666665

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.84  E-value=3.3  Score=36.13  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=64.4

Q ss_pred             EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC---CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHH
Q 047259           65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP---GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKL  141 (225)
Q Consensus        65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~---g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~  141 (225)
                      ...||+ +|+. ...+.|+.+++++..    .++.....   ....+-.+..+|+||++...                  
T Consensus        65 ~~~dg~-v~~~-~~~G~i~A~d~~~g~----~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------------------  120 (370)
T COG1520          65 ADGDGT-VYVG-TRDGNIFALNPDTGL----VKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------------------  120 (370)
T ss_pred             EeeCCe-EEEe-cCCCcEEEEeCCCCc----EEecccCcCcceeccCceEEeCCeEEEeccc------------------
Confidence            555665 8887 455689999987531    11221111   12333333348999998866                  


Q ss_pred             HHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          142 LQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       142 ~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                                         +.+..+|+ +|+.+-....+. . +......+..++.+|+.+ ..+++..++..
T Consensus       121 -------------------g~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~  171 (370)
T COG1520         121 -------------------GKLYALDASTGTLVWSRNVGG-S-PYYASPPVVGDGTVYVGT-DDGHLYALNAD  171 (370)
T ss_pred             -------------------ceEEEEECCCCcEEEEEecCC-C-eEEecCcEEcCcEEEEec-CCCeEEEEEcc
Confidence                               36888998 799888877654 1 112233455678888887 55777777766

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.26  E-value=9.9  Score=33.51  Aligned_cols=140  Identities=13%  Similarity=0.081  Sum_probs=69.7

Q ss_pred             CcEEEEEeCCCCeE--EEEecCccc---cceeEEecCCCEEEEEeCC--C-CEEEEEEecCC--CCCceeEEeccCCCCC
Q 047259           37 HGQLLKYDPELEET--TVLHEGFYF---ANGVALSKDENFVVVCESW--K-FRCRRYWLKGP--RQGRLESFIEHLPGGP  106 (225)
Q Consensus        37 ~g~v~~~d~~~~~~--~~~~~~~~~---pnGi~~~~dg~~Lyv~~~~--~-~~I~~~~~~~~--~~~~~~~~~~~~~g~P  106 (225)
                      .-.|++....+..-  .++.+....   --++..++|+++|++....  . ..|+.++.+..  .......+.....+.-
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            34688888654432  355544333   3489999999998876543  3 56888887642  1233444432222211


Q ss_pred             CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC----cEE-EEEECCCC
Q 047259          107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG----KII-MDFNDPNA  181 (225)
Q Consensus       107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G----~~~-~~~~~p~g  181 (225)
                      ..+. ...+.+|+.....                               .+  .++|++++.+.    ... ..++...+
T Consensus       281 ~~v~-~~~~~~yi~Tn~~-------------------------------a~--~~~l~~~~l~~~~~~~~~~~l~~~~~~  326 (414)
T PF02897_consen  281 YYVD-HHGDRLYILTNDD-------------------------------AP--NGRLVAVDLADPSPAEWWTVLIPEDED  326 (414)
T ss_dssp             EEEE-EETTEEEEEE-TT--------------------------------T--T-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred             EEEE-ccCCEEEEeeCCC-------------------------------CC--CcEEEEecccccccccceeEEcCCCCc
Confidence            1111 1244576655431                               22  67888887642    233 23332222


Q ss_pred             CcccceeEEEEeCCEEEEee--CCCCeEEEEeCC
Q 047259          182 TYISFVTSAVEFEDNLYMAS--IQSKFVGKLPLN  213 (225)
Q Consensus       182 ~~~~~~t~~~~~~~~Lyv~~--~~~~~i~~~~~~  213 (225)
                      .   .+..+...+++|++..  -...+|.++++.
T Consensus       327 ~---~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  327 V---SLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             E---EEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             e---eEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            1   2444455677777664  344566677776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.99  E-value=6.9  Score=34.76  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccc-cceeEEecCCCEEEEEeCCCCEEEEEE
Q 047259           10 DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYF-ANGVALSKDENFVVVCESWKFRCRRYW   86 (225)
Q Consensus        10 dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~-pnGi~~~~dg~~Lyv~~~~~~~I~~~~   86 (225)
                      .+.+||..-+. .|   -.........+.-+|.+..+ +++++.-  .+... -.-|.||||.++|.-|- ....+...+
T Consensus       224 tdEVWfl~FS~-nG---kyLAsaSkD~Taiiw~v~~d-~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg-~~e~~~lwD  297 (519)
T KOG0293|consen  224 TDEVWFLQFSH-NG---KYLASASKDSTAIIWIVVYD-VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG-FDEVLSLWD  297 (519)
T ss_pred             CCcEEEEEEcC-CC---eeEeeccCCceEEEEEEecC-cceeeeeeeecccCceEEEEECCCCCeEEecC-chHheeecc
Confidence            45677764431 11   11122234556677888876 4554432  23333 35699999998775554 344577777


Q ss_pred             ecCCCCCcee-EEeccCCCCCCceEECCCCCEEEEeec
Q 047259           87 LKGPRQGRLE-SFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        87 ~~~~~~~~~~-~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .+++   ... .+-......+..++.-+||.=+|+...
T Consensus       298 v~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~  332 (519)
T KOG0293|consen  298 VDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP  332 (519)
T ss_pred             CCcc---hhhhhcccCcCCCcceeEEccCCceeEecCC
Confidence            7642   221 121111223455666666665665544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=90.90  E-value=4.6  Score=38.73  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=54.3

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      ..|-+..||.+.+....-..-...+.+|....... +++.....-.|..||..+.  .-.+.|. +....-..+++.+||
T Consensus       513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~--kvvR~f~-gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR--KVVREFW-GHGNRITDMTFSPDG  588 (910)
T ss_pred             CcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh--hhhHHhh-ccccceeeeEeCCCC
Confidence            36778888876443222234445677888877655 6677777789999987541  1123333 233457899999999


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      ++.++..-
T Consensus       589 rWlisasm  596 (910)
T KOG1539|consen  589 RWLISASM  596 (910)
T ss_pred             cEEEEeec
Confidence            98776654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=90.49  E-value=12  Score=33.47  Aligned_cols=136  Identities=11%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             CCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecC-------CCCCceeEEeccCCCCC-
Q 047259           36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKG-------PRQGRLESFIEHLPGGP-  106 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~-------~~~~~~~~~~~~~~g~P-  106 (225)
                      -.|+||.|...+|++-.+... ...-.-|.++.||. ++++.+.+++|..+.+..       ........|.++  .+| 
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H--tlsI  177 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH--TLSI  177 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccC--ccee
Confidence            378899999888875544433 34456799999987 889999999999887632       122233344332  111 


Q ss_pred             CceEECC---CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCc
Q 047259          107 DNINLAP---DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATY  183 (225)
Q Consensus       107 d~i~~d~---~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~  183 (225)
                      ..+.++.   ++++|.+.-.                                   .-.+++.+. .|.++..+..|..  
T Consensus       178 TDl~ig~Gg~~~rl~TaS~D-----------------------------------~t~k~wdlS-~g~LLlti~fp~s--  219 (476)
T KOG0646|consen  178 TDLQIGSGGTNARLYTASED-----------------------------------RTIKLWDLS-LGVLLLTITFPSS--  219 (476)
T ss_pred             EEEEecCCCccceEEEecCC-----------------------------------ceEEEEEec-cceeeEEEecCCc--
Confidence            2444443   2345554433                                   133455553 4677777777642  


Q ss_pred             ccceeEEE--EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          184 ISFVTSAV--EFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       184 ~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                         ++.++  +.+..+|+++ ..+.|....+-+..
T Consensus       220 ---i~av~lDpae~~~yiGt-~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  220 ---IKAVALDPAERVVYIGT-EEGKIFQNLLFKLS  250 (476)
T ss_pred             ---ceeEEEcccccEEEecC-CcceEEeeehhcCC
Confidence               33333  2466777776 44677777665544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.44  E-value=4.4  Score=35.12  Aligned_cols=84  Identities=19%  Similarity=0.273  Sum_probs=56.8

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCC----CCEEEEEEec-CCCCCceeEEeccCCCCCC-
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFAN-GVALSKDENFVVVCESW----KFRCRRYWLK-GPRQGRLESFIEHLPGGPD-  107 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pn-Gi~~~~dg~~Lyv~~~~----~~~I~~~~~~-~~~~~~~~~~~~~~~g~Pd-  107 (225)
                      .+..+|+.++.+++..+.+..+-..-+ =+.++++++.||+....    ...|++++++ +   +..+.+.  ...... 
T Consensus       257 ~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT--~~~~~~~  331 (353)
T PF00930_consen  257 DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLT--CEDGDHY  331 (353)
T ss_dssp             TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESS--TTSSTTE
T ss_pred             CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEecc--CCCCCce
Confidence            446789999998777666655543343 47889999999988875    4589999987 4   2333332  122234 


Q ss_pred             ceEECCCCCEEEEeec
Q 047259          108 NINLAPDGSFWVALIK  123 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~  123 (225)
                      ...+.++|+.++-...
T Consensus       332 ~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  332 SASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEE-TTSSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEc
Confidence            7999999998887665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PLN00181 protein SPA1-RELATED; Provisional

Probab=90.36  E-value=18  Score=35.02  Aligned_cols=54  Identities=9%  Similarity=-0.012  Sum_probs=34.0

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEe-cCCCEEEEEeCCCCEEEEEEecC
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALS-KDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~-~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ...|.|..||..++..............+.+. +++. ++++-+.++.|..|++..
T Consensus       595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            34677777887655443333333345567775 4566 566667788999999864

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=90.29  E-value=1.4  Score=38.91  Aligned_cols=20  Identities=25%  Similarity=0.039  Sum_probs=18.2

Q ss_pred             cccceeEEecCCCEEEEEeC
Q 047259           58 YFANGVALSKDENFVVVCES   77 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      ..|.-|.+|-||++|||+.+
T Consensus       389 GGPQMlQLSLDGKRLYVt~S  408 (476)
T KOG0918|consen  389 GGPQMLQLSLDGKRLYVTNS  408 (476)
T ss_pred             CCceeEEeccCCcEEEEEch
Confidence            46899999999999999986

>PHA02713 hypothetical protein; Provisional

Probab=90.26  E-value=15  Score=34.08  Aligned_cols=155  Identities=12%  Similarity=0.066  Sum_probs=75.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC-----CCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESW-----KFRCRRYWLKGPRQGRLESFIEHLPGGPDN  108 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~-----~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~  108 (225)
                      ...+++||+.++++..+.+ +..|   .+++.- +| .||+.--.     ...+.+|++..+   .+..... .+..-.+
T Consensus       319 ~~~v~~Yd~~~n~W~~~~~-m~~~R~~~~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~-mp~~r~~  391 (557)
T PHA02713        319 LNKVYKINIENKIHVELPP-MIKNRCRFSLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDD---KWKMLPD-MPIALSS  391 (557)
T ss_pred             cceEEEEECCCCeEeeCCC-CcchhhceeEEEE-CC-EEEEECCcCCCCCCceEEEEECCCC---eEEECCC-CCccccc
Confidence            4579999998888876542 2211   233332 34 49887543     246888998643   3333221 2210011


Q ss_pred             -eEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccc
Q 047259          109 -INLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISF  186 (225)
Q Consensus       109 -i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~  186 (225)
                       -+..-+|.||+..+........   ....+..+    .  ..    ........|.++||. .++...-+.+.++   .
T Consensus       392 ~~~~~~~g~IYviGG~~~~~~~~---~~~~~~~~----~--~~----~~~~~~~~ve~YDP~td~W~~v~~m~~~r---~  455 (557)
T PHA02713        392 YGMCVLDQYIYIIGGRTEHIDYT---SVHHMNSI----D--ME----EDTHSSNKVIRYDTVNNIWETLPNFWTGT---I  455 (557)
T ss_pred             ccEEEECCEEEEEeCCCcccccc---cccccccc----c--cc----ccccccceEEEECCCCCeEeecCCCCccc---c
Confidence             1222368999986542100000   00000000    0  00    000003468999997 5665443333332   1


Q ss_pred             eeEEEEeCCEEEEeeCCC------CeEEEEeCCC
Q 047259          187 VTSAVEFEDNLYMASIQS------KFVGKLPLNT  214 (225)
Q Consensus       187 ~t~~~~~~~~Lyv~~~~~------~~i~~~~~~~  214 (225)
                      ...++..+++||+..-.+      ..+.+|+..+
T Consensus       456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence            223456789999974321      3467787776

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=90.16  E-value=0.28  Score=28.24  Aligned_cols=19  Identities=16%  Similarity=0.289  Sum_probs=17.1

Q ss_pred             CCCceEECCCCCEEEEeec
Q 047259          105 GPDNINLAPDGSFWVALIK  123 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .+.+|++|++|++||+...
T Consensus        14 ~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eEEEEEECCCCCEEEEEee
Confidence            4789999999999999875

SBBP stands for Seven Bladed Beta Propeller.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=90.16  E-value=7.6  Score=33.47  Aligned_cols=136  Identities=11%  Similarity=0.013  Sum_probs=75.4

Q ss_pred             CcEEEEEeCCCCeEEEEe------cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC-C-CCCceeEEecc---CCCC
Q 047259           37 HGQLLKYDPELEETTVLH------EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG-P-RQGRLESFIEH---LPGG  105 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~------~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~-~-~~~~~~~~~~~---~~g~  105 (225)
                      .--|..+|.-+|+++.-.      +.+..+..++|+|||..||...  +++|..|+... + .-....++...   ..|.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            334566776667766542      2345678999999999888665  46899998842 1 11111111111   1122


Q ss_pred             CCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCc
Q 047259          106 PDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATY  183 (225)
Q Consensus       106 Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~  183 (225)
                      -.-+++.|... .+....-                                    ...+-.+..+ +.++..+....|  
T Consensus       210 isc~a~sP~~~~~~a~gsY------------------------------------~q~~giy~~~~~~pl~llggh~g--  251 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSY------------------------------------GQRVGIYNDDGRRPLQLLGGHGG--  251 (406)
T ss_pred             eeeeeccCCCCcceeeecc------------------------------------cceeeeEecCCCCceeeecccCC--
Confidence            22334444221 1111111                                    1233344444 455666654333  


Q ss_pred             ccceeEEE--EeCCEEEEeeCCCCeEEEEeCCC
Q 047259          184 ISFVTSAV--EFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       184 ~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                        ++|-+.  +++++||.+.-..++|..-++..
T Consensus       252 --GvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  252 --GVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             --CeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence              567665  46789999999999998877653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=89.79  E-value=19  Score=34.99  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=53.0

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--eEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--ETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      .|.++++|++..|...                 .|.|-+++..+.  +.+.+-.......+|+..  +. .+++.+.++.
T Consensus        18 ~i~~d~~gefi~tcgs-----------------dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~-~f~~~s~~~t   77 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGS-----------------DGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN-HFLTGSEQNT   77 (933)
T ss_pred             EEEEcCCCCEEEEecC-----------------CCceEEeecCCcccCCchhhccCceeEEEeec--cc-ceEEeeccce
Confidence            4778899985555554                 445555543211  111111022233455544  33 6677788899


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      |.+|.....   ..+..+....---+.++++.+|.+.++...
T Consensus        78 v~~y~fps~---~~~~iL~Rftlp~r~~~v~g~g~~iaagsd  116 (933)
T KOG1274|consen   78 VLRYKFPSG---EEDTILARFTLPIRDLAVSGSGKMIAAGSD  116 (933)
T ss_pred             EEEeeCCCC---CccceeeeeeccceEEEEecCCcEEEeecC
Confidence            999987532   222111111112378999999988777665

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=89.76  E-value=12  Score=36.83  Aligned_cols=124  Identities=15%  Similarity=0.155  Sum_probs=83.8

Q ss_pred             EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECC-CCCEEEEeecCCchhhh
Q 047259           53 LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAP-DGSFWVALIKMNQTGVR  130 (225)
Q Consensus        53 ~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~  130 (225)
                      ...+...+.|++.+--++-+|.++.....|..-++++.   ...+++. .+ ..|..+++++ .|.+|.++++.-     
T Consensus       475 ~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~---~~~vl~~~~l-~~~r~~~v~p~~g~~~wtd~~~~-----  545 (877)
T KOG1215|consen  475 CGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGS---SRKVLVSKDL-DLPRSIAVDPEKGLMFWTDWGQP-----  545 (877)
T ss_pred             eccCccccCcEEEEeccCCceecccCCceeEEEEccCC---ceeEEEecCC-CCccceeeccccCeeEEecCCCC-----
Confidence            45678899999999888889999999999988887653   1223332 33 6799999998 578899998831     


Q ss_pred             hhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCC-eE
Q 047259          131 AIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSK-FV  207 (225)
Q Consensus       131 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~-~i  207 (225)
                                                   . ++.|-..+|.....+..- +  +..+++++.  ..+++|-.+...+ .|
T Consensus       546 -----------------------------~-~i~ra~~dg~~~~~l~~~-~--~~~p~glt~d~~~~~~yw~d~~~~~~i  592 (877)
T KOG1215|consen  546 -----------------------------P-RIERASLDGSERAVLVTN-G--ILWPNGLTIDYETDRLYWADAKLDYTI  592 (877)
T ss_pred             -----------------------------c-hhhhhcCCCCCceEEEeC-C--ccCCCcceEEeecceeEEEcccCCcce
Confidence                                         2 455556666554444321 1  112222332  3678888888877 67


Q ss_pred             EEEeCCCcccc
Q 047259          208 GKLPLNTPEAE  218 (225)
Q Consensus       208 ~~~~~~~~~~~  218 (225)
                      .....++..-+
T Consensus       593 ~~~~~~g~~r~  603 (877)
T KOG1215|consen  593 ESANMDGQNRR  603 (877)
T ss_pred             eeeecCCCceE
Confidence            77777776553

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.74  E-value=16  Score=33.35  Aligned_cols=147  Identities=16%  Similarity=0.134  Sum_probs=72.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccce-eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCC----CCceEE
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANG-VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGG----PDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnG-i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~----Pd~i~~  111 (225)
                      ....+.+|.. |.++-.......... +..-++|.+++...   +++..+++.|.    ..... .+++.    ==.+..
T Consensus       127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~----v~~~~-~l~~~~~~~HHD~~~  197 (477)
T PF05935_consen  127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGK----VIWEY-DLPGGYYDFHHDIDE  197 (477)
T ss_dssp             EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT------EEEEE-E--TTEE-B-S-EEE
T ss_pred             CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCC----EEEee-ecCCcccccccccEE
Confidence            5678889986 776654433322222 67778888554444   78889988653    21111 23321    135778


Q ss_pred             CCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEEC-----CCCC----
Q 047259          112 APDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFND-----PNAT----  182 (225)
Q Consensus       112 d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~-----p~g~----  182 (225)
                      .++|++++..........      +.-.+              ..   .-.|+++|++|+++..+..     |...    
T Consensus       198 l~nGn~L~l~~~~~~~~~------~~~~~--------------~~---~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~  254 (477)
T PF05935_consen  198 LPNGNLLILASETKYVDE------DKDVD--------------TV---EDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLK  254 (477)
T ss_dssp             -TTS-EEEEEEETTEE-T------S-EE--------------------S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGG
T ss_pred             CCCCCEEEEEeecccccC------CCCcc--------------Ee---cCEEEEECCCCCEEEEEehHHhCCcccccccc
Confidence            889998777664211000      00000              00   4579999999999988742     1111    


Q ss_pred             ------------cc--cceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          183 ------------YI--SFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       183 ------------~~--~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                                  ..  -...++..  .++.|+|++-..+.|.+++..+.
T Consensus       255 ~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  255 PYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             T--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             cccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence                        00  01233433  36999999999999999995443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=89.49  E-value=19  Score=33.90  Aligned_cols=134  Identities=16%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             CcEEEEEeCCCCeEEE-EecC----ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCCCCCceE
Q 047259           37 HGQLLKYDPELEETTV-LHEG----FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPGGPDNIN  110 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~-~~~~----~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~  110 (225)
                      .-.||++.++. .+++ ..+.    .....-|.++-|++.++++.-....+..+..++........+... .-..-.-|+
T Consensus       404 ~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~  482 (691)
T KOG2048|consen  404 RTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLV  482 (691)
T ss_pred             ceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence            34678888753 3322 2222    234567899999988887776667777887765322222222211 111236789


Q ss_pred             ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEE-CCCCCcccceeE
Q 047259          111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFN-DPNATYISFVTS  189 (225)
Q Consensus       111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~-~p~g~~~~~~t~  189 (225)
                      +.++|+...+...                                    .+.|..++..++...-+. ..+-    ..|.
T Consensus       483 ~SsdG~yiaa~~t------------------------------------~g~I~v~nl~~~~~~~l~~rln~----~vTa  522 (691)
T KOG2048|consen  483 VSSDGNYIAAIST------------------------------------RGQIFVYNLETLESHLLKVRLNI----DVTA  522 (691)
T ss_pred             EcCCCCEEEEEec------------------------------------cceEEEEEcccceeecchhccCc----ceee
Confidence            9999998887765                                    567888888765544443 2221    2333


Q ss_pred             EEE---eCCEEEEeeCCCCeEEEEeC
Q 047259          190 AVE---FEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       190 ~~~---~~~~Lyv~~~~~~~i~~~~~  212 (225)
                      +..   ..++|-++ ..++.+..|++
T Consensus       523 ~~~~~~~~~~lvva-ts~nQv~efdi  547 (691)
T KOG2048|consen  523 AAFSPFVRNRLVVA-TSNNQVFEFDI  547 (691)
T ss_pred             eeccccccCcEEEE-ecCCeEEEEec
Confidence            332   24666554 45688888887

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=88.94  E-value=11  Score=32.54  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC---ccccceeEEecCCC-EEEEEe
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG---FYFANGVALSKDEN-FVVVCE   76 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~-~Lyv~~   76 (225)
                      |-|+..+++||.-.++.++                 .|.|-.|+.++.++......   ..--|.+.+-|..- .+.||+
T Consensus       350 yvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             cccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence            5678888888877777666                 67777777665543322211   12235666666543 345555


Q ss_pred             CCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEECCCCCEEEEeec
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                       ..+.|+.+++.|.   -++.|..+  ..|-=-+.++.++|.+.-+...
T Consensus       413 -rsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigE  457 (508)
T KOG0275|consen  413 -RSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGE  457 (508)
T ss_pred             -CCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence             4579999998763   23334332  1222246677888875555444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=88.77  E-value=3.1  Score=34.95  Aligned_cols=69  Identities=20%  Similarity=0.285  Sum_probs=49.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      -|-+++.|||.+-.+  +               ...|.++.+|.++++.-.-.+....-+.++|+|+.  .+++......
T Consensus       195 v~t~~vSpDGslcas--G---------------gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr--ywL~~at~~s  255 (315)
T KOG0279|consen  195 VNTVTVSPDGSLCAS--G---------------GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR--YWLCAATATS  255 (315)
T ss_pred             EEEEEECCCCCEEec--C---------------CCCceEEEEEccCCceeEeccCCCeEeeEEecCCc--eeEeeccCCc
Confidence            466788888877665  2               23788888887766654445667778999999973  6666666667


Q ss_pred             EEEEEecC
Q 047259           82 CRRYWLKG   89 (225)
Q Consensus        82 I~~~~~~~   89 (225)
                      |..++++.
T Consensus       256 IkIwdl~~  263 (315)
T KOG0279|consen  256 IKIWDLES  263 (315)
T ss_pred             eEEEeccc
Confidence            88888764

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=88.71  E-value=2.3  Score=29.28  Aligned_cols=49  Identities=16%  Similarity=0.116  Sum_probs=34.0

Q ss_pred             ceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+.|+-+|+.  ....+..  |  +..++++..  .++.|||++.....|.++++++
T Consensus        35 ~~~Vvyyd~~--~~~~va~--g--~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   35 WGNVVYYDGK--EVKVVAS--G--FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CceEEEEeCC--EeEEeec--c--CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            5788888764  2333332  2  344555554  5789999999999999999865

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=88.60  E-value=20  Score=33.12  Aligned_cols=106  Identities=17%  Similarity=0.209  Sum_probs=67.6

Q ss_pred             EEEEEEecCCCCCceeEEec-cCCC-CCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           81 RCRRYWLKGPRQGRLESFIE-HLPG-GPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~-~~~g-~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .|++|++++.   ..+-... ..+| .-+..++|. +|.|=|+......+.                         ....
T Consensus       249 ~I~kf~~~~~---~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~-------------------------~~~~  300 (521)
T PF09826_consen  249 TIYKFALDGG---KIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWW-------------------------DSED  300 (521)
T ss_pred             EEEEEEccCC---cEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccc-------------------------cCCC
Confidence            5778887652   2322222 2455 467899997 577777766521100                         0111


Q ss_pred             CcceEEEEECCCCcEEEEEEC-CCCCcccceeEEEEeCCEEEEeeCCC-CeEEEEeCCCccc
Q 047259          158 DAGARIVKVDTHGKIIMDFND-PNATYISFVTSAVEFEDNLYMASIQS-KFVGKLPLNTPEA  217 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~-p~g~~~~~~t~~~~~~~~Lyv~~~~~-~~i~~~~~~~~~~  217 (225)
                      .+...|..+|.+-+.+..+.. ..|+   .+-++-+.+++.||.++.. +-+.+++|..+.+
T Consensus       301 ~s~N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~  359 (521)
T PF09826_consen  301 TSSNNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPAN  359 (521)
T ss_pred             CceEEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEeecCceEEEECCCCCC
Confidence            237889999988888777764 2233   3555667799999998877 8899998877543

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=88.58  E-value=2.1  Score=37.78  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           61 NGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ..|.+|=|.|+|||+.+-.+-|++|++++
T Consensus       315 TDilISmDDRFLYvs~WLHGDirQYdIsD  343 (476)
T KOG0918|consen  315 TDILISLDDRFLYVSNWLHGDIRQYDISD  343 (476)
T ss_pred             heeEEeecCcEEEEEeeeecceeeeccCC
Confidence            57889999999999999999999999975

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=88.49  E-value=4.8  Score=34.78  Aligned_cols=81  Identities=14%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             CCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+.|..++..+.++...++ +-..-..+.|||||+.+..+....-||....+.+.    .-.++......-.|+++.+|
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----~~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----KGYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----eeEEecccccCceeEEECCC
Confidence            35566666666666666553 44455779999999988888888888888887642    22333333334589999999


Q ss_pred             CCEEEE
Q 047259          115 GSFWVA  120 (225)
Q Consensus       115 G~l~v~  120 (225)
                      |++-.-
T Consensus       145 g~f~ai  150 (447)
T KOG4497|consen  145 GQFCAI  150 (447)
T ss_pred             Cceeee
Confidence            986443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=88.33  E-value=12  Score=34.30  Aligned_cols=64  Identities=11%  Similarity=-0.034  Sum_probs=44.3

Q ss_pred             ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC-C---CCCCceEECCCCCEEEEeec
Q 047259           59 FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL-P---GGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~-~---g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .-+.-+|.|+.+.-|++.+..+.+..++.+. ...+.++|-.-. .   -.|.-+++++||.+..+...
T Consensus       270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~  337 (641)
T KOG0772|consen  270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL  337 (641)
T ss_pred             eeeccccccCcccceEEecCCCcEEEEecCC-chhheeEEeeccCCCcccCceeeecCCCcchhhhccc
Confidence            3456688999888899998888777777654 245666665321 1   14778999999988554433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.17  E-value=18  Score=32.10  Aligned_cols=84  Identities=15%  Similarity=0.022  Sum_probs=53.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-c--CCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-H--LPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~--~~g~Pd~i~~d~  113 (225)
                      ...|=.||..+.......+..+.-..+.++.+|..|..+ +..+.+-.++..+.  +-..+|.. .  ...-..-..+.|
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~--eI~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK--EIRQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc--cEEEEeeccccccccccceeEECC
Confidence            445777786555655555566677889999999888777 66778888887652  22222321 1  111256678888


Q ss_pred             CCCEEEEeec
Q 047259          114 DGSFWVALIK  123 (225)
Q Consensus       114 ~G~l~v~~~~  123 (225)
                      +|.+..+...
T Consensus       398 d~~YvaAGS~  407 (459)
T KOG0288|consen  398 DGSYVAAGSA  407 (459)
T ss_pred             CCceeeeccC
Confidence            8776555544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=88.10  E-value=7.7  Score=36.44  Aligned_cols=78  Identities=18%  Similarity=0.060  Sum_probs=44.6

Q ss_pred             EEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CC--CCCCceEECCC
Q 047259           39 QLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LP--GGPDNINLAPD  114 (225)
Q Consensus        39 ~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~--g~Pd~i~~d~~  114 (225)
                      .|-.||..+++... +...-..--||||||||+ +..+....++|..|++...    .+.+.++ .+  +.--.|.+.=|
T Consensus       701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~----e~pv~Eg~gpvgtRgARi~wacd  775 (1012)
T KOG1445|consen  701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSR----EQPVYEGKGPVGTRGARILWACD  775 (1012)
T ss_pred             eeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCC----CCccccCCCCccCcceeEEEEec
Confidence            34445544333322 333445678999999998 6677778899999998631    1122221 11  12234555567


Q ss_pred             CCEEEEe
Q 047259          115 GSFWVAL  121 (225)
Q Consensus       115 G~l~v~~  121 (225)
                      |++.++.
T Consensus       776 gr~viv~  782 (1012)
T KOG1445|consen  776 GRIVIVV  782 (1012)
T ss_pred             CcEEEEe
Confidence            7755544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=87.92  E-value=25  Score=33.49  Aligned_cols=64  Identities=22%  Similarity=0.154  Sum_probs=41.7

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .||+++.|||+ +.++-.                   .+++.||+..|..-.. -..-..-+-+|++.||+ +|.+-...
T Consensus        15 i~d~afkPDGsqL~lAAg-------------------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aD   74 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAG-------------------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSAD   74 (1081)
T ss_pred             hheeEECCCCceEEEecC-------------------CEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCc
Confidence            37899999995 555522                   3899999876654332 23334568899999997 66665544


Q ss_pred             CEEEEE
Q 047259           80 FRCRRY   85 (225)
Q Consensus        80 ~~I~~~   85 (225)
                      ..|..+
T Consensus        75 K~VI~W   80 (1081)
T KOG1538|consen   75 KSVIIW   80 (1081)
T ss_pred             eeEEEe
Confidence            333333

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=87.69  E-value=29  Score=33.87  Aligned_cols=49  Identities=10%  Similarity=0.077  Sum_probs=32.3

Q ss_pred             EEEEeCCCCeEEEEecCcccc-ceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           40 LLKYDPELEETTVLHEGFYFA-NGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        40 v~~~d~~~~~~~~~~~~~~~p-nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      |-.++.++...+....+...| -++.++|++.+| .+.+.++.|+.|+++.
T Consensus       120 vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL-Avss~dG~v~iw~~~~  169 (933)
T KOG1274|consen  120 VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL-AVSSCDGKVQIWDLQD  169 (933)
T ss_pred             EEEEeccccchheeecccCCceeeeeEcCCCCEE-EEEecCceEEEEEccc
Confidence            444444434444445555555 589999999844 5556778999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=87.55  E-value=27  Score=33.29  Aligned_cols=79  Identities=16%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccce-eEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANG-VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnG-i~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ..+-|+|.++.  ....+...+...|-. +.|+|.|  .|++.....+..|++.... ....++|+.++.. -+=+.+.|
T Consensus       472 D~svRLWsl~t--~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~-~~PlRifaghlsD-V~cv~FHP  545 (707)
T KOG0263|consen  472 DSSVRLWSLDT--WSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDH-NKPLRIFAGHLSD-VDCVSFHP  545 (707)
T ss_pred             Ccceeeeeccc--ceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeeccc-CCchhhhcccccc-cceEEECC
Confidence            45678888774  344555566666654 8899986  7777766667777665332 3456777754432 23356666


Q ss_pred             CCCEEE
Q 047259          114 DGSFWV  119 (225)
Q Consensus       114 ~G~l~v  119 (225)
                      +.++..
T Consensus       546 Ns~Y~a  551 (707)
T KOG0263|consen  546 NSNYVA  551 (707)
T ss_pred             cccccc
Confidence            544333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=87.55  E-value=15  Score=34.35  Aligned_cols=139  Identities=11%  Similarity=0.035  Sum_probs=77.3

Q ss_pred             CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCCC-----CEEEEEEecCCCCCceeEEeccCCCCCCce
Q 047259           37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESWK-----FRCRRYWLKGPRQGRLESFIEHLPGGPDNI  109 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i  109 (225)
                      ...+++||+..++|..++.=  -..--|++.-  ++.||+.--..     +.|-+|++.++   .++....... .=.+.
T Consensus       348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~-~r~~~  421 (571)
T KOG4441|consen  348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLT-RRSGH  421 (571)
T ss_pred             cceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCC---cccccCCCCc-ceeee
Confidence            56899999998888885321  1223344443  23588875433     46888988753   3333332111 11233


Q ss_pred             EEC-CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccce
Q 047259          110 NLA-PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFV  187 (225)
Q Consensus       110 ~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~  187 (225)
                      ++. -+|.||+........                              +.-..|.++||. .++...-+.+..+   .-
T Consensus       422 gv~~~~g~iYi~GG~~~~~------------------------------~~l~sve~YDP~t~~W~~~~~M~~~R---~~  468 (571)
T KOG4441|consen  422 GVAVLGGKLYIIGGGDGSS------------------------------NCLNSVECYDPETNTWTLIAPMNTRR---SG  468 (571)
T ss_pred             EEEEECCEEEEEcCcCCCc------------------------------cccceEEEEcCCCCceeecCCccccc---cc
Confidence            333 368999998763321                              003578999997 5554443333322   12


Q ss_pred             eEEEEeCCEEEEeeCCC-----CeEEEEeCCC
Q 047259          188 TSAVEFEDNLYMASIQS-----KFVGKLPLNT  214 (225)
Q Consensus       188 t~~~~~~~~Lyv~~~~~-----~~i~~~~~~~  214 (225)
                      ..++.-++.||+..=..     ..|-+|+..+
T Consensus       469 ~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  469 FGVAVLNGKIYVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             ceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence            23555688999875332     2355565544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=87.37  E-value=16  Score=34.10  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=69.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeC------CCCEEEEEEecCCCCCceeEEecc-CCCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCES------WKFRCRRYWLKGPRQGRLESFIEH-LPGGPD  107 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd  107 (225)
                      -..+-+||+.+.+|+.++.-.  ..-.|.+.-  ++.||+.--      .-..+.+|++.++   .++..... .+-.--
T Consensus       395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~  469 (571)
T KOG4441|consen  395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGF  469 (571)
T ss_pred             cccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccc
Confidence            346889999988888875332  233344433  235999875      2357888998753   33332221 111112


Q ss_pred             ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccc
Q 047259          108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISF  186 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~  186 (225)
                      ++++- +|.||+...-....                               ....|.++||.. ++...-..+..   ..
T Consensus       470 g~a~~-~~~iYvvGG~~~~~-------------------------------~~~~VE~ydp~~~~W~~v~~m~~~---rs  514 (571)
T KOG4441|consen  470 GVAVL-NGKIYVVGGFDGTS-------------------------------ALSSVERYDPETNQWTMVAPMTSP---RS  514 (571)
T ss_pred             eEEEE-CCEEEEECCccCCC-------------------------------ccceEEEEcCCCCceeEcccCccc---cc
Confidence            34443 57899987642110                               134599999986 44433112222   12


Q ss_pred             eeEEEEeCCEEEEee
Q 047259          187 VTSAVEFEDNLYMAS  201 (225)
Q Consensus       187 ~t~~~~~~~~Lyv~~  201 (225)
                      ...++..++.||+..
T Consensus       515 ~~g~~~~~~~ly~vG  529 (571)
T KOG4441|consen  515 AVGVVVLGGKLYAVG  529 (571)
T ss_pred             cccEEEECCEEEEEe
Confidence            334566788998874

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.29  E-value=15  Score=30.29  Aligned_cols=79  Identities=19%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             cEEEEEeCCCCeEEEEecCc----cccceeEEecCCCEEEEEe--CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           38 GQLLKYDPELEETTVLHEGF----YFANGVALSKDENFVVVCE--SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~----~~pnGi~~~~dg~~Lyv~~--~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      |.+++++..  ..+.+....    ..+.-+++++||+.+.+..  ....+++.....+    .......  ........+
T Consensus         2 G~l~~~~~~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----~~~~~~~--g~~l~~PS~   73 (253)
T PF10647_consen    2 GQLVRVSGG--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----PVRPVLT--GGSLTRPSW   73 (253)
T ss_pred             CcEEEecCC--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----cceeecc--CCccccccc
Confidence            567776643  344443222    2577899999998665544  4556777776543    2222221  113345688


Q ss_pred             CCCCCEEEEeecC
Q 047259          112 APDGSFWVALIKM  124 (225)
Q Consensus       112 d~~G~l~v~~~~~  124 (225)
                      |++|.+|++....
T Consensus        74 d~~g~~W~v~~~~   86 (253)
T PF10647_consen   74 DPDGWVWTVDDGS   86 (253)
T ss_pred             cCCCCEEEEEcCC
Confidence            9999999998764

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.86  E-value=29  Score=33.05  Aligned_cols=148  Identities=18%  Similarity=0.189  Sum_probs=84.4

Q ss_pred             EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-e--cCccccceeEEecCCCEEEEEeCCCCE
Q 047259            5 VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-H--EGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         5 v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ++++++|.+.+|--+                  .+|..+|..+++.... .  +....-..++++||+..||.+. ....
T Consensus        25 ~~~s~nG~~L~t~~~------------------d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~l   85 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACG------------------DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQL   85 (775)
T ss_pred             eeECCCCCEEEEecC------------------ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccce
Confidence            677788877776432                  3566777666665321 1  2334557899999988665554 4556


Q ss_pred             EEEEEecCCCCCceeEEecc---CCCCC-CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           82 CRRYWLKGPRQGRLESFIEH---LPGGP-DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~---~~g~P-d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      +..|.+..+      .++..   ....| -.|++|+.|.+..+...                                  
T Consensus        86 lrv~~L~tg------k~irswKa~He~Pvi~ma~~~~g~LlAtgga----------------------------------  125 (775)
T KOG0319|consen   86 LRVWSLPTG------KLIRSWKAIHEAPVITMAFDPTGTLLATGGA----------------------------------  125 (775)
T ss_pred             EEEEEcccc------hHhHhHhhccCCCeEEEEEcCCCceEEeccc----------------------------------
Confidence            666777642      12221   11234 48999999855444433                                  


Q ss_pred             CcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCCCCeEEEEeCCCccc
Q 047259          158 DAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       158 ~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                        .+.|.+-|= .+..+-.+..-.|.    ++.+.++.   .+|..+..-...+.++++.....
T Consensus       126 --D~~v~VWdi~~~~~th~fkG~gGv----Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  126 --DGRVKVWDIKNGYCTHSFKGHGGV----VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             --cceEEEEEeeCCEEEEEecCCCce----EEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence              233434333 34555556543232    34445443   34557777778888888875544

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=86.65  E-value=13  Score=34.57  Aligned_cols=28  Identities=21%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLK   88 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~   88 (225)
                      +.-|++-.+.||. ||+...  +.|++|...
T Consensus       290 S~vnsL~~D~dGs-LWv~t~--~giv~~~~a  317 (671)
T COG3292         290 STVNSLWLDTDGS-LWVGTY--GGIVRYLTA  317 (671)
T ss_pred             ccccceeeccCCC-Eeeecc--CceEEEecc
Confidence            4458899999997 999876  578888754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=86.31  E-value=27  Score=32.03  Aligned_cols=79  Identities=15%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             CCcEEEEEeCCCCeEEEEecCc-----cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259           36 PHGQLLKYDPELEETTVLHEGF-----YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN  110 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~-----~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~  110 (225)
                      +.|.++.++...+.+.....-+     .+--.++|.++|+ +.-.|++ +-|+.+...+..+. .++++  .+|.--.++
T Consensus       220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~-G~i~Iw~~~~~~~~-k~~~a--H~ggv~~L~  294 (626)
T KOG2106|consen  220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSG-GNILIWSKGTNRIS-KQVHA--HDGGVFSLC  294 (626)
T ss_pred             CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCC-ceEEEEeCCCceEE-eEeee--cCCceEEEE
Confidence            4667777777655443322111     4556788888887 6556654 57777776543222 22333  234456778


Q ss_pred             ECCCCCEEE
Q 047259          111 LAPDGSFWV  119 (225)
Q Consensus       111 ~d~~G~l~v  119 (225)
                      +-.+|.|.-
T Consensus       295 ~lr~GtllS  303 (626)
T KOG2106|consen  295 MLRDGTLLS  303 (626)
T ss_pred             EecCccEee
Confidence            888888776

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=85.75  E-value=16  Score=33.49  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=53.8

Q ss_pred             CCCCcEEEEEeCCCCeEEE------EecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC-CCC
Q 047259           34 GKPHGQLLKYDPELEETTV------LHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP-GGP  106 (225)
Q Consensus        34 ~~~~g~v~~~d~~~~~~~~------~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-g~P  106 (225)
                      +-..|.|-.|+..+..+..      .......-..|.||+||+ .+.+-...+.+..+++... ...+.++. +++ .+|
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~-kkpL~~~t-gL~t~~~  411 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF-KKPLNVRT-GLPTPFP  411 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc-ccchhhhc-CCCccCC
Confidence            3447777777743222211      112233567899999998 5567777888888888641 12222333 233 234


Q ss_pred             -CceEECCCCCEEEEeec
Q 047259          107 -DNINLAPDGSFWVALIK  123 (225)
Q Consensus       107 -d~i~~d~~G~l~v~~~~  123 (225)
                       .+++|.|+..|.++...
T Consensus       412 ~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CCccccCCCceEEEeccc
Confidence             58999999999998776

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=85.71  E-value=22  Score=30.63  Aligned_cols=70  Identities=6%  Similarity=0.190  Sum_probs=43.4

Q ss_pred             CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCc
Q 047259          105 GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATY  183 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~  183 (225)
                      .++.-.+|+.|++..+..+                                    .|.+..++.+. +.+..+..-.   
T Consensus       155 sas~~~fdr~g~yIitGts------------------------------------KGkllv~~a~t~e~vas~rits---  195 (405)
T KOG1273|consen  155 SASHGVFDRRGKYIITGTS------------------------------------KGKLLVYDAETLECVASFRITS---  195 (405)
T ss_pred             ccccccccCCCCEEEEecC------------------------------------cceEEEEecchheeeeeeeech---
Confidence            3555578888887666655                                    57788888764 4454444311   


Q ss_pred             ccceeEE-EEeCCEEEEeeCCCCeEEEEeCC
Q 047259          184 ISFVTSA-VEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       184 ~~~~t~~-~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      ...+-.+ +...|+.++.+....-|..|++.
T Consensus       196 ~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  196 VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            1122222 33567777888887778888765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=85.33  E-value=11  Score=32.45  Aligned_cols=98  Identities=14%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE---EecCccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV---LHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |++.+.|...|.++-+.                 .+.|-.+|...-.++.   ..+.-..-..|.+.|.|.+|.|.. ..
T Consensus       176 n~l~FHPre~ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-dH  237 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-DH  237 (430)
T ss_pred             cceeecchhheEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-CC
Confidence            45556665555555443                 5666666653111111   223334456899999999776654 44


Q ss_pred             CEEEEEEecCCCCCceeEEeccC-----CCCCCceEECCCCCEEEEeec
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHL-----PGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~-----~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ..+..|++++     .+-|...-     .+.-......+.|+|||+...
T Consensus       238 p~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  238 PTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             CceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence            5667788764     23344211     122344567788999999766

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=84.82  E-value=1.1  Score=22.87  Aligned_cols=16  Identities=25%  Similarity=0.584  Sum_probs=12.6

Q ss_pred             CceEECCCCCEEEEee
Q 047259          107 DNINLAPDGSFWVALI  122 (225)
Q Consensus       107 d~i~~d~~G~l~v~~~  122 (225)
                      ..|..|++|+||++..
T Consensus         8 ~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    8 YSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEE-TTSCEEEEET
T ss_pred             EEEEEcCCcCEEEEeC
Confidence            4688999999999864

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.78  E-value=11  Score=33.23  Aligned_cols=61  Identities=13%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             ccceeEEecC-CCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEECCCCC-EEEEeec
Q 047259           59 FANGVALSKD-ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        59 ~pnGi~~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      |+.+|.|-++ -.+-|++-+..+.+..|++..    +.+.+...  ....-..+..+++|+ ||+++..
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~----qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~  268 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH----QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK  268 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcc----cCcceeEeccccCcceeeeecCCCcEEEEeccc
Confidence            6778888775 135889999999999999863    33344432  122235788888887 5666543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=84.77  E-value=21  Score=29.49  Aligned_cols=65  Identities=17%  Similarity=0.045  Sum_probs=37.6

Q ss_pred             ccceeEEecCCCEE-EEEe-CCCCEEEEEEecCCCCCceeEEec------cCCCCCCceEECCCCCEEEEeec
Q 047259           59 FANGVALSKDENFV-VVCE-SWKFRCRRYWLKGPRQGRLESFIE------HLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        59 ~pnGi~~~~dg~~L-yv~~-~~~~~I~~~~~~~~~~~~~~~~~~------~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .-..+.+||||.++ +|.. ...++|+.-.+..+..+....+..      ........+++-+++.|.|....
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence            34689999999877 4442 234677766554221221111111      11123567888888898887755

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=84.51  E-value=26  Score=30.32  Aligned_cols=70  Identities=23%  Similarity=0.118  Sum_probs=46.1

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCe---EEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEE---TTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~---~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .+|++.+||.-+.|....               +.-+||.++-- +.+   ++.-. ....|.-++|+||-+.+.|+--.
T Consensus        90 t~~~FsSdGK~lat~~~D---------------r~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   90 TDVAFSSDGKKLATISGD---------------RSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             eeeEEcCCCceeEEEeCC---------------ceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEcc
Confidence            368888899877776651               13344544311 111   11111 13479999999999988888888


Q ss_pred             CCEEEEEEec
Q 047259           79 KFRCRRYWLK   88 (225)
Q Consensus        79 ~~~I~~~~~~   88 (225)
                      .+.|+.|.+.
T Consensus       154 g~~l~vyk~~  163 (420)
T KOG2096|consen  154 GNKLCVYKLV  163 (420)
T ss_pred             CCEEEEEEee
Confidence            8899999875

>PRK13684 Ycf48-like protein; Provisional

Probab=84.47  E-value=26  Score=30.27  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             eEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEE-EecCCCCCceeEEeccCC-----CCCCceEECCCCCEEEEe
Q 047259           49 ETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRY-WLKGPRQGRLESFIEHLP-----GGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        49 ~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~-~~~~~~~~~~~~~~~~~~-----g~Pd~i~~d~~G~l~v~~  121 (225)
                      .++.+... ....++|++.++++ +|++... +.+ ++ ..+++  ...+...  .+     ...-++++.+++.+|++.
T Consensus       205 tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~-G~~-~~~s~d~G--~sW~~~~--~~~~~~~~~l~~v~~~~~~~~~~~G  277 (334)
T PRK13684        205 AWTPHQRNSSRRLQSMGFQPDGN-LWMLARG-GQI-RFNDPDDL--ESWSKPI--IPEITNGYGYLDLAYRTPGEIWAGG  277 (334)
T ss_pred             eEEEeeCCCcccceeeeEcCCCC-EEEEecC-CEE-EEccCCCC--Ccccccc--CCccccccceeeEEEcCCCCEEEEc
Confidence            35444322 34568899999887 5555432 333 34 23321  1111111  11     112456777788888865


Q ss_pred             ec
Q 047259          122 IK  123 (225)
Q Consensus       122 ~~  123 (225)
                      ..
T Consensus       278 ~~  279 (334)
T PRK13684        278 GN  279 (334)
T ss_pred             CC
Confidence            33

>PHA02790 Kelch-like protein; Provisional

Probab=84.42  E-value=32  Score=31.29  Aligned_cols=76  Identities=7%  Similarity=-0.073  Sum_probs=39.2

Q ss_pred             cEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC---CCEEEEEEecCCCCCceeEEeccCCCCC--Cce
Q 047259           38 GQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESW---KFRCRRYWLKGPRQGRLESFIEHLPGGP--DNI  109 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~g~P--d~i  109 (225)
                      ..+.+||+.+++++.+.+ +..|   .+.+. -+| .|||.--.   .+.+.+|+++.+   .++.... .+ .|  ...
T Consensus       331 ~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~-~~g-~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~-m~-~~r~~~~  402 (480)
T PHA02790        331 TSVERWFHGDAAWVNMPS-LLKPRCNPAVAS-INN-VIYVIGGHSETDTTTEYLLPNHD---QWQFGPS-TY-YPHYKSC  402 (480)
T ss_pred             CceEEEECCCCeEEECCC-CCCCCcccEEEE-ECC-EEEEecCcCCCCccEEEEeCCCC---EEEeCCC-CC-Cccccce
Confidence            457889988788877542 2222   12222 234 59987432   245778887642   3322111 11 12  222


Q ss_pred             EECCCCCEEEEe
Q 047259          110 NLAPDGSFWVAL  121 (225)
Q Consensus       110 ~~d~~G~l~v~~  121 (225)
                      +..-+|.|||..
T Consensus       403 ~~~~~~~IYv~G  414 (480)
T PHA02790        403 ALVFGRRLFLVG  414 (480)
T ss_pred             EEEECCEEEEEC
Confidence            333457888864

>PHA03098 kelch-like protein; Provisional

Probab=84.26  E-value=33  Score=31.38  Aligned_cols=141  Identities=11%  Similarity=-0.003  Sum_probs=72.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEEEEEeCC------CCEEEEEEecCCCCCceeEEeccCCC-CC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFVVVCESW------KFRCRRYWLKGPRQGRLESFIEHLPG-GP  106 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~g-~P  106 (225)
                      ...+++||+.+++|+.... +..|   ...+. -++ .+||.--.      .+.+.+|++.++   .++... ..|. .-
T Consensus       357 ~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~-~~p~~r~  429 (534)
T PHA03098        357 LNTVESWKPGESKWREEPP-LIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTN---KWSKGS-PLPISHY  429 (534)
T ss_pred             cceEEEEcCCCCceeeCCC-cCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCC---eeeecC-CCCcccc
Confidence            4568899998888887542 2222   22232 233 58886431      257899998643   232221 1221 11


Q ss_pred             CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCccc
Q 047259          107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYIS  185 (225)
Q Consensus       107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~  185 (225)
                      ...++--+|.||+.........                          ..  ....+.++|+. +++...-..|...   
T Consensus       430 ~~~~~~~~~~iyv~GG~~~~~~--------------------------~~--~~~~v~~yd~~~~~W~~~~~~~~~r---  478 (534)
T PHA03098        430 GGCAIYHDGKIYVIGGISYIDN--------------------------IK--VYNIVESYNPVTNKWTELSSLNFPR---  478 (534)
T ss_pred             CceEEEECCEEEEECCccCCCC--------------------------Cc--ccceEEEecCCCCceeeCCCCCccc---
Confidence            1223334578998875421100                          00  02358999987 5554332222211   


Q ss_pred             ceeEEEEeCCEEEEeeCC-----CCeEEEEeCCCc
Q 047259          186 FVTSAVEFEDNLYMASIQ-----SKFVGKLPLNTP  215 (225)
Q Consensus       186 ~~t~~~~~~~~Lyv~~~~-----~~~i~~~~~~~~  215 (225)
                      ....++..+++||+..=.     .+.+.+|+..+.
T Consensus       479 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        479 INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            112234458899886422     357888877654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=83.93  E-value=11  Score=30.93  Aligned_cols=65  Identities=17%  Similarity=0.096  Sum_probs=32.9

Q ss_pred             cCccccceeEEecCCCEEEEEeCCCCEEEEE-EecCC--CCCceeEEec-cCCCCCCceEECCCCCEEEEe
Q 047259           55 EGFYFANGVALSKDENFVVVCESWKFRCRRY-WLKGP--RQGRLESFIE-HLPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        55 ~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~-~~~~~--~~~~~~~~~~-~~~g~Pd~i~~d~~G~l~v~~  121 (225)
                      .+....+-|.++++|- ||..+.. +++++. ++++.  .-......+. ..=..+-.|...++|+||.+.
T Consensus       127 ~GW~~f~~vfa~~~Gv-LY~i~~d-g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~  195 (229)
T PF14517_consen  127 TGWNDFDAVFAGPNGV-LYAITPD-GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVK  195 (229)
T ss_dssp             SSGGGEEEEEE-TTS--EEEEETT-E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-
T ss_pred             CCCccceEEEeCCCcc-EEEEcCC-CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEe
Confidence            4455577888899985 8888855 477776 44431  1111112221 111235678888888888883

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=83.87  E-value=30  Score=30.52  Aligned_cols=59  Identities=15%  Similarity=0.065  Sum_probs=46.2

Q ss_pred             cccCCCCcEEEEEeCCCCeEEEE----ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           31 LVEGKPHGQLLKYDPELEETTVL----HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        31 ~~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ++.+.+...|+.+.+.+|.+..-    +..-..-.+|+|||.++.+|.+-+..+.|...++..
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs  289 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS  289 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence            55667777888888777877653    233345679999999999999999999999998864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=82.75  E-value=46  Score=31.87  Aligned_cols=136  Identities=17%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+-+||++.-  .+.-.+...-.+-..|+|.|-.+.-|++-+-+++|..+.+.+.   ++ ++..++..+-..+++.|+
T Consensus       389 DKTVRLWh~~~--~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~V-v~W~Dl~~lITAvcy~Pd  462 (712)
T KOG0283|consen  389 DKTVRLWHPGR--KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KV-VDWNDLRDLITAVCYSPD  462 (712)
T ss_pred             cccEEeecCCC--cceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC---ee-EeehhhhhhheeEEeccC
Confidence            45777777653  4555556667788899999977779999999999988887542   22 222245667788999999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEE--ECCCCCc--ccceeE
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDF--NDPNATY--ISFVTS  189 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~--~~p~g~~--~~~~t~  189 (225)
                      |..-|...-                                    .|....|+..| ++....  .+.+++.  -..+|+
T Consensus       463 Gk~avIGt~------------------------------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG  506 (712)
T KOG0283|consen  463 GKGAVIGTF------------------------------------NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG  506 (712)
T ss_pred             CceEEEEEe------------------------------------ccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence            986655543                                    45566666655 554443  3332321  124777


Q ss_pred             EEEe---CCEEEEeeCCCCeEEEEeCC
Q 047259          190 AVEF---EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       190 ~~~~---~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      +...   -.+|.|++ ...+|.+|++.
T Consensus       507 ~Q~~p~~~~~vLVTS-nDSrIRI~d~~  532 (712)
T KOG0283|consen  507 LQFFPGDPDEVLVTS-NDSRIRIYDGR  532 (712)
T ss_pred             eEecCCCCCeEEEec-CCCceEEEecc
Confidence            7543   25687776 45889999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=82.18  E-value=12  Score=33.16  Aligned_cols=57  Identities=18%  Similarity=0.160  Sum_probs=38.8

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF  117 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l  117 (225)
                      ..-+..++|+||+. ..++.+..+.++.++...   |......+.-..++.|.+.|+-+..
T Consensus       123 ~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~---G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  123 RDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA---GQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             ccchhhhhccCCCc-eeeeeeccceEEEEEecc---ceeEeeccccccccceeecchhhhh
Confidence            45688999999987 667778889999999863   3333222233456777777765433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.85  E-value=8.3  Score=33.42  Aligned_cols=61  Identities=18%  Similarity=0.099  Sum_probs=38.2

Q ss_pred             EEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            5 VIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEETTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         5 v~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      +.+++++ .|||+-...             ....-.||+++.+ +++++++.........+.+|||++++..+-++
T Consensus       286 ~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  286 LGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             ceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            3455554 688885541             1224578999988 77877765443333589999999866555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=81.52  E-value=13  Score=33.94  Aligned_cols=60  Identities=12%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ..||+|+|-...|+|+--..-+|+.||....... ..+.. ..|  -..+++.++|.++++...
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y-~~P--lstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTY-SHP--LSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             cCcceecCCccceEEEecccceEEEeeccccccc-ceeee-cCC--cceeeecCCceEEEeecC
Confidence            4799999998889999999999999998632111 11111 122  257888888888777665

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=81.48  E-value=1.4  Score=38.30  Aligned_cols=52  Identities=13%  Similarity=0.082  Sum_probs=40.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEec
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLK   88 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~   88 (225)
                      ..+.|+.||..++.....+.-...+|+|+|.| +.+.|++..-...+|-||+.
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             cCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence            46678888876655433333456899999999 66799999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=81.45  E-value=30  Score=31.16  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             ccceeEEecCCCEEEEEeCCCCEEEEEEec--CCCCCceeEEe-ccCCC---CCCceEECCCCCEEEEeecCCchhhhhh
Q 047259           59 FANGVALSKDENFVVVCESWKFRCRRYWLK--GPRQGRLESFI-EHLPG---GPDNINLAPDGSFWVALIKMNQTGVRAI  132 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~--~~~~~~~~~~~-~~~~g---~Pd~i~~d~~G~l~v~~~~~~~~~~~~~  132 (225)
                      --|...|||.+.. .++....+.|..|+-.  +.......... ....+   -|---++|++-++.+...-         
T Consensus       371 sV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---------  440 (498)
T KOG4328|consen  371 SVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---------  440 (498)
T ss_pred             eeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc---------
Confidence            3478889999987 6777788899999863  11111111111 01111   2455667776665444332         


Q ss_pred             hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEe
Q 047259          133 QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLP  211 (225)
Q Consensus       133 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~  211 (225)
                                                 ...|-.+|+.| +.+..+++|.-..++......+-+..+.-+...++.|+++.
T Consensus       441 ---------------------------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  441 ---------------------------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             ---------------------------CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence                                       22478899885 56888888876445545444454555666677777777664

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.11  E-value=4.9  Score=22.56  Aligned_cols=23  Identities=13%  Similarity=0.023  Sum_probs=15.4

Q ss_pred             ccccceeEEecCCCEEEEEeCCC
Q 047259           57 FYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      ...-...+|+|||+.|+++....
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT
T ss_pred             CccccCEEEecCCCEEEEEecCC
Confidence            34456789999999887665443

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=80.60  E-value=43  Score=33.09  Aligned_cols=65  Identities=14%  Similarity=0.060  Sum_probs=50.2

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCc
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQ  126 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~  126 (225)
                      .---.++|+||+. ++++-+..++|..|+..+  ....+++. ...+.+.|+++||-|+++.+....|.
T Consensus       130 ~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrt  194 (942)
T KOG0973|consen  130 SDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRT  194 (942)
T ss_pred             CccceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeee-cccccccceEECCccCeeeeecCCce
Confidence            3456799999986 889999999999998764  23444444 34567899999999999998887653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=80.54  E-value=45  Score=30.35  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=30.1

Q ss_pred             CCcEEEEEeCCCCeEEEEecCcc-------ccceeEEecCCCEEEEEeC--------CCCEEEEEEecC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFY-------FANGVALSKDENFVVVCES--------WKFRCRRYWLKG   89 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~-------~pnGi~~~~dg~~Lyv~~~--------~~~~I~~~~~~~   89 (225)
                      ..|.|+.+|.++|+..=..+...       .-...++..  ..+|+...        ..+.|+.++.++
T Consensus       118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~T  184 (488)
T cd00216         118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVET  184 (488)
T ss_pred             CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCC
Confidence            36788999988776432221111       123445553  35777653        246788888764

The alignment model contains an 8-bladed beta-propeller.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-13
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		5e-13
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		2e-12

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 5   VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
            ++   G +YFT  S  Y      + +      G+L+KYDP  +ETT+L +  +   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191
Query: 65  LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           +S D +FV+V E    +  +YWL+GP++G  E  ++ +P  P NI    DG FWV+
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 5   VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
            ++   G +YFT  S  Y      + +      G+L+KYDP  +ETT+L +  +   G  
Sbjct: 123 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 182
Query: 65  LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           +S D +FV+V E    +  +YWL+GP++G  E  ++ +P  P NI    DG FWV+
Sbjct: 183 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 5   VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVA 64
            ++   G +YFT  S  Y      +        G+L KYDP  +ETT+L +  +   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 65  LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           +S D +FV+V E    +  +YWL+GP++G  E  ++ +P  P NI    DG FWV+
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	3e-52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	7e-31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	1e-16
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	7e-13
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	7e-12
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	6e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  170 bits (431), Expect = 3e-52
 Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 29/221 (13%)

Query: 1   FTNDV-IEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF 59
           +   V ++   G +YFT  S  Y      + +      G+L+KYDP  +ETT+L +  + 
Sbjct: 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV 186

Query: 60  ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV 119
             G  +S D +FV+V E    +  +YWL+GP++G  E  ++     P NI    DG FWV
Sbjct: 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPNPGNIKRNADGHFWV 244

Query: 120 ALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP 179
           +  +                           L   +      + +K D  G I+     P
Sbjct: 245 SSSEE--------------------------LDGNMHGRVDPKGIKFDEFGNILEVIPLP 278

Query: 180 NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELA 220
                       E +  LY+ ++    VG L  +       
Sbjct: 279 PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGNSFV 319

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  115 bits (288), Expect = 7e-31
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 23/206 (11%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           ND++       Y T       P     ++  G     +  Y P   +  V+ EGF FANG
Sbjct: 168 NDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANG 225

Query: 63  VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVAL 121
           + +S D  +V + E    +   Y             +       DNI++ P  G  WV  
Sbjct: 226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 284

Query: 122 IKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNA 181
                         P   ++L                   RI  + +    +      N 
Sbjct: 285 HPNGMRIFFYDAENPPGSEVL-------------------RIQDILSEEPKVTVVYAENG 325

Query: 182 TYISFVTSAVEFEDNLYMASIQSKFV 207
           T +   T A  ++  L + ++  K +
Sbjct: 326 TVLQGSTVAAVYKGKLLIGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           ND     +G+L+ T  +     A         +  G +  +  + +   V    F F NG
Sbjct: 120 NDCAFDYEGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNG 176

Query: 63  VALSKDEN----FVVVCESWKFRCRRYWLKGPRQGRLE------SFIEHLPGGPDNINLA 112
           +A+    +     ++V E+   +   Y +KGP   ++E             GG D ++  
Sbjct: 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFD 234

Query: 113 PDGSFWVAL 121
            D +  VA 
Sbjct: 235 EDNNLLVAN 243

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 16/124 (12%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           +D++  S G  YFT          Y        P G +    P+    T + +    ANG
Sbjct: 138 DDMVFDSKGGFYFT------DFRGY-----STNPLGGVYYVSPDFRTVTPIIQNISVANG 186

Query: 63  VALSKDENFVVVCESWKFRCRRYWLK-----GPRQGRLESFIEHLPGGPDNINLAPDGSF 117
           +ALS DE  + V E+   R  R  L+         G    +      GPD+  +  D + 
Sbjct: 187 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 246

Query: 118 WVAL 121
           +VA+
Sbjct: 247 YVAM 250

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 62.4 bits (152), Expect = 7e-12
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 6/123 (4%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           ND+I A DG+++FT                    H  + +  P+      +       NG
Sbjct: 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-ADLDHPNG 192

Query: 63  VALSKDENFVVVCESWKFRCRRYWLK--GPRQGRLES---FIEHLPGGPDNINLAPDGSF 117
           +A S DE  + V ++ +       +     R G L     F     G PD   +   G  
Sbjct: 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252

Query: 118 WVA 120
           W +
Sbjct: 253 WSS 255

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 7/122 (5%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANG 62
           NDV  A DGSL+F+  +      E         P   + +  P+   +  +       NG
Sbjct: 118 NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPI-RDRVKPNG 176

Query: 63  VALSKDENFVVVCESWKFRCRRYWLKGPRQGRLES---FIEHLPGGPDNINLAPDGSFWV 119
           +A     N +V  ++      RY L     G  E         PG  D + +   G  W 
Sbjct: 177 LAFLPSGNLLVS-DTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWA 233

Query: 120 AL 121
           + 
Sbjct: 234 SA 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPA------EYYKDLVEGKPHGQLLKYD-PELEETTVL 53
           F  +V+  +   L   + +++  P+         +D +         KY+   L+    L
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKL 140

Query: 54  HEGFYFANGVALSKDENFVV--------------VCESWKFRCRR----YWLKGPRQGRL 95
            +         L   +N ++              VC S+K +C+     +WL        
Sbjct: 141 RQALL-----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 96  ESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL 155
           E+ +E L      +    D + W +    +      I S   + + L       N L+ L
Sbjct: 196 ETVLEML----QKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 156 GN----------DAGARIVKVDTHGKIIMDFNDPNAT-YISFVTSAVEFEDNLYMASIQS 204
            N          +   +I+ + T  K + DF     T +IS    ++    +  + S+  
Sbjct: 251 LNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLL 308

Query: 205 KFVG----KLPLNTPEA 217
           K++      LP    E 
Sbjct: 309 KYLDCRPQDLP---REV 322

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F N +   SD       S +          +   +P G +    P L  +        F 
Sbjct: 118 FLNGITPLSDTQYLTADSYRGAIWL-----IDVVQPSGSIWLEHPMLARSNSES---VFP 169

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQ-GRLESFIEHLPGGPDNINLAPDGSFWV 119
               L +  NF+ V  + K    R  +    + G  E F+E      D+     +G+ + 
Sbjct: 170 AANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYG 227

Query: 120 ALIKMNQ 126
           A    N 
Sbjct: 228 ATHIYNS 234

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 21/121 (17%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
           F  ++  A DG+++ T             +       G+++   P+     +        
Sbjct: 33  FLENLASAPDGTIFVT-------------NH----EVGEIVSITPD-GNQQIHATVEGKV 74

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN-INLAPDGSFWV 119
           +G+A + + + V     W              G +E+ +        N I    D  +  
Sbjct: 75  SGLAFTSNGDLVAT--GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132

Query: 120 A 120
           A
Sbjct: 133 A 133

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 44/226 (19%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHEGFYFAN 61
             +  +  G ++ T                       +   + + + T   L        
Sbjct: 18  YGITVSDKGKVWITQHK-----------------ANMISCINLDGKITEYPLPTPDAKVM 60

Query: 62  GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG-GPDNINLAPDGSFWVA 120
            + +S D   V   E+   +  R      ++G ++ +    P   P  I   P+G  W  
Sbjct: 61  CLTISSDGE-VWFTENAANKIGRI----TKKGIIKEYTLPNPDSAPYGITEGPNGDIWFT 115

Query: 121 ------LIKMNQTGVRAIQSCPDKWKLLQAYPELI------NLLIPLGNDAGARIVKVDT 168
                 + ++   G       P+K     +YP  I       L      +    I ++  
Sbjct: 116 EMNGNRIGRITDDGKIREYELPNKG----SYPSFITLGSDNALWFT--ENQNNAIGRITE 169

Query: 169 HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
            G I        A+    +      +D L+   I    +G++  + 
Sbjct: 170 SGDITEFKIPTPASGPVGI--TKGNDDALWFVEIIGNKIGRITTSG 213

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 44/226 (19%)

Query: 3   NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHEGFYFAN 61
             +  + DG ++FT                      ++   D         +        
Sbjct: 23  YGITSSEDGKVWFTQHK-----------------ANKISSLDQSGRIKEFEVPTPDAKVM 65

Query: 62  GVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG-GPDNINLAPDGSFWVA 120
            + +S   + +   E+   +  +      ++G    +    P  GP  I    +G  W  
Sbjct: 66  CLIVSSLGD-IWFTENGANKIGKL----SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFT 120

Query: 121 ------LIKMNQTGVRAIQSCPDKWKLLQAYPELI------NLLIPLGNDAGARIVKVDT 168
                 + K+   G       P+K     +YP  I       L      +    I ++  
Sbjct: 121 QLNGDRIGKLTADGTIYEYDLPNKG----SYPAFITLGSDNALWFT--ENQNNSIGRITN 174

Query: 169 HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT 214
            GK+       NA     +      +  L+   I    +G++    
Sbjct: 175 TGKLEEYPLPTNAAAPVGI--TSGNDGALWFVEIMGNKIGRITTTG 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.93
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.84
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.84
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.75
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.73
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.72
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.7
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.65
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.64
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.6
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.52
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.52
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.45
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.36
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.34
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.33
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.33
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.3
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.23
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.17
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.17
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.16
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.12
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.08
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.05
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.03
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.03
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.01
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.0
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.99
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.98
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.93
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.84
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.78
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.77
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.77
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.75
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.72
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.66
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.6
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.58
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.57
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.52
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.47
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.43
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.41
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.27
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.27
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.25
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.22
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.21
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.19
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.18
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.18
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.18
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.16
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.12
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.11
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.09
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.08
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.07
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.06
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.03
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.02
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.01
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.98
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.96
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.9
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.84
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.84
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.81
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.8
3ott_A	758	Two-component system sensor histidine kinase; beta	97.78
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.78
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.76
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.73
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.73
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.72
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.72
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.72
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.71
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.7
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.68
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.68
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.68
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.63
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.62
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.6
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.6
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.59
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.59
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.59
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.58
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.57
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.56
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.55
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.51
3ott_A	758	Two-component system sensor histidine kinase; beta	97.51
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.49
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.44
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.44
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.43
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.43
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.42
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.42
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.41
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.38
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.38
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.38
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.38
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.35
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.3
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.29
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.28
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.28
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.27
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.27
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.26
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.24
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.24
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.21
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.18
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.17
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.14
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.12
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.12
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.11
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.11
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.09
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.07
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.07
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.06
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.06
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.02
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.01
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.01
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.01
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.99
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.99
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	96.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.87
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.82
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.81
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.65
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.63
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.62
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.59
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.57
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.54
3jro_A	753	Fusion protein of protein transport protein SEC13	96.53
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.52
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.47
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.42
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.4
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.36
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.35
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.31
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.28
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.27
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.26
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.18
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.18
3jro_A	753	Fusion protein of protein transport protein SEC13	96.17
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.12
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.02
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	95.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.82
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.78
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	95.75
2pm7_B	297	Protein transport protein SEC13, protein transport	95.71
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.24
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.16
2pm7_B	297	Protein transport protein SEC13, protein transport	95.08
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	94.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.53
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.41
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	93.98
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	93.73
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	93.71
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	93.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.39
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.37
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	92.56
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	92.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	91.04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	90.67
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	90.52
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	90.09
3s9j_A	369	Member of DUF4221 family; 6-bladed beta-propeller,	89.79
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.33
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	86.98
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	86.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.95
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	85.79
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	84.79
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	84.51
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.29
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	82.25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	81.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	80.32

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.95  E-value=3.4e-26  Score=193.56  Aligned_cols=189  Identities=27%  Similarity=0.444  Sum_probs=151.3

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      +|||+++++ +|+||||++...+++..+...+++....|+|+++|+++++++.+...+..||||++++||+.|||+++..
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC
Confidence            589999999 9999999987445544444444555678999999998788888777889999999999999999999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      ++|++|++++...+..+.+.+ .++ |+||++|++|+|||+....+..+                 |.       ..  .
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~-----------------~~-------~~--~  258 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGN-----------------MH-------GR--V  258 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSS-----------------TT-------SC--E
T ss_pred             CeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCccccc-----------------cc-------CC--C
Confidence            999999998655566667764 567 99999999999999998743211                 00       01  1


Q ss_pred             ceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      .+.|.++|++|+++..+..|+|..+..++.++..+++|||++...++|.+|+++...-
T Consensus       259 ~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~~  316 (322)
T 2fp8_A          259 DPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGN  316 (322)
T ss_dssp             EEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-----
T ss_pred             ccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecccccC
Confidence            5789999999999999999887656778888888999999999999999999876543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.93  E-value=6.5e-25  Score=189.10  Aligned_cols=183  Identities=21%  Similarity=0.303  Sum_probs=141.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchh-hhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEY-YKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~-~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      +|||++++++|++|+|++.- |.-..+ ..+...+.+.|+||++++.  +++.+.+++..||||+|||||++|||+++..
T Consensus       166 ~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~  242 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLA  242 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCS-CSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             CCceEEEeCCCCEEecCCcE-eCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCC
Confidence            48999999999999999851 221111 1123345678999999984  7788889999999999999999999999999


Q ss_pred             CEEEEEEecC-CCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           80 FRCRRYWLKG-PRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        80 ~~I~~~~~~~-~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      ++|++|+++. +.++..++|  ..++.||||++|+ +|++|++.+.....+..+             -|.       ..+
T Consensus       243 ~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~-------------~P~-------~~~  300 (355)
T 3sre_A          243 HKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFY-------------DAE-------NPP  300 (355)
T ss_dssp             TEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESCHHHHHSC-------------CTT-------SCC
T ss_pred             CeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCCceEEEEE-------------CCC-------CCC
Confidence            9999999974 345556666  3578999999999 599999876422111111             111       112


Q ss_pred             CcceEEEEEC----CCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeC
Q 047259          158 DAGARIVKVD----THGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       158 ~~~~~V~~~d----~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~  212 (225)
                        ...|.|+.    .++++.+++++ +|+.++.+|.++..+++||+++...+ +..|++
T Consensus       301 --~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          301 --GSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             --CEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             --CCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence              67888887    46889999998 89999999999999999999999877 777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.9e-19  Score=150.94  Aligned_cols=165  Identities=18%  Similarity=0.281  Sum_probs=125.4

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhh--hcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYK--DLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~--~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .||+++++++|+|||||+.  +|......  ....+...+.|+++|+++++++.+. .+..|||++++||++.||++++.
T Consensus       132 ~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          132 SPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             CCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECC
T ss_pred             CCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecC
Confidence            3899999999999999985  33211100  0112234678999999778888777 88899999999999999999987


Q ss_pred             C-----CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           79 K-----FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        79 ~-----~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      .     ++|++|++++..+...+++.....+.|++|++|++|+||++...                              
T Consensus       209 ~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~------------------------------  258 (305)
T 3dr2_A          209 EQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT------------------------------  258 (305)
T ss_dssp             C---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS------------------------------
T ss_pred             CcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC------------------------------
Confidence            4     89999998753344455665444678999999999999998732                              


Q ss_pred             cCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCC
Q 047259          154 PLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                              .|.+++++|+.+..+..|.+     ++.++.  +++.||+++.  +.+++++++
T Consensus       259 --------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~~~~  305 (305)
T 3dr2_A          259 --------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWMLPLP  305 (305)
T ss_dssp             --------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEEECC
T ss_pred             --------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEEECC
Confidence                    49999999999999988753     344454  4578999985  578887653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.84  E-value=1.4e-19  Score=151.26  Aligned_cols=156  Identities=19%  Similarity=0.272  Sum_probs=121.8

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ||+++++++|+||++++....  .    ........+.||+++++ +++..+...+..||||+++||++.||++++..++
T Consensus       100 ~~di~~d~dG~l~~~~~~~~~--~----~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~  172 (297)
T 3g4e_A          100 FNDGKVDPAGRYFAGTMAEET--A----PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYS  172 (297)
T ss_dssp             EEEEEECTTSCEEEEEEECCS--B----TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CCCEEECCCCCEEEecCCccc--c----cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCc
Confidence            689999999999999875210  0    00112357899999986 7777777888999999999999999999999999


Q ss_pred             EEEEEec--CCCCCceeEEecc--CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           82 CRRYWLK--GPRQGRLESFIEH--LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        82 I~~~~~~--~~~~~~~~~~~~~--~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      |++|+++  ++.+...+++...  ..+.|++|++|++|+||++.+.                                  
T Consensus       173 i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----------------------------------  218 (297)
T 3g4e_A          173 VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----------------------------------  218 (297)
T ss_dssp             EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----------------------------------
T ss_pred             EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----------------------------------
Confidence            9999974  2333344556542  2367999999999999999987                                  


Q ss_pred             CcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe---CCEEEEeeCCC
Q 047259          158 DAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF---EDNLYMASIQS  204 (225)
Q Consensus       158 ~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~---~~~Lyv~~~~~  204 (225)
                        .+.|.++|++ |+++..+..|..    .++.+++.   .++|||++...
T Consensus       219 --~~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          219 --GGRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             --TTEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred             --CCEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence              5689999998 999999988743    36667664   37999998753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=1.5e-17  Score=138.08  Aligned_cols=167  Identities=19%  Similarity=0.232  Sum_probs=125.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhh--hcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYK--DLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~--~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .||+++++++|+||+|++.  +|......  ........+.||+++++ ++++.+......|+||+++|||+.| ++++.
T Consensus       116 ~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~  191 (296)
T 3e5z_A          116 SPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTG  191 (296)
T ss_dssp             CCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETT
T ss_pred             CCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCC
Confidence            4789999999999999874  11100000  00112246799999987 8888888888999999999999977 99999


Q ss_pred             CCEEEEEEec-CCCC-CceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 KFRCRRYWLK-GPRQ-GRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~~~I~~~~~~-~~~~-~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      .++|++|+++ .+.. ...+++ ....+.|++|++|++|+||++. .                                 
T Consensus       192 ~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~---------------------------------  236 (296)
T 3e5z_A          192 DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-G---------------------------------  236 (296)
T ss_dssp             TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-T---------------------------------
T ss_pred             CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-C---------------------------------
Confidence            9999999986 2223 334555 4455689999999999999998 3                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE---eCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE---FEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~---~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                          +.|.+++++|+.+..+..+.+     ++.++.   +++.||+++.  +.+.++++.+..-
T Consensus       237 ----~~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~  289 (296)
T 3e5z_A          237 ----DGVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRGL  289 (296)
T ss_dssp             ----TEEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEECSCCBC
T ss_pred             ----CeEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEcccccc
Confidence                268999999999988887654     344444   2468999985  6899998876543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.78  E-value=1.3e-17  Score=147.33  Aligned_cols=160  Identities=13%  Similarity=0.107  Sum_probs=123.5

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE-EEEe--cCccccceeEEecCCCEEEEEe
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET-TVLH--EGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~--~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      +|+++++++ +|+|||++..                 .++|++++++++++ +.+.  .....+++|+++|+|++|||++
T Consensus       229 ~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            489999999 8999999986                 67999999977776 4433  2345667899999999999999


Q ss_pred             CCCCEEEEEEecC--CCCCceeEEecc--CC------------CCCCceEE---------CCCCCEEEEeecCCchhhhh
Q 047259           77 SWKFRCRRYWLKG--PRQGRLESFIEH--LP------------GGPDNINL---------APDGSFWVALIKMNQTGVRA  131 (225)
Q Consensus        77 ~~~~~I~~~~~~~--~~~~~~~~~~~~--~~------------g~Pd~i~~---------d~~G~l~v~~~~~~~~~~~~  131 (225)
                      +..++|+++++++  ..+....+++..  ..            ..|.+|++         |++|+|||++..        
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~--------  363 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD--------  363 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT--------
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC--------
Confidence            9999999999863  223333444431  11            24888999         999999999987        


Q ss_pred             hhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCC--------C-----CcccceeEEEEe--CCE
Q 047259          132 IQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN--------A-----TYISFVTSAVEF--EDN  196 (225)
Q Consensus       132 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~--------g-----~~~~~~t~~~~~--~~~  196 (225)
                                                  ..+|.+++++|++......+.        |     ..+..|.+++.+  ++.
T Consensus       364 ----------------------------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  415 (433)
T 4hw6_A          364 ----------------------------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC  415 (433)
T ss_dssp             ----------------------------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             ----------------------------CCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence                                        568999999997765543211        1     125668888766  799


Q ss_pred             EEEeeCCCCeEEEEeCC
Q 047259          197 LYMASIQSKFVGKLPLN  213 (225)
Q Consensus       197 Lyv~~~~~~~i~~~~~~  213 (225)
                      |||++..+++|.++.+.
T Consensus       416 lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          416 FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEecC
Confidence            99999999999999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=5.8e-17  Score=142.97  Aligned_cols=160  Identities=14%  Similarity=0.148  Sum_probs=122.9

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      +|+++++++ +|.|||+|..                 .++|++++++++....+.  ....+|+||+++|+|++|||++.
T Consensus       227 ~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            589999999 8999999987                 679999999866653332  34568999999999999999999


Q ss_pred             CCCEEEEEEecCC--CCCceeEEecc--C------------CCCCC-ceEE--------CCCCCEEEEeecCCchhhhhh
Q 047259           78 WKFRCRRYWLKGP--RQGRLESFIEH--L------------PGGPD-NINL--------APDGSFWVALIKMNQTGVRAI  132 (225)
Q Consensus        78 ~~~~I~~~~~~~~--~~~~~~~~~~~--~------------~g~Pd-~i~~--------d~~G~l~v~~~~~~~~~~~~~  132 (225)
                      ..++|++++.++.  .+....+++..  .            -..|. ++++        |++|+|||++..         
T Consensus       290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~---------  360 (430)
T 3tc9_A          290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE---------  360 (430)
T ss_dssp             TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG---------
T ss_pred             CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC---------
Confidence            9999999998752  12223334321  0            11477 8888        567999999988         


Q ss_pred             hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC--------CC-----CcccceeEEEEe--CCEE
Q 047259          133 QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP--------NA-----TYISFVTSAVEF--EDNL  197 (225)
Q Consensus       133 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p--------~g-----~~~~~~t~~~~~--~~~L  197 (225)
                                                 +.+|.+++++|++.......        +|     ..+..|.+++.+  ++.|
T Consensus       361 ---------------------------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l  413 (430)
T 3tc9_A          361 ---------------------------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECF  413 (430)
T ss_dssp             ---------------------------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred             ---------------------------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEE
Confidence                                       56899999999876665431        11     125578888765  5999


Q ss_pred             EEeeCCCCeEEEEeCC
Q 047259          198 YMASIQSKFVGKLPLN  213 (225)
Q Consensus       198 yv~~~~~~~i~~~~~~  213 (225)
                      ||++..+++|.++.+.
T Consensus       414 yVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          414 FIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEGGGTEEEEEEEC
T ss_pred             EEEECCCCeEEEEccC
Confidence            9999999999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.76  E-value=8.5e-17  Score=135.06  Aligned_cols=145  Identities=18%  Similarity=0.185  Sum_probs=106.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-----------ecCccccceeEEecCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-----------HEGFYFANGVALSKDE   69 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-----------~~~~~~pnGi~~~~dg   69 (225)
                      |+|+++..+++++|+++..                 .|+||++|..+++.+..           ...+..||||  ++|+
T Consensus       118 ~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          118 FLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             CEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             ccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            3455665555666776654                 67999999875533321           1345689999  8999


Q ss_pred             CEEEEEeCCCCEEEEEEecC-CCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhh
Q 047259           70 NFVVVCESWKFRCRRYWLKG-PRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPEL  148 (225)
Q Consensus        70 ~~Lyv~~~~~~~I~~~~~~~-~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~  148 (225)
                      +.|||+++..++|++|++++ +.++..+++.. . ..|++|++|++|+|||++..                         
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~-------------------------  231 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHI-------------------------  231 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBT-------------------------
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCC-------------------------
Confidence            99999999999999999975 33455566653 2 46999999999999999987                         


Q ss_pred             hhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-----CCEEEEeeCCC
Q 047259          149 INLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-----EDNLYMASIQS  204 (225)
Q Consensus       149 ~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-----~~~Lyv~~~~~  204 (225)
                                 .++|.+++++|++......+.+  +..++.++..     +++|||++..+
T Consensus       232 -----------~~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          232 -----------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -----------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -----------CCeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence                       5689999999988544333322  3457777763     38999998763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.75  E-value=8.5e-17  Score=138.14  Aligned_cols=157  Identities=13%  Similarity=0.105  Sum_probs=121.8

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|+++++++ .|+||+||..                 .++|++++.+....+.+. ..+..|+||+++|+++.||++++.
T Consensus       117 ~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~  179 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG  179 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS
T ss_pred             CccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC
Confidence            378999997 6789999987                 568999998744444444 567899999999988899999999


Q ss_pred             C-CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 K-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . ++|+|+++++.   ..+++....-..|+||++|+ +|+||+++..                                 
T Consensus       180 ~~~~I~r~~~dG~---~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~---------------------------------  223 (349)
T 3v64_C          180 NTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK---------------------------------  223 (349)
T ss_dssp             SSCEEEEEETTSC---SCEESCCSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCEEEEEeCCCC---CcEEEEECCCCCcceEEEeCCCCEEEEEECC---------------------------------
Confidence            8 99999999863   33334322234699999996 6789999987                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEe-CCCcc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLP-LNTPE  216 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~-~~~~~  216 (225)
                         ...|.+++.+|.....+... +  +..+.+++..+++||++++.+++|.+++ .++..
T Consensus       224 ---~~~I~~~~~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          224 ---HHVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             ---TTEEEEEETTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             ---CCEEEEEeCCCCceEEEEeC-C--CCCceEEEEECCEEEEecCCCCeEEEEEccCCCc
Confidence               56899999998765554431 1  3457777778999999999999999998 45443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.75  E-value=1.6e-16  Score=134.40  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=121.5

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++. .|+||++|..                 .++|.+++.+....+.+. ..+..|+||+++|+++.||+++.+
T Consensus        78 ~p~glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~  140 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  140 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             CcCEEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence            378999996 6789999987                 578999998744455554 467899999999988889999988


Q ss_pred             C-CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 K-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . ++|++++++|.   ..+++....-..|+||++|+ +++||+++..                                 
T Consensus       141 ~~~~I~~~~~dG~---~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~---------------------------------  184 (316)
T 1ijq_A          141 TPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---------------------------------  184 (316)
T ss_dssp             SSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCeEEEEcCCCC---CeEEEEECCCCCceEEEEeccCCEEEEEECC---------------------------------
Confidence            6 89999999863   33444432234799999996 5789999977                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                         ...|.++|.+|...+.+....+. +..+.+++.++++||++++.+++|.+++..
T Consensus       185 ---~~~I~~~d~dg~~~~~~~~~~~~-~~~P~giav~~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          185 ---LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             ---TTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ---CCeEEEEecCCCceEEEeecCCc-cCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence               56899999998766555432122 456777777889999999999999999863

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=1.4e-16  Score=132.29  Aligned_cols=172  Identities=18%  Similarity=0.273  Sum_probs=126.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEe----cCCCEEEEEe
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALS----KDENFVVVCE   76 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~----~dg~~Lyv~~   76 (225)
                      .|++++++++|++|+++.....-...+  ........+.|++++++ ++.+.+......|++++++    +||+.||+++
T Consensus       118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          118 GCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence            378999999999999987521000000  00112346899999987 7777776777889999999    9998899999


Q ss_pred             CCCCEEEEEEec-CCCCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh
Q 047259           77 SWKFRCRRYWLK-GPRQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL  151 (225)
Q Consensus        77 ~~~~~I~~~~~~-~~~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  151 (225)
                      +..++|++|+++ .+.....+.+.. .+    +.|+++++|++|++|++...                            
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~i~~d~~G~l~v~~~~----------------------------  245 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGH-IPGTHEGGADGMDFDEDNNLLVANWG----------------------------  245 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEE-CCCCSSCEEEEEEEBTTCCEEEEEET----------------------------
T ss_pred             CCCCeEEEEECCCCCccccceEEEE-CCCCCCCCCCceEECCCCCEEEEEcC----------------------------
Confidence            999999999986 222222333432 22    56999999999999999876                            


Q ss_pred             hccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe-C-CEEEEeeCCCCeEEEEeCCCcc
Q 047259          152 LIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-E-DNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       152 ~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~-~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                              .+.|.++|++ |+.+..+..+..    .++.++.. + ..||+++...+.|.++++....
T Consensus       246 --------~~~i~~~d~~~g~~~~~~~~~~~----~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          246 --------SSHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             --------TTEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             --------CCEEEEEcCCCCcEeEEEeCCCC----CceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence                    4589999998 888777876532    35556543 4 4599999999999999987643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.73  E-value=2.5e-16  Score=133.71  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=122.0

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++. .|+||+||..                 .++|.+++.+....+.+. ..+..|+||+++|+++.||+++.+
T Consensus        80 ~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~  142 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG  142 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS
T ss_pred             CccEEEEEcCCCeEEEEECC-----------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            488999996 6789999987                 578999998744444444 678899999999988889999976


Q ss_pred             -CCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 -KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 -~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                       .++|++++++|.   ..+++....-..|+||++|+ +++||+++..                                 
T Consensus       143 ~~~~I~r~~~dG~---~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~---------------------------------  186 (318)
T 3sov_A          143 EVPKIERAGMDGS---SRFIIINSEIYWPNGLTLDYEEQKLYWADAK---------------------------------  186 (318)
T ss_dssp             SSCEEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCEEEEEEcCCC---CeEEEEECCCCCccEEEEeccCCEEEEEECC---------------------------------
Confidence             689999999863   23344432234699999997 6789999977                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                         ...|.++|.+|...+.+..  +. +..+.+++.+++.||++++.+++|.+++..
T Consensus       187 ---~~~I~~~d~dG~~~~~~~~--~~-~~~P~glav~~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          187 ---LNFIHKSNLDGTNRQAVVK--GS-LPHPFALTLFEDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             ---TTEEEEEETTSCSCEEEEC--SC-CSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ---CCEEEEEcCCCCceEEEec--CC-CCCceEEEEeCCEEEEEecCCCeEEEEECC
Confidence               5689999999876666653  22 456777777899999999999999999984

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.73  E-value=2.2e-16  Score=133.80  Aligned_cols=151  Identities=21%  Similarity=0.296  Sum_probs=117.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +|+++++++|++|++++...           .....+.||+++ + ++++.+......||+|+++|||+.||++++..++
T Consensus       136 ~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          136 SNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             EEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             CCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            57899999999999976411           123468999999 4 7877776677789999999999999999999999


Q ss_pred             EEEEEec--CC-CCCceeEEecc--CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           82 CRRYWLK--GP-RQGRLESFIEH--LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        82 I~~~~~~--~~-~~~~~~~~~~~--~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      |++|+++  ++ .....+++...  ..+.|+++++|++|+||++...                                 
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~---------------------------------  249 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG---------------------------------  249 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET---------------------------------
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC---------------------------------
Confidence            9999986  33 33334455431  3457999999999999999876                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe---CCEEEEeeCCCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF---EDNLYMASIQSK  205 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~---~~~Lyv~~~~~~  205 (225)
                         .+.|.+++++|+.+..+..|..    .++.++..   ++.|||++...+
T Consensus       250 ---~~~v~~~d~~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          250 ---EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ---TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ---CCEEEEECCCCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence               4589999999999888887643    35666653   378999987763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.73  E-value=2.2e-16  Score=137.36  Aligned_cols=156  Identities=13%  Similarity=0.103  Sum_probs=121.4

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|+++++++ .|+||++|..                 .++|++++.+....+.+. .++..|+||+++|+++.||+++..
T Consensus       160 ~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred             CccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence            488999996 6789999987                 568899888644434443 567899999999988899999999


Q ss_pred             C-CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 K-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . ++|+|+++++.   ..+++.......|+||++|+ +++||+++..                                 
T Consensus       223 ~~~~I~r~~~dG~---~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~---------------------------------  266 (386)
T 3v65_B          223 NTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK---------------------------------  266 (386)
T ss_dssp             SSCEEEEEETTSC---SCEEEECSSCSCEEEEEEEGGGTEEEEEETT---------------------------------
T ss_pred             CCCEEEEEeCCCC---CcEEEEECCCCCeeeEEEeCCCCEEEEEECC---------------------------------
Confidence            8 99999999863   33344432234699999995 6789999977                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEe-CCCc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLP-LNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~-~~~~  215 (225)
                         ...|.+++.+|.....+... +  +..+.+++..++.||++++.+++|.+++ ..+.
T Consensus       267 ---~~~I~~~d~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          267 ---HHVIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             ---TTEEEEECTTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ---CCEEEEEeCCCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence               56899999998765555432 2  3457777778999999999999999998 4443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.73  E-value=2.2e-16  Score=138.05  Aligned_cols=157  Identities=16%  Similarity=0.153  Sum_probs=122.7

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++|+++. .++||++|..                 .++|.+++.+.+..+.+. ..+..|+||+++|.++.||+++.+
T Consensus       160 ~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~  222 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  222 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred             CcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence            378999997 6789999987                 578999998755555554 578889999999988889999987


Q ss_pred             C-CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 K-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . ++|++++++|.   ..+++....-..|.||++|+ +++||+++..                                 
T Consensus       223 ~~~~I~~~~~dG~---~~~~~~~~~l~~P~glavd~~~~~lY~aD~~---------------------------------  266 (400)
T 3p5b_L          223 TPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---------------------------------  266 (400)
T ss_dssp             SSCCEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCEEEEEeCCCC---ccEEEEECCCCceEEEEEEeCCCEEEEEECC---------------------------------
Confidence            4 89999999873   33344432234799999995 5789999977                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEe-CCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLP-LNT  214 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~-~~~  214 (225)
                         ...|.++|.+|.....+....+. +..+.+++..+++||++++.+++|.+++ ..+
T Consensus       267 ---~~~I~~~d~dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          267 ---LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             ---TTEEEEEETTSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred             ---CCEEEEEeCCCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence               55899999998766555432222 5567777778999999999999999998 444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=5.9e-16  Score=135.59  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=116.4

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE----ecCcc--ccc-eeEEecCCCEE
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL----HEGFY--FAN-GVALSKDENFV   72 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~----~~~~~--~pn-Gi~~~~dg~~L   72 (225)
                      .|+++++++ +|+||+++.                  .++|+++|.+++..+.+    ..+..  .|. +|+++|+++.|
T Consensus       220 ~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             CCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            478999999 789999754                  46899999987766555    22222  244 99999976789


Q ss_pred             EEEeCCCCEEEEEEecCCCCCceeEEeccC--------------CCCCCceEECCCCCEEEEee-cCCchhhhhhhcChh
Q 047259           73 VVCESWKFRCRRYWLKGPRQGRLESFIEHL--------------PGGPDNINLAPDGSFWVALI-KMNQTGVRAIQSCPD  137 (225)
Q Consensus        73 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~--------------~g~Pd~i~~d~~G~l~v~~~-~~~~~~~~~~~~~~~  137 (225)
                      ||+++..++|++++.++.    ...++...              -..|.+|++|++|+||+++. .              
T Consensus       282 yv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~--------------  343 (409)
T 3hrp_A          282 YMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK--------------  343 (409)
T ss_dssp             EEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT--------------
T ss_pred             EEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC--------------
Confidence            999999999999998752    33333211              13599999999999999998 6              


Q ss_pred             HHHHHHhhhhhhhhhccCCCCcceEEEEEC-CCCcEEEEEECCC------C----CcccceeEEEEe-CCEEEEeeCCCC
Q 047259          138 KWKLLQAYPELINLLIPLGNDAGARIVKVD-THGKIIMDFNDPN------A----TYISFVTSAVEF-EDNLYMASIQSK  205 (225)
Q Consensus       138 ~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d-~~G~~~~~~~~p~------g----~~~~~~t~~~~~-~~~Lyv~~~~~~  205 (225)
                                            ..+|.+++ ++|++......+.      |    ..+..+..++.+ ++.|||++..++
T Consensus       344 ----------------------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~  401 (409)
T 3hrp_A          344 ----------------------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK  401 (409)
T ss_dssp             ----------------------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred             ----------------------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence                                  56899999 7888765544311      1    125668888765 599999999999


Q ss_pred             eEEEEeC
Q 047259          206 FVGKLPL  212 (225)
Q Consensus       206 ~i~~~~~  212 (225)
                      +|.++.+
T Consensus       402 ~Ir~i~~  408 (409)
T 3hrp_A          402 AIRKYAV  408 (409)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9999876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.72  E-value=6.3e-16  Score=126.86  Aligned_cols=154  Identities=10%  Similarity=0.083  Sum_probs=117.6

Q ss_pred             CCCcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++++ |+||++|..                 .++|++++.+....+.+. .++..|+||+++|+++.|||++..
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~  142 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN  142 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC
T ss_pred             CccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC
Confidence            3789999985 689999986                 568999998643334443 456899999999987889999987


Q ss_pred             --CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           79 --KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        79 --~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                        .++|+++++++.   ..+++.......|.+|++|++ ++||+++..                                
T Consensus       143 ~~~~~I~~~~~dg~---~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~--------------------------------  187 (267)
T 1npe_A          143 RDNPKIETSHMDGT---NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--------------------------------  187 (267)
T ss_dssp             SSSCEEEEEETTSC---CCEEEECTTCSCEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred             CCCcEEEEEecCCC---CcEEEEECCCCCCcEEEEcCCCCEEEEEECC--------------------------------
Confidence              689999998763   233343222346999999996 579999987                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                          ...|.+++++|.....+.. .   ...+..++.++++||++++.+++|.+++..+
T Consensus       188 ----~~~I~~~~~~g~~~~~~~~-~---~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          188 ----THRAECLNPAQPGRRKVLE-G---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             ----TTEEEEEETTEEEEEEEEE-C---CCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             ----CCEEEEEecCCCceEEEec-C---CCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence                5689999999865444432 1   2345667777999999999999999999874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.71  E-value=8.1e-16  Score=126.23  Aligned_cols=158  Identities=13%  Similarity=0.065  Sum_probs=121.5

Q ss_pred             CCcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |++++++++ ++||++|..                 .++|++++.+++..+.+. .++..|+||+++++++.|||++...
T Consensus        38 ~~gi~~d~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~  100 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDIS-----------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQL  100 (267)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEecCCCEEEEEECC-----------------CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCC
Confidence            678999984 689999986                 579999998755555444 4568999999999888899999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++|.++++++.   ..+.+.......|.++++|+ +|+||+++....                                 
T Consensus       101 ~~I~~~~~~g~---~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~---------------------------------  144 (267)
T 1npe_A          101 DRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD---------------------------------  144 (267)
T ss_dssp             TEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSS---------------------------------
T ss_pred             CEEEEEEcCCC---CEEEEEECCCCCccEEEEeeCCCEEEEEECCCC---------------------------------
Confidence            99999999763   22334322224699999999 588999986511                                 


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                       .+.|.+++.+|+....+... +  +..+..++.+  +++||+++...++|.++++++..
T Consensus       145 -~~~I~~~~~dg~~~~~~~~~-~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          145 -NPKIETSHMDGTNRRILAQD-N--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             -SCEEEEEETTSCCCEEEECT-T--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             -CcEEEEEecCCCCcEEEEEC-C--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence             46889999999776666532 1  3457777654  68999999999999999998643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=1.3e-15  Score=128.90  Aligned_cols=174  Identities=17%  Similarity=0.208  Sum_probs=124.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCC-Ccch------hhhhcccCCCCcEEEEEeCCCCeEEEEec--CccccceeEEecCCCEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKY-TPAE------YYKDLVEGKPHGQLLKYDPELEETTVLHE--GFYFANGVALSKDENFV   72 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~-~~~~------~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGi~~~~dg~~L   72 (225)
                      |.+|+++++|+||+++..... ....      +......-...+.|+.+|.+++++.....  .+..|+||+++++|+ |
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l  104 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-Y  104 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-E
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-E
Confidence            568999999999999886310 0000      00000011235789999998787765443  356899999999998 9


Q ss_pred             EEEeCCCCEEEEEEecCCCCCceeEEec--------cCCCCCCceEECC-CCCEEEEee-cCCchhhhhhhcChhHHHHH
Q 047259           73 VVCESWKFRCRRYWLKGPRQGRLESFIE--------HLPGGPDNINLAP-DGSFWVALI-KMNQTGVRAIQSCPDKWKLL  142 (225)
Q Consensus        73 yv~~~~~~~I~~~~~~~~~~~~~~~~~~--------~~~g~Pd~i~~d~-~G~l~v~~~-~~~~~~~~~~~~~~~~r~~~  142 (225)
                      ||++...++|++|++++. ......+..        .....|.++++|+ +|+|||++. .                   
T Consensus       105 ~v~d~~~~~v~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-------------------  164 (329)
T 3fvz_A          105 WVTDVALHQVFKLDPHSK-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-------------------  164 (329)
T ss_dssp             EEEETTTTEEEEECTTCS-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-------------------
T ss_pred             EEEECCCCEEEEEeCCCC-eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-------------------
Confidence            999999999999998753 112222321        1112599999999 899999996 5                   


Q ss_pred             HhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCC-C-----CcccceeEEEEe-C-CEEEEeeCCCCeEEEEeCC
Q 047259          143 QAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN-A-----TYISFVTSAVEF-E-DNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       143 ~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~-g-----~~~~~~t~~~~~-~-~~Lyv~~~~~~~i~~~~~~  213 (225)
                                       ..+|.+++++|+.+..+.... +     ..+..+..++.+ + ++|||++..+++|.+++++
T Consensus       165 -----------------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          165 -----------------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             -----------------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -----------------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence                             568999999999988775321 1     125567777764 4 8999999999999999997

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.71  E-value=6.4e-16  Score=145.49  Aligned_cols=155  Identities=15%  Similarity=0.130  Sum_probs=123.0

Q ss_pred             CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++|+++..+ +||+||..                 .++|++++.+.+..+.++ ..+..|+||+++|.++.|||++++
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g  534 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  534 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             CcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence            48999999865 89999987                 579999998755555554 578889999999998889999988


Q ss_pred             C-CEEEEEEecCCCCCceeEEeccCCCCCCceEEC-CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 K-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA-PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d-~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . ++|++++++|.   ..++++......|.||++| ..|+||+++..                                 
T Consensus       535 ~~~~I~~~~~dG~---~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~---------------------------------  578 (791)
T 3m0c_C          535 TPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---------------------------------  578 (791)
T ss_dssp             SSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCeEEEEecCCC---ceEEEEeCCCCCceEEEEecCCCeEEEEeCC---------------------------------
Confidence            7 89999999873   3444543333479999999 46889999977                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~  212 (225)
                         ...|.+++.+|.....+....+. +..+.+++..+++||++++..++|.+++.
T Consensus       579 ---~~~I~~~d~dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          579 ---LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             ---TTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ---CCcEEEEecCCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence               45899999999766565432233 55677777789999999999999999974

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=8.5e-16  Score=137.26  Aligned_cols=164  Identities=12%  Similarity=0.087  Sum_probs=124.0

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-------CCeE------------EEE--ecCcc
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-------LEET------------TVL--HEGFY   58 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-------~~~~------------~~~--~~~~~   58 (225)
                      .|+++++++ +|.||+++..                 .++|+++|++       ++.+            +.+  .....
T Consensus       248 ~p~giavdp~~g~LYvtd~~-----------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~  310 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYE-----------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS  310 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETT-----------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred             CceEEEEcCCCCeEEEEECC-----------------CCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence            489999999 6799999987                 6799999986       5554            122  23456


Q ss_pred             ccceeEEecCCCEEEEEeCCCCEEEEEEecCC--CCCceeEEecc--CC------------CCCC-ceEEC-------CC
Q 047259           59 FANGVALSKDENFVVVCESWKFRCRRYWLKGP--RQGRLESFIEH--LP------------GGPD-NINLA-------PD  114 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~--~~~~~~~~~~~--~~------------g~Pd-~i~~d-------~~  114 (225)
                      +|.+|+++|+|+.|||+++.+++|++++.++.  .+....+++..  ..            ..|. +++++       ++
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~  390 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEE  390 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCC
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCC
Confidence            79999999999999999999999999988752  12223455531  11            1477 88887       78


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC--------------C
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP--------------N  180 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p--------------~  180 (225)
                      |+|||++..                                    ..+|.+++++|.+.......              +
T Consensus       391 g~lyVaD~~------------------------------------N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          391 YDFYFVDRL------------------------------------NFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             EEEEEEEGG------------------------------------GTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCC
T ss_pred             CeEEEEECC------------------------------------CCEEEEEeCCCCEEEEecccccccccCccccccCC
Confidence            999999988                                    66899999999776544321              1


Q ss_pred             C-----CcccceeEEEEe-C-CEEEEeeCCCCeEEEEeCCCccc
Q 047259          181 A-----TYISFVTSAVEF-E-DNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       181 g-----~~~~~~t~~~~~-~-~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      |     ..+..|++++.+ + +.|||++..+++|.++.+.++..
T Consensus       435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence            2     126678888865 3 89999999999999999887654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.70  E-value=9.5e-16  Score=131.57  Aligned_cols=159  Identities=12%  Similarity=0.114  Sum_probs=123.8

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |.+|++++ +++||++|..                 .++|++++.+++..+.+ ..++..|+||++++.++.||+++...
T Consensus        75 ~~~l~~d~~~~~ly~~D~~-----------------~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~  137 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVT-----------------LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT  137 (349)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEeccccEEEEEecc-----------------CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCC
Confidence            56788885 6789999986                 57999999875555544 45678999999999878899999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++|.++++++.   ..+++.......|.+|++|+ +|.||+++.+.                                  
T Consensus       138 ~~I~~~~~dG~---~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~----------------------------------  180 (349)
T 3v64_C          138 SRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN----------------------------------  180 (349)
T ss_dssp             TEEEEEETTSC---SCEEEECTTCSCEEEEEEETTTTEEEEEECSS----------------------------------
T ss_pred             CeEEEEcCCCC---ceEEEEeCCCCCcceEEEecCcCeEEEeccCC----------------------------------
Confidence            99999999863   23344432234699999997 67899999871                                  


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                       .+.|.+++.+|+....+.. .+  +..+.+++.+  +++||+++...++|.++++++...+
T Consensus       181 -~~~I~r~~~dG~~~~~~~~-~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~  238 (349)
T 3v64_C          181 -TPRIEASSMDGSGRRIIAD-TH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK  238 (349)
T ss_dssp             -SCEEEEEETTSCSCEESCC-SS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             -CCEEEEEeCCCCCcEEEEE-CC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE
Confidence             2689999999987655543 12  4467777764  7999999999999999999986543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.70  E-value=1.1e-15  Score=132.94  Aligned_cols=159  Identities=12%  Similarity=0.113  Sum_probs=124.6

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |.+|++++ +++||++|..                 .++|++++.+.+..+.+ ..++..|+||++++.++.||+++...
T Consensus       118 ~~gl~~d~~~~~ly~~D~~-----------------~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~  180 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVT-----------------LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT  180 (386)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT
T ss_pred             cEEEEEecCCCeEEEEeCC-----------------CCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC
Confidence            56788885 6789999986                 57999999876555554 45678999999999888899999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++|.++++++.   ..+++.......|.+|++|+ +|.||+++.+.                                  
T Consensus       181 ~~I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~g~ly~td~~~----------------------------------  223 (386)
T 3v65_B          181 SRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN----------------------------------  223 (386)
T ss_dssp             TEEEECBTTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEECSS----------------------------------
T ss_pred             CeEEEEeCCCC---ceEEeecCCCCCCcEEEEEcCCCeEEEeccCC----------------------------------
Confidence            99999998863   23334432234699999996 57899999771                                  


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                       .+.|.+++++|+....+... +  +..+.+++.+  +++||+++...++|.++++++...+
T Consensus       224 -~~~I~r~~~dG~~~~~~~~~-~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~  281 (386)
T 3v65_B          224 -TPRIEASSMDGSGRRIIADT-H--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK  281 (386)
T ss_dssp             -SCEEEEEETTSCSCEEEECS-S--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred             -CCEEEEEeCCCCCcEEEEEC-C--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE
Confidence             36899999999876666542 2  4457777764  7999999999999999999876543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.69  E-value=2.7e-15  Score=126.94  Aligned_cols=159  Identities=13%  Similarity=0.098  Sum_probs=121.3

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC----CeEEEEe-cCccccceeEEecCCCEEEEE
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL----EETTVLH-EGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~----~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      |.++++++ +++||++|..                 .++|++++.++    ...+.+. .++..|.||++++.++.||++
T Consensus        32 p~g~~~d~~~~~ly~~D~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~   94 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT   94 (316)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEE
T ss_pred             eEEEEEEeCCCEEEEEECC-----------------CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEE
Confidence            67889997 4689999986                 57999999864    2333333 467899999999877789999


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      +...++|.++++++.   ..+++.......|.+|++|+ +|+||+++.+.                              
T Consensus        95 d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------------------------------  141 (316)
T 1ijq_A           95 DSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------------------------------  141 (316)
T ss_dssp             ETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSS------------------------------
T ss_pred             ECCCCEEEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccCC------------------------------
Confidence            999999999998763   33444432334799999997 67899998761                              


Q ss_pred             CCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          155 LGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                           .+.|.+++++|+....+...  . +..+.+++.+  +++||+++...++|.++++++...+
T Consensus       142 -----~~~I~~~~~dG~~~~~~~~~--~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~  199 (316)
T 1ijq_A          142 -----PAKIKKGGLNGVDIYSLVTE--N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  199 (316)
T ss_dssp             -----SCEEEEEETTSCCEEEEECS--S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             -----CCeEEEEcCCCCCeEEEEEC--C-CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE
Confidence                 36899999999877666532  1 4567777765  7999999999999999999875443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=3.2e-15  Score=123.04  Aligned_cols=154  Identities=10%  Similarity=0.149  Sum_probs=115.9

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++++|++|+++..                 .++|+++|.+...+..+.  ..+..|++|+++++|+ |||+++.
T Consensus       122 ~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~  183 (286)
T 1q7f_A          122 HPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR  183 (286)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG
T ss_pred             CceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC
Confidence            3789999999999999876                 578999998633333333  3467899999999986 9999999


Q ss_pred             CCEEEEEEecCCCCCceeEEecc-CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEH-LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .++|++|+.++.   ....+... ....|.+|++|++|++|+++..                                  
T Consensus       184 ~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----------------------------------  226 (286)
T 1q7f_A          184 AHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNH----------------------------------  226 (286)
T ss_dssp             GTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECS----------------------------------
T ss_pred             CCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCC----------------------------------
Confidence            999999998652   22233211 1246999999999999999976                                  


Q ss_pred             Ccc-eEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCC
Q 047259          158 DAG-ARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       158 ~~~-~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                        . +.|.+++++|+.+..+.....  ...+..++. .+|+||+++. +++|.+++...
T Consensus       227 --~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~~~  280 (286)
T 1q7f_A          227 --NNFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYVQ  280 (286)
T ss_dssp             --SSCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECSC
T ss_pred             --CCEEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEccc
Confidence              3 389999999998888765322  223445554 4789999974 78999998754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=7.5e-16  Score=130.34  Aligned_cols=189  Identities=17%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--eEEEEe---------cCccccceeEEec-C
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--ETTVLH---------EGFYFANGVALSK-D   68 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~---------~~~~~pnGi~~~~-d   68 (225)
                      .|++|+++++|+||+++..                 .++|++++.+..  .+..+.         ..+..|+||+++| +
T Consensus        92 ~p~gia~d~~g~l~v~d~~-----------------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~  154 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVA-----------------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST  154 (329)
T ss_dssp             SEEEEEECTTSCEEEEETT-----------------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT
T ss_pred             CceEEEECCCCCEEEEECC-----------------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC
Confidence            4789999999999999987                 578999998633  233332         3355899999999 5


Q ss_pred             CCEEEEEeC-CCCEEEEEEecCCCCCceeEEeccC------C---CCCCceEECCC-CCEEEEeecCC-chhhhhhhcCh
Q 047259           69 ENFVVVCES-WKFRCRRYWLKGPRQGRLESFIEHL------P---GGPDNINLAPD-GSFWVALIKMN-QTGVRAIQSCP  136 (225)
Q Consensus        69 g~~Lyv~~~-~~~~I~~~~~~~~~~~~~~~~~~~~------~---g~Pd~i~~d~~-G~l~v~~~~~~-~~~~~~~~~~~  136 (225)
                      |+ |||+++ .+++|++|+.++.   ....+....      +   ..|.+|++|++ |+|||++.... ...++.-  ..
T Consensus       155 g~-lyv~d~~~~~~I~~~~~~g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G  228 (329)
T 3fvz_A          155 GA-VFVSDGYCNSRIVQFSPSGK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TK  228 (329)
T ss_dssp             CC-EEEEECSSCCEEEEECTTSC---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TC
T ss_pred             Ce-EEEEeCCCCCeEEEEcCCCC---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CC
Confidence            54 999997 7999999997653   122222110      1   24999999998 89999997743 1111110  00


Q ss_pred             hHHHHH-----Hh-------hhhhhh------hhccCCCCcceEEEEEC-CCCcEEEEEECCCCCcccceeEEEEe-CCE
Q 047259          137 DKWKLL-----QA-------YPELIN------LLIPLGNDAGARIVKVD-THGKIIMDFNDPNATYISFVTSAVEF-EDN  196 (225)
Q Consensus       137 ~~r~~~-----~~-------~p~~~~------~~~~~~~~~~~~V~~~d-~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~  196 (225)
                      .+.+.+     ..       .| .+.      .+.+...  ...|.+++ .+|+++..+....+. +..+..++.+ +|.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~--~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQE--PVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGT  304 (329)
T ss_dssp             CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSC--CCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSE
T ss_pred             cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCC--CcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCC
Confidence            000000     00       01 110      0011122  34677777 458888777532232 5567777764 689


Q ss_pred             EEEeeCCCCeEEEEeCCCcc
Q 047259          197 LYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       197 Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      |||++..+++|.+++++++.
T Consensus       305 lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEESSSCCEEEEEEEECS
T ss_pred             EEEEECCCCEEEEEeCCccc
Confidence            99999999999999987643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=5e-16  Score=132.35  Aligned_cols=154  Identities=15%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-----------------------
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-----------------------   56 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------------------   56 (225)
                      +||++++++ +|.+|+||.+..              ..+.|+.+|..+++.....++                       
T Consensus       121 ~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~  186 (343)
T 2qe8_A          121 FVNDLAVDLIHNFVYISDPAPD--------------DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQP  186 (343)
T ss_dssp             CCCEEEEETTTTEEEEEECCSG--------------GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECT
T ss_pred             ccceEEEecCCCEEEEEcCccC--------------CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccC
Confidence            579999997 478999998410              145667777655554443221                       


Q ss_pred             -------ccccceeEEecCCCEEEEEeCCCCEEEEEEec---CCCCCceeEEec----cCCCCCCceEECCCCCEEEEee
Q 047259           57 -------FYFANGVALSKDENFVVVCESWKFRCRRYWLK---GPRQGRLESFIE----HLPGGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        57 -------~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~---~~~~~~~~~~~~----~~~g~Pd~i~~d~~G~l~v~~~  122 (225)
                             ...||||+++|||+.||+++...++|++++.+   ...++..+++..    ...+.|+||++|++|+||+++.
T Consensus       187 ~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~  266 (343)
T 2qe8_A          187 DGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL  266 (343)
T ss_dssp             TSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG
T ss_pred             CCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc
Confidence                   12489999999999999999999999999864   111122111110    1234799999999999999998


Q ss_pred             cCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEE-eCCEEEEe
Q 047259          123 KMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVE-FEDNLYMA  200 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~  200 (225)
                      .                                    .++|.++|+ +|++......|.   +..++.++. .+++|||+
T Consensus       267 ~------------------------------------~~~V~~~d~~~G~~~~~~~~~~---~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          267 A------------------------------------HSAIGVITSADRAYKLLVTDEK---LSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             G------------------------------------GTEEEEEETTTTEEEEEEECGG---GSCEEEEEECTTSCEEEE
T ss_pred             C------------------------------------CCeEEEEECCCCCEEEEEECCc---eecCCeeEECCCCcEEEE
Confidence            7                                    678999999 898766666542   446777776 47899999


Q ss_pred             eCCCCeE
Q 047259          201 SIQSKFV  207 (225)
Q Consensus       201 ~~~~~~i  207 (225)
                      +...+++
T Consensus       308 ~~~~~~~  314 (343)
T 2qe8_A          308 CNQLHHS  314 (343)
T ss_dssp             ECCGGGS
T ss_pred             eCccccc
Confidence            8765544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=1.4e-15  Score=123.80  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=116.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .|++++++++|+||+++..                 .+.|++++..+...... ...+..|++|+++++|+ |||++...
T Consensus       109 ~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~  170 (270)
T 1rwi_B          109 YPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDN  170 (270)
T ss_dssp             SEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGG
T ss_pred             CCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCC
Confidence            3678999999999999875                 57899998654433322 24456899999999997 99999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      ++|++|+.++.   ............|.+|++|++|++|+++..                                    
T Consensus       171 ~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~------------------------------------  211 (270)
T 1rwi_B          171 NRVVKLEAESN---NQVVLPFTDITAPWGIAVDEAGTVYVTEHN------------------------------------  211 (270)
T ss_dssp             TEEEEECTTTC---CEEECCCSSCCSEEEEEECTTCCEEEEETT------------------------------------
T ss_pred             CEEEEEecCCC---ceEeecccCCCCceEEEECCCCCEEEEECC------------------------------------
Confidence            99999998753   111111111146899999999999999976                                    


Q ss_pred             ceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      .+.|.+++++|+....+.. .+  +..+..++.. +|+||+++..+++|.+++++.+.
T Consensus       212 ~~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          212 TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             TSCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            5578999999876544332 12  3456777664 68899999999999999988764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.66  E-value=5.9e-15  Score=125.23  Aligned_cols=158  Identities=18%  Similarity=0.161  Sum_probs=122.2

Q ss_pred             CcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe--EEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE--TTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      -+|++++ +|+||++|..                 .++|++++.+++.  ...+..++..|+||++++.++.||+++...
T Consensus        38 ~~ld~d~~~~~lyw~D~~-----------------~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~  100 (318)
T 3sov_A           38 AAVDFVFSHGLIYWSDVS-----------------EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET  100 (318)
T ss_dssp             EEEEEEGGGTEEEEEETT-----------------TTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCCCEEEEEECC-----------------CCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCC
Confidence            3566676 5789999987                 5789999987442  234556788999999998777899999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++|.++++++.   ..+++.......|.+|++|+ .|.||+++.+.                                  
T Consensus       101 ~~I~~~~~dG~---~~~~l~~~~~~~P~giavdp~~g~ly~td~~~----------------------------------  143 (318)
T 3sov_A          101 NRIEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWGE----------------------------------  143 (318)
T ss_dssp             TEEEEEETTSC---SCEEEECSSCSSEEEEEEEGGGTEEEEEECSS----------------------------------
T ss_pred             CEEEEEECCCC---cEEEEEeCCCCCccEEEEeCCCCEEEEEecCC----------------------------------
Confidence            99999999863   23344432334699999997 58899999762                                  


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                       .+.|.+++++|+....+... +  +..+.+++.+  +++||+++...++|.++++++...+
T Consensus       144 -~~~I~r~~~dG~~~~~~~~~-~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~  201 (318)
T 3sov_A          144 -VPKIERAGMDGSSRFIIINS-E--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ  201 (318)
T ss_dssp             -SCEEEEEETTSCSCEEEECS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             -CCEEEEEEcCCCCeEEEEEC-C--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Confidence             46899999999876666532 2  4567777765  7999999999999999999976544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=1e-14  Score=122.43  Aligned_cols=167  Identities=22%  Similarity=0.254  Sum_probs=122.4

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      |++++++++|++|+++....           .....+.|++++.++++++.+......|++|+++|||+.||++++..++
T Consensus       137 ~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~  205 (333)
T 2dg1_A          137 IDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR  205 (333)
T ss_dssp             EEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             ccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe
Confidence            68899999999999987511           1123678999998766777766667789999999999999999998899


Q ss_pred             EEEEEecC--CCCCc--eeEEeccCC--CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           82 CRRYWLKG--PRQGR--LESFIEHLP--GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        82 I~~~~~~~--~~~~~--~~~~~~~~~--g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      |++|+++.  .....  ...+.. ..  ..|+++++|++|++|++...                                
T Consensus       206 i~~~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~l~v~~~~--------------------------------  252 (333)
T 2dg1_A          206 LHRIALEDDGVTIQPFGATIPYY-FTGHEGPDSCCIDSDDNLYVAMYG--------------------------------  252 (333)
T ss_dssp             EEEEEECTTSSSEEEEEEEEEEE-CCSSSEEEEEEEBTTCCEEEEEET--------------------------------
T ss_pred             EEEEEecCCCcCcccccceEEEe-cCCCCCCCceEECCCCCEEEEEcC--------------------------------
Confidence            99999853  11111  012221 22  36999999999999999876                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCC--cccceeEEEEe--CCEEEEeeCCC-----CeEEEEeCCCcc
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNAT--YISFVTSAVEF--EDNLYMASIQS-----KFVGKLPLNTPE  216 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~--~~~~~t~~~~~--~~~Lyv~~~~~-----~~i~~~~~~~~~  216 (225)
                          .+.|.++|++|+.+..+..+...  .+..++.++..  +++||+++...     ..|.+++.....
T Consensus       253 ----~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~~g  318 (333)
T 2dg1_A          253 ----QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAKG  318 (333)
T ss_dssp             ----TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSCB
T ss_pred             ----CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecccCc
Confidence                46899999999988888765320  01234555542  46999998763     488888876544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.65  E-value=6.8e-15  Score=128.53  Aligned_cols=159  Identities=13%  Similarity=0.101  Sum_probs=121.7

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC----CeEEEE-ecCccccceeEEecCCCEEEEE
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL----EETTVL-HEGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~----~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      |.+|++++ +++||++|..                 .++|++++.+.    ...+.+ ..++..|.||++++.++.||++
T Consensus       114 ~~~l~~d~~~~~lywsD~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~  176 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT  176 (400)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeeccCceEEEecC-----------------CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEE
Confidence            56788886 6789999987                 56899998763    123333 4578899999999977789999


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      +...++|.++++++.   ..++++......|.+|++|+ .|.||+++++.                              
T Consensus       177 d~~~~~I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~------------------------------  223 (400)
T 3p5b_L          177 DSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------------------------------  223 (400)
T ss_dssp             ETTTTEEEEECTTTC---SEEEEEECSSCCEEEEEEETTTTEEEEEECSS------------------------------
T ss_pred             ECCCCeEEEEeCCCC---ceEEEEeCCCCCcceEEEecccCeEEEEeCCC------------------------------
Confidence            999999999999863   33444432334699999998 67899999762                              


Q ss_pred             CCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          155 LGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                           .+.|.+++.+|+....+... +  +..+.+++.+  +++||+++...++|.++++++...+
T Consensus       224 -----~~~I~~~~~dG~~~~~~~~~-~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~  281 (400)
T 3p5b_L          224 -----PAKIKKGGLNGVDIYSLVTE-N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  281 (400)
T ss_dssp             -----SCCEEEEETTSCSCEEEECS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE
T ss_pred             -----CCEEEEEeCCCCccEEEEEC-C--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE
Confidence                 35799999999876666542 2  4567777765  7999999999999999999886543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.65  E-value=1.1e-14  Score=137.17  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=123.3

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC----eEEEEe-cCccccceeEEecCCCEEEEE
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE----ETTVLH-EGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~----~~~~~~-~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      |.+|+++. +++||++|..                 .++|++++.+..    ..+.++ .++..|+|||++..++.|||+
T Consensus       426 ~~gl~~d~~~~~lY~sD~~-----------------~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~t  488 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT  488 (791)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEE
T ss_pred             eEEEeecccCCeeEEeecc-----------------ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEE
Confidence            45778887 6789999987                 568888887631    233444 478999999999998889999


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      ++..++|.++++++.   ..++++......|.+|++|+. |+||+++++.                              
T Consensus       489 D~~~~~I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~------------------------------  535 (791)
T 3m0c_C          489 DSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------------------------------  535 (791)
T ss_dssp             ETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSS------------------------------
T ss_pred             ecCCCeEEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCCC------------------------------
Confidence            999999999999863   344454323346999999985 8899999872                              


Q ss_pred             CCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCccccc
Q 047259          155 LGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAEL  219 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~~  219 (225)
                           ...|.+++.+|+...++... +  +..+.+++.+  +++||+++...++|.++++++...+.
T Consensus       536 -----~~~I~~~~~dG~~~~~lv~~-~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~  594 (791)
T 3m0c_C          536 -----PAKIKKGGLNGVDIYSLVTE-N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  594 (791)
T ss_dssp             -----SCEEEEEETTSCCEEEEECS-S--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             -----CCeEEEEecCCCceEEEEeC-C--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence                 36899999999877666542 2  4567887765  79999999999999999998876543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.64  E-value=2.5e-15  Score=139.97  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=119.3

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |++|+++. .|+||++|..                 .++|++++.+.+..+.++ .++..|+||+++|+++.||+++.+.
T Consensus       455 P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~  517 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT  517 (699)
T ss_dssp             CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred             cceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence            78999994 6789999886                 568999998755555554 4578999999999888899999876


Q ss_pred             -CEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           80 -FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        80 -~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                       ++|+++++++.   ..++++......|+||++|++ ++||+++..                                  
T Consensus       518 ~~~I~~~~~dG~---~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~----------------------------------  560 (699)
T 1n7d_A          518 PAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK----------------------------------  560 (699)
T ss_dssp             SCCEEBCCSSSC---CCCEESCSSCSSCCCEEECTTTCCEEEEETT----------------------------------
T ss_pred             CCeEEEEeCCCC---CeeEEEeCCCCCccEEEEeccCCEEEEEecC----------------------------------
Confidence             89999998863   233343222347999999975 789999977                                  


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                        ...|.+++.+|.....+....+. +..+.+++.++++||++++.+++|.+++..
T Consensus       561 --~~~I~~~d~dG~~~~~~~~~~~~-~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          561 --LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             --TTEEEEECSSSSCCEEECCCSSS-CSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             --CCeEEEEccCCCceEEEEecCCc-CCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence              56899999998765555432222 445666677788999999999999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.63  E-value=4.1e-14  Score=118.64  Aligned_cols=155  Identities=14%  Similarity=0.203  Sum_probs=114.4

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK-   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~-   79 (225)
                      +|++++++++|+||++|..                 .++|+++|++ ++..........|+||++++||+ |||++... 
T Consensus        33 ~pegia~~~~g~lyv~d~~-----------------~~~I~~~d~~-g~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~   93 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNAD   93 (306)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECTT
T ss_pred             CcceEEECCCCCEEEEeCC-----------------CCeEEEECCC-CceEEEEeCCCCceeEEEcCCCc-EEEEeccCC
Confidence            5789999999999999976                 5799999987 45555544456899999999998 99999764 


Q ss_pred             -CEEEEEEecCCCCCceeEEecc-CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           80 -FRCRRYWLKGPRQGRLESFIEH-LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        80 -~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                       .+|++++..+   +..+.+... ....|++++..+++++|+++..                                  
T Consensus        94 ~~~v~~~d~~~---g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~----------------------------------  136 (306)
T 2p4o_A           94 SIPVVSLVKSD---GTVETLLTLPDAIFLNGITPLSDTQYLTADSY----------------------------------  136 (306)
T ss_dssp             SCEEEEEECTT---SCEEEEEECTTCSCEEEEEESSSSEEEEEETT----------------------------------
T ss_pred             cceEEEEcCCC---CeEEEEEeCCCccccCcccccCCCcEEEEECC----------------------------------
Confidence             4699988654   344444432 1236889998888889998865                                  


Q ss_pred             CcceEEEEECCCCc-EEEEEE-------CCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          158 DAGARIVKVDTHGK-IIMDFN-------DPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       158 ~~~~~V~~~d~~G~-~~~~~~-------~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                        .+.|+++|+++. ......       .+.+. +..+..+.+++++||+++...++|.++++++
T Consensus       137 --~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngis~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          137 --RGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             --TTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             --CCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCcCcCCCEEEEEeCCCCEEEEEEeCC
Confidence              568999998742 211111       11222 4456667667889999999999999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.62  E-value=2.3e-14  Score=131.94  Aligned_cols=153  Identities=12%  Similarity=0.164  Sum_probs=121.1

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++|+++. .|+||+||..                 .++|.+++.+.+..+.+. ..+..|++|+++|.++.||+++.+
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~-----------------~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g  143 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTG-----------------TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG  143 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS
T ss_pred             CcceEEEEeCCCEEEEEECC-----------------CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC
Confidence            389999996 4689999997                 579999998744444444 778999999999977789999987


Q ss_pred             -CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 -KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 -~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                       .++|+|++++|.   ..+++.+. -..|.||++|++ ++||+++..                                 
T Consensus       144 ~~~~I~r~~~dG~---~~~~l~~~-~~~P~GlalD~~~~~LY~aD~~---------------------------------  186 (628)
T 4a0p_A          144 GKPKIDRAAMDGS---ERTTLVPN-VGRANGLTIDYAKRRLYWTDLD---------------------------------  186 (628)
T ss_dssp             SSCEEEEEETTSC---SCEEEECS-CSSEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCEEEEEeCCCC---ceEEEECC-CCCcceEEEccccCEEEEEECC---------------------------------
Confidence             789999999873   34455532 346999999985 789999977                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                         ...|.+++.+|...+.+...    +..+.+++..+++||++++.+++|.+++..+
T Consensus       187 ---~~~I~~~d~dG~~~~v~~~~----l~~P~glav~~~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          187 ---TNLIESSNMLGLNREVIADD----LPHPFGLTQYQDYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             ---TTEEEEEETTSCSCEEEEEC----CSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             ---CCEEEEEcCCCCceEEeecc----CCCceEEEEECCEEEEecCCCCEEEEEECCC
Confidence               56899999998655555431    3456677778899999999999999998643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.62  E-value=1.8e-14  Score=132.45  Aligned_cols=157  Identities=14%  Similarity=0.156  Sum_probs=121.9

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++. .++||+||+.                 .++|.+++.+....+.+. +++..|++|+++|..+.||+++.+
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~-----------------~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g  455 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTG-----------------TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG  455 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECS
T ss_pred             CcCceEEecccCcEEEEeCC-----------------CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCC
Confidence            489999996 6789999987                 568888887644444444 578999999999987789999987


Q ss_pred             C-CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 K-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . .+|.|++++|.   ..+++....-..|.||++|. +++||+++..                                 
T Consensus       456 ~~~~I~r~~~dG~---~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~---------------------------------  499 (619)
T 3s94_A          456 EIPKIERAALDGS---DRVVLVNTSLGWPNGLALDYDEGKIYWGDAK---------------------------------  499 (619)
T ss_dssp             SSCEEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCCEEEEEccCCC---ccEEEEeCCCCCCeeeEEcccCCEEEEEECC---------------------------------
Confidence            5 79999999873   33444433334799999997 6789999987                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                         .+.|.+++.+|....++... +  +..+.+++..+++||++++..++|.+++..+..
T Consensus       500 ---~~~I~~~~~dG~~~~~~~~~-~--l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          500 ---TDKIEVMNTDGTGRRVLVED-K--IPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             ---TTEEEEEESSSCCCEEEEEC-C--CCSSCCEEEETTEEEEECTTSSCEEEEESSSCC
T ss_pred             ---CCEEEEEecCCCceEEEecc-C--CCCcEEEEEECCEEEEeecCCCeEEEEEcCCCc
Confidence               56899999998766555321 1  334556667788999999999999999887653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=4.3e-14  Score=114.87  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .|.+|+++++|+||+++.                  .+.|+++|.+++...... .+...|++|+++++|+ |||++...
T Consensus        68 ~p~~i~~~~~g~l~v~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~  128 (270)
T 1rwi_B           68 QPQGLAVDGAGTVYVTDF------------------NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGN  128 (270)
T ss_dssp             SCCCEEECTTCCEEEEET------------------TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGGG
T ss_pred             CcceeEECCCCCEEEEcC------------------CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEECCC
Confidence            377899999999999976                  258899998755444332 4457899999999997 99999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      ++|++++..+.   ............|.+|++|++|++|+++..                                    
T Consensus       129 ~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~------------------------------------  169 (270)
T 1rwi_B          129 NRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGNVYVTDTD------------------------------------  169 (270)
T ss_dssp             TEEEEECTTCC---SCEECCCCSCCSCCCEEECTTCCEEEEEGG------------------------------------
T ss_pred             CEEEEEECCCc---eeEeeccccCCCceeEEEeCCCCEEEEECC------------------------------------
Confidence            99999964321   111111111236999999999999999876                                    


Q ss_pred             ceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                      .+.|.++++++........ .+  +..+..++.+ +|+||+++..+++|.+++.++....
T Consensus       170 ~~~i~~~~~~~~~~~~~~~-~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~  226 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPF-TD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST  226 (270)
T ss_dssp             GTEEEEECTTTCCEEECCC-SS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred             CCEEEEEecCCCceEeecc-cC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence            5689999998765433322 11  2456667664 6799999999999999998775433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.62  E-value=5.9e-14  Score=115.43  Aligned_cols=156  Identities=15%  Similarity=0.232  Sum_probs=116.3

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec------CccccceeEEe-cCCCEEE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE------GFYFANGVALS-KDENFVV   73 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~~~~pnGi~~~-~dg~~Ly   73 (225)
                      .|.+++++++|++|+++..                 .++|.++|.+...+..+..      .+..|.+|+++ +++ .||
T Consensus        31 ~p~~v~~~~~g~l~v~~~~-----------------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~   92 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTN-----------------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DII   92 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEE
T ss_pred             CCceEEECCCCCEEEEECC-----------------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEE
Confidence            3789999999999999875                 5789999987333333321      24679999995 565 599


Q ss_pred             EEeCC-CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           74 VCESW-KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        74 v~~~~-~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                      |++.. .++|.+|+.++.   ....+.......|.++++|++|++|+++..                             
T Consensus        93 v~~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------------------  140 (286)
T 1q7f_A           93 VTERSPTHQIQIYNQYGQ---FVRKFGATILQHPRGVTVDNKGRIIVVECK-----------------------------  140 (286)
T ss_dssp             EEECGGGCEEEEECTTSC---EEEEECTTTCSCEEEEEECTTSCEEEEETT-----------------------------
T ss_pred             EEcCCCCCEEEEECCCCc---EEEEecCccCCCceEEEEeCCCCEEEEECC-----------------------------
Confidence            99975 789999986542   222232112246899999999999999866                             


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCc
Q 047259          153 IPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                             .+.|.+++++|+.+..+..+..  +..+..++.+ +++||+++...++|.+++..+.
T Consensus       141 -------~~~i~~~~~~g~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~  195 (286)
T 1q7f_A          141 -------VMRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ  195 (286)
T ss_dssp             -------TTEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC
T ss_pred             -------CCEEEEEcCCCCEEEEeCCCCc--cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC
Confidence                   5689999999998887765322  3456667654 6899999999999999998664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.62  E-value=4.2e-14  Score=130.03  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=123.1

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe--EEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE--TTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |-+|++++ +|+||+||..                 .++|++++.+...  ...+..++..|+|||++..++.||+++..
T Consensus        42 ~~~ld~~~~~~~ly~sD~~-----------------~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~  104 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVS-----------------EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE  104 (619)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEEeCCCEEEEEECC-----------------CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCC
Confidence            45778887 6789999987                 5789999986332  23445677899999999988889999999


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .++|.+++++|.   ..+++.......|.+|++|+. |.||+++++.                                 
T Consensus       105 ~~~I~v~~~dG~---~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~---------------------------------  148 (619)
T 3s94_A          105 TNRIEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---------------------------------  148 (619)
T ss_dssp             TTEEEEEETTSC---SCEEEECSSCSCCCCEEEETTTTEEEEEECSS---------------------------------
T ss_pred             CCEEEEEECCCC---CEEEEEeCCCCCCceEEEecCCCeEEEeccCC---------------------------------
Confidence            999999999873   333444323346999999985 8899999772                                 


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCccccc
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAEL  219 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~~  219 (225)
                        .+.|.+.+.+|+....+....   +..+++++.+  +++||+++...++|.++++++...+.
T Consensus       149 --~~~I~r~~~dG~~~~~l~~~~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~  207 (619)
T 3s94_A          149 --VPKIERAGMDGSSRFIIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA  207 (619)
T ss_dssp             --SCEEEEEETTSCSCEEEECSS---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-
T ss_pred             --CCEEEEEECCCCceEEEEeCC---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE
Confidence              468999999998766665422   4568888765  79999999999999999999866543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=6.8e-14  Score=114.77  Aligned_cols=153  Identities=16%  Similarity=0.269  Sum_probs=117.2

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |++++++++|++|+++..                 .+.|++++++ +++....  .....|++|+++++|+ ||+++...
T Consensus       106 ~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~  166 (300)
T 2qc5_A          106 PYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQN  166 (300)
T ss_dssp             EEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTT
T ss_pred             CccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCC
Confidence            678999999999999875                 5689999987 7665442  2467899999999998 99999988


Q ss_pred             CEEEEEEecCCCCCceeEEec-cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++|++++.++    ....+.. .....|.++++|++|+||++...                                   
T Consensus       167 ~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-----------------------------------  207 (300)
T 2qc5_A          167 NSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIM-----------------------------------  207 (300)
T ss_dssp             TEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETT-----------------------------------
T ss_pred             CeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEccC-----------------------------------
Confidence            9999998843    2322321 12236899999999999999876                                   


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                       .+.|.+++++|+... +..+.+  ...+..++.+ +|+||+++...+.|.+++..+..
T Consensus       208 -~~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~  262 (300)
T 2qc5_A          208 -GNKIGRITTTGEISE-YDIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITNDNTI  262 (300)
T ss_dssp             -TTEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE
T ss_pred             -CCEEEEEcCCCcEEE-EECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECCCCcE
Confidence             568999999888754 444332  3456666654 68999999999999999986543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.61  E-value=3.1e-14  Score=125.64  Aligned_cols=155  Identities=12%  Similarity=0.062  Sum_probs=116.2

Q ss_pred             CCCcEEEcCC---CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 047259            1 FTNDVIEASD---GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         1 ~pndv~~~~d---G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      .|++|+++++   |+||++|..                  ++|+++|+.+++++.+...+..|+||+++++|+ |||++.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~------------------~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~  200 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR------------------DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDD  200 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT------------------SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCC------------------CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcC
Confidence            4899999985   899999873                  489999997799998888888999999999999 999997


Q ss_pred             CC----CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           78 WK----FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        78 ~~----~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                      ..    ..++.+...+.... ...+.  ....|.++++|+ +|+|||++..                             
T Consensus       201 ~~~~~~~gv~~~~~~~~~~~-~~~~~--~~~~P~giavd~~~G~lyv~d~~-----------------------------  248 (433)
T 4hw6_A          201 QSSDTNTGIYLFTRASGFTE-RLSLC--NARGAKTCAVHPQNGKIYYTRYH-----------------------------  248 (433)
T ss_dssp             CSCTTSEEEEEECGGGTTCC-EEEEE--ECSSBCCCEECTTTCCEEECBTT-----------------------------
T ss_pred             CCCcccceEEEEECCCCeec-ccccc--ccCCCCEEEEeCCCCeEEEEECC-----------------------------
Confidence            53    34666765543211 12222  234699999999 8999999977                             


Q ss_pred             ccCCCCcceEEEEECCC-CcE-EEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          153 IPLGNDAGARIVKVDTH-GKI-IMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d~~-G~~-~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                             .++|.+++++ |++ ...+.....   .....++.+  +++|||++..+++|.+++++...
T Consensus       249 -------~~~V~~~d~~~g~~~~~~~~~~~~---~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~  306 (433)
T 4hw6_A          249 -------HAMISSYDPATGTLTEEEVMMDTK---GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET  306 (433)
T ss_dssp             -------CSEEEEECTTTCCEEEEEEECSCC---SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT
T ss_pred             -------CCEEEEEECCCCeEEEEEeccCCC---CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC
Confidence                   6789999998 877 333443221   223344443  45799999999999999987543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=6.1e-14  Score=123.63  Aligned_cols=156  Identities=7%  Similarity=0.053  Sum_probs=119.6

Q ss_pred             CCCcEEEcC--CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEAS--DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~--dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|.+|+++|  +|+||++|..                  ++|.++|.+++.++.+......|++|+++++|++|||++..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~------------------~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~  199 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ------------------HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQ  199 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT------------------EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECC
T ss_pred             CCCEEEECCCCCCeEEEEeCC------------------CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCC
Confidence            489999996  5899999873                  58999999877888888888899999999999999999985


Q ss_pred             CC----EEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           79 KF----RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        79 ~~----~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      .+    .++.++.++. ......+..  ...|.++++|+ +|+||+++..                              
T Consensus       200 ~~~~~~~v~~~~~~g~-~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~------------------------------  246 (430)
T 3tc9_A          200 NNNDRPNNYILTRESG-FKVITELTK--GQNCNGAETHPINGELYFNSWN------------------------------  246 (430)
T ss_dssp             SCTTSEEEEEEEGGGT-SCSEEEEEE--CSSCCCEEECTTTCCEEEEETT------------------------------
T ss_pred             CCcccceEEEEeCCCc-eeeeeeecc--CCCceEEEEeCCCCEEEEEECC------------------------------
Confidence            43    5677776653 221223321  23599999999 8999999987                              


Q ss_pred             cCCCCcceEEEEECCCCcEE-EEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          154 PLGNDAGARIVKVDTHGKII-MDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~G~~~-~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                            .++|.++++++... .....+.+   ..+..++.+  +++||+++..+++|.+++.++..
T Consensus       247 ------~~~V~~~~~~~~~~~~~~~~~~~---~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~  303 (430)
T 3tc9_A          247 ------AGQVFRYDFTTQETTPLFTIQDS---GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKT  303 (430)
T ss_dssp             ------TTEEEEEETTTTEEEEEEECSSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ------CCEEEEEECCCCcEEEEEEcCCC---CcceeEEEcCCCCEEEEEECCCCEEEEEeCCccc
Confidence                  56899999997655 44444332   346666653  45699999999999999988653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=6e-14  Score=115.08  Aligned_cols=149  Identities=14%  Similarity=0.191  Sum_probs=112.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++++|+||+++..                 .+.|++++. +++.....  .....|.+|+++++|+ |||++..
T Consensus       147 ~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~  207 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQ-----------------NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM  207 (300)
T ss_dssp             CEEEEEECTTSSEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETT
T ss_pred             CceeEEECCCCCEEEEecC-----------------CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccC
Confidence            3788999999999999875                 568999998 46665543  3456899999999986 9999999


Q ss_pred             CCEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .++|++|+.++    ....+. ......|.+|++|++|+||+++..                                  
T Consensus       208 ~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----------------------------------  249 (300)
T 2qc5_A          208 GNKIGRITTTG----EISEYDIPTPNARPHAITAGKNSEIWFTEWG----------------------------------  249 (300)
T ss_dssp             TTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETT----------------------------------
T ss_pred             CCEEEEEcCCC----cEEEEECCCCCCCceEEEECCCCCEEEeccC----------------------------------
Confidence            99999999743    232222 112246899999999999999866                                  


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                        .+.|.+++++|++. .+..+.+  ...+..++. .+|+||+++. + .|.+++++
T Consensus       250 --~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          250 --ANQIGRITNDNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             --TTEEEEECTTSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             --CCeEEEECCCCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence              56899999988775 4544433  223455554 4789999998 6 99998764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.60  E-value=6.8e-14  Score=128.84  Aligned_cols=158  Identities=12%  Similarity=0.101  Sum_probs=124.9

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |-+|++++ +|+||+||..                 .++|++++.+...++.+. .++..|+|||++..++.||+++...
T Consensus        39 ~~~l~~d~~~~~lywtD~~-----------------~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~  101 (628)
T 4a0p_A           39 ASALDFDVTDNRIYWTDIS-----------------LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGT  101 (628)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEECCCCEEEEEECC-----------------CCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCC
Confidence            34788887 5789999987                 679999998754555544 4667899999999888899999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ++|.+++++|.   ..+++.......|.+|++|+ +|.||+++++.                                  
T Consensus       102 ~~I~v~~~dG~---~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~----------------------------------  144 (628)
T 4a0p_A          102 NRIEVSKLDGQ---HRQVLVWKDLDSPRALALDPAEGFMYWTEWGG----------------------------------  144 (628)
T ss_dssp             TEEEEEETTST---TCEEEECSSCCCEEEEEEETTTTEEEEEECSS----------------------------------
T ss_pred             CEEEEEecCCC---cEEEEEeCCCCCcccEEEccCCCeEEEeCCCC----------------------------------
Confidence            99999999873   23444422234699999997 78999999762                                  


Q ss_pred             cceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          159 AGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       159 ~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                       .++|.+++.+|.....+..  +  +..+++++.+  +++||+++...++|.++++++...+
T Consensus       145 -~~~I~r~~~dG~~~~~l~~--~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~  201 (628)
T 4a0p_A          145 -KPKIDRAAMDGSERTTLVP--N--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE  201 (628)
T ss_dssp             -SCEEEEEETTSCSCEEEEC--S--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             -CCEEEEEeCCCCceEEEEC--C--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE
Confidence             4689999999987666653  2  4567888765  6999999999999999999886544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=1.8e-13  Score=112.16  Aligned_cols=155  Identities=17%  Similarity=0.256  Sum_probs=116.6

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++++|+||+++..                 .+.|+++|+ +++.....  .....|++|+++++|+ ||+++..
T Consensus       100 ~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~  160 (299)
T 2z2n_A          100 APYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQ  160 (299)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETT
T ss_pred             CceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCC
Confidence            3678999999999999875                 568999998 46665543  2456899999999986 9999998


Q ss_pred             CCEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .+.|++++.++    ....+. ......|.++++|++|++|++...                                  
T Consensus       161 ~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----------------------------------  202 (299)
T 2z2n_A          161 NNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEII----------------------------------  202 (299)
T ss_dssp             TTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETT----------------------------------
T ss_pred             CCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccC----------------------------------
Confidence            89999999832    333331 112235889999999999999866                                  


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCccc
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                        .+.|.+++++|+.. .+..+..  ...+..++.+ +|+||+++...+.|.+++.++...
T Consensus       203 --~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~  258 (299)
T 2z2n_A          203 --GNKIGRITTSGEIT-EFKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIE  258 (299)
T ss_dssp             --TTEEEEECTTCCEE-EEECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEE
T ss_pred             --CceEEEECCCCcEE-EEECCCC--CCCceeEEECCCCCEEEeccCCceEEEECCCCceE
Confidence              45899999988765 3544422  3356666654 689999999999999999865433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=1.2e-13  Score=113.17  Aligned_cols=152  Identities=14%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++++|++|+++..                 .+.|+++|. +++++..  ......|.+|+++++|+ ||+++..
T Consensus       142 ~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~  202 (299)
T 2z2n_A          142 YPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEII  202 (299)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETT
T ss_pred             CCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccC
Confidence            3688999999999999875                 568999998 5777654  23467799999999987 9999998


Q ss_pred             CCEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .+.|.+|++++    ....+. ......|.+|++|++|++|++...                                  
T Consensus       203 ~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----------------------------------  244 (299)
T 2z2n_A          203 GNKIGRITTSG----EITEFKIPTPNARPHAITAGAGIDLWFTEWG----------------------------------  244 (299)
T ss_dssp             TTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETT----------------------------------
T ss_pred             CceEEEECCCC----cEEEEECCCCCCCceeEEECCCCCEEEeccC----------------------------------
Confidence            89999999832    232332 112246899999999999999866                                  


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                        .+.|.++|++|++. .+..+.+  ...+..++..+++||+++. .+.|.+++..+.
T Consensus       245 --~~~i~~~d~~g~~~-~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          245 --ANKIGRLTSNNIIE-EYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             --TTEEEEEETTTEEE-EEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             --CceEEEECCCCceE-EEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence              46899999988654 5554432  2335555447899999986 689999987654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.58  E-value=4e-14  Score=121.60  Aligned_cols=159  Identities=15%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE------ecCccccceeEEecC---CCE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL------HEGFYFANGVALSKD---ENF   71 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~------~~~~~~pnGi~~~~d---g~~   71 (225)
                      .|.+|++++||+|||++..                  |+|++++ + ++.+.+      ..+...|+||+++||   ++.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~------------------g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~   91 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERP------------------GRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPY   91 (352)
T ss_dssp             CEEEEEECTTSCEEEEETT------------------TEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CceEEEEcCCCeEEEEeCC------------------CeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCE
Confidence            4789999999999999763                  6899998 3 555433      234678999999999   778


Q ss_pred             EEEEeCCC-----CEEEEEEecCCCCCceeEEeccCC------CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHH
Q 047259           72 VVVCESWK-----FRCRRYWLKGPRQGRLESFIEHLP------GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWK  140 (225)
Q Consensus        72 Lyv~~~~~-----~~I~~~~~~~~~~~~~~~~~~~~~------g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~  140 (225)
                      |||+++..     ++|+||+.++..+...+++....+      ..|.+|++++||+||++.........           
T Consensus        92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~-----------  160 (352)
T 2ism_A           92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYEREL-----------  160 (352)
T ss_dssp             EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGG-----------
T ss_pred             EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCcc-----------
Confidence            99999864     799999987533334444443222      25889999999999999865322100           


Q ss_pred             HHHhhhhhhhhhccCCCCcceEEEEECCCCcE-------------EEEEECCCCCcccceeEEEEe--CCEEEEeeCCCC
Q 047259          141 LLQAYPELINLLIPLGNDAGARIVKVDTHGKI-------------IMDFNDPNATYISFVTSAVEF--EDNLYMASIQSK  205 (225)
Q Consensus       141 ~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~-------------~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~  205 (225)
                           +      + ......++|+|++++|++             .+.+..  |  +..+..++.+  +++||+++...+
T Consensus       161 -----~------~-d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~--G--~rnp~g~a~d~~~g~l~v~d~g~~  224 (352)
T 2ism_A          161 -----A------Q-DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSL--G--HRNPQGLAWHPKTGELFSSEHGPS  224 (352)
T ss_dssp             -----G------G-CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEE--C--CSEECCCEECTTTCCEEEEEECC-
T ss_pred             -----c------c-CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEE--c--CCCcccEEEECCCCCEEEEEcCCC
Confidence                 0      0 011126899999999943             222322  1  2334445554  689999999887


Q ss_pred             e
Q 047259          206 F  206 (225)
Q Consensus       206 ~  206 (225)
                      .
T Consensus       225 ~  225 (352)
T 2ism_A          225 G  225 (352)
T ss_dssp             -
T ss_pred             C
Confidence            6

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.55  E-value=5.2e-13  Score=113.15  Aligned_cols=159  Identities=15%  Similarity=0.175  Sum_probs=113.3

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCc-------cccceeEE---ecC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGF-------YFANGVAL---SKD   68 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~-------~~pnGi~~---~~d   68 (225)
                      ||++++.++ +|++||++..                 .|.|+++++..+..+.+ .+++       ..|.||.+   +|+
T Consensus        14 yPE~~~wd~~~g~~~vs~l~-----------------~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~   76 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLY-----------------KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS   76 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETT-----------------TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC
T ss_pred             CCcCccCcCCCCEEEEEecc-----------------CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC
Confidence            899999977 7899999997                 68999999975554443 3332       36799999   799


Q ss_pred             CCEEEE-EeC------------CCCEEEEEEecCCCCCceeEEec------c-------CCCCCCceEECCCCCEEEEee
Q 047259           69 ENFVVV-CES------------WKFRCRRYWLKGPRQGRLESFIE------H-------LPGGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        69 g~~Lyv-~~~------------~~~~I~~~~~~~~~~~~~~~~~~------~-------~~g~Pd~i~~d~~G~l~v~~~  122 (225)
                      ++ ||| ++.            +.+.|++|++++...+.....++      .       ..+.+++|++|++|+.||++.
T Consensus        77 gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s  155 (334)
T 2p9w_A           77 KR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA  155 (334)
T ss_dssp             CE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred             Cc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence            65 776 442            46899999987211122222222      1       123589999999999999987


Q ss_pred             cCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcc-eEEEEECCCCcEEEEE--ECCCCCcccceeEEEEe--CCEE
Q 047259          123 KMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAG-ARIVKVDTHGKIIMDF--NDPNATYISFVTSAVEF--EDNL  197 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~-~~V~~~d~~G~~~~~~--~~p~g~~~~~~t~~~~~--~~~L  197 (225)
                      .                                    . +.|++++++|+.+..+  ..|......+.++++..  +..|
T Consensus       156 ~------------------------------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~L  199 (334)
T 2p9w_A          156 L------------------------------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKL  199 (334)
T ss_dssp             E------------------------------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEE
T ss_pred             C------------------------------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEE
Confidence            6                                    5 7899999999854433  33333223457777765  5678


Q ss_pred             EEeeCCCCeEEEEeCCC
Q 047259          198 YMASIQSKFVGKLPLNT  214 (225)
Q Consensus       198 yv~~~~~~~i~~~~~~~  214 (225)
                      ++.+. .++|.+|++..
T Consensus       200 iv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          200 IAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             EEESS-SSSEEEEECSS
T ss_pred             EEEcC-CCeEEEEcCCC
Confidence            88887 99999999884

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=6.1e-13  Score=116.36  Aligned_cols=159  Identities=10%  Similarity=0.071  Sum_probs=117.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      .|.+|+++++|+||+++..                 .++|.++|.+++.++.+......|. ++++++++.||+++...+
T Consensus       132 ~P~~la~d~~g~lyv~d~~-----------------~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~  193 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRD-----------------DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGT  193 (409)
T ss_dssp             CEEEEEECSTTEEEEEETT-----------------TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTT
T ss_pred             CceEEEEeCCCCEEEEecC-----------------CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCC
Confidence            4789999999999999986                 5799999998888888777777788 999999999999998665


Q ss_pred             -EEEEEEecCCCCCceeEEe---ccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           81 -RCRRYWLKGPRQGRLESFI---EHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        81 -~I~~~~~~~~~~~~~~~~~---~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                       +|++++.++...  ...+.   ......|.++++++ +|+||+++.                                 
T Consensus       194 ~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---------------------------------  238 (409)
T 3hrp_A          194 HTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---------------------------------  238 (409)
T ss_dssp             CEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEECT---------------------------------
T ss_pred             ceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---------------------------------
Confidence             999999875311  22221   11235699999999 789999542                                 


Q ss_pred             CCCcceEEEEECCCCcEEEEEEC--CCCCccccee-EEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          156 GNDAGARIVKVDTHGKIIMDFND--PNATYISFVT-SAVEF--EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~--p~g~~~~~~t-~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                          .+.|.++|+++.....+..  ..+.....+. .++.+  +++||+++...++|.+++.++..
T Consensus       239 ----~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~  300 (409)
T 3hrp_A          239 ----NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC  300 (409)
T ss_dssp             ----TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE
T ss_pred             ----CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE
Confidence                3589999998654444421  1111111222 55543  69999999999999999988753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=7.6e-13  Score=111.99  Aligned_cols=160  Identities=13%  Similarity=0.073  Sum_probs=115.9

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc------ccceeEEecCCCEEEEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY------FANGVALSKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~------~pnGi~~~~dg~~Lyv~   75 (225)
                      |++++++++|++|+++..                 .+.|+++|..++++........      .|++|++  +++.|||+
T Consensus        86 p~~i~~~~~g~lyv~~~~-----------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~  146 (328)
T 3dsm_A           86 PRYIHFLSDEKAYVTQIW-----------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVN  146 (328)
T ss_dssp             EEEEEEEETTEEEEEEBS-----------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEE
T ss_pred             CcEEEEeCCCeEEEEECC-----------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEE
Confidence            678999889999999864                 5789999998888765544444      8999999  45679999


Q ss_pred             eCC-CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           76 ESW-KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        76 ~~~-~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      +.+ .+.|.++++++.   .....+. ....|.++++|++|++|++..+.....                 |     .  
T Consensus       147 ~~~~~~~v~viD~~t~---~~~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~-----------------~-----~--  198 (328)
T 3dsm_A          147 CWSYQNRILKIDTETD---KVVDELT-IGIQPTSLVMDKYNKMWTITDGGYEGS-----------------P-----Y--  198 (328)
T ss_dssp             ECTTCCEEEEEETTTT---EEEEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTC-----------------S-----S--
T ss_pred             cCCCCCEEEEEECCCC---eEEEEEE-cCCCccceEEcCCCCEEEEECCCccCC-----------------c-----c--
Confidence            984 889999998753   2211121 344699999999999999987621000                 0     0  


Q ss_pred             CCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          155 LGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      ..+  .+.|.++|++ ++++..+..+.|.   .+..++..  +++||+++.   .|.+++..+..
T Consensus       199 ~~~--~~~v~~id~~t~~v~~~~~~~~g~---~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~  255 (328)
T 3dsm_A          199 GYE--APSLYRIDAETFTVEKQFKFKLGD---WPSEVQLNGTRDTLYWINN---DIWRMPVEADR  255 (328)
T ss_dssp             CBC--CCEEEEEETTTTEEEEEEECCTTC---CCEEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred             ccC--CceEEEEECCCCeEEEEEecCCCC---CceeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence            000  3689999986 7888788876553   45666654  789999975   88899886543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.53  E-value=2e-13  Score=117.45  Aligned_cols=164  Identities=16%  Similarity=0.199  Sum_probs=111.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe------cCccccceeEEecC---CCE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH------EGFYFANGVALSKD---ENF   71 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~------~~~~~pnGi~~~~d---g~~   71 (225)
                      .|.+|++++||+|||++..                  |+|++++.+ ++ +.+.      .+...|+||+++||   ++.
T Consensus        30 ~P~~ia~~pdG~l~V~e~~------------------g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERP------------------GRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             CEEEEEEEETTEEEEEETT------------------TEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCeEEEEcCCCeEEEEeCC------------------CEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCE
Confidence            4789999999999999763                  789999864 66 4432      34678999999998   668


Q ss_pred             EEEEeCC---C----CEEEEEEecCC--CCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhH
Q 047259           72 VVVCESW---K----FRCRRYWLKGP--RQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDK  138 (225)
Q Consensus        72 Lyv~~~~---~----~~I~~~~~~~~--~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~  138 (225)
                      |||+++.   .    ++|+|++.++.  .+...+++....+    ..|.+|++++||+||++.........   .     
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~---~-----  161 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL---A-----  161 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG---G-----
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc---c-----
Confidence            9999874   3    79999998753  2333444433222    25889999999999999865321100   0     


Q ss_pred             HHHHHhhhhhhhhhccCCCCcceEEEEECCCCcE--------EEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCe--
Q 047259          139 WKLLQAYPELINLLIPLGNDAGARIVKVDTHGKI--------IMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKF--  206 (225)
Q Consensus       139 r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~--------~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~--  206 (225)
                                    + ......++|+|++++|++        .+.+..  |  +..+..++.+  +++||+++...+.  
T Consensus       162 --------------~-d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~--G--~rnp~Gla~d~~~g~l~v~d~g~~~~d  222 (354)
T 3a9g_A          162 --------------Q-DLSSLAGKILRVDEEGRPPADNPFPNSPIWSY--G--HRNPQGIDWHRASGVMVATEHGPVGHD  222 (354)
T ss_dssp             --------------T-CTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE--C--CSCCCEEEECTTTCCEEEEECCSSSCC
T ss_pred             --------------c-CCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE--c--cCCcceEEEeCCCCCEEEEecCCCCCc
Confidence                          0 001126899999999973        233332  2  2345556654  6899999998765  


Q ss_pred             -EEEEe
Q 047259          207 -VGKLP  211 (225)
Q Consensus       207 -i~~~~  211 (225)
                       |-++.
T Consensus       223 ei~~i~  228 (354)
T 3a9g_A          223 EVNIIL  228 (354)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence             55443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.52  E-value=7.2e-13  Score=109.64  Aligned_cols=167  Identities=17%  Similarity=0.200  Sum_probs=115.4

Q ss_pred             CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      +|++++++++|+ ||+++..                 .+.|++++++++ .+........|++|++++||+ ||+++...
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~-----------------~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~   89 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVR-----------------QNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH-LIACSHGL   89 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGG-----------------GTEEEEEETTSC-EEEEESSCSSEEEEEECTTCC-EEEEETTT
T ss_pred             cccCCeEeCCCCEEEEEeCC-----------------CCEEEEEECCCC-eEEEECCCCCcceeeECCCCc-EEEEecCC
Confidence            478899999998 9999875                 579999999866 666666677899999999998 99999988


Q ss_pred             CEEEEEEecCCCCCceeEEecc---C-CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEH---L-PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~---~-~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      ++|.+++++++   ..+.+...   . ...|.++++|++|++|+++..... ...+                  ......
T Consensus        90 ~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~-~~~~------------------~~~~~~  147 (296)
T 3e5z_A           90 RRLERQREPGG---EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGI-DKPE------------------EGYGGE  147 (296)
T ss_dssp             TEEEEECSTTC---CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHH-HCGG------------------GSSCCC
T ss_pred             CeEEEEcCCCC---cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccc-cccc------------------cccccc
Confidence            99999998532   33333321   1 135889999999999999753100 0000                  000000


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCC
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      .....+.|++++++|++......     +..+..++.. ++++++++...++|.+++++
T Consensus       148 ~~~~~~~l~~~~~~g~~~~~~~~-----~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          148 MELPGRWVFRLAPDGTLSAPIRD-----RVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             CCSSSCEEEEECTTSCEEEEECC-----CSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCEEEeecC-----CCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence            00014689999999876543321     2345566653 45544999999999999986

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.52  E-value=3.8e-13  Score=113.20  Aligned_cols=170  Identities=11%  Similarity=0.044  Sum_probs=110.6

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--------------------Ccccc
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--------------------GFYFA   60 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------------------~~~~p   60 (225)
                      +|++++++++|++|+++..                 .++|++++.++++++....                    ....|
T Consensus        20 ~p~~i~~d~~g~~l~v~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p   82 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQ-----------------DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRT   82 (322)
T ss_dssp             CCCCEECCTTCSSEEEECT-----------------TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCE
T ss_pred             CceEEEEcCCCCEEEEEcC-----------------CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCC
Confidence            4899999999995555554                 5789999987666665431                    12469


Q ss_pred             ceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC----CCCCCceEECC-CCCEEEEeecCCchhhhhhhcC
Q 047259           61 NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL----PGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSC  135 (225)
Q Consensus        61 nGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~----~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~  135 (225)
                      .||+++++++.|||++.. +.|++++++++   ..+.+....    ...|+++++|+ +|+||+++...+...      .
T Consensus        83 ~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~------~  152 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCY-YHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD------R  152 (322)
T ss_dssp             EEEEEETTTTEEEEEETT-TEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT------T
T ss_pred             ceEEEcCCCCcEEEEECC-CCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccc------c
Confidence            999999833459999986 45899987642   233443211    13589999999 999999987632100      0


Q ss_pred             hhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCC
Q 047259          136 PDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      .....+..           ...  .+.|.++|+++..+..+..  +  +..+..++..  ++.|||++...++|.+++++
T Consensus       153 ~~~~~~~~-----------~~~--~g~v~~~d~~~~~~~~~~~--~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~  215 (322)
T 2fp8_A          153 GVQQIMDT-----------SDK--TGRLIKYDPSTKETTLLLK--E--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE  215 (322)
T ss_dssp             CHHHHHHH-----------TCC--CEEEEEEETTTTEEEEEEE--E--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred             ccceehcc-----------cCC--CceEEEEeCCCCEEEEecc--C--CccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            00111110           111  5889999997433333321  1  2234455543  45799999999999999988


Q ss_pred             C
Q 047259          214 T  214 (225)
Q Consensus       214 ~  214 (225)
                      +
T Consensus       216 ~  216 (322)
T 2fp8_A          216 G  216 (322)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.51  E-value=6.2e-13  Score=114.00  Aligned_cols=166  Identities=16%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-------ecCccccceeEEecC---CC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-------HEGFYFANGVALSKD---EN   70 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-------~~~~~~pnGi~~~~d---g~   70 (225)
                      .|.+|++.+||++|||+..                 .|+|++++.++++.+.+       ..+...+.||+++||   ++
T Consensus        33 ~P~~ia~~pdG~llVter~-----------------~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRD-----------------EATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             SEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred             CceEEEEcCCCcEEEEEec-----------------CCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC
Confidence            3678999999999999874                 58999998765665543       245678999999996   45


Q ss_pred             EEEEEeC--CCCEEEEEEecC-----CCCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHH
Q 047259           71 FVVVCES--WKFRCRRYWLKG-----PRQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKW  139 (225)
Q Consensus        71 ~Lyv~~~--~~~~I~~~~~~~-----~~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r  139 (225)
                      +|||+.+  ..++|.|+..++     ..+...+++....+    ..+..|++++||.||++.......+.   .      
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~---~------  166 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGL---S------  166 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGG---T------
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCcc---c------
Confidence            7999754  567999999875     23334444443333    14677999999999999876432110   0      


Q ss_pred             HHHHhhhhhhhhhccCCCCcceEEEEECCCCcE--------EEEEECCCCCcccceeEEEEe-CCEEEEeeCCCC---eE
Q 047259          140 KLLQAYPELINLLIPLGNDAGARIVKVDTHGKI--------IMDFNDPNATYISFVTSAVEF-EDNLYMASIQSK---FV  207 (225)
Q Consensus       140 ~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~--------~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~---~i  207 (225)
                                   + ......++|+|++++|++        .+++..  |  +.++..++.+ +|.||+++.+.+   .|
T Consensus       167 -------------q-d~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~--G--~RNp~Gla~dp~G~L~~~d~g~~~~del  228 (347)
T 3das_A          167 -------------Q-DRKSLGGKILRMTPDGEPAPGNPFPGSPVYSY--G--HRNVQGLAWDDKQRLFASEFGQDTWDEL  228 (347)
T ss_dssp             -------------T-CTTCSTTCEEEECTTSSBCTTCSSTTCCEEEB--C--CSBCCEEEECTTCCEEEEECCSSSCEEE
T ss_pred             -------------c-CCCCCCCEEEEEeCCCCccCCCCCCCCeEEee--C--CCCcceEEECCCCCEEEEecCCCCCcee
Confidence                         0 011127899999999973        234443  2  3445556654 689999998764   45


Q ss_pred             EEE
Q 047259          208 GKL  210 (225)
Q Consensus       208 ~~~  210 (225)
                      -++
T Consensus       229 n~i  231 (347)
T 3das_A          229 NAI  231 (347)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=4.6e-13  Score=113.33  Aligned_cols=135  Identities=13%  Similarity=0.112  Sum_probs=96.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--GFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .|++++++++|++|++..+...+. .      .....+.|+++|+.++++.....  ....|++|+++||+++||+++. 
T Consensus       173 ~p~~i~~~~dG~l~v~~~~~~~~~-~------~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          173 QPTSLVMDKYNKMWTITDGGYEGS-P------YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             CBCCCEECTTSEEEEEBCCBCTTC-S------SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             CccceEEcCCCCEEEEECCCccCC-c------cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence            378999999999999988621000 0      00114799999998887764432  2358999999999999999986 


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                        .|+++++++..... ..++......|++|++|+ +|+|||++...-                              ..
T Consensus       245 --~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y------------------------------~~  291 (328)
T 3dsm_A          245 --DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDY------------------------------QQ  291 (328)
T ss_dssp             --SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTS------------------------------SS
T ss_pred             --EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEccccc------------------------------cc
Confidence              89999987543221 122221135799999998 789999984310                              01


Q ss_pred             CcceEEEEECCCCcEEEEEEC
Q 047259          158 DAGARIVKVDTHGKIIMDFND  178 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~  178 (225)
                        .+.|.++|++|+++..+..
T Consensus       292 --~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          292 --QGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             --EEEEEEECTTCCEEEEEEE
T ss_pred             --CCEEEEECCCCCEEEEEEe
Confidence              7899999999999988874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.49  E-value=5.5e-14  Score=130.95  Aligned_cols=159  Identities=13%  Similarity=0.106  Sum_probs=116.0

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC----CeEEEE-ecCccccceeEEecCCCEEEEE
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL----EETTVL-HEGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~----~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      |.+|++++ +++||++|..                 .++|++++.++    ...+.+ ..++..|.||++++.++.|||+
T Consensus       408 p~gla~d~~~~~Ly~sD~~-----------------~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~t  470 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT  470 (699)
T ss_dssp             CCCCEEETTTTEEEECCTT-----------------TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEEC
T ss_pred             eEEEccccccCeEEEEecC-----------------CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEE
Confidence            67888887 5689999886                 46788888763    122223 3457789999999777779999


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      +...++|.++++++.   ...+++......|.+|++|+ .|+||+++.+.                              
T Consensus       471 D~~~~~I~v~d~dg~---~~~~l~~~~~~~P~giavDp~~g~ly~td~~~------------------------------  517 (699)
T 1n7d_A          471 DSVLGTVSVADTKGV---KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT------------------------------  517 (699)
T ss_dssp             CTTTSCEEEEBSSSC---CEEEECCCSSCCCCCEECCSSSSCCEECCCSS------------------------------
T ss_pred             eccCCeEEEEecCCC---ceEEEEeCCCCCcceEEEccCCCcEEEcccCC------------------------------
Confidence            999999999998763   33444432234699999998 57899998761                              


Q ss_pred             CCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          155 LGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                           .+.|.+++.+|+...++...  . +..+.+++.+  +++||+++...++|.++++++...+
T Consensus       518 -----~~~I~~~~~dG~~~~~l~~~--~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          518 -----PAKIKKGGLNGVDIYSLVTE--N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             -----SCCEEBCCSSSCCCCEESCS--S-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred             -----CCeEEEEeCCCCCeeEEEeC--C-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence                 35789999998766555431  1 3456666654  6999999999999999999875443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=6.3e-13  Score=118.74  Aligned_cols=168  Identities=11%  Similarity=0.071  Sum_probs=115.0

Q ss_pred             CCcEEE-------cCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEE-----EEecCccccceeEEec
Q 047259            2 TNDVIE-------ASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETT-----VLHEGFYFANGVALSK   67 (225)
Q Consensus         2 pndv~~-------~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~-----~~~~~~~~pnGi~~~~   67 (225)
                      |++|++       +++|+ ||+++....  ..         .....|+.++... |.+.     .....+..|+|++++|
T Consensus       188 p~~ia~~~~~~~~d~~G~~lyvad~~~~--~~---------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp  256 (496)
T 3kya_A          188 IRSIAFNKKIEGYADEAEYMIVAIDYDG--KG---------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHP  256 (496)
T ss_dssp             EEEEEECCCBTTTBCTTCEEEEEECCCT--TG---------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECT
T ss_pred             CcEEEEeecccccCCCCCEEEEEeCCCC--Cc---------ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcC
Confidence            788999       99997 999999721  00         0123578886543 3332     2223567999999999


Q ss_pred             CCCEEEEEeCCCCEEEEEEec-------CCCC------C---ceeEEecc-CCCCCCceEECCCCC-EEEEeecCCchhh
Q 047259           68 DENFVVVCESWKFRCRRYWLK-------GPRQ------G---RLESFIEH-LPGGPDNINLAPDGS-FWVALIKMNQTGV  129 (225)
Q Consensus        68 dg~~Lyv~~~~~~~I~~~~~~-------~~~~------~---~~~~~~~~-~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~  129 (225)
                      +++.||+++...++|++|+++       +...      .   ..+.+... ....|.+|+++++|+ ||+++..      
T Consensus       257 ~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~------  330 (496)
T 3kya_A          257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN------  330 (496)
T ss_dssp             TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT------
T ss_pred             CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC------
Confidence            777899999999999999997       4322      0   01122221 224688999999998 8999987      


Q ss_pred             hhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcE--E---EEEECC-------CC----Cccccee-EEEE
Q 047259          130 RAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKI--I---MDFNDP-------NA----TYISFVT-SAVE  192 (225)
Q Consensus       130 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~--~---~~~~~p-------~g----~~~~~~t-~~~~  192 (225)
                                                    ..+|.+++.+|..  +   ..+...       +|    ..+..|. .++.
T Consensus       331 ------------------------------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v  380 (496)
T 3kya_A          331 ------------------------------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV  380 (496)
T ss_dssp             ------------------------------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred             ------------------------------CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence                                          5688888776532  1   233221       11    1255677 5555


Q ss_pred             --------eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          193 --------FEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       193 --------~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                              .++.|||++..+++|.++..++.-
T Consensus       381 d~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v  412 (496)
T 3kya_A          381 KNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIV  412 (496)
T ss_dssp             ECTTCCSSCCEEEEEEEGGGTEEEEECTTCBE
T ss_pred             ccccccccCCCeEEEEECCCCEEEEEeCCCCE
Confidence                    358999999999999999976643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=4.5e-12  Score=104.93  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             CCCcEEEcCCCcEEEE-------cCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-----CccccceeEEecC
Q 047259            1 FTNDVIEASDGSLYFT-------VSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-----GFYFANGVALSKD   68 (225)
Q Consensus         1 ~pndv~~~~dG~iy~t-------d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~pnGi~~~~d   68 (225)
                      .|++++++++|++|++       +..                 .+.|+++|..+++++.+..     ....|.+|++++|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~-----------------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~   81 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKP-----------------AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD   81 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEE-----------------CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS
T ss_pred             CccCceECCCCCEEEEEeccccCCCC-----------------CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC
Confidence            4789999999999999       433                 5789999977788766543     3367999999999


Q ss_pred             CCEEEEEeCCCCEEEEEEecCCCCCceeEE-ecc---CC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHH
Q 047259           69 ENFVVVCESWKFRCRRYWLKGPRQGRLESF-IEH---LP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQ  143 (225)
Q Consensus        69 g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~~---~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~  143 (225)
                      ++.|||++... .|++|+.++    ....+ ...   .+ ..|.++++|++|++|++..........+..          
T Consensus        82 ~g~l~v~~~~~-~l~~~d~~g----~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~----------  146 (314)
T 1pjx_A           82 ANQLFVADMRL-GLLVVQTDG----TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR----------  146 (314)
T ss_dssp             SSEEEEEETTT-EEEEEETTS----CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB----------
T ss_pred             CCcEEEEECCC-CEEEEeCCC----CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc----------
Confidence            33599998754 899998763    33333 221   11 258999999999999998752100000000          


Q ss_pred             hhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-----CC-EEEEeeCCCCeEEEEeCC
Q 047259          144 AYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-----ED-NLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       144 ~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-----~~-~Lyv~~~~~~~i~~~~~~  213 (225)
                         .      ...  ..+.|++++++|+.......     ...+..++..     ++ .||+++...++|.+++++
T Consensus       147 ---~------~~~--~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          147 ---S------MQE--KFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             ---T------TSS--SCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             ---c------ccC--CCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence               0      001  15789999999877544332     1223444433     34 799999999999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=2.7e-12  Score=107.11  Aligned_cols=166  Identities=15%  Similarity=0.222  Sum_probs=114.6

Q ss_pred             CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      ++++++.+++|+ ||+++..                 .++|++++.+ ++++........|+|+++++||+ ||+++...
T Consensus        46 ~~egp~~~~~g~~l~~~d~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~  106 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLV-----------------GRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQR-LVHCEHGR  106 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETT-----------------TTEEEEEETT-SCEEEEEESCSCEEEEEECTTSC-EEEEETTT
T ss_pred             CccCCeEeCCCCEEEEEECC-----------------CCEEEEEeCC-CCEEEEeCCCCccceeeECCCCC-EEEEECCC
Confidence            357889999997 9999876                 6789999984 77777666677899999999998 99999988


Q ss_pred             CEEEEEEecCCCCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      ++|.+++.++    ..+.+.....    ..|+.+++|++|++|+++....... .+ ...              .   ..
T Consensus       107 ~~v~~~~~~g----~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~-~~-~~~--------------~---~~  163 (305)
T 3dr2_A          107 RAITRSDADG----QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK-PS-QGC--------------P---AD  163 (305)
T ss_dssp             TEEEEECTTS----CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC-GG-GSC--------------C---CC
T ss_pred             CEEEEECCCC----CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc-cc-ccc--------------c---cc
Confidence            9999999764    3444443211    2588999999999999875311000 00 000              0   00


Q ss_pred             CCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCC-----CeEEEEeCCC
Q 047259          156 GNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQS-----KFVGKLPLNT  214 (225)
Q Consensus       156 ~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~-----~~i~~~~~~~  214 (225)
                      .....+.|.++|++ |++.... .     +..+..++..  +..||+++...     +.|.++++++
T Consensus       164 ~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          164 PELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             CSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             cccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            00115789999995 6664433 1     2235555543  46799999874     7999998764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.46  E-value=1.3e-11  Score=102.10  Aligned_cols=156  Identities=15%  Similarity=0.195  Sum_probs=113.3

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      ||+++++++||+||++....               ..+.|..+|..++++....  ....++.|++++  ++.||++...
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~---------------~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLY---------------GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             CEEEEEECSTTEEEEEECST---------------TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCC---------------CCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            67899999999999997631               1578999999988876654  344567788877  4579999999


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC-CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG-SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      .+.|+.||.++.  .....+.  .+ .|.|+.+.+|| ++|+++ +                                  
T Consensus        85 ~~~v~viD~~t~--~v~~~i~--~g-~~~g~glt~Dg~~l~vs~-g----------------------------------  124 (266)
T 2iwa_A           85 KNIGFIYDRRTL--SNIKNFT--HQ-MKDGWGLATDGKILYGSD-G----------------------------------  124 (266)
T ss_dssp             CSEEEEEETTTT--EEEEEEE--CC-SSSCCEEEECSSSEEEEC-S----------------------------------
T ss_pred             CCEEEEEECCCC--cEEEEEE--CC-CCCeEEEEECCCEEEEEC-C----------------------------------
Confidence            999999998642  1122221  22 34555555554 699987 5                                  


Q ss_pred             CcceEEEEECCC-CcEEEEEECC-CCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          158 DAGARIVKVDTH-GKIIMDFNDP-NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       158 ~~~~~V~~~d~~-G~~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                        .+.|..+|++ .+++..+... .++.+..+..+...+++||+..+.++.|.+++..+.
T Consensus       125 --s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg  182 (266)
T 2iwa_A          125 --TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDG  182 (266)
T ss_dssp             --SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTC
T ss_pred             --CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCC
Confidence              3589999997 4777777642 233344566666668999999999999999998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=1.3e-11  Score=102.76  Aligned_cols=159  Identities=9%  Similarity=0.041  Sum_probs=113.2

Q ss_pred             CCCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      ++++++.++ +++||++|..                 .++|+++|+++++.+.. .....|.+|++++||+ ||++.  .
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~-----------------~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~-l~v~~--~   72 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIP-----------------AKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGG-YVATI--G   72 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSS-EEEEE--T
T ss_pred             cccCCeEECCCCEEEEEECC-----------------CCEEEEEECCCCcEEEE-eCCCceEEEEECCCCC-EEEEE--C
Confidence            467888888 5689999986                 67999999987766543 3346799999999998 88887  4


Q ss_pred             CEEEEEEecCCCCCceeEEeccC---C-CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHL---P-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~---~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      +.|++|+++++   ..+.+....   + ..|+++++|++|++|++........                  .       .
T Consensus        73 ~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~------------------~-------~  124 (297)
T 3g4e_A           73 TKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP------------------A-------V  124 (297)
T ss_dssp             TEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT------------------T-------B
T ss_pred             CeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc------------------c-------c
Confidence            69999998642   344444321   1 2478899999999999986521100                  0       0


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCC
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      .....+.|++++++|++......     +..+..++.  +++.||+++...++|.+++++
T Consensus       125 ~~~~~~~l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          125 LERHQGALYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             CCTTCEEEEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCcEEEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence            00116899999999987654432     223555555  356899999999999999875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.45  E-value=1.9e-12  Score=114.93  Aligned_cols=174  Identities=13%  Similarity=0.221  Sum_probs=111.7

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe---c------CccccceeEEecC---
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH---E------GFYFANGVALSKD---   68 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---~------~~~~pnGi~~~~d---   68 (225)
                      .|.+|++++||+|||++..                 .++|++++..+++.+.+.   +      +...+.||+++||   
T Consensus        28 ~P~~~a~~pdG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~   90 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN   90 (454)
T ss_dssp             SEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT
T ss_pred             CceEEEEcCCCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCc
Confidence            3678999999999999875                 358999987556665442   1      2345569999997   


Q ss_pred             CCEEEEEeCC------------CCEEEEEEecCC--CCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhh
Q 047259           69 ENFVVVCESW------------KFRCRRYWLKGP--RQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVR  130 (225)
Q Consensus        69 g~~Lyv~~~~------------~~~I~~~~~~~~--~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~  130 (225)
                      ++.|||+.+.            ..+|+|++.+..  .+...+++....+    ..+.+|++++||+||++.......-..
T Consensus        91 ~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLA  170 (454)
T ss_dssp             SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGG
T ss_pred             CCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcc
Confidence            6789999974            469999998642  2334444443222    247899999999999998763211000


Q ss_pred             hh------hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCc-----------EEEEEECCCCCcccceeEEEEe
Q 047259          131 AI------QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGK-----------IIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       131 ~~------~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~-----------~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      .+      .+.|.......         + ......++|+|++++|+           ..++++.  |  +..+..++.+
T Consensus       171 ~~~~~~~~~~~p~~~~~~a---------q-~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~--G--~RNp~gla~d  236 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNG---------K-DYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFT  236 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHT---------T-CCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEEC
T ss_pred             ccccccccccccccccccc---------c-CCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE--C--CCCcceEEEC
Confidence            00      00000000000         0 01112789999999998           3455654  3  3567777765


Q ss_pred             -CCEEEEeeCCCC
Q 047259          194 -EDNLYMASIQSK  205 (225)
Q Consensus       194 -~~~Lyv~~~~~~  205 (225)
                       +|+||+++.+.+
T Consensus       237 p~G~L~~~d~g~~  249 (454)
T 1cru_A          237 PNGKLLQSEQGPN  249 (454)
T ss_dssp             TTSCEEEEEECSS
T ss_pred             CCCCEEEEecCCC
Confidence             689999998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.44  E-value=8.5e-12  Score=104.47  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=112.7

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      +|++++++++|+||+++..                 .+.|+++|.++++++.+. .....|.+|++++||+ ||++....
T Consensus        46 ~~~~~~~~~~g~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~  107 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVF-----------------EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGD  107 (333)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTT
T ss_pred             cccCcEECCCCCEEEEECC-----------------CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-EEEEeCCC
Confidence            3678999999999999775                 578999999878776654 4456799999999997 88988776


Q ss_pred             ----CEEEEEEecCCCCCceeEEec-c-CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           80 ----FRCRRYWLKGPRQGRLESFIE-H-LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        80 ----~~I~~~~~~~~~~~~~~~~~~-~-~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                          +.|+++++++.   ..+.+.. . ....|.++++|++|++|++......                           
T Consensus       108 ~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~---------------------------  157 (333)
T 2dg1_A          108 FKSTGGIFAATENGD---NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS---------------------------  157 (333)
T ss_dssp             SSSCCEEEEECTTSC---SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT---------------------------
T ss_pred             CCCCceEEEEeCCCC---EEEEEEccCccCCcccceEECCCCCEEEEeccccc---------------------------
Confidence                79999998753   2221221 1 1235789999999999998864110                           


Q ss_pred             cCCCCcceEEEEECCCC-cEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCC
Q 047259          154 PLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                       ..  ..+.|+++++++ ++......     ...+..++..  ++.||+++...+.|.++++++
T Consensus       158 -~~--~~~~l~~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          158 -TN--PLGGVYYVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             -TB--CCEEEEEECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             -cC--CCceEEEEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence             00  157899999986 44332221     2234455543  357999998889999999854

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.40  E-value=4.2e-12  Score=109.05  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=110.4

Q ss_pred             CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-E-------ecCccccceeEEecC---
Q 047259            1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-L-------HEGFYFANGVALSKD---   68 (225)
Q Consensus         1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~-------~~~~~~pnGi~~~~d---   68 (225)
                      .|.+|++++||+ ||+++.                  .|+|++++.+ ++... +       ..+...++||+++||   
T Consensus        19 ~P~~i~~~pdG~~l~V~e~------------------~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~   79 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR------------------GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQ   79 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET------------------TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHH
T ss_pred             CcEEEEEcCCCCEEEEEeC------------------CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCC
Confidence            377899999999 999976                  3789999875 54432 1       234557899999997   


Q ss_pred             CCEEEEEeCC-------CCEEEEEEecCC--CCCceeEEeccCC------CCCCceEECCCCCEEEEeecCCchhhhhhh
Q 047259           69 ENFVVVCESW-------KFRCRRYWLKGP--RQGRLESFIEHLP------GGPDNINLAPDGSFWVALIKMNQTGVRAIQ  133 (225)
Q Consensus        69 g~~Lyv~~~~-------~~~I~~~~~~~~--~~~~~~~~~~~~~------g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~  133 (225)
                      ++.|||+++.       .++|+|++.++.  .+...+++....+      ..+.+|++++||.||++.....+..     
T Consensus        80 ~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~-----  154 (353)
T 2g8s_A           80 SRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRP-----  154 (353)
T ss_dssp             HCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGG-----
T ss_pred             CCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCC-----
Confidence            6789999875       568999998642  2334444443333      1478999999999999986632210     


Q ss_pred             cChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcE-------------EEEEECCCCCcccceeEEEEe--CCEEE
Q 047259          134 SCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKI-------------IMDFNDPNATYISFVTSAVEF--EDNLY  198 (225)
Q Consensus       134 ~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~-------------~~~~~~p~g~~~~~~t~~~~~--~~~Ly  198 (225)
                                   ..    + ......++|+|++++|++             .+.+..  |  +..+..++.+  +++||
T Consensus       155 -------------~~----q-~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~--G--~rnp~gl~~d~~~g~l~  212 (353)
T 2g8s_A          155 -------------TA----Q-DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSY--G--IRNPQGMAMNPWSNALW  212 (353)
T ss_dssp             -------------GG----G-CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEE--C--CSEEEEEEEETTTTEEE
T ss_pred             -------------cc----C-CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEE--c--CcCccceEEECCCCCEE
Confidence                         00    0 001116899999999973             233432  2  3456667665  69999


Q ss_pred             EeeCCCC---eEEEE
Q 047259          199 MASIQSK---FVGKL  210 (225)
Q Consensus       199 v~~~~~~---~i~~~  210 (225)
                      +++...+   .|.++
T Consensus       213 ~~d~g~~~~dei~~i  227 (353)
T 2g8s_A          213 LNEHGPRGGDEINIP  227 (353)
T ss_dssp             EEEECSBSCEEEECC
T ss_pred             EEecCCCCCcEEeEe
Confidence            9998853   55544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=7.6e-12  Score=106.35  Aligned_cols=160  Identities=13%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-------CccccceeEEecCCCEEE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-------GFYFANGVALSKDENFVV   73 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-------~~~~pnGi~~~~dg~~Ly   73 (225)
                      .|++|+++++|+||++|.+.            ...+.++|+++|.+++++.....       ...+|++|+++++++.+|
T Consensus        68 ~p~gv~~d~~g~L~v~D~g~------------~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~y  135 (343)
T 2qe8_A           68 TVLGIKSDGNGIVWMLDNGN------------QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVY  135 (343)
T ss_dssp             CEEEEEECSSSEEEEEECHH------------HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEE
T ss_pred             EeeEEEEcCCCcEEEEcCCC------------CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEE
Confidence            37899999999999999751            01225689999988787443221       124689999998877899


Q ss_pred             EEeC---CCCEEEEEEecCCCCCceeEEec---------------c--------------CCCCCCceEECCCCC-EEEE
Q 047259           74 VCES---WKFRCRRYWLKGPRQGRLESFIE---------------H--------------LPGGPDNINLAPDGS-FWVA  120 (225)
Q Consensus        74 v~~~---~~~~I~~~~~~~~~~~~~~~~~~---------------~--------------~~g~Pd~i~~d~~G~-l~v~  120 (225)
                      |+++   ..+.|++++++++.   ...+.+               .              ....|+||+++++|+ ||++
T Consensus       136 vtd~~~~~~~~i~v~d~~~g~---~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~  212 (343)
T 2qe8_A          136 ISDPAPDDKAALIRVDLQTGL---AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS  212 (343)
T ss_dssp             EEECCSGGGCEEEEEETTTCC---EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE
T ss_pred             EEcCccCCCCeEEEEECCCCC---EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE
Confidence            9999   88999999986421   111110               0              012378999999995 8988


Q ss_pred             eecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC----CCcE--------EEEEECCCCCccccee
Q 047259          121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT----HGKI--------IMDFNDPNATYISFVT  188 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~----~G~~--------~~~~~~p~g~~~~~~t  188 (225)
                      +..                                    ...+++++.    ++.+        +..+.. .+    .+.
T Consensus       213 ~~~------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g----~pd  251 (343)
T 2qe8_A          213 PMH------------------------------------STSMYRIKSADLSNLQLTDAELGSKIERYSE-KP----ICD  251 (343)
T ss_dssp             ESS------------------------------------CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE-CC----SCS
T ss_pred             eCC------------------------------------CCeEEEEEHHHhcCCCCChhhhhcceEeccc-CC----CCc
Confidence            765                                    235566553    1110        011111 01    122


Q ss_pred             EEEE-eCCEEEEeeCCCCeEEEEeC-CCcc
Q 047259          189 SAVE-FEDNLYMASIQSKFVGKLPL-NTPE  216 (225)
Q Consensus       189 ~~~~-~~~~Lyv~~~~~~~i~~~~~-~~~~  216 (225)
                      +++. .+|.||++++..++|.+++. ++..
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence            3343 47899999999999999998 5543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.37  E-value=3e-11  Score=101.67  Aligned_cols=158  Identities=12%  Similarity=0.140  Sum_probs=104.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCeEEEEe----cCccccceeEEecCCCEEEEEe
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEETTVLH----EGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~----~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      ++.+++++||++|+++..                 .+.|+.|+.+ ++++....    .....|++++|+|||++||++.
T Consensus       143 ~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~  205 (347)
T 3hfq_A          143 IHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG  205 (347)
T ss_dssp             EEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe
Confidence            456999999999998876                 4566666654 46655432    2344789999999999999999


Q ss_pred             CCCCEEEEEEecCCCCCceeEEe--ccCC------CCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhh
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFI--EHLP------GGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPE  147 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~--~~~~------g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~  147 (225)
                      ...++|..|+++.. .+..+...  ...+      ..|.+++++++|+ ||++.....                      
T Consensus       206 ~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~----------------------  262 (347)
T 3hfq_A          206 ELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN----------------------  262 (347)
T ss_dssp             TTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT----------------------
T ss_pred             CCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC----------------------
Confidence            99999999988631 12222111  1122      2367799999997 778876511                      


Q ss_pred             hhhhhccCCCCcceEEEEECCCCcEE--EEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          148 LINLLIPLGNDAGARIVKVDTHGKII--MDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~V~~~d~~G~~~--~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                                  .-.|+.++++|+..  ..+... +.   .+..++.  ++..||+++..++.|.++.++.+
T Consensus       263 ------------~v~v~~~~~~g~~~~~~~~~~~-~~---~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          263 ------------TLAVFAVTADGHLTLIQQISTE-GD---FPRDFDLDPTEAFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             ------------EEEEEEECGGGCEEEEEEEECS-SS---CCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ------------EEEEEEECCCCcEEEeEEEecC-CC---CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence                        34566666667543  333331 22   2444544  35689999999899999976644

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.36  E-value=1.5e-11  Score=105.52  Aligned_cols=170  Identities=14%  Similarity=0.106  Sum_probs=107.6

Q ss_pred             CCcEEEcCC----CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe---EEEEec-------CccccceeEEec
Q 047259            2 TNDVIEASD----GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE---TTVLHE-------GFYFANGVALSK   67 (225)
Q Consensus         2 pndv~~~~d----G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~---~~~~~~-------~~~~pnGi~~~~   67 (225)
                      |++|++++|    |.||+++....            ....++|++++.+.++   .+.+.+       ....|++|+++|
T Consensus        77 p~gia~~pdf~~~g~lYv~~~~~~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p  144 (352)
T 2ism_A           77 LLGLALHPRFPQEPYVYAYRTVAE------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP  144 (352)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEECT------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT
T ss_pred             ceeEEECCCCCCCCEEEEEEecCC------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC
Confidence            789999998    78999987511            0113688888876442   223322       234689999999


Q ss_pred             CCCEEEEEeC-------------CCCEEEEEEecCCCC----------CceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259           68 DENFVVVCES-------------WKFRCRRYWLKGPRQ----------GRLESFIEHLPGGPDNINLAP-DGSFWVALIK  123 (225)
Q Consensus        68 dg~~Lyv~~~-------------~~~~I~~~~~~~~~~----------~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~  123 (225)
                      ||. |||+..             ..++|+|+++++...          ...+++...+ ..|.+|++|+ +|+||+++.+
T Consensus       145 dG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          145 DGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC
T ss_pred             CCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC
Confidence            995 999973             237999999876210          2334554322 3599999999 8999999988


Q ss_pred             CCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCc---------------EEEEEECCCCCccccee
Q 047259          124 MNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGK---------------IIMDFNDPNATYISFVT  188 (225)
Q Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~---------------~~~~~~~p~g~~~~~~t  188 (225)
                      ....           +.               .  +...|.++.+.+.               ....+..+.   ...++
T Consensus       223 ~~~~-----------~~---------------~--~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~ap~  271 (352)
T 2ism_A          223 PSGE-----------QG---------------Y--GHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ---GFPPG  271 (352)
T ss_dssp             C----------------------------------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT---CCCEE
T ss_pred             CCCC-----------CC---------------C--CCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC---CCCCc
Confidence            4310           00               0  0123444433220               001111111   12467


Q ss_pred             EEEEeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          189 SAVEFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       189 ~~~~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      +++..+|.||++++.+.+|.++++++..
T Consensus       272 G~~~~~G~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          272 NLAFFRGDLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEEEEEET
T ss_pred             ceEEECCEEEEEECCCCEEEEEEECCCC
Confidence            7777899999999999999999987654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.36  E-value=2.2e-10  Score=93.26  Aligned_cols=155  Identities=14%  Similarity=0.102  Sum_probs=114.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--GFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |.+++.++. ++||++...  +             +.+.|.++|.++|++.....  ...++.||++.  ++.||+....
T Consensus        22 ftqGL~~~~-~~LyestG~--~-------------g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~   83 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGE--T-------------GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWR   83 (243)
T ss_dssp             CEEEEEEET-TEEEEEECC--T-------------TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             ccccEEEEC-CEEEEECCC--C-------------CCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEee
Confidence            567888886 799999765  1             25689999999998876543  34455677766  5679999999


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      .++++.||.++.  .....|.  .++.+-|++.|. ++||+++..                                   
T Consensus        84 ~~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~dg-~~L~vSdgs-----------------------------------  123 (243)
T 3mbr_X           84 NHEGFVYDLATL--TPRARFR--YPGEGWALTSDD-SHLYMSDGT-----------------------------------  123 (243)
T ss_dssp             SSEEEEEETTTT--EEEEEEE--CSSCCCEEEECS-SCEEEECSS-----------------------------------
T ss_pred             CCEEEEEECCcC--cEEEEEe--CCCCceEEeeCC-CEEEEECCC-----------------------------------
Confidence            999999998652  2222332  344566777663 589999832                                   


Q ss_pred             cceEEEEECCC-CcEEEEEECC-CCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          159 AGARIVKVDTH-GKIIMDFNDP-NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       159 ~~~~V~~~d~~-G~~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                        ..|..+||+ .+++..+... ++..+...+.+...+|+||+..+.++.|.+++..+.
T Consensus       124 --~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG  180 (243)
T 3mbr_X          124 --AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASG  180 (243)
T ss_dssp             --SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTC
T ss_pred             --CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCC
Confidence              478999997 6888777652 344455667777779999999999999999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.36  E-value=8.8e-11  Score=96.51  Aligned_cols=155  Identities=12%  Similarity=0.069  Sum_probs=112.4

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEeCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--GFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |.+++.++ +|.||++...  +             +.+.|.++|.+++++.....  ...+..||+++  ++.||++...
T Consensus        44 ftqGL~~~-~~~LyestG~--~-------------g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~  105 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGL--N-------------GRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEE--T-------------TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             ccceEEEE-CCEEEEECCC--C-------------CCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEee
Confidence            45788888 7899999664  1             14589999999998766543  33455667775  5579999999


Q ss_pred             CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      .+.++.||+++.  .....|.  .++.+-|++.|. ++||+++ +                                   
T Consensus       106 ~~~v~v~D~~t~--~~~~ti~--~~~eG~glt~dg-~~L~~Sd-G-----------------------------------  144 (262)
T 3nol_A          106 NGLGFVWNIRNL--RQVRSFN--YDGEGWGLTHND-QYLIMSD-G-----------------------------------  144 (262)
T ss_dssp             SSEEEEEETTTC--CEEEEEE--CSSCCCCEEECS-SCEEECC-S-----------------------------------
T ss_pred             CCEEEEEECccC--cEEEEEE--CCCCceEEecCC-CEEEEEC-C-----------------------------------
Confidence            999999998752  2222232  334456777664 5799987 3                                   


Q ss_pred             cceEEEEECCC-CcEEEEEECC-CCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          159 AGARIVKVDTH-GKIIMDFNDP-NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       159 ~~~~V~~~d~~-G~~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                       ...|..+||+ .+++..+... +|+.+..++.+...+|+||+..+.++.|.+++..+.
T Consensus       145 -s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          145 -TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             -SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTC
T ss_pred             -CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCC
Confidence             2479999997 7888888763 344455666666678999999999999999988654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.34  E-value=5.3e-11  Score=102.27  Aligned_cols=172  Identities=14%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--------eEEEEecCccccceeEEecCCCEE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--------ETTVLHEGFYFANGVALSKDENFV   72 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~pnGi~~~~dg~~L   72 (225)
                      ++++|++++||.||||+...  +-.....+  .....|+|++++++..        ..++...++..|+||+++|+...|
T Consensus       136 ~~~~l~~~pDG~Lyvt~G~~--~~~~~~~d--~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l  211 (354)
T 3a9g_A          136 NGGRIRFGPDGMLYITTGDA--ADPRLAQD--LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVM  211 (354)
T ss_dssp             CCCCEEECTTSCEEEECCCT--TCGGGGTC--TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCE
T ss_pred             CCceEEECCCCcEEEEECCC--CCCccccC--CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCE
Confidence            47899999999999997541  11111111  1235789999998732        246677889999999999944459


Q ss_pred             EEEeCCCCE---EEEEEecCCCCC------------ceeEEec--cCCCCCCceEE-------CCCCCEEEEeecCCchh
Q 047259           73 VVCESWKFR---CRRYWLKGPRQG------------RLESFIE--HLPGGPDNINL-------APDGSFWVALIKMNQTG  128 (225)
Q Consensus        73 yv~~~~~~~---I~~~~~~~~~~~------------~~~~~~~--~~~g~Pd~i~~-------d~~G~l~v~~~~~~~~~  128 (225)
                      |+++.+.++   |.++.. +...+            .......  .....|.||++       +.+|++|+++..     
T Consensus       212 ~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~-----  285 (354)
T 3a9g_A          212 VATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR-----  285 (354)
T ss_dssp             EEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT-----
T ss_pred             EEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC-----
Confidence            999998765   554432 21111            0011111  11235899999       578999999866     


Q ss_pred             hhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--CcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCC-C
Q 047259          129 VRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--GKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQ-S  204 (225)
Q Consensus       129 ~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~-~  204 (225)
                                                     .++|.+++.+  |++...-..-.+. ...+..++. .+|.|||++.. .
T Consensus       286 -------------------------------~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~~~~  333 (354)
T 3a9g_A          286 -------------------------------GSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTSNRD  333 (354)
T ss_dssp             -------------------------------TTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEECTTS
T ss_pred             -------------------------------CCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEeCCC
Confidence                                           4577777665  5553211111121 234666665 47899999974 3


Q ss_pred             C---------eEEEEeCCC
Q 047259          205 K---------FVGKLPLNT  214 (225)
Q Consensus       205 ~---------~i~~~~~~~  214 (225)
                      +         +|+|+...+
T Consensus       334 G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          334 GRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             SSSCCCTTCSCEEEEEETT
T ss_pred             CCcCCCCCCCEEEEEecCC
Confidence            3         899987543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.33  E-value=5.8e-10  Score=93.18  Aligned_cols=157  Identities=10%  Similarity=0.036  Sum_probs=109.6

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC--c--------cccceeEEecCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG--F--------YFANGVALSKDEN   70 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~--------~~pnGi~~~~dg~   70 (225)
                      |.+++++++|+ +|+++..                 .+.|+.+|..++++......  .        ..|.+++++|||+
T Consensus        91 ~~~~~~s~dg~~l~v~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  153 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTV-----------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN  153 (353)
T ss_dssp             CCSEEEETTTTEEEEEETT-----------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT
T ss_pred             cceEEECCCCCEEEEEecC-----------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC
Confidence            67889999986 8888775                 56899999887776443322  1        1389999999999


Q ss_pred             EEEEEeC-CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhh
Q 047259           71 FVVVCES-WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPEL  148 (225)
Q Consensus        71 ~Lyv~~~-~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~  148 (225)
                      .||++.. ..++|+.+++++.   ............|.+++++++|+ +|++..                          
T Consensus       154 ~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--------------------------  204 (353)
T 3vgz_A          154 TVYISGIGKESVIWVVDGGNI---KLKTAIQNTGKMSTGLALDSEGKRLYTTNA--------------------------  204 (353)
T ss_dssp             EEEEEEESSSCEEEEEETTTT---EEEEEECCCCTTCCCCEEETTTTEEEEECT--------------------------
T ss_pred             EEEEEecCCCceEEEEcCCCC---ceEEEecCCCCccceEEECCCCCEEEEEcC--------------------------
Confidence            9999994 4678999998642   22222221233589999999997 566542                          


Q ss_pred             hhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          149 INLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       149 ~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                                 .+.|..+|.. |+.+..+..+.......+..++.  +++.||+++...+.|.++++.+.
T Consensus       205 -----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          205 -----------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             -----------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             -----------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence                       3467788875 77777776532211223444444  46789999999999999998653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.33  E-value=1.3e-10  Score=97.28  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=111.3

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |++++++++|+ +|+++.+.                .+.|+.+|..+++...... ....|++++++|||+.||++.. .
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~  205 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGK----------------ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-D  205 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESS----------------SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-T
T ss_pred             CceEEECCCCCEEEEEecCC----------------CceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-C
Confidence            57789999986 88887431                5789999998887766665 4566999999999999999986 6


Q ss_pred             CEEEEEEecCCCCCceeEEecc---CCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           80 FRCRRYWLKGPRQGRLESFIEH---LPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~---~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      +.|+.+++.+..  ....+...   ....|.+++++++|+ +|++...                                
T Consensus       206 ~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------------------------------  251 (353)
T 3vgz_A          206 GELITIDTADNK--ILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--------------------------------  251 (353)
T ss_dssp             SEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--------------------------------
T ss_pred             CeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--------------------------------
Confidence            799999986421  11111110   123467799999997 7887755                                


Q ss_pred             CCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          156 GNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       156 ~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                          .+.|..+|.+ |+++..+..+..      ..+.  +++++||+++..++.|.++++.+.
T Consensus       252 ----~~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          252 ----AAEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ----SSEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ----CCEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                5678889885 788877775432      1233  345679999999999999998653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.31  E-value=5.2e-11  Score=100.89  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=96.6

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCC-cEEEEEeCCCCeEEEEe------cCccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPH-GQLLKYDPELEETTVLH------EGFYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~-g~v~~~d~~~~~~~~~~------~~~~~pnGi~~~~dg~~Lyv   74 (225)
                      ||||+++++|++|+|++.                 . +.|++++++...+....      ....++|||+++|||+.|++
T Consensus       139 ~nDvavD~~GnaYVt~s~-----------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv  201 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFAL-----------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIA  201 (334)
T ss_dssp             EEEEEECTTSCEEEEEEE-----------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEE
T ss_pred             CceeEECCCCCEEEeCCC-----------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEE
Confidence            799999999999999886                 3 78999999843344332      12345889999999999999


Q ss_pred             EeCCCCEEEEEEecCCCCCceeEEec--c---CCCCCCce-EECCCCCE-EEEeecCCchhhhhhhcChhHHHHHHhhhh
Q 047259           75 CESWKFRCRRYWLKGPRQGRLESFIE--H---LPGGPDNI-NLAPDGSF-WVALIKMNQTGVRAIQSCPDKWKLLQAYPE  147 (225)
Q Consensus        75 ~~~~~~~I~~~~~~~~~~~~~~~~~~--~---~~g~Pd~i-~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~  147 (225)
                      +++ .++|++|+++..  ...++-..  +   ....|++| ....+|++ +|++..                        
T Consensus       202 ~~~-~g~L~~fD~~~p--v~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------------------------  254 (334)
T 2p9w_A          202 FGG-PRALTAFDVSKP--YAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------------------------  254 (334)
T ss_dssp             ESS-SSSEEEEECSSS--SCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------------------------
T ss_pred             EcC-CCeEEEEcCCCC--cceeecccccCCcccccCcccccccccCCEEEEEEcCC------------------------
Confidence            999 999999998732  11011111  1   12258996 66778987 777755                        


Q ss_pred             hhhhhccCCCCcceEEEEECCCC-cEEEEEEC-CCCCcccceeEEEE----eCCEEEEeeCC
Q 047259          148 LINLLIPLGNDAGARIVKVDTHG-KIIMDFND-PNATYISFVTSAVE----FEDNLYMASIQ  203 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~-p~g~~~~~~t~~~~----~~~~Lyv~~~~  203 (225)
                                  .+.++..+.|| +.-..+.. |..-...+++..+.    .+++||+.+..
T Consensus       255 ------------~~~~~l~S~DgW~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~  304 (334)
T 2p9w_A          255 ------------PYAISFRSWDNWKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF  304 (334)
T ss_dssp             ------------TEEEEEECSSTTSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred             ------------CCEEEEECCCCcceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence                        45677788887 11122211 21100234555544    57999999843

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.30  E-value=2.2e-10  Score=96.96  Aligned_cols=160  Identities=14%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcE--EEEEeCCCC----e-E-------EEEecCccccceeEEe
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQ--LLKYDPELE----E-T-------TVLHEGFYFANGVALS   66 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~--v~~~d~~~~----~-~-------~~~~~~~~~pnGi~~~   66 (225)
                      |+.++++|||+ ||+++..                 .+.  +|.++..++    + +       .........|.+++|+
T Consensus       157 ~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s  219 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN  219 (361)
T ss_dssp             EEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC
T ss_pred             ceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc
Confidence            36699999997 8998765                 344  455555433    2 2       2223455679999999


Q ss_pred             cCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC---CCCCceEECCCCC-EEEEeec-CCchhhhhhhcChhHHHH
Q 047259           67 KDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP---GGPDNINLAPDGS-FWVALIK-MNQTGVRAIQSCPDKWKL  141 (225)
Q Consensus        67 ~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~---g~Pd~i~~d~~G~-l~v~~~~-~~~~~~~~~~~~~~~r~~  141 (225)
                      |||++||++....+.|..|+++++.......+. ..+   ..|.+++++++|+ ||++... ..                
T Consensus       220 pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~spdg~~l~v~~~~~~~----------------  282 (361)
T 3scy_A          220 SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNAQGSGDIHLSPDGKYLYASNRLKAD----------------  282 (361)
T ss_dssp             TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCCCCEEEEEECTTSSEEEEEECSSSC----------------
T ss_pred             CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCCCCcccEEECCCCCEEEEECCCCCC----------------
Confidence            999999999988899999998743111111111 111   2366999999998 6676644 11                


Q ss_pred             HHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          142 LQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       142 ~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                                        .-.|+.+++ +|++...-..+.+.   .+..++.  ++..||+++..++.|.++.++.+.
T Consensus       283 ------------------~i~v~~~~~~~g~~~~~~~~~~g~---~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          283 ------------------GVAIFKVDETNGTLTKVGYQLTGI---HPRNFIITPNGKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             ------------------EEEEEEECTTTCCEEEEEEEECSS---CCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred             ------------------EEEEEEEcCCCCcEEEeeEecCCC---CCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence                              456777875 46643332222232   2344444  356799999899999997776443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.30  E-value=5.7e-11  Score=98.20  Aligned_cols=158  Identities=10%  Similarity=0.051  Sum_probs=111.9

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.+++++ .++||+++..                 .+.++.+|..+.++.....-. .|.|+.+++||++||+++ ++++
T Consensus        68 geGi~~~-g~~lyv~t~~-----------------~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~  127 (266)
T 2iwa_A           68 GEGLTLL-NEKLYQVVWL-----------------KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSI  127 (266)
T ss_dssp             EEEEEEE-TTEEEEEETT-----------------CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSE
T ss_pred             eEEEEEe-CCEEEEEEec-----------------CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCe
Confidence            4455665 3478888765                 679999998877655444322 588899999999999999 6899


Q ss_pred             EEEEEecCCCCCceeEEecc--CC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           82 CRRYWLKGPRQGRLESFIEH--LP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~--~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      |+.+|+++... ...+-...  .+ ..|+++.+. +|.+|++.+.                                   
T Consensus       128 l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------------------------  170 (266)
T 2iwa_A          128 LYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------------------------  170 (266)
T ss_dssp             EEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------------------------
T ss_pred             EEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCC-----------------------------------
Confidence            99999875311 11111111  11 247788888 7899998866                                   


Q ss_pred             cceEEEEECCC-CcEEEEEECCCC--------C-cccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCccc
Q 047259          159 AGARIVKVDTH-GKIIMDFNDPNA--------T-YISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       159 ~~~~V~~~d~~-G~~~~~~~~p~g--------~-~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                       ...|.++|+. |+++..+..+..        . ....+.+++..  +++|||+.-..++|.++++.+..+
T Consensus       171 -~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~~  240 (266)
T 2iwa_A          171 -TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVRH  240 (266)
T ss_dssp             -SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECCS
T ss_pred             -CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecccC
Confidence             4689999995 899999976310        0 01235666654  579999999999999999877653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.30  E-value=2.1e-10  Score=94.34  Aligned_cols=153  Identities=13%  Similarity=0.069  Sum_probs=111.4

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |.+++.++ ++.||++...                 .|.|.++|.+++++... .....+..||+++  ++.||++....
T Consensus        56 ftqGL~~~-~~~Ly~stG~-----------------~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~  115 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGH-----------------QGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTE  115 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETT-----------------TTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSS
T ss_pred             ccceEEEE-CCEEEEEcCC-----------------CCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccC
Confidence            55788887 5789999775                 56799999988875443 3444456778776  45699999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      +.++.||.++.  .....|.  .++.+-|++.|. ++||+++ +                                    
T Consensus       116 ~~v~V~D~~Tl--~~~~ti~--~~~eGwGLt~Dg-~~L~vSd-G------------------------------------  153 (268)
T 3nok_A          116 GLLFTWSGMPP--QRERTTR--YSGEGWGLCYWN-GKLVRSD-G------------------------------------  153 (268)
T ss_dssp             CEEEEEETTTT--EEEEEEE--CSSCCCCEEEET-TEEEEEC-S------------------------------------
T ss_pred             CEEEEEECCcC--cEEEEEe--CCCceeEEecCC-CEEEEEC-C------------------------------------
Confidence            99999998642  2222222  234456777764 4799988 4                                    


Q ss_pred             ceEEEEECCC-CcEEEEEECC-CCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          160 GARIVKVDTH-GKIIMDFNDP-NATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ...|..+|++ ++++..+... ++..+..++.+...+|+||+..+.++.|.+++..+.
T Consensus       154 s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          154 GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTC
T ss_pred             CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCC
Confidence            3489999997 6888887653 344455667777779999999999999999998654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.29  E-value=4.6e-10  Score=94.39  Aligned_cols=159  Identities=14%  Similarity=0.079  Sum_probs=108.1

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEEeCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE---GFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~---~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |..+++++||+||+++...               ..+.|+.|+.++++.+.+..   ....|.+|+++|||++||++...
T Consensus        42 p~~~a~spdg~l~~~~~~~---------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~  106 (347)
T 3hfq_A           42 PTYLALSAKDCLYSVDKED---------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH  106 (347)
T ss_dssp             CCCEEECTTCEEEEEEEET---------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred             cceEEEccCCeEEEEEecC---------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence            6789999999999886520               15678888876676655432   46789999999999999999988


Q ss_pred             CCEEEEEEecCCCCCceeEEec--cCC---------CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhh
Q 047259           79 KFRCRRYWLKGPRQGRLESFIE--HLP---------GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPE  147 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~--~~~---------g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~  147 (225)
                      .+.|..++++..  +..+....  ...         ..|..++++++|++|+++....                      
T Consensus       107 ~~~v~v~~~~~~--g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~----------------------  162 (347)
T 3hfq_A          107 KGTAEVMKIAAD--GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD----------------------  162 (347)
T ss_dssp             TTEEEEEEECTT--SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT----------------------
T ss_pred             CCEEEEEEeCCC--CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC----------------------
Confidence            899999998531  12222211  111         1245799999999988876621                      


Q ss_pred             hhhhhccCCCCcceEEEEECCCCcEEEE--EECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          148 LINLLIPLGNDAGARIVKVDTHGKIIMD--FNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~V~~~d~~G~~~~~--~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                                  .-.++.++++|++...  +..+.+.   .+..++.  ++..||+++...+.|.+++++.
T Consensus       163 ------------~v~~~~~~~~g~~~~~~~~~~~~g~---~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          163 ------------KVYVYNVSDAGQLSEQSVLTMEAGF---GPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             ------------EEEEEEECTTSCEEEEEEEECCTTC---CEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ------------EEEEEEECCCCcEEEeeeEEcCCCC---CCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                        3455666666765433  3443342   3444544  3456999999999998888774

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.28  E-value=1.7e-10  Score=99.12  Aligned_cols=181  Identities=9%  Similarity=0.096  Sum_probs=109.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC--CCeEEEE-ecC------ccccceeEEec--CCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE--LEETTVL-HEG------FYFANGVALSK--DEN   70 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~-~~~------~~~pnGi~~~~--dg~   70 (225)
                      |+|++++++|.+|++......|...+     .....|+|+++|++  +++.+.+ ..+      .-.|.||.+.+  |++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~-----~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~  126 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSF-----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT  126 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC----------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred             cceeEEcCCCeEEEEeccccCCCccc-----CCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence            78999999999999974211122111     11358999999986  3344443 222      24899999977  354


Q ss_pred             -EEEEEeCC--CCEEEEEEecCCCCCceeEEecc---C-CCCCCceEECCCCCEEEEeec-CCchhhhhhhcChhHHHHH
Q 047259           71 -FVVVCESW--KFRCRRYWLKGPRQGRLESFIEH---L-PGGPDNINLAPDGSFWVALIK-MNQTGVRAIQSCPDKWKLL  142 (225)
Q Consensus        71 -~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~---~-~g~Pd~i~~d~~G~l~v~~~~-~~~~~~~~~~~~~~~r~~~  142 (225)
                       +|||++..  ..+|-.|+.+..  +...+++..   . -..|++++++++|++|+++.- +..         +.++. .
T Consensus       127 ~~L~Vvnh~~~~s~ielf~~d~~--~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd---------~~~~~-~  194 (355)
T 3sre_A          127 VYLLVVNHPGSSSTVEVFKFQEE--EKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFID---------PYLKS-W  194 (355)
T ss_dssp             EEEEEEECSTTCCEEEEEEEETT--TTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSS---------HHHHH-H
T ss_pred             EEEEEEECCCCCCeEEEEEEECC--CCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCC---------ccccc-c
Confidence             69999877  345444444321  122233322   1 236899999999999999753 221         11111 0


Q ss_pred             HhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCc
Q 047259          143 QAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       143 ~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .       .+. ..+  .+.|++++++ ++. .+..  +  +..+++++..  +++|||++....+|.+|++++.
T Consensus       195 e-------~~~-~~~--~g~vyr~d~~-~~~-~~~~--~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          195 E-------MHL-GLA--WSFVTYYSPN-DVR-VVAE--G--FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             H-------HHT-TCC--CEEEEEECTT-CCE-EEEE--E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             h-------hhc-cCC--ccEEEEEECC-eEE-Eeec--C--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence            0       000 122  7899999984 443 3322  2  3446666653  5799999999999999998753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.23  E-value=3.8e-10  Score=91.86  Aligned_cols=163  Identities=13%  Similarity=0.131  Sum_probs=107.3

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ..++++. .++||..+..                 .+.++.||.++.++.......  +.|..+++|++.||+++ ++++
T Consensus        67 geGi~~~-~~~ly~ltw~-----------------~~~v~v~D~~tl~~~~ti~~~--~~Gwglt~dg~~L~vSd-gs~~  125 (243)
T 3mbr_X           67 GAGIVAW-RDRLIQLTWR-----------------NHEGFVYDLATLTPRARFRYP--GEGWALTSDDSHLYMSD-GTAV  125 (243)
T ss_dssp             EEEEEEE-TTEEEEEESS-----------------SSEEEEEETTTTEEEEEEECS--SCCCEEEECSSCEEEEC-SSSE
T ss_pred             eeEEEEe-CCEEEEEEee-----------------CCEEEEEECCcCcEEEEEeCC--CCceEEeeCCCEEEEEC-CCCe
Confidence            3455555 3578887654                 679999999877655544332  35666667888899999 5899


Q ss_pred             EEEEEecCCC-CCceeEEeccCC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           82 CRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        82 I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      |+.+|+++.. .+..++-....+ ..++.+... +|+||+..+.                                    
T Consensus       126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~------------------------------------  168 (243)
T 3mbr_X          126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL------------------------------------  168 (243)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------------------------------------
T ss_pred             EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC------------------------------------
Confidence            9999987531 111111110011 234556655 7899988876                                    


Q ss_pred             ceEEEEECCC-CcEEEEEECCCC---------CcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccccCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNA---------TYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAELAPK  222 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g---------~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~~~~~  222 (225)
                      ...|.++|+. |+++..+..+.-         .....+++++.+  +++|||+.-.-+++..+++.....+++-|
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~~~~~~~~~  243 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTPLPHAAAGK  243 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECCCCC-----
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEecCCccccCC
Confidence            3489999996 999999874310         012245666654  69999999999999999998877666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.23  E-value=2.3e-09  Score=89.07  Aligned_cols=163  Identities=14%  Similarity=0.161  Sum_probs=108.5

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCC-cEEEEEeCCCCeE----EEEecCccccceeEEecCCCEEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPH-GQLLKYDPELEET----TVLHEGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~-g~v~~~d~~~~~~----~~~~~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      |+++++++||+ +|+++....               . -.+|.++.+ +.+    .........|.+++++|||++||++
T Consensus       130 ~~~~~~spdg~~l~~~~~~~~---------------~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          130 AVGIAISPNGNGLILIDRSSA---------------NTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             EEEEEECTTSSCEEEEEETTT---------------TEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             ccceEECCCCCEEEEEecCCC---------------ceEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            57899999996 888876511               2 245555543 333    2223445679999999999999999


Q ss_pred             eCCCCEEEEEEecCCCC-CceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           76 ESWKFRCRRYWLKGPRQ-GRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~-~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      ....+.|..+++++... .....+.  ....|.+++++++|+ +|++...                              
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~------------------------------  241 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES------------------------------  241 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS------------------------------
T ss_pred             eCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC------------------------------
Confidence            99999999999875322 1022221  345789999999998 7777654                              


Q ss_pred             cCCCCcceEEEEECCC-CcE--EEEEECC---CCCcccceeEEE--EeCCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          154 PLGNDAGARIVKVDTH-GKI--IMDFNDP---NATYISFVTSAV--EFEDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~~-G~~--~~~~~~p---~g~~~~~~t~~~--~~~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                            .+.|..+|.+ |++  +..+...   ..........++  +++..||+++..++.|.++++.+....
T Consensus       242 ------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          242 ------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             ------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence                  5678888876 666  3333321   011111112233  356789999999999999999876543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.20  E-value=8.3e-10  Score=90.68  Aligned_cols=155  Identities=10%  Similarity=0.069  Sum_probs=106.2

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ..+++++ .++||+.+..                 .+.++.||.++.++.....-.  +.|..+++|++.||+++ ++++
T Consensus        89 geGit~~-g~~ly~ltw~-----------------~~~v~v~D~~t~~~~~ti~~~--~eG~glt~dg~~L~~Sd-Gs~~  147 (262)
T 3nol_A           89 GEGISDW-KDKIVGLTWK-----------------NGLGFVWNIRNLRQVRSFNYD--GEGWGLTHNDQYLIMSD-GTPV  147 (262)
T ss_dssp             EEEEEEE-TTEEEEEESS-----------------SSEEEEEETTTCCEEEEEECS--SCCCCEEECSSCEEECC-SSSE
T ss_pred             eeEEEEe-CCEEEEEEee-----------------CCEEEEEECccCcEEEEEECC--CCceEEecCCCEEEEEC-CCCe
Confidence            3456665 3478888664                 679999999877655444332  36677777888999999 4789


Q ss_pred             EEEEEecCCC-CCceeEEeccCC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           82 CRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        82 I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      |+.+|+++.. .+...+-....+ ..++.+.+. +|+||++.+.                                    
T Consensus       148 i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~------------------------------------  190 (262)
T 3nol_A          148 LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ------------------------------------  190 (262)
T ss_dssp             EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------------------------------------
T ss_pred             EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc------------------------------------
Confidence            9999987531 111111110111 234557776 7899998877                                    


Q ss_pred             ceEEEEECCC-CcEEEEEECCCCC--------cccceeEEEEe--CCEEEEeeCCCCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNAT--------YISFVTSAVEF--EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~--------~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      ...|.++|+. |+++..+..+.-.        ....+++++.+  +++|||+.-.-+++..+++..
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~~  256 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQ  256 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEec
Confidence            4589999996 9999999874210        01245667754  699999999999999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.17  E-value=8.8e-10  Score=90.65  Aligned_cols=154  Identities=10%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ..+++++. ++||+.+..                 .+.++.||.++.++......  .+.|..+++|++.||+++ ++++
T Consensus        98 geGit~~g-~~Ly~ltw~-----------------~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~  156 (268)
T 3nok_A           98 AEGLASDG-ERLYQLTWT-----------------EGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTM  156 (268)
T ss_dssp             EEEEEECS-SCEEEEESS-----------------SCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSE
T ss_pred             eeEEEEeC-CEEEEEEcc-----------------CCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCE
Confidence            45566653 479998664                 67999999987776554443  245666667788999999 5899


Q ss_pred             EEEEEecCCC-CCceeEEeccCC-CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           82 CRRYWLKGPR-QGRLESFIEHLP-GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        82 I~~~~~~~~~-~~~~~~~~~~~~-g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      |+.+|+++.. .....+-....+ ..++.+.+. +|+||++.+.                                    
T Consensus       157 l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~------------------------------------  199 (268)
T 3nok_A          157 LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH------------------------------------  199 (268)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------------------------------------
T ss_pred             EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC------------------------------------
Confidence            9999987531 111111110011 134667776 7899998876                                    


Q ss_pred             ceEEEEECCC-CcEEEEEECCC---------CCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPN---------ATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~---------g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      ...|.++|++ |+++..+....         ......+++++.+  +++|||+.-.-++++.++++
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~~  265 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRLD  265 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEEE
Confidence            4589999996 99999987531         0012245667754  68999999999999998873

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.17  E-value=1.6e-09  Score=90.07  Aligned_cols=158  Identities=18%  Similarity=0.139  Sum_probs=108.1

Q ss_pred             CCc-EEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TND-VIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pnd-v~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      |.. +++++||+..++....              ...+.|+.+|..+++..........|++++++|||++||+++...+
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  150 (331)
T 3u4y_A           85 SMADVDITPDDQFAVTVTGL--------------NHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSA  150 (331)
T ss_dssp             CCCCEEECTTSSEEEECCCS--------------SSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTT
T ss_pred             CccceEECCCCCEEEEecCC--------------CCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCC
Confidence            345 8888888744443320              1123899999987877666666678999999999999999998877


Q ss_pred             E-EEEEEecCC-CCCce-eEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           81 R-CRRYWLKGP-RQGRL-ESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        81 ~-I~~~~~~~~-~~~~~-~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      . |..|+++.. ..... .... .....|.+++++++|+ +|++...                                 
T Consensus       151 ~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~---------------------------------  196 (331)
T 3u4y_A          151 NTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI---------------------------------  196 (331)
T ss_dssp             TEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT---------------------------------
T ss_pred             ceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC---------------------------------
Confidence            8 888888642 11111 1111 1234689999999998 8888765                                 


Q ss_pred             CCcceEEEEECCC-CcE---EEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTH-GKI---IMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~-G~~---~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                         .+.|..+|.+ |+.   +..+...  .   .+..++.  ++..||+++...+.|.++++.+.
T Consensus       197 ---~~~v~v~d~~~~~~~~~~~~~~~~--~---~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          197 ---GNSIGILETQNPENITLLNAVGTN--N---LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             ---TTEEEEEECSSTTSCEEEEEEECS--S---CCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             ---CCeEEEEECCCCcccceeeeccCC--C---CCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence               4567777764 676   6666542  1   2333443  35669999988889999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.16  E-value=2.8e-09  Score=90.80  Aligned_cols=164  Identities=12%  Similarity=0.066  Sum_probs=103.8

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCeEEEEe--c---CccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEETTVLH--E---GFYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~--~---~~~~pnGi~~~~dg~~Lyv   74 (225)
                      |++++++|||+ ||+++.+                 .+.|+.|+.+ +|+++.+.  .   ....|.+++|+|||++||+
T Consensus       147 ~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          147 IHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             EEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             ceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence            67889999996 7777764                 4577777765 57665431  1   2467999999999999999


Q ss_pred             EeCCCCEEEEEEecCCCCCcee----EEeccCC----C---------CCCceE-ECCCCC-EEEEeecCCchhhhhhhcC
Q 047259           75 CESWKFRCRRYWLKGPRQGRLE----SFIEHLP----G---------GPDNIN-LAPDGS-FWVALIKMNQTGVRAIQSC  135 (225)
Q Consensus        75 ~~~~~~~I~~~~~~~~~~~~~~----~~~~~~~----g---------~Pd~i~-~d~~G~-l~v~~~~~~~~~~~~~~~~  135 (225)
                      +....+.|..|+++.. .+...    .+. ..+    +         .|.+++ +++||+ ||++..+....        
T Consensus       210 ~~~~~~~v~v~~~~~~-~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~--------  279 (365)
T 1jof_A          210 LMEAGNRICEYVIDPA-THMPVYTHHSFP-LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE--------  279 (365)
T ss_dssp             EETTTTEEEEEEECTT-TCCEEEEEEEEE-SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT--------
T ss_pred             EECCCCeEEEEEEeCC-CCcEEEccceEE-cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC--------
Confidence            9988888888877521 12221    111 121    1         367899 999997 67777552100        


Q ss_pred             hhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEE---EECCCCCcccceeEEEE---eCCEEEEeeCCCCeEEE
Q 047259          136 PDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMD---FNDPNATYISFVTSAVE---FEDNLYMASIQSKFVGK  209 (225)
Q Consensus       136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~---~~~p~g~~~~~~t~~~~---~~~~Lyv~~~~~~~i~~  209 (225)
                                         ...  .-.|+.++++|++...   +..+... .. .-.+.+   ++++||+++..++.|.+
T Consensus       280 -------------------~~~--~i~v~~~~~~g~~~~~~~~~~~~~~~-~~-~~a~sp~~~dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          280 -------------------LQG--YIAGFKLRDCGSIEKQLFLSPTPTSG-GH-SNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             -------------------SCC--EEEEEEECTTSCEEEEEEEEECSSCC-TT-CCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             -------------------CCC--eEEEEEECCCCCEEEeeeeeecCCCC-cc-cceecCCCcCCCEEEEEEcCCCeEEE
Confidence                               000  2346666667887543   3222111 11 112335   57899999988899988


Q ss_pred             EeCCCc
Q 047259          210 LPLNTP  215 (225)
Q Consensus       210 ~~~~~~  215 (225)
                      ++++..
T Consensus       337 ~~~~~~  342 (365)
T 1jof_A          337 YRWKDE  342 (365)
T ss_dssp             EEEETT
T ss_pred             EEEchh
Confidence            877654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.14  E-value=3.3e-09  Score=87.74  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=104.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC-
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESW-   78 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~-   78 (225)
                      ++++++.++|+|+++.                   .+.|+.+|+ +|+..-....  ....+++.+.+||+ ++|+++. 
T Consensus        39 ~~~~~~~pdG~ilvs~-------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~   97 (276)
T 3no2_A           39 CNSVAATKAGEILFSY-------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGN-ALVAWCGH   97 (276)
T ss_dssp             CCEEEECTTSCEEEEC-------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSC-EEEEEEST
T ss_pred             CcCeEECCCCCEEEeC-------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCC-EEEEecCC
Confidence            5788889999988842                   246888888 4653322221  23456788999998 7778777 


Q ss_pred             CCEEEEEEecCCCCCceeEEeccC---CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEHL---PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~~---~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      .++|+.++.++..+-... +....   ...|.+++++++|+++++...                                
T Consensus        98 ~~~v~~vd~~Gk~l~~~~-~~~~~~~~~~~~~~v~~~~~G~~lv~~~~--------------------------------  144 (276)
T 3no2_A           98 PSTILEVNMKGEVLSKTE-FETGIERPHAQFRQINKNKKGNYLVPLFA--------------------------------  144 (276)
T ss_dssp             TEEEEEECTTSCEEEEEE-ECCSCSSGGGSCSCCEECTTSCEEEEETT--------------------------------
T ss_pred             CCEEEEEeCCCCEEEEEe-ccCCCCcccccccCceECCCCCEEEEecC--------------------------------
Confidence            889999987653111111 11111   124778899999999998876                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                          .+.|..+|++|+++..+..+. . .  .+.....+|.++|++..+++|..++..
T Consensus       145 ----~~~v~~~d~~G~~~w~~~~~~-~-~--~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          145 ----TSEVREIAPNGQLLNSVKLSG-T-P--FSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             ----TTEEEEECTTSCEEEEEECSS-C-C--CEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             ----CCEEEEECCCCCEEEEEECCC-C-c--cceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence                568999999999999998742 2 1  122233578899999888899999887

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=4.6e-09  Score=88.50  Aligned_cols=152  Identities=15%  Similarity=0.151  Sum_probs=105.4

Q ss_pred             CCcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +++++++++ +.+|+++..                 .+.|+++|.++++.+... ....+.+|++++||+ +|++.  .+
T Consensus        51 ~egp~~~~~~~~l~~~d~~-----------------~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~-l~v~~--~~  109 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNIL-----------------ERELHELHLASGRKTVHA-LPFMGSALAKISDSK-QLIAS--DD  109 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGG-----------------GTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTE-EEEEE--TT
T ss_pred             CcCCeEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCe-EEEEE--CC
Confidence            467888886 679999775                 568999999877766543 235689999999987 77775  34


Q ss_pred             EEEEEEecCCCCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      .|++++++++   ..+.+.....    ..+..+++|++|++|++......                            ..
T Consensus       110 gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~----------------------------~~  158 (326)
T 2ghs_A          110 GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA----------------------------ET  158 (326)
T ss_dssp             EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC----------------------------CT
T ss_pred             CEEEEECCCC---cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC----------------------------CC
Confidence            6999998643   3333332111    24678999999999998765210                            01


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~  213 (225)
                        ..+.|++++ +|++......     ...+..++..  ++.||+++...+.|.+++++
T Consensus       159 --~~~~l~~~~-~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          159 --GAGSIYHVA-KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             --TCEEEEEEE-TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             --CceEEEEEe-CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence              157899999 7876543321     1234455543  45799999989999999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.12  E-value=2.1e-09  Score=94.56  Aligned_cols=148  Identities=9%  Similarity=0.040  Sum_probs=98.0

Q ss_pred             CCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------C
Q 047259            9 SDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------W   78 (225)
Q Consensus         9 ~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------~   78 (225)
                      +++ ++|+++....            .. .+.|..+|..++++...+.-...| ||+++|||++|||+++         .
T Consensus        82 ~~~~~vyV~n~~~~------------~~-~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~  147 (426)
T 3c75_H           82 PDARRVYIQDPAHF------------AA-ITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKR  147 (426)
T ss_dssp             CCTTEEEEEECTTT------------CS-SEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             CCCCEEEEECCCcC------------CC-CCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCC
Confidence            355 6999988511            01 189999999888877666666789 9999999999999996         4


Q ss_pred             CCEEEEEEecCCCCCceeEEecc-----CCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           79 KFRCRRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                      .+.|..||..+...- .++-...     ....|.++++++||+ +||+....                            
T Consensus       148 ~~~VsviD~~t~~vv-~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~----------------------------  198 (426)
T 3c75_H          148 TDYVEVFDPVTFLPI-ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP----------------------------  198 (426)
T ss_dssp             EEEEEEECTTTCCEE-EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS----------------------------
T ss_pred             CCEEEEEECCCCcEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEecCC----------------------------
Confidence            578999988653111 1111110     023699999999996 88887541                            


Q ss_pred             ccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeC
Q 047259          153 IPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~  212 (225)
                             .+.|.++|.. ++++..+..+..      ..+.+.+.+.|++...++++.++.+
T Consensus       199 -------~~~VsVID~~t~kvv~~I~v~g~------~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          199 -------APAVGVVDLEGKTFDRMLDVPDC------YHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             -------SCEEEEEETTTTEEEEEEECCSE------EEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             -------CCeEEEEECCCCeEEEEEEcCCc------eeeccCCCcEEEEEcCCCCEEEEEC
Confidence                   4578999986 788888886432      1122333345555555555555544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.10  E-value=6.1e-09  Score=86.29  Aligned_cols=162  Identities=11%  Similarity=0.134  Sum_probs=100.7

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC---eEEEEecCccccceeEEecCCCEEEEEeC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE---ETTVLHEGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~---~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      |.++++.++|+ ||++...                 .+.|..||..++   +..........+++++++|||+.||++..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  148 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  148 (343)
T ss_dssp             CSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             CcEEEEcCCCCEEEEEecC-----------------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC
Confidence            67788888886 7777654                 456666665223   23333455667999999999999999998


Q ss_pred             CCCEEEEEEecC-CCCCcee--EEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhc
Q 047259           78 WKFRCRRYWLKG-PRQGRLE--SFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLI  153 (225)
Q Consensus        78 ~~~~I~~~~~~~-~~~~~~~--~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  153 (225)
                      ..+.|..|+++. .......  .+.......|.+++++++|+ +|++.....                            
T Consensus       149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~----------------------------  200 (343)
T 1ri6_A          149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS----------------------------  200 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT----------------------------
T ss_pred             CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC----------------------------
Confidence            889999999874 2111111  11111233688999999998 777764410                            


Q ss_pred             cCCCCcceEEEEECC-CCcE--EEEEE-CCCCC-cccceeEEEEe--CCEEEEeeCCCCeEEEEeCCC
Q 047259          154 PLGNDAGARIVKVDT-HGKI--IMDFN-DPNAT-YISFVTSAVEF--EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       154 ~~~~~~~~~V~~~d~-~G~~--~~~~~-~p~g~-~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                            .-.++.++. .|++  ...+. .+.+. ....+..++..  +..||++....+.|.++++..
T Consensus       201 ------~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          201 ------SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             ------EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ------EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence                  223344433 3443  23333 23220 01234445443  568999988889999998873

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.09  E-value=1.5e-08  Score=83.72  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=106.2

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE-EEE-e-----cCccccceeEEecCCCEEEEEe
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET-TVL-H-----EGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~-~-----~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      ++.+.+||++++++...                .++|+.+|++ |+. ... .     .....|.+++.+++|+ ++++.
T Consensus        81 ~~~~~~dG~~lv~~~~~----------------~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~  142 (276)
T 3no2_A           81 TARILPDGNALVAWCGH----------------PSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPL  142 (276)
T ss_dssp             EEEECTTSCEEEEEEST----------------TEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEE
T ss_pred             ccEECCCCCEEEEecCC----------------CCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCC-EEEEe
Confidence            45566777777775531                5688888885 543 222 1     1224678899999998 77888


Q ss_pred             CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      ..+++|..|+.+|.    . ++.-..++.|.+..+.++|+++++...                                 
T Consensus       143 ~~~~~v~~~d~~G~----~-~w~~~~~~~~~~~~~~~~g~~~v~~~~---------------------------------  184 (276)
T 3no2_A          143 FATSEVREIAPNGQ----L-LNSVKLSGTPFSSAFLDNGDCLVACGD---------------------------------  184 (276)
T ss_dssp             TTTTEEEEECTTSC----E-EEEEECSSCCCEEEECTTSCEEEECBT---------------------------------
T ss_pred             cCCCEEEEECCCCC----E-EEEEECCCCccceeEcCCCCEEEEeCC---------------------------------
Confidence            89999999998752    1 222123456889999999999998876                                 


Q ss_pred             CCcceEEEEECCC-CcEEEEEECC--CCCcccceeEEEE-eCCEEEEeeCC----------CCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTH-GKIIMDFNDP--NATYISFVTSAVE-FEDNLYMASIQ----------SKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~-G~~~~~~~~p--~g~~~~~~t~~~~-~~~~Lyv~~~~----------~~~i~~~~~~~~  215 (225)
                         .++|..+|++ |+++..+...  .+..+..++.+.. .+|.+|++++.          ..++..++.+++
T Consensus       185 ---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~  254 (276)
T 3no2_A          185 ---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGK  254 (276)
T ss_dssp             ---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSB
T ss_pred             ---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCC
Confidence               5689999999 9999998742  2222444666654 58999999973          345666655544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.09  E-value=8.6e-09  Score=88.23  Aligned_cols=163  Identities=9%  Similarity=0.039  Sum_probs=104.4

Q ss_pred             CCcEEEcC----CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--------eEEEEec-----CccccceeE
Q 047259            2 TNDVIEAS----DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--------ETTVLHE-----GFYFANGVA   64 (225)
Q Consensus         2 pndv~~~~----dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~-----~~~~pnGi~   64 (225)
                      +++|+++|    +|.||++.+..               ..++|+++..+.+        +.+.+..     ...+.+.|+
T Consensus        82 llGia~~Pdf~~~g~lYv~yt~~---------------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~  146 (347)
T 3das_A           82 LLGIALSPDYASDHMVYAYFTSA---------------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIA  146 (347)
T ss_dssp             EEEEEECTTHHHHCEEEEEEECS---------------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEE
T ss_pred             ceeeEeccccccCCEEEEEEecC---------------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcccc
Confidence            46899998    48899986531               1467888875431        2333332     233567799


Q ss_pred             EecCCCEEEEEe-------------CCCCEEEEEEecCCC-----CCceeEEeccCCCCCCceEECCCCCEEEEeecCCc
Q 047259           65 LSKDENFVVVCE-------------SWKFRCRRYWLKGPR-----QGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQ  126 (225)
Q Consensus        65 ~~~dg~~Lyv~~-------------~~~~~I~~~~~~~~~-----~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~  126 (225)
                      ++|||. |||+.             ...++|+|+++++..     ....+++..++ ..|.+|++|++|+||+++++...
T Consensus       147 fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~  224 (347)
T 3das_A          147 FGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDT  224 (347)
T ss_dssp             ECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSS
T ss_pred             CCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCC
Confidence            999996 99995             246899999988631     11235555322 35999999999999999998531


Q ss_pred             hhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC---------------CCcEEEEEECCCCCcccceeEEE
Q 047259          127 TGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT---------------HGKIIMDFNDPNATYISFVTSAV  191 (225)
Q Consensus       127 ~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~---------------~G~~~~~~~~p~g~~~~~~t~~~  191 (225)
                                                       ...|-++.+               .+.+...+..+.+  ...+++++
T Consensus       225 ---------------------------------~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ap~G~~  269 (347)
T 3das_A          225 ---------------------------------WDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--EASPSGIA  269 (347)
T ss_dssp             ---------------------------------CEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--TCCEEEEE
T ss_pred             ---------------------------------CceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--CCCCcceE
Confidence                                             111222211               1111111111111  12577888


Q ss_pred             EeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          192 EFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       192 ~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      +.++.+|++.+...+|.++++++..
T Consensus       270 ~~~g~~~~~~l~~~~l~~v~~~~~~  294 (347)
T 3das_A          270 YAEGSVWMAGLRGERLWRIPLKGTA  294 (347)
T ss_dssp             EETTEEEEEESTTCSEEEEEEETTE
T ss_pred             EEcCceeeccccCCEEEEEEecCCc
Confidence            8899999999999999999987653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.08  E-value=3.6e-09  Score=91.82  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             EcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC--------
Q 047259            7 EASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES--------   77 (225)
Q Consensus         7 ~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~--------   77 (225)
                      ..|+| ++|++|... +            ...+.|+.+|..++++...+.....|. |+++|||++|||+++        
T Consensus        40 ~~pd~~~vyV~~~~~-~------------~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G  105 (386)
T 3sjl_D           40 PAPDARRVYVNDPAH-F------------AAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARG  105 (386)
T ss_dssp             CCCCTTEEEEEECGG-G------------CSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEE
T ss_pred             cCCCCCEEEEEcCcc-c------------CCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccC
Confidence            45677 699999851 1            125799999998888776666566785 999999999999985        


Q ss_pred             -CCCEEEEEEecCCCCCceeEEecc-----CCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhh
Q 047259           78 -WKFRCRRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELIN  150 (225)
Q Consensus        78 -~~~~I~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  150 (225)
                       ..+.|..||..+...- .++-...     ....|.++++++||+ +||++...                          
T Consensus       106 ~~~~~VsviD~~t~~v~-~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~--------------------------  158 (386)
T 3sjl_D          106 ERTDYVEVFDPVTLLPT-ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP--------------------------  158 (386)
T ss_dssp             EEEEEEEEECTTTCCEE-EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--------------------------
T ss_pred             CCCCEEEEEECCCCeEE-EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCC--------------------------
Confidence             3567999988653111 1111110     012699999999997 79987541                          


Q ss_pred             hhccCCCCcceEEEEECCC-CcEEEEEECCC
Q 047259          151 LLIPLGNDAGARIVKVDTH-GKIIMDFNDPN  180 (225)
Q Consensus       151 ~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~  180 (225)
                               .+.|..+|.. ++++..+..|.
T Consensus       159 ---------~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          159 ---------APAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             ---------SCEEEEEETTTTEEEEEEECCS
T ss_pred             ---------CCeEEEEECCCCcEEEEEECCC
Confidence                     4578889886 78888887653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.06  E-value=3.7e-08  Score=81.51  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=101.4

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEE--EeCCCCeEEEEe--cCccccceeEEecCCCEEEEEe
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLK--YDPELEETTVLH--EGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~--~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      |+.++++++|+ ||++...                 .+.|..  ++..+++.+.+.  .....|.+++++|||+.||++.
T Consensus        40 ~~~~~~spdg~~l~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  102 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRP-----------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGS  102 (343)
T ss_dssp             CCCEEECTTSSEEEEEETT-----------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred             CceEEECCCCCEEEEeecC-----------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEe
Confidence            56788899887 7777654                 245555  443356655432  2234899999999999999999


Q ss_pred             CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      ...+.|..|+++.+......... .....|..++++++|+ +|++.....                              
T Consensus       103 ~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~------------------------------  151 (343)
T 1ri6_A          103 YNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQD------------------------------  151 (343)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGT------------------------------
T ss_pred             cCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCC------------------------------
Confidence            88889999998421111111111 1233588999999997 777764410                              


Q ss_pred             CCCcceEEEEECCCCcEEE----EEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          156 GNDAGARIVKVDTHGKIIM----DFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~----~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                          .-.++.++.+|++..    .+..+.+.   .+..++.  ++..||+++...+.|.+++++.
T Consensus       152 ----~v~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          152 ----RICLFTVSDDGHLVAQDPAEVTTVEGA---GPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             ----EEEEEEECTTSCEEEEEEEEEECSTTC---CEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             ----EEEEEEecCCCceeeecccccccCCCC---CcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                234445555576643    33433332   3444444  3567999998899999999865

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.05  E-value=3e-08  Score=84.18  Aligned_cols=152  Identities=15%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      ++.+++.++|+ ||++...                 .+.|..+|..+++..........+++++++||++.||++....+
T Consensus        34 ~~~~~~s~dg~~l~~~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~   96 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAH-----------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASS   96 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGG-----------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             cceEEECCCCCEEEEECCC-----------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCC
Confidence            35677888885 6676543                 57899999887887766665568999999999999999998889


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      .|..+++++.   ....... ....+.+++++++|+ +|++...                                    
T Consensus        97 ~v~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~------------------------------------  136 (391)
T 1l0q_A           97 TLSVIDTTSN---TVAGTVK-TGKSPLGLALSPDGKKLYVTNNG------------------------------------  136 (391)
T ss_dssp             EEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEETT------------------------------------
T ss_pred             EEEEEECCCC---eEEEEEe-CCCCcceEEECCCCCEEEEEeCC------------------------------------
Confidence            9999998752   2222221 334578999999997 6677654                                    


Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .+.|..+|.. |+.+..+....     .+..+..  ++..||++....+.|.++++.+.
T Consensus       137 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~  190 (391)
T 1l0q_A          137 DKTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            4577778864 67777776522     2344444  35688899888889999988654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.03  E-value=2.5e-08  Score=86.02  Aligned_cols=130  Identities=7%  Similarity=-0.069  Sum_probs=86.1

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCEEEEEEecCCCCCceeEE-ec-c----CC
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------WKFRCRRYWLKGPRQGRLESF-IE-H----LP  103 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------~~~~I~~~~~~~~~~~~~~~~-~~-~----~~  103 (225)
                      .|+.||..++++.........| +|+++|||++|||+++         ..+.|..|+.++.  .....+ .. .    ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccC
Confidence            8899999888776555555678 9999999999999985         3578999998642  111111 10 0    01


Q ss_pred             CCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEE-EECCCC
Q 047259          104 GGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMD-FNDPNA  181 (225)
Q Consensus       104 g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~-~~~p~g  181 (225)
                      ..|.++++++||+ ||++....                                   ...|..+|..++++.. +..|.+
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~-----------------------------------~~~v~viD~t~~~~~~~i~~~~~  169 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAA-----------------------------------GPAVGLVVQGGSSDDQLLSSPTC  169 (373)
T ss_pred             CCccceEECCCCCEEEEEecCC-----------------------------------CCeEEEEECCCCEEeEEcCCCce
Confidence            3589999999997 78876541                                   2467777833777777 655422


Q ss_pred             CcccceeEEEEeCCEEEEeeCCCCeEEEEeC
Q 047259          182 TYISFVTSAVEFEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       182 ~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~  212 (225)
                            ..+.+.+++.|++...++.+.+++.
T Consensus       170 ------~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          170 ------YHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             ------EEEEeCCCceEEEEcCCCCEEEEEC
Confidence                  1123445566676666666666666

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.03  E-value=5.4e-09  Score=89.56  Aligned_cols=170  Identities=12%  Similarity=0.090  Sum_probs=104.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC-------------eEEEEecCccccceeEEec
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE-------------ETTVLHEGFYFANGVALSK   67 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~pnGi~~~~   67 (225)
                      ++++|++++||.||++......  ....++  .....|+|++++++..             ..++...++..|.||+++|
T Consensus       131 ~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~--~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~  206 (353)
T 2g8s_A          131 FGGRLVFDGKGYLFIALGENNQ--RPTAQD--LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNP  206 (353)
T ss_dssp             CCCCEEECSSSEEEEEECCTTC--GGGGGC--TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEET
T ss_pred             cCccEEECCCCcEEEEECCCCC--CCccCC--CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEEC
Confidence            4789999999999999754111  111111  1244789999998732             2455667889999999999


Q ss_pred             CCCEEEEEeCCCC---EEEEEEecCCCCCce---------------------eEEe----ccC-CCCCCceEECC-----
Q 047259           68 DENFVVVCESWKF---RCRRYWLKGPRQGRL---------------------ESFI----EHL-PGGPDNINLAP-----  113 (225)
Q Consensus        68 dg~~Lyv~~~~~~---~I~~~~~~~~~~~~~---------------------~~~~----~~~-~g~Pd~i~~d~-----  113 (225)
                      +...||+++.+.+   +|.++...++ -+-.                     ..+.    ... ...|.|+++..     
T Consensus       207 ~~g~l~~~d~g~~~~dei~~i~~G~n-yGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp  285 (353)
T 2g8s_A          207 WSNALWLNEHGPRGGDEINIPQKGKN-YGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFP  285 (353)
T ss_dssp             TTTEEEEEEECSBSCEEEECCCTTCB-CCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSG
T ss_pred             CCCCEEEEecCCCCCcEEeEeccCCc-CCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCc
Confidence            5456999998754   5655432111 0000                     0000    001 12477888863     


Q ss_pred             --CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEE
Q 047259          114 --DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSA  190 (225)
Q Consensus       114 --~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~  190 (225)
                        +|.+|+++..                                    .++|.+++.+ |+.+.....-.+ ....+..+
T Consensus       286 ~~~g~l~v~~~~------------------------------------~~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v  328 (353)
T 2g8s_A          286 QWQQKLFIGALK------------------------------------DKDVIVMSVNGDKVTEDGRILTD-RGQRIRDV  328 (353)
T ss_dssp             GGTTEEEEEETT------------------------------------TTEEEEEEEETTEEEEEEEESGG-GCCCEEEE
T ss_pred             ccCCcEEEEEcc------------------------------------CCEEEEEEeCCCeEeeeEEcccC-CCCceeEE
Confidence              5889998876                                    4577777665 444332221011 12346666


Q ss_pred             EE-eCCEEEEe-eCCCCeEEEEeC
Q 047259          191 VE-FEDNLYMA-SIQSKFVGKLPL  212 (225)
Q Consensus       191 ~~-~~~~Lyv~-~~~~~~i~~~~~  212 (225)
                      +. .+|.|||+ +..+++|+|+..
T Consensus       329 ~~~pdG~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          329 RTGPDGYLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             EECTTSCEEEEECSTTEEEEEEEC
T ss_pred             EECCCCcEEEEEeCCCCEEEEEeC
Confidence            65 47899997 557899999864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.01  E-value=5.5e-08  Score=79.76  Aligned_cols=157  Identities=10%  Similarity=0.075  Sum_probs=103.6

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CCeEE---EEecCc-ccc-----ceeEEecCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LEETT---VLHEGF-YFA-----NGVALSKDENF   71 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~---~~~~~~-~~p-----nGi~~~~dg~~   71 (225)
                      +++|++.++|.+|+++.+                 .++++.++.. .+.+.   ...-.+ ..+     .||+++|++++
T Consensus        72 ~EGIa~~~~g~~~vs~E~-----------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~  134 (255)
T 3qqz_A           72 LETIEYIGDNQFVISDER-----------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT  134 (255)
T ss_dssp             EEEEEECSTTEEEEEETT-----------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE
T ss_pred             hHHeEEeCCCEEEEEECC-----------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE
Confidence            457888888888888665                 3455555432 13222   111111 234     89999999988


Q ss_pred             EEEEeCCCC-EEEEEEecCC-CCCceeEEec-----c-CCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHH
Q 047259           72 VVVCESWKF-RCRRYWLKGP-RQGRLESFIE-----H-LPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLL  142 (225)
Q Consensus        72 Lyv~~~~~~-~I~~~~~~~~-~~~~~~~~~~-----~-~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~  142 (225)
                      ||++.-... +|+.++  +- .....+++..     . .-.-+.++++|+. |++|+....                   
T Consensus       135 L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~-------------------  193 (255)
T 3qqz_A          135 FWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE-------------------  193 (255)
T ss_dssp             EEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT-------------------
T ss_pred             EEEEECcCCceEEEEc--ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC-------------------
Confidence            998876654 888887  21 0112333211     0 1124789999985 789998766                   


Q ss_pred             HhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCC-----cccceeEEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259          143 QAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNAT-----YISFVTSAVEF-EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       143 ~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~-----~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                                       ...++++|.+|+++..+....|.     .++.+-+++.+ +|+|||++= .+.+++|....
T Consensus       194 -----------------s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          194 -----------------SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTPQS  253 (255)
T ss_dssp             -----------------TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC--
T ss_pred             -----------------CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEecC
Confidence                             45899999999999999876542     25566777764 789999964 47999997654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.00  E-value=4.4e-08  Score=81.40  Aligned_cols=101  Identities=19%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-------ccccceeEEecCCCEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-------FYFANGVALSKDENFVV   73 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~pnGi~~~~dg~~Ly   73 (225)
                      |+.+++.+||+ +|++...                 .+.|+.+|..+++.......       ...|++++++|||+.||
T Consensus        45 ~~~~~~s~dg~~~~v~~~~-----------------~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  107 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNH-----------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  107 (349)
T ss_dssp             SCEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CceeEECCCCCEEEEEeCC-----------------CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEE
Confidence            57788899886 7888654                 57899999887776544332       33489999999999999


Q ss_pred             EEeCC-----------CCEEEEEEecCCCCCc-eeEEeccCCCCCCceEECCCCCEEEEe
Q 047259           74 VCESW-----------KFRCRRYWLKGPRQGR-LESFIEHLPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        74 v~~~~-----------~~~I~~~~~~~~~~~~-~~~~~~~~~g~Pd~i~~d~~G~l~v~~  121 (225)
                      ++...           .+.|+.+++++..... ...+.  .+..+.+++++++|++|++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~l~~~~  165 (349)
T 1jmx_B          108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVAG  165 (349)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEES
T ss_pred             EEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCcEEEcc
Confidence            99855           5799999987522111 12221  33457888899999988853

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.99  E-value=2.3e-08  Score=85.10  Aligned_cols=139  Identities=10%  Similarity=0.098  Sum_probs=87.3

Q ss_pred             CcEEEEEeCCCCeEEEEe-----cCccccceeEEecCCCEEEEEeCCCCEEEEEEec-CCCCCceeEEe--cc-C-CCCC
Q 047259           37 HGQLLKYDPELEETTVLH-----EGFYFANGVALSKDENFVVVCESWKFRCRRYWLK-GPRQGRLESFI--EH-L-PGGP  106 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-----~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~-~~~~~~~~~~~--~~-~-~g~P  106 (225)
                      ...+|.++.+ +++....     +....|++++++|||++||+++.+.++|+.|+++ ++   ......  .. . ...|
T Consensus       120 ~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g---~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          120 YGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG---EVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             EEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS---CEEEEEEEECSSTTCCE
T ss_pred             eEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC---CEEEeeeEecCCCCCCC
Confidence            3455666543 5544322     2456899999999999999999988999999986 32   222111  11 1 3468


Q ss_pred             CceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEE---EEE-CCC
Q 047259          107 DNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIM---DFN-DPN  180 (225)
Q Consensus       107 d~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~---~~~-~p~  180 (225)
                      .+++++++|+ +|++.....                                  .-.|+.+++ +|++..   .+. .|.
T Consensus       196 ~~~~~spdg~~l~v~~~~~~----------------------------------~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGN----------------------------------RICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTT----------------------------------EEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             CEeEECCCCCEEEEEECCCC----------------------------------eEEEEEEeCCCCcEEEccceEEcCCC
Confidence            9999999996 677654311                                  345666776 477532   333 333


Q ss_pred             CCc-cc-------ceeEEE-E--eCCEEEEeeCCCC-----eEEEEeCC
Q 047259          181 ATY-IS-------FVTSAV-E--FEDNLYMASIQSK-----FVGKLPLN  213 (225)
Q Consensus       181 g~~-~~-------~~t~~~-~--~~~~Lyv~~~~~~-----~i~~~~~~  213 (225)
                      +.. ..       .+..++ .  ++..||+++...+     .|.+++++
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            210 01       245555 4  3568999987766     88888875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.98  E-value=1.1e-07  Score=80.71  Aligned_cols=153  Identities=15%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      ++++++.++|+ ||++...                 .+.|+.+|..+++..........|.+++++||++.||++....+
T Consensus       118 ~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          118 PLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             EEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             cceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCC
Confidence            35677778775 6677554                 67899999887877766666678899999999999999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      .|+.+++.+.   ....... ....+.+++++++|+ +|++.....                                  
T Consensus       181 ~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~----------------------------------  222 (391)
T 1l0q_A          181 SISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKY----------------------------------  222 (391)
T ss_dssp             EEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSS----------------------------------
T ss_pred             EEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcC----------------------------------
Confidence            9999998652   2211221 334578999999997 566654210                                  


Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+.|..+|.. ++.+..+....     .+..+..  ++..||++....+.|.++++..
T Consensus       223 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          223 FNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             CCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            4678888865 67777776532     2344444  3568999988889999998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=1.2e-08  Score=89.75  Aligned_cols=80  Identities=15%  Similarity=0.042  Sum_probs=58.7

Q ss_pred             CCCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--c------CccccceeEEecCCCE
Q 047259            1 FTNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--E------GFYFANGVALSKDENF   71 (225)
Q Consensus         1 ~pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~------~~~~pnGi~~~~dg~~   71 (225)
                      .| ++++++|| .+|++++...  +      ...+...+.|..+|..++++...+  .      ....|.+++++|||++
T Consensus       120 ~P-gia~SpDgk~lyVan~~~~--~------~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~  190 (426)
T 3c75_H          120 LP-HPVAAEDGSFFAQASTVFE--R------IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN  190 (426)
T ss_dssp             SC-EEEECTTSSCEEEEEEEEE--E------TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred             CC-ceEECCCCCEEEEEecccc--c------cccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence            37 89999999 5999986410  0      001123568999999877765432  2      1357999999999999


Q ss_pred             EEEEeCC-CCEEEEEEecC
Q 047259           72 VVVCESW-KFRCRRYWLKG   89 (225)
Q Consensus        72 Lyv~~~~-~~~I~~~~~~~   89 (225)
                      |||++.. .+.|..+|...
T Consensus       191 lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          191 LLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             EEEEECSSSCEEEEEETTT
T ss_pred             EEEEecCCCCeEEEEECCC
Confidence            9999875 78999999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.93  E-value=3.7e-08  Score=83.17  Aligned_cols=104  Identities=16%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe------cCccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH------EGFYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~------~~~~~pnGi~~~~dg~~Lyv   74 (225)
                      |+.+++++||+ +|+++..                 .+.|..|+.++++++.+.      .+...|.+|+|+|||++||+
T Consensus       213 ~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v  275 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEI-----------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA  275 (361)
T ss_dssp             EEEEEECTTSSEEEEEETT-----------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred             CeEEEEcCCCCEEEEEcCC-----------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence            56789999996 8888754                 456766666556654432      22345789999999999999


Q ss_pred             EeCC-CCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCCCC-EEEEeec
Q 047259           75 CESW-KFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        75 ~~~~-~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      +... .+.|..|+++.. .+..+.... .....|.+++++++|+ ||++...
T Consensus       276 ~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~  326 (361)
T 3scy_A          276 SNRLKADGVAIFKVDET-NGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD  326 (361)
T ss_dssp             EECSSSCEEEEEEECTT-TCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             ECCCCCCEEEEEEEcCC-CCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence            9998 889999888521 122222211 1234799999999998 6776644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.92  E-value=4.4e-08  Score=89.13  Aligned_cols=84  Identities=13%  Similarity=0.007  Sum_probs=62.2

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCCCCCceEEC---
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPGGPDNINLA---  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~d---  112 (225)
                      .+.|..+|..++++...+.....|.+++++|||++||++.. .+.|..|++...   ..++.... ....|.+++++   
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~---t~~~v~~i~~G~~P~~ia~s~~~  251 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMK---EPTTVAEIKIGSEARSIETSKME  251 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSS---SCCEEEEEECCSEEEEEEECCST
T ss_pred             CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCC---CCcEeEEEecCCCCceeEEcccc
Confidence            78999999988877665555667899999999999999974 679999998411   11111111 33469999999   


Q ss_pred             -CCCC-EEEEeecC
Q 047259          113 -PDGS-FWVALIKM  124 (225)
Q Consensus       113 -~~G~-l~v~~~~~  124 (225)
                       +||+ +||++...
T Consensus       252 ~pDGk~l~v~n~~~  265 (567)
T 1qks_A          252 GWEDKYAIAGAYWP  265 (567)
T ss_dssp             TCTTTEEEEEEEET
T ss_pred             CCCCCEEEEEEccC
Confidence             5986 78887663

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.92  E-value=8.9e-08  Score=86.49  Aligned_cols=150  Identities=9%  Similarity=0.018  Sum_probs=105.3

Q ss_pred             EcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEE
Q 047259            7 EASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYW   86 (225)
Q Consensus         7 ~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~   86 (225)
                      ++++|.+|+++..                 .+.|..+|..++++.........+.+++++|||++||++... +.|..|+
T Consensus       145 ~~p~~~~~vs~~~-----------------d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D  206 (543)
T 1nir_A          145 LDLPNLFSVTLRD-----------------AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMID  206 (543)
T ss_dssp             CCGGGEEEEEEGG-----------------GTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEE
T ss_pred             cCCCCEEEEEEcC-----------------CCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEE
Confidence            5677888888665                 678999999888776555433338999999999999999987 9999999


Q ss_pred             e--cCCCCCceeEEeccCCCCCCceEECC----CCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           87 L--KGPRQGRLESFIEHLPGGPDNINLAP----DGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        87 ~--~~~~~~~~~~~~~~~~g~Pd~i~~d~----~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      +  .+.  .....+ . ....|.++++++    +|+ +|++...                                    
T Consensus       207 ~~~~t~--~~~~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~------------------------------------  246 (543)
T 1nir_A          207 LWAKEP--TKVAEI-K-IGIEARSVESSKFKGYEDRYTIAGAYW------------------------------------  246 (543)
T ss_dssp             TTSSSC--EEEEEE-E-CCSEEEEEEECCSTTCTTTEEEEEEEE------------------------------------
T ss_pred             CcCCCC--cEEEEE-e-cCCCcceEEeCCCcCCCCCEEEEEEcc------------------------------------
Confidence            8  331  111111 1 334689999999    987 6777755                                    


Q ss_pred             ceEEEEECCC-CcEEEEEECCC----CCc---ccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPN----ATY---ISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~----g~~---~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+.|..+|.+ ++++..+..+.    +..   -+.+..++.  .++.+|++....+.|..++...
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            3467777764 78887776421    000   012344444  3688999999999999998865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.91  E-value=2.3e-07  Score=79.96  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=55.1

Q ss_pred             cEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-C-------ccccceeEEecCCCEEEE
Q 047259            4 DVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-G-------FYFANGVALSKDENFVVV   74 (225)
Q Consensus         4 dv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~-------~~~pnGi~~~~dg~~Lyv   74 (225)
                      ++++++|| .+|+++....  .      ...+...+.|..+|..+.++..... +       ...|.+++++|||++|||
T Consensus        70 ~i~~spDg~~lyv~n~~~~--~------~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v  141 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFS--R------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF  141 (373)
T ss_pred             CeEECCCCCEEEEEecccc--c------cccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEE
Confidence            89999999 4999986411  0      0011235678899987655433221 1       257999999999999999


Q ss_pred             EeCC-CCEEEEEEecCC
Q 047259           75 CESW-KFRCRRYWLKGP   90 (225)
Q Consensus        75 ~~~~-~~~I~~~~~~~~   90 (225)
                      +... .+.|..++ ++.
T Consensus       142 ~n~~~~~~v~viD-~t~  157 (373)
T 2mad_H          142 FQFAAGPAVGLVV-QGG  157 (373)
T ss_pred             EecCCCCeEEEEE-CCC
Confidence            9875 68999999 753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.89  E-value=3.3e-08  Score=85.29  Aligned_cols=146  Identities=5%  Similarity=-0.179  Sum_probs=100.5

Q ss_pred             CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CCCE
Q 047259           11 GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------WKFR   81 (225)
Q Consensus        11 G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------~~~~   81 (225)
                      .++|+++....             ....+|..+|.+++++.....-...| |++++||+++|||+++         ..+.
T Consensus        32 ~~~yV~~~~~~-------------~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           32 RRSHITLPAYF-------------AGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             TEEEEEECTTT-------------CSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CeEEEECCccC-------------CccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            57999988621             01228999999888877666555678 9999999999999984         4689


Q ss_pred             EEEEEecCCCCCceeEEeccC-----CCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           82 CRRYWLKGPRQGRLESFIEHL-----PGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~-----~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      |..||+.+...- .++-....     ...|.++++++||+ +||++...                               
T Consensus        98 VsviD~~T~~vv-~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~-------------------------------  145 (368)
T 1mda_H           98 VEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS-------------------------------  145 (368)
T ss_dssp             EEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS-------------------------------
T ss_pred             EEEEECCCCCEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEccCC-------------------------------
Confidence            999998753111 11111100     13699999999995 89987652                               


Q ss_pred             CCCcceEEEE--ECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          156 GNDAGARIVK--VDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       156 ~~~~~~~V~~--~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                          ...|..  +|+..  +..+..+.+  +    .+.+.++++|++...++++.++++.+
T Consensus       146 ----~~~v~V~~iD~~t--v~~i~v~~~--~----~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          146 ----SAAAGLSVPGASD--DQLTKSASC--F----HIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             ----SCEEEEEETTTEE--EEEEECSSC--C----CCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             ----CCeEEEEEEchhh--ceEEECCCc--e----EEccCCCeEEEEEcCCCCEEEEECcc
Confidence                235666  77755  456665432  1    12456677888888888888888876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.85  E-value=3.8e-07  Score=82.35  Aligned_cols=158  Identities=9%  Similarity=-0.071  Sum_probs=106.6

Q ss_pred             CCcEEEcC----CCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC------------ccccceeE
Q 047259            2 TNDVIEAS----DGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG------------FYFANGVA   64 (225)
Q Consensus         2 pndv~~~~----dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------------~~~pnGi~   64 (225)
                      |..+++++    ||+ +|+++..                 .+.|..+|..++++......            ...+.+|+
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             cceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence            56788998    885 7777543                 46788888877765544322            12567899


Q ss_pred             EecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHH
Q 047259           65 LSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQ  143 (225)
Q Consensus        65 ~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~  143 (225)
                      ++++++.+|++....++|+.++......-.... +. ....|.+++++++|+ +|++...                    
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~-i~-~~~~~~~~~~spdg~~l~va~~~--------------------  344 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-IG-AAPFLHDGGWDSSHRYFMTAANN--------------------  344 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE-EE-CCSSCCCEEECTTSCEEEEEEGG--------------------
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEE-ec-cCcCccCceECCCCCEEEEEecC--------------------
Confidence            999999999999999999999987531111111 22 345799999999998 5666655                    


Q ss_pred             hhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCC-CcccceeEEEEeCCEEEEeeC-CCCeEEEEeCCC
Q 047259          144 AYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNA-TYISFVTSAVEFEDNLYMASI-QSKFVGKLPLNT  214 (225)
Q Consensus       144 ~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g-~~~~~~t~~~~~~~~Lyv~~~-~~~~i~~~~~~~  214 (225)
                                      ...|..+|.+ |+++..+..... ......+...+.++.+|++.. ..+.|.+++.++
T Consensus       345 ----------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          345 ----------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             ----------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ----------------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence                            3467778875 888887764111 000122211223589999875 678999999876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.85  E-value=1.5e-07  Score=78.19  Aligned_cols=99  Identities=8%  Similarity=-0.061  Sum_probs=73.2

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc--ccceeEEecCCCEEEEEeCCCCE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY--FANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ++++.+++++|++...                 .+.|+.+|..+++.........  .|.+++++|||+.+|++....+.
T Consensus         4 g~~~~~~~~~~v~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNY-----------------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCCTTCEEEEEEET-----------------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCC-----------------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc
Confidence            5677888899999876                 6799999998787665544333  69999999999999999988999


Q ss_pred             EEEEEecCCCCCceeEEecc--C----CCCCCceEECCCCC-EEEEee
Q 047259           82 CRRYWLKGPRQGRLESFIEH--L----PGGPDNINLAPDGS-FWVALI  122 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~--~----~g~Pd~i~~d~~G~-l~v~~~  122 (225)
                      |+.+++++.   ........  .    ...|.+++++++|+ +|++..
T Consensus        67 i~~~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           67 IYGIDLDTC---KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             EEEEETTTT---EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             EEEEeCCCC---cEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence            999998642   22111111  1    12388999999997 566653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.84  E-value=1.4e-07  Score=77.86  Aligned_cols=98  Identities=26%  Similarity=0.151  Sum_probs=72.2

Q ss_pred             CCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc------ccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY------FANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~------~pnGi~~~~dg~~Lyv   74 (225)
                      |++++++++| .+|++...                 .+.|+.+|..+++.........      .|.+++++|||+.||+
T Consensus        36 ~~~~~~s~dg~~l~v~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNK-----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             CCCEEECTTSSEEEEEETT-----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             ccceEEcCCCCEEEEEeCC-----------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence            6789999999 48888764                 5789999987777654333222      7899999999999999


Q ss_pred             EeC-----------CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEE
Q 047259           75 CES-----------WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVA  120 (225)
Q Consensus        75 ~~~-----------~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~  120 (225)
                      +..           ..+.|+.+++++.   ....... .+..|.+++++++|+ ||++
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETL---SRRKAFE-APRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEE-CCSSCCCEEECTTSSCEEEE
T ss_pred             EecccccccccccccCceEEEEECCCC---cEEEEEe-CCCCcceeEECCCCCEEEEe
Confidence            963           3589999998642   2211221 345689999999997 7777

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.83  E-value=5.6e-07  Score=73.75  Aligned_cols=162  Identities=12%  Similarity=0.108  Sum_probs=106.0

Q ss_pred             CcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .+++.++++ +||+....                 .+.|+++|.. +++....  .+..-+.||++.++++ +||++...
T Consensus        30 SGla~~~~~~~L~aV~d~-----------------~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~   90 (255)
T 3qqz_A           30 SSLTWSAQSNTLFSTINK-----------------PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERD   90 (255)
T ss_dssp             EEEEEETTTTEEEEEEET-----------------TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTT
T ss_pred             ceeEEeCCCCEEEEEECC-----------------CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCC
Confidence            468888864 68876554                 5799999997 6655443  5667899999999875 88888888


Q ss_pred             CEEEEEEecCCCC-CceeEEeccCCCC-----CCceEECCCC-CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           80 FRCRRYWLKGPRQ-GRLESFIEHLPGG-----PDNINLAPDG-SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        80 ~~I~~~~~~~~~~-~~~~~~~~~~~g~-----Pd~i~~d~~G-~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                      ++|+.|+++.... .......-.....     ..||++|+++ +||++.-..                            
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~----------------------------  142 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN----------------------------  142 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS----------------------------
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC----------------------------
Confidence            9999999874311 1111111001112     3899999987 799976541                            


Q ss_pred             ccCCCCcceEEEEEC--CCCcEEEEEECCC---CCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          153 IPLGNDAGARIVKVD--THGKIIMDFNDPN---ATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d--~~G~~~~~~~~p~---g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                             ...|++++  +.++.+..+.++.   ...+..+++++.+  .++||+-+..+..|..+++.+....
T Consensus       143 -------p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~  208 (255)
T 3qqz_A          143 -------PIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG  208 (255)
T ss_dssp             -------SEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE
T ss_pred             -------CceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEE
Confidence                   34677776  2222233332210   1113345666654  5899999999999999998887443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.78  E-value=9.2e-07  Score=75.94  Aligned_cols=172  Identities=17%  Similarity=0.136  Sum_probs=110.9

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +.+++++++|+ ||++......          .....|.|+.+|..+++..........+.+++++|+++.||++....+
T Consensus       256 ~~~~~~~~~g~~l~~~~~~~~~----------~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          256 PRGLLLSKDGKELYIAQFSASN----------QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             EEEEEECTTSSEEEEEEEESCT----------TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred             ceEEEEcCCCCEEEEEECCCCc----------cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCC
Confidence            34677777774 5554432100          001367999999877776655544567899999999999999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      +|..+++++.   ....... ....|..++++++|+ +|++.........                    ..+.....  
T Consensus       326 ~v~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~--------------------~~~~~g~~--  379 (433)
T 3bws_A          326 KIEVYDLKEK---KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTE--------------------GYLKKGLV--  379 (433)
T ss_dssp             EEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTT--------------------CTTSCCSS--
T ss_pred             EEEEEECCCC---cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccc--------------------cccccccc--
Confidence            9999998742   2211122 334578999999997 6776654211000                    00000111  


Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+.|..+|.. |+.+..+..  +.   .++.+..  ++..||+++...+.|.++++++
T Consensus       380 dg~v~~~d~~~~~~~~~~~~--~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          380 LGKVYVIDTTTDTVKEFWEA--GN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--SS---SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ceEEEEEECCCCcEEEEecC--CC---CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            4688889874 787777765  22   3455554  3567888888789999988764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.77  E-value=2.4e-07  Score=81.54  Aligned_cols=166  Identities=17%  Similarity=0.105  Sum_probs=105.9

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc----cccceeEEecCCCEEEEEeC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF----YFANGVALSKDENFVVVCES   77 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~----~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      |+.+.+.++| ||++.++..           .+...|.|+.+|.++.++.......    .++..+.++|+++.+|++++
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~-----------~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~w  207 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNE-----------EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEW  207 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEET-----------TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBC
T ss_pred             ccceeECCCe-EEEEcCCCc-----------CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccC
Confidence            6778899999 999988732           2455789999999878776655422    34566788999998899884


Q ss_pred             C------------------CCEEEEEEecCCCCCceeEEecc-CCCCCCceEE--CCCCC-EEEEeecCCchhhhhhhcC
Q 047259           78 W------------------KFRCRRYWLKGPRQGRLESFIEH-LPGGPDNINL--APDGS-FWVALIKMNQTGVRAIQSC  135 (225)
Q Consensus        78 ~------------------~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~--d~~G~-l~v~~~~~~~~~~~~~~~~  135 (225)
                      +                  .++|..|++++.  .....+.-. ....|.+|.+  +++|+ .||+.--.-.         
T Consensus       208 g~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~---------  276 (462)
T 2ece_A          208 AVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK---------  276 (462)
T ss_dssp             CCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT---------
T ss_pred             cCccccccccchhhhhhccCCEEEEEECCCC--cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc---------
Confidence            3                  789999998752  111111101 1136888877  99986 6887751000         


Q ss_pred             hhHHHHHHhhhhhhhhhccCCCCcceEEE--EECCCCcE--EEEEECCCCCc--------------ccceeEEEE--eCC
Q 047259          136 PDKWKLLQAYPELINLLIPLGNDAGARIV--KVDTHGKI--IMDFNDPNATY--------------ISFVTSAVE--FED  195 (225)
Q Consensus       136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~--~~d~~G~~--~~~~~~p~g~~--------------~~~~t~~~~--~~~  195 (225)
                                            +-.+.|+  .++. |+.  ..++..+..++              -..++.+..  +++
T Consensus       277 ----------------------~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr  333 (462)
T 2ece_A          277 ----------------------DLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK  333 (462)
T ss_dssp             ----------------------TCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred             ----------------------CCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence                                  0033443  3443 533  22332222110              123455543  578


Q ss_pred             EEEEeeCCCCeEEEEeCC
Q 047259          196 NLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       196 ~Lyv~~~~~~~i~~~~~~  213 (225)
                      +|||++++.+.|.+|++.
T Consensus       334 fLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          334 FLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEEEEETTTTEEEEEECS
T ss_pred             EEEEEeCCCCEEEEEEec
Confidence            999999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.77  E-value=7.5e-07  Score=76.52  Aligned_cols=157  Identities=12%  Similarity=0.088  Sum_probs=106.3

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      ++++.++|++|++...                 .+.|..||.++++..... .....+++++++|+++.||++....+.|
T Consensus       174 ~~~~~~~~~~~~s~~~-----------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  236 (433)
T 3bws_A          174 TISIPEHNELWVSQMQ-----------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDI  236 (433)
T ss_dssp             EEEEGGGTEEEEEEGG-----------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEcCCCEEEEEECC-----------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcE
Confidence            4566666666666553                 678999998766654433 4466899999999999999999888999


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcce
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGA  161 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~  161 (225)
                      ..++++..   ....... ..+.|.+++++++|+ +|++...... .                          ...  .+
T Consensus       237 ~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~-~--------------------------~~~--dg  283 (433)
T 3bws_A          237 SVIDRKTK---LEIRKTD-KIGLPRGLLLSKDGKELYIAQFSASN-Q--------------------------ESG--GG  283 (433)
T ss_dssp             EEEETTTT---EEEEECC-CCSEEEEEEECTTSSEEEEEEEESCT-T--------------------------CSC--CE
T ss_pred             EEEECCCC---cEEEEec-CCCCceEEEEcCCCCEEEEEECCCCc-c--------------------------ccC--CC
Confidence            99998642   2211111 234588999999996 6666654210 0                          001  57


Q ss_pred             EEEEECCC-CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          162 RIVKVDTH-GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       162 ~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .|..+|.. |+.+..+..+.     .+..++.  .++.||++....+.|.++++.+.
T Consensus       284 ~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          284 RLGIYSMDKEKLIDTIGPPG-----NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEEEETTTTEEEEEEEEEE-----CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEECCCCcEEeeccCCC-----CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            88888875 67666654321     2344443  34589999999999999998753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.75  E-value=8.8e-07  Score=76.53  Aligned_cols=146  Identities=12%  Similarity=0.063  Sum_probs=96.7

Q ss_pred             CCCcEEEc-C-------CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--------------cC--
Q 047259            1 FTNDVIEA-S-------DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--------------EG--   56 (225)
Q Consensus         1 ~pndv~~~-~-------dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--------------~~--   56 (225)
                      |.||++++ .       ++-+|+||..                 .+.|..||..+++...+.              .+  
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~  215 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKE  215 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEE
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEE
Confidence            45889999 2       4569999987                 234555555444322221              11  


Q ss_pred             ---ccccceeEEecC----CCEEEEEeCCCCEEEEEEec---CCC-CCceeEEeccCCCCCC--ceEEC-CCCCEEEEee
Q 047259           57 ---FYFANGVALSKD----ENFVVVCESWKFRCRRYWLK---GPR-QGRLESFIEHLPGGPD--NINLA-PDGSFWVALI  122 (225)
Q Consensus        57 ---~~~pnGi~~~~d----g~~Lyv~~~~~~~I~~~~~~---~~~-~~~~~~~~~~~~g~Pd--~i~~d-~~G~l~v~~~  122 (225)
                         .....||++||+    ++.||+......+++++..+   ... ....+.+.+ .+...+  ++++| .+|+||++..
T Consensus       216 ~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~  294 (381)
T 3q6k_A          216 YEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEA  294 (381)
T ss_dssp             EEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEES
T ss_pred             eEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEec
Confidence               125689999998    89999999999999999853   221 222332221 221234  56786 7899999998


Q ss_pred             cCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-c-----EEEEEECCCCCcccceeEEEE-eCC
Q 047259          123 KMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-K-----IIMDFNDPNATYISFVTSAVE-FED  195 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~-----~~~~~~~p~g~~~~~~t~~~~-~~~  195 (225)
                      .                                    +..|...++++ .     ....++++  . +..++++.. .+|
T Consensus       295 ~------------------------------------~~aI~~w~~~~~~~~~~n~~~l~~d~--~-l~~pd~~~i~~~g  335 (381)
T 3q6k_A          295 N------------------------------------TKQVSCWNTQKMPLRMKNTDVVYTSS--R-FVFGTDISVDSKG  335 (381)
T ss_dssp             S------------------------------------SSEEEEEETTSCSBCGGGEEEEEECT--T-CCSEEEEEECTTS
T ss_pred             c------------------------------------CCeEEEEeCCCCccccCceEEEEECC--C-ccccCeEEECCCC
Confidence            7                                    66899999987 2     34455665  3 556777766 478


Q ss_pred             EEEEeeCC
Q 047259          196 NLYMASIQ  203 (225)
Q Consensus       196 ~Lyv~~~~  203 (225)
                      .|||.+..
T Consensus       336 ~Lwv~sn~  343 (381)
T 3q6k_A          336 GLWFMSNG  343 (381)
T ss_dssp             CEEEEECS
T ss_pred             eEEEEECc
Confidence            99998754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.74  E-value=8.4e-07  Score=73.39  Aligned_cols=131  Identities=10%  Similarity=0.067  Sum_probs=76.8

Q ss_pred             cEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           38 GQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      +.|+++|. +++.... .........++.+++|+ ||++.. .+.|++++.++.   ....+. .....+..+.+|++|+
T Consensus       195 ~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~~gl~~~~~~g~---~~~~~~-~~~~~~~~~~~~~~g~  267 (330)
T 3hxj_A          195 DKVYAINP-DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-DGHLYAINPDGT---EKWRFK-TGKRIESSPVIGNTDT  267 (330)
T ss_dssp             SSEEEECT-TSCEEEEECCSSCCCSCCEECTTSC-EEEEET-TTEEEEECTTSC---EEEEEE-CSSCCCSCCEECTTSC
T ss_pred             CEEEEECC-CCcEEEEEccCCcceeceEECCCCe-EEEEcC-CCeEEEECCCCC---EeEEee-CCCCccccceEcCCCe
Confidence            45667773 3433222 22234467788888775 777765 357888865432   111111 1223456677888888


Q ss_pred             EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCC
Q 047259          117 FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FED  195 (225)
Q Consensus       117 l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~  195 (225)
                      ||++...                                     +.+.++|++|+.+..+..+...    ...++. .++
T Consensus       268 l~v~t~~-------------------------------------ggl~~~d~~g~~~~~~~~~~~~----~~~~~~d~~g  306 (330)
T 3hxj_A          268 IYFGSYD-------------------------------------GHLYAINPDGTEKWNFETGSWI----IATPVIDENG  306 (330)
T ss_dssp             EEEECTT-------------------------------------CEEEEECTTSCEEEEEECSSCC----CSCCEECTTC
T ss_pred             EEEecCC-------------------------------------CCEEEECCCCcEEEEEEcCCcc----ccceEEcCCC
Confidence            8886533                                     4789999999988777765332    222334 689


Q ss_pred             EEEEeeCCCCeEEEEeCCCccc
Q 047259          196 NLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       196 ~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      +||+++.. +.+...+...+..
T Consensus       307 ~l~~gt~~-G~~~~~~~~~~~~  327 (330)
T 3hxj_A          307 TIYFGTRN-GKFYALFNLEHHH  327 (330)
T ss_dssp             CEEEECTT-SCEEEEEC-----
T ss_pred             EEEEEcCC-CeEEEEecccccc
Confidence            99998754 6666666655443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.72  E-value=1.8e-07  Score=79.93  Aligned_cols=99  Identities=9%  Similarity=-0.053  Sum_probs=68.8

Q ss_pred             CC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------CC
Q 047259           10 DG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------WK   79 (225)
Q Consensus        10 dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------~~   79 (225)
                      ++ .+|+++....            ....+.|+.||..++++.........| +|+++|||++||+++.         ..
T Consensus        14 ~~~~~yv~~~~~~------------~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~   80 (361)
T 2oiz_A           14 QENRIYVMDSVFM------------HLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRS   80 (361)
T ss_dssp             GGGEEEEEECCGG------------GGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEE
T ss_pred             CCCEEEEECCCCC------------ccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCC
Confidence            44 6999987521            112579999998888876666556778 9999999999999984         24


Q ss_pred             CEEEEEEecCCCCCceeEEe-c--c--CCCCCCceEECCCCC-EEEEeec
Q 047259           80 FRCRRYWLKGPRQGRLESFI-E--H--LPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~-~--~--~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      +.|..|++.+.  .....+. .  .  ....|.+++++++|+ ||++...
T Consensus        81 ~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A           81 DVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             EEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred             CEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC
Confidence            67999987642  1111111 0  0  123699999999996 7887754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.71  E-value=1.3e-06  Score=71.99  Aligned_cols=144  Identities=12%  Similarity=-0.026  Sum_probs=90.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCcc---ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC----CCCce
Q 047259           37 HGQLLKYDPELEETTVLHEGFY---FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG----GPDNI  109 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~---~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g----~Pd~i  109 (225)
                      .+.|..+|..++++........   .|.+++++|||+.||++....+.|+.+++.+..  ....+....++    .|.++
T Consensus        10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~   87 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCE
T ss_pred             CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccce
Confidence            6789999988777655444333   599999999999999999988999999986521  11112111111    68999


Q ss_pred             EECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccce
Q 047259          110 NLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFV  187 (225)
Q Consensus       110 ~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~  187 (225)
                      +++++|+ +|++..+....                  +.       ......+.|..+|.+ ++.+..+..+..     +
T Consensus        88 ~~s~dg~~l~~~~~~~~~~------------------~~-------~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~  137 (337)
T 1pby_B           88 ALSPDGKTLAIYESPVRLE------------------LT-------HFEVQPTRVALYDAETLSRRKAFEAPRQ-----I  137 (337)
T ss_dssp             EECTTSSEEEEEEEEEEEC------------------SS-------CEEECCCEEEEEETTTTEEEEEEECCSS-----C
T ss_pred             EECCCCCEEEEEecccccc------------------cc-------cccccCceEEEEECCCCcEEEEEeCCCC-----c
Confidence            9999995 77776431000                  00       000003678888876 566666664221     2


Q ss_pred             eEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          188 TSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       188 t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ..+..  ++..||++   ++.|.++++.+.
T Consensus       138 ~~~~~s~dg~~l~~~---~~~i~~~d~~~~  164 (337)
T 1pby_B          138 TMLAWARDGSKLYGL---GRDLHVMDPEAG  164 (337)
T ss_dssp             CCEEECTTSSCEEEE---SSSEEEEETTTT
T ss_pred             ceeEECCCCCEEEEe---CCeEEEEECCCC
Confidence            22333  34568887   467888877643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.66  E-value=2.1e-06  Score=78.10  Aligned_cols=70  Identities=11%  Similarity=0.001  Sum_probs=54.9

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC--CCeEEEEecCccccceeEEe----cCCCEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE--LEETTVLHEGFYFANGVALS----KDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~~~~pnGi~~~----~dg~~Lyv   74 (225)
                      |+.+++++||+ +|+++.                  .+.|..||..  ++++...+.....|.+|+++    |||++|||
T Consensus       199 p~~v~~SpDGr~lyv~~~------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v  260 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGR------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  260 (567)
T ss_dssp             EEEEEECTTSCEEEEEET------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             ccceEECCCCCEEEEEcC------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEE
Confidence            56788999986 677642                  4689999984  55554444455679999999    69999999


Q ss_pred             EeCCCCEEEEEEecC
Q 047259           75 CESWKFRCRRYWLKG   89 (225)
Q Consensus        75 ~~~~~~~I~~~~~~~   89 (225)
                      +....+.|..++..+
T Consensus       261 ~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          261 GAYWPPQYVIMDGET  275 (567)
T ss_dssp             EEEETTEEEEEETTT
T ss_pred             EEccCCeEEEEECCC
Confidence            999999999988543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.66  E-value=2.7e-06  Score=70.28  Aligned_cols=128  Identities=11%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             CcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .+.|+++|.+ ++.... .........++.+++|. ||++.   +.|++++.++    ...--..........+++|++|
T Consensus       156 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~~g----~~~~~~~~~~~~~~~~~~~~~g  226 (330)
T 3hxj_A          156 DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINPDG----TEKWNFYAGYWTVTRPAISEDG  226 (330)
T ss_dssp             TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECTTS----CEEEEECCSSCCCSCCEECTTS
T ss_pred             CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECCCC----cEEEEEccCCcceeceEECCCC
Confidence            4678888887 554322 22234556788888876 88887   7899998433    1111111122346788999999


Q ss_pred             CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCC
Q 047259          116 SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFED  195 (225)
Q Consensus       116 ~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~  195 (225)
                      +||++...                                     +.+.+++++|+....+..+.+. ..  +.+...++
T Consensus       227 ~l~v~t~~-------------------------------------~gl~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~g  266 (330)
T 3hxj_A          227 TIYVTSLD-------------------------------------GHLYAINPDGTEKWRFKTGKRI-ES--SPVIGNTD  266 (330)
T ss_dssp             CEEEEETT-------------------------------------TEEEEECTTSCEEEEEECSSCC-CS--CCEECTTS
T ss_pred             eEEEEcCC-------------------------------------CeEEEECCCCCEeEEeeCCCCc-cc--cceEcCCC
Confidence            99998643                                     3678889999888777654331 21  12233479


Q ss_pred             EEEEeeCCCCeEEEEeCCC
Q 047259          196 NLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       196 ~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .||+++.. +.|.+++.++
T Consensus       267 ~l~v~t~~-ggl~~~d~~g  284 (330)
T 3hxj_A          267 TIYFGSYD-GHLYAINPDG  284 (330)
T ss_dssp             CEEEECTT-CEEEEECTTS
T ss_pred             eEEEecCC-CCEEEECCCC
Confidence            99999753 5788887543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.62  E-value=4e-07  Score=78.94  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=57.3

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cC------ccccceeEEecCCCEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EG------FYFANGVALSKDENFV   72 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~------~~~pnGi~~~~dg~~L   72 (225)
                      |+ ++++|||+ +|++++....+        ..+...+.|..||..++++...+  ..      ...|.+++++|||++|
T Consensus        81 P~-va~spDG~~lyVan~~~~r~--------~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~l  151 (386)
T 3sjl_D           81 PN-PVVADDGSFIAHASTVFSRI--------ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL  151 (386)
T ss_dssp             CE-EEECTTSSCEEEEEEEEEET--------TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEE
T ss_pred             Cc-EEECCCCCEEEEEccccccc--------ccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEE
Confidence            65 99999995 99998631000        00112567999999877754432  21      3479999999999999


Q ss_pred             EEEeCC-CCEEEEEEecC
Q 047259           73 VVCESW-KFRCRRYWLKG   89 (225)
Q Consensus        73 yv~~~~-~~~I~~~~~~~   89 (225)
                      ||++.. .+.|..+|.+.
T Consensus       152 yVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D          152 LFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             EEEECSSSCEEEEEETTT
T ss_pred             EEEEcCCCCeEEEEECCC
Confidence            999874 78999999875

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.60  E-value=1.1e-06  Score=73.73  Aligned_cols=130  Identities=12%  Similarity=0.085  Sum_probs=89.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK-FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      ...|++++.+.+..+.+..+   +..+.++|++++||+++... .+|++.+++|.   ..+++.+.  ..   ..++++|
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~---~~~~Lt~~--~~---~~~~~~g  234 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNP---NPVVLTEA--NI---EHYNVYG  234 (302)
T ss_dssp             TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSC---CCEECSCS--CE---EEEEEET
T ss_pred             CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCC---CeEEEeCC--Cc---ceEEECC
Confidence            46889999876666666543   22345779999999998764 59999999873   34444421  12   2355555


Q ss_pred             -CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeC
Q 047259          116 -SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFE  194 (225)
Q Consensus       116 -~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~  194 (225)
                       .||.+....                                   ...+.+++.||.....+..  +.    ...+...+
T Consensus       235 ~~Iy~~~~~~-----------------------------------~~~i~~~~~DG~~r~~l~~--~~----~~~i~i~~  273 (302)
T 3s25_A          235 SLIFYQRGGD-----------------------------------NPALCVVKNDGTGFKELAK--GE----FCNINVTS  273 (302)
T ss_dssp             TEEEEEECSS-----------------------------------SCEEEEEETTSCCCEEEEE--SC----EEEEEECS
T ss_pred             CEEEEEECCC-----------------------------------CcEEEEEECCCCccEEeeC--Cc----cceEEEeC
Confidence             476654331                                   4588999999977666654  22    22456789


Q ss_pred             CEEEEeeCCCCeEEEEeCCCcccc
Q 047259          195 DNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       195 ~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                      ++||++++..+.|.++++++....
T Consensus       274 d~Iy~td~~~~~i~~~~~dGs~~~  297 (302)
T 3s25_A          274 QYVYFTDFVSNKEYCTSTQNPDTI  297 (302)
T ss_dssp             SEEEEEETTTCCEEEEESSSCCSC
T ss_pred             CEEEEEECCCCeEEEEECCCCCce
Confidence            999999999999999999887643

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.59  E-value=1.2e-07  Score=85.43  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=56.7

Q ss_pred             CCCcEEEcCCCcEEE-EcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeC
Q 047259            1 FTNDVIEASDGSLYF-TVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         1 ~pndv~~~~dG~iy~-td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      .||+|+++++|+||| ||.+  ++...    ..++.....||++++.+|++++++.+  ...||||+|+||+++|||+..
T Consensus       477 sPDnL~fd~~G~LWf~TD~~--~~~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGD--SSNAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCC--CCCSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCC--cCccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence            489999999999999 8876  33221    12234566899999988999988754  467999999999999999965


Q ss_pred             C
Q 047259           78 W   78 (225)
Q Consensus        78 ~   78 (225)
                      -
T Consensus       551 H  551 (592)
T 4a9v_A          551 H  551 (592)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.58  E-value=3.5e-06  Score=74.21  Aligned_cols=121  Identities=8%  Similarity=0.015  Sum_probs=74.1

Q ss_pred             CCcEEEcCCCcEEEEc-CCCCCCcc-hhh-hhcccCCCCcEEEEEeCCCCeEEEEec---CccccceeEE--ecCCCEEE
Q 047259            2 TNDVIEASDGSLYFTV-SSKKYTPA-EYY-KDLVEGKPHGQLLKYDPELEETTVLHE---GFYFANGVAL--SKDENFVV   73 (225)
Q Consensus         2 pndv~~~~dG~iy~td-~~~~~~~~-~~~-~~~~~~~~~g~v~~~d~~~~~~~~~~~---~~~~pnGi~~--~~dg~~Ly   73 (225)
                      +-|+-+.+++++.+|. .+...++. .|. .++.. ....+|..||..++++...+.   ....|.+|.+  +||++++|
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~-~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD-RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGF  268 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH-HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhh-ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEE
Confidence            3456667887655553 22110000 011 11111 346789999987776554432   2367888877  99999999


Q ss_pred             EEeC-----CCCEEEEEEecCCCCCceeEE-------eccC----------CCCCCceEECCCCC-EEEEeec
Q 047259           74 VCES-----WKFRCRRYWLKGPRQGRLESF-------IEHL----------PGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        74 v~~~-----~~~~I~~~~~~~~~~~~~~~~-------~~~~----------~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      |+..     .++.|++|..+++.....+++       ...+          +..|.+|.+++||+ |||++.+
T Consensus       269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred             EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence            9998     888998877654211111111       0001          35689999999997 8999887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.57  E-value=7.9e-07  Score=80.70  Aligned_cols=123  Identities=11%  Similarity=0.057  Sum_probs=79.8

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCC--c-------chhh--------hhcc-cC--CCCcEEEEEeCCC--CeE-EEEecCc
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYT--P-------AEYY--------KDLV-EG--KPHGQLLKYDPEL--EET-TVLHEGF   57 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~--~-------~~~~--------~~~~-~~--~~~g~v~~~d~~~--~~~-~~~~~~~   57 (225)
                      |..+++++||+ +|+|+.....+  +       ..+.        .... .+  .-.+.|-.+|..+  +++ ...+...
T Consensus       197 pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg  276 (595)
T 1fwx_A          197 LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA  276 (595)
T ss_dssp             CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC
Confidence            67899999995 77776543221  0       0000        0000 01  0124588899875  333 3334445


Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCC------CCCc-eeEEecc-CCCCCCceEECCCCCEEEEeecC
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGP------RQGR-LESFIEH-LPGGPDNINLAPDGSFWVALIKM  124 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~------~~~~-~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~~  124 (225)
                      ..|.|+.++|||+++||++...+.|..|+.+..      .+.. ..+..+. ....|.++++|++|++|++.+-.
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld  351 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD  351 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC
Confidence            689999999999999999999999999998731      1111 1122221 23469999999999999998773

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.52  E-value=9e-07  Score=78.56  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             CCcEEEcCCCc--EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE----EE----EecC-----ccccceeEEe
Q 047259            2 TNDVIEASDGS--LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET----TV----LHEG-----FYFANGVALS   66 (225)
Q Consensus         2 pndv~~~~dG~--iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~----~~----~~~~-----~~~pnGi~~~   66 (225)
                      |-+|++.+||+  ||||+.                  .|+|+.++.+....    .-    ..++     ....-||+++
T Consensus        16 P~~~a~~pdG~~rl~V~er------------------~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~   77 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEK------------------EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFH   77 (463)
T ss_dssp             EEEEECCSSSSCCEEEEET------------------TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEEC
T ss_pred             ceEEEECCCCCeEEEEEeC------------------CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeC
Confidence            56789999985  999976                  47888887642211    11    1111     3456789999


Q ss_pred             cC---CCEEEEEeCC------------CCEEEEEEecCC---C--CCceeEEeccC-C---CCCCceEECCCCCEEEEee
Q 047259           67 KD---ENFVVVCESW------------KFRCRRYWLKGP---R--QGRLESFIEHL-P---GGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        67 ~d---g~~Lyv~~~~------------~~~I~~~~~~~~---~--~~~~~~~~~~~-~---g~Pd~i~~d~~G~l~v~~~  122 (225)
                      |+   .++|||+.+.            ..+|.||.++..   .  ....+++.+.. +   -....|++++||.|||+..
T Consensus        78 P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           78 PNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             TTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             CCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence            96   4569998753            148999998631   1  22344444321 1   1345799999999999988


Q ss_pred             cC
Q 047259          123 KM  124 (225)
Q Consensus       123 ~~  124 (225)
                      ..
T Consensus       158 d~  159 (463)
T 2wg3_C          158 DG  159 (463)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.47  E-value=1.6e-06  Score=77.99  Aligned_cols=82  Identities=15%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-CEEEEEEecCCCCCceeEEeccCCCCCCceE------
Q 047259           38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK-FRCRRYWLKGPRQGRLESFIEHLPGGPDNIN------  110 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~-~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~------  110 (225)
                      ..|+.+|.++++.+.+.......+.++|+|||+.|+.++... ..|++++++++   ..+ ........+.+++      
T Consensus       175 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~  250 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW  250 (582)
T ss_dssp             EEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred             eEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence            579999988788887766656679999999999998555432 38999998753   333 2222222234555      


Q ss_pred             --ECCCCCEEEEeec
Q 047259          111 --LAPDGSFWVALIK  123 (225)
Q Consensus       111 --~d~~G~l~v~~~~  123 (225)
                        +++||.+|++...
T Consensus       251 ~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          251 LGYLPDGRLAVVARR  265 (582)
T ss_dssp             EEECTTSCEEEEEEE
T ss_pred             eeEcCCCcEEEEEEc
Confidence              9999988887765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.46  E-value=1.3e-05  Score=69.48  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--C
Q 047259            3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--K   79 (225)
Q Consensus         3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~   79 (225)
                      +.+++.|||+ |+++.+.               .....|+.+|..+++...+.........++|+|||+.|+++...  .
T Consensus       226 ~~~~~spdg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          226 GAPAFSPDGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR  290 (415)
T ss_dssp             EEEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             cCEEEcCCCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCC
Confidence            3566777775 5555432               12457999998878877666555667889999999988776643  3


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEee
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~  122 (225)
                      .+|+.+++++.   ..+.+. ........++++++|+..+...
T Consensus       291 ~~i~~~d~~~~---~~~~l~-~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          291 PQVYKVNINGG---APQRIT-WEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             CEEEEEETTSS---CCEECC-CSSSEEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEECCCC---CEEEEe-cCCCcccCeEECCCCCEEEEEE
Confidence            48999998753   222222 1223345789999998554443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.45  E-value=3.5e-06  Score=74.54  Aligned_cols=71  Identities=10%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             eEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--C------CCCCCceEECC----CCC
Q 047259           49 ETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--L------PGGPDNINLAP----DGS  116 (225)
Q Consensus        49 ~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~------~g~Pd~i~~d~----~G~  116 (225)
                      +++++++++..|.+|++.|||+ |||++...++|++++.++   +..+.+...  .      .+.+-||++++    +|.
T Consensus        18 ~~~~~a~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~   93 (454)
T 1cru_A           18 DKKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPES---GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY   93 (454)
T ss_dssp             CEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTT---CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred             EEEEEECCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCC---CcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence            5677888899999999999997 999999878999998643   233333321  0      12345999998    688


Q ss_pred             EEEEeec
Q 047259          117 FWVALIK  123 (225)
Q Consensus       117 l~v~~~~  123 (225)
                      |||+...
T Consensus        94 lYv~~s~  100 (454)
T 1cru_A           94 IYISGTF  100 (454)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.44  E-value=7e-06  Score=70.05  Aligned_cols=137  Identities=13%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             EEEEEeCCCCeEEEEe-------cCccccceeEE--ecCCC--EEEEEeCCCCEEEEEEecCCCCC--ceeEEec-cCCC
Q 047259           39 QLLKYDPELEETTVLH-------EGFYFANGVAL--SKDEN--FVVVCESWKFRCRRYWLKGPRQG--RLESFIE-HLPG  104 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~-------~~~~~pnGi~~--~~dg~--~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~-~~~g  104 (225)
                      ++|.+|+.++.++.+.       ..+..|.|+|+  +++..  ++||++.. +++..|.+.....+  ..+.... .+++
T Consensus       102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgs  180 (355)
T 3amr_A          102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNS  180 (355)
T ss_dssp             EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSS
T ss_pred             EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCC
Confidence            5677788777777662       33478999999  77544  57888765 79999887421111  1121121 2567


Q ss_pred             CCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--C----cEEEEEE
Q 047259          105 GPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--G----KIIMDFN  177 (225)
Q Consensus       105 ~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G----~~~~~~~  177 (225)
                      .|.||++|+ .|.||+++-.                                    .+ |++++.+  +    +++..+.
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd------------------------------------~G-Iw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEED------------------------------------EA-IWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETT------------------------------------TE-EEEEECSTTSCSCCEEEEEBS
T ss_pred             CcceEEEcCCCCeEEEeccc------------------------------------ce-EEEEeCCcCCCCCceEEEEec
Confidence            899999997 5889999866                                    34 9999944  3    3443332


Q ss_pred             CCCCCcccceeEEEE--e---CCEEEEeeCCCCeEEEEeCCCc
Q 047259          178 DPNATYISFVTSAVE--F---EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       178 ~p~g~~~~~~t~~~~--~---~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                        .+.....+.+++.  .   .++|++++-+++...+|++.+.
T Consensus       224 --~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          224 --GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             --SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             --CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence              2322223444443  2   1589999999999999999743

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=1.2e-05  Score=75.19  Aligned_cols=149  Identities=11%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCCC
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG---FYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      ++..+++|+||+...                  .+.|+++++.+++++.....   ......|+.+++|+ ||++..  +
T Consensus       411 ~i~~d~~g~lWigt~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~--~  469 (781)
T 3v9f_A          411 CSLKDSEGNLWFGTY------------------LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH--A  469 (781)
T ss_dssp             EEEECTTSCEEEEET------------------TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET--T
T ss_pred             EEEECCCCCEEEEec------------------cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC--C
Confidence            455666777777643                  25689999877777665321   23456788888875 999876  5


Q ss_pred             EEEEEEecCCCCCceeEEeccC-----CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           81 RCRRYWLKGPRQGRLESFIEHL-----PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~-----~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      .|++|+.++.   ..+.+....     ......|+.|++|+||++..+                                
T Consensus       470 Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~--------------------------------  514 (781)
T 3v9f_A          470 GVFVIDLASK---KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG--------------------------------  514 (781)
T ss_dssp             EEEEEESSSS---SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS--------------------------------
T ss_pred             ceEEEeCCCC---eEEecccCcccccccceeEEEEEcCCCCEEEEEcC--------------------------------
Confidence            7999998653   222222111     123467899999999998864                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCC
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                           +.+.+++++++....+..+.+..-..+..+.. .+|.||+++. .+-|.+++..+
T Consensus       515 -----~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~  568 (781)
T 3v9f_A          515 -----GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARN  568 (781)
T ss_dssp             -----SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTT
T ss_pred             -----CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCC
Confidence                 23788998876666665544321223455554 4799999986 33327776544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=5e-06  Score=77.77  Aligned_cols=150  Identities=13%  Similarity=0.132  Sum_probs=97.6

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc----ccceeEEecCCCEEEEEeCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY----FANGVALSKDENFVVVCESW   78 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~----~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      +++..+++|+||++..+                  +.|+++|+++++++.......    ..+.|..+++|+ ||++.. 
T Consensus       498 ~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~-  557 (781)
T 3v9f_A          498 RSIAQDSEGRFWIGTFG------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQ-MWLATG-  557 (781)
T ss_dssp             EEEEECTTCCEEEEESS------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSC-EEEEET-
T ss_pred             EEEEEcCCCCEEEEEcC------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCC-EEEEEC-
Confidence            46778889999998653                  247889987777666543222    345788888887 999876 


Q ss_pred             CCEEEEEEecCCCCCceeEEec--cCCC-CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           79 KFRCRRYWLKGPRQGRLESFIE--HLPG-GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~~--~~~g-~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      .+-|.+|++++.   ..+.+..  .++. ...++..|++|+||++...                                
T Consensus       558 ~Glv~~~d~~~~---~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~--------------------------------  602 (781)
T 3v9f_A          558 EGLVCFPSARNF---DYQVFQRKEGLPNTHIRAISEDKNGNIWASTNT--------------------------------  602 (781)
T ss_dssp             TEEEEESCTTTC---CCEEECGGGTCSCCCCCEEEECSSSCEEEECSS--------------------------------
T ss_pred             CCceEEECCCCC---cEEEccccCCCCCceEEEEEECCCCCEEEEcCC--------------------------------
Confidence            343389987643   3333332  1222 2357899999999998643                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCc---ccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATY---ISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~---~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                            .+.+++++.+....+...+|..   +..-+.+...+|+||++...  -+.+++....
T Consensus       603 ------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~--Gl~~f~p~~~  657 (781)
T 3v9f_A          603 ------GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSIN--GLCFFNPDIA  657 (781)
T ss_dssp             ------CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETT--EEEEECSCCG
T ss_pred             ------ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCC--ceEEEChhhc
Confidence                  3788999877667776544531   21112223357999999854  4777776544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.41  E-value=2.1e-06  Score=73.20  Aligned_cols=100  Identities=13%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             EEEcCCC-cEEEEcC-CCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            5 VIEASDG-SLYFTVS-SKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         5 v~~~~dG-~iy~td~-~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      +++++|| ++|++.. ....+-        ...+.+.|+.||..++++........ |.+|+++|||++||++..  +.|
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v  327 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNV  327 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCE
T ss_pred             EEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeE
Confidence            7888885 6888864 100000        01235689999998887665555445 999999999999999985  899


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      ..|+.++..+.....+. .....|.+++++++|+
T Consensus       328 ~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          328 NVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             EEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            99998642112112211 2345799999999985

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.40  E-value=7.1e-06  Score=68.72  Aligned_cols=133  Identities=9%  Similarity=0.059  Sum_probs=93.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-C
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-G  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G  115 (225)
                      ...|++++.+....+.+.....    ++++++++.||+++.+..+|+++++++.   ..+.+...    +..+.+.|+ |
T Consensus       128 ~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---~~~~l~~~----~~~~~~~P~g~  196 (302)
T 3s25_A          128 ATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---SEALFYDC----NCYKPVVLDDT  196 (302)
T ss_dssp             CEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT---EEEEEECS----CEEEEEEEETT
T ss_pred             CceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC---CEEEEeCC----CccceeeecCC
Confidence            5689999987556666655432    5678999999999998899999999863   33333321    223445554 4


Q ss_pred             CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCC
Q 047259          116 SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFED  195 (225)
Q Consensus       116 ~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~  195 (225)
                      .||.++...                                   ...|.+.+.+|.-...+..  .. +   ..+.+.++
T Consensus       197 ~iy~t~~~~-----------------------------------~~~I~~~~ldG~~~~~Lt~--~~-~---~~~~~~g~  235 (302)
T 3s25_A          197 NVYYMDVNR-----------------------------------DNAIVHVNINNPNPVVLTE--AN-I---EHYNVYGS  235 (302)
T ss_dssp             EEEEEEGGG-----------------------------------TTEEEEECSSSCCCEECSC--SC-E---EEEEEETT
T ss_pred             EEEEEEcCC-----------------------------------CcEEEEEECCCCCeEEEeC--CC-c---ceEEECCC
Confidence            678877651                                   3589999999977666653  22 2   22566799


Q ss_pred             EEEEe-eCCCCeEEEEeCCCcccccCC
Q 047259          196 NLYMA-SIQSKFVGKLPLNTPEAELAP  221 (225)
Q Consensus       196 ~Lyv~-~~~~~~i~~~~~~~~~~~~~~  221 (225)
                      +||.+ +...+.|.++++++...+..+
T Consensus       236 ~Iy~~~~~~~~~i~~~~~DG~~r~~l~  262 (302)
T 3s25_A          236 LIFYQRGGDNPALCVVKNDGTGFKELA  262 (302)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred             EEEEEECCCCcEEEEEECCCCccEEee
Confidence            99997 455789999999998765543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.40  E-value=2.9e-06  Score=77.04  Aligned_cols=174  Identities=12%  Similarity=0.034  Sum_probs=107.3

Q ss_pred             CCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEE-e-cCCCEEEEEe--------
Q 047259           10 DGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVAL-S-KDENFVVVCE--------   76 (225)
Q Consensus        10 dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~-~-~dg~~Lyv~~--------   76 (225)
                      ||+ +|+++..                 +++|.++|.++.++..++  .....|.|+++ + ||+++||++.        
T Consensus       100 DG~~lfVnd~~-----------------~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~  162 (595)
T 1fwx_A          100 DGRFLFMNDKA-----------------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN  162 (595)
T ss_dssp             EEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             CCCEEEEEcCC-----------------CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCC
Confidence            664 8887775                 679999999887766643  34567999998 5 9999999994        


Q ss_pred             ---------CCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCCCC-EEEEeecCCc--hhhhhhhcCh------h
Q 047259           77 ---------SWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGS-FWVALIKMNQ--TGVRAIQSCP------D  137 (225)
Q Consensus        77 ---------~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~-l~v~~~~~~~--~~~~~~~~~~------~  137 (225)
                               ...+.+..+|.++     .++..+ ..++.|++++++++|+ +|+++.....  .+.+......      .
T Consensus       163 dg~~l~~~~~~~~~vtvID~~t-----~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~  237 (595)
T 1fwx_A          163 DGTNMEDVANYVNVFTAVDADK-----WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN  237 (595)
T ss_dssp             SSSSTTCGGGEEEEEEEEETTT-----TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE
T ss_pred             CCcccccccccCceEEEEECCC-----CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEee
Confidence                     3345788888753     222222 1446899999999987 5777655321  1111111000      1


Q ss_pred             HHHHHHhhhhhhhhhccCCCCcceEEEEECCC---CcE-EEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          138 KWKLLQAYPELINLLIPLGNDAGARIVKVDTH---GKI-IMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       138 ~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~---G~~-~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      +.+....+|.+-...       -+.|.++|..   +++ +..+..+..   +.-..+.+++.++|+++..++.|.+++..
T Consensus       238 ~~~~~~~v~~Gk~~~-------i~~V~VID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDGk~v~V~~~~s~~VsVid~~  307 (595)
T 1fwx_A          238 IAEIEKAIAAGDYQE-------LNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVT  307 (595)
T ss_dssp             HHHHHHHHHHTCSEE-------ETTEEEEECSGGGCCSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             ccceeEeccCCCeeE-------ECcEEEEeCcccCCceeEEEEecCCC---ceEEEEcCCCCEEEEeCCCCCeEEEEECc
Confidence            222222233331111       1237777775   444 555554211   11222345688999999999999999998


Q ss_pred             Cc
Q 047259          214 TP  215 (225)
Q Consensus       214 ~~  215 (225)
                      +.
T Consensus       308 ~~  309 (595)
T 1fwx_A          308 RF  309 (595)
T ss_dssp             GH
T ss_pred             cc
Confidence            65

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.27  E-value=2.4e-05  Score=73.25  Aligned_cols=145  Identities=14%  Similarity=0.203  Sum_probs=92.0

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-----c--cccceeEEecCCCEEEEEe
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-----F--YFANGVALSKDENFVVVCE   76 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~--~~pnGi~~~~dg~~Lyv~~   76 (225)
                      .+..+++|+||++..                   +.|+++++++++++.....     +  .....|..+++|+ ||++.
T Consensus       456 ~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt  515 (795)
T 4a2l_A          456 AILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGG  515 (795)
T ss_dssp             EEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEE
T ss_pred             EEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC-EEEEe
Confidence            355566666776633                   2478889877776654321     1  3456788899987 99988


Q ss_pred             CCCCEEEEEEecCCCCCceeEEec--cCCC----CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhh
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFIE--HLPG----GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELIN  150 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~~--~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  150 (225)
                      .  +.|++++.++.   .. .+..  ...+    ....|..|++|+||++...                           
T Consensus       516 ~--~Gl~~~~~~~~---~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~---------------------------  562 (795)
T 4a2l_A          516 E--EGLSVFKQEGL---DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE---------------------------  562 (795)
T ss_dssp             S--SCEEEEEEETT---EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS---------------------------
T ss_pred             C--CceEEEeCCCC---eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC---------------------------
Confidence            6  57999998753   22 2221  1112    2346888999999998743                           


Q ss_pred             hhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259          151 LLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       151 ~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                                 .+.++|++......+...+|-.-..+..++.+ +|+||+++  .+-|.+++..+
T Consensus       563 -----------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~  614 (795)
T 4a2l_A          563 -----------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPET  614 (795)
T ss_dssp             -----------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTT
T ss_pred             -----------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCC
Confidence                       47788887655556654333211234445544 79999998  46788887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.27  E-value=5.4e-05  Score=68.84  Aligned_cols=159  Identities=12%  Similarity=-0.025  Sum_probs=91.9

Q ss_pred             CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC-CC---eEEEEecC-ccccceeEEecCCCEEEEEe
Q 047259            3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE-LE---ETTVLHEG-FYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~---~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      ..+++.|||+ |+++..... + .        .-....|+.+|.+ +|   +.+.+..+ ......++|+|||+ +|++.
T Consensus       191 ~~~~~SpDG~~la~~~~~~~-~-~--------~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~  259 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHP-R-M--------PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVAT  259 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTT-C-C--------TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEE
T ss_pred             cCceECCCCCEEEEEECCCC-C-C--------CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEE
Confidence            4578889996 666543210 0 0        0013579999987 46   55565544 46678899999999 55554


Q ss_pred             CCCC--EEEEEEecCCCCCceeEEeccCCC------C--CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhh
Q 047259           77 SWKF--RCRRYWLKGPRQGRLESFIEHLPG------G--PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYP  146 (225)
Q Consensus        77 ~~~~--~I~~~~~~~~~~~~~~~~~~~~~g------~--Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p  146 (225)
                      ...+  +|++++++++   ..+.+......      .  ...+++.++|+++++... .                     
T Consensus       260 ~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~---------------------  314 (662)
T 3azo_A          260 DRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G---------------------  314 (662)
T ss_dssp             CTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S---------------------
T ss_pred             CCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C---------------------
Confidence            4445  8999887542   22222221100      1  246788888888776544 2                     


Q ss_pred             hhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEE-EEeCCEEEEeeCCCC---eEEEEeCCC
Q 047259          147 ELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSA-VEFEDNLYMASIQSK---FVGKLPLNT  214 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~-~~~~~~Lyv~~~~~~---~i~~~~~~~  214 (225)
                                   ...++++|.++..+..+..+.+.    ...+ ..+++.+++......   .|+++++.+
T Consensus       315 -------------~~~l~~~d~~~~~~~~l~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~  369 (662)
T 3azo_A          315 -------------AAVLGILDPESGELVDAAGPWTE----WAATLTVSGTRAVGVAASPRTAYEVVELDTVT  369 (662)
T ss_dssp             -------------SCEEEEEETTTTEEEECCSSCCE----EEEEEEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred             -------------ccEEEEEECCCCcEEEecCCCCe----EEEEEecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence                         45788888875545566554332    2333 445666555543332   566666544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.25  E-value=6.4e-05  Score=65.08  Aligned_cols=80  Identities=10%  Similarity=-0.045  Sum_probs=55.8

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ...|+.+|..+++...+.........++|+|||+.|+++...  ...|+.+++++.   ....+.. ..+....+++.++
T Consensus       202 ~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~---~~~~l~~-~~~~~~~~~~spd  277 (415)
T 2hqs_A          202 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---QIRQVTD-GRSNNTEPTWFPD  277 (415)
T ss_dssp             SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEECCC-CSSCEEEEEECTT
T ss_pred             CcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC---CEEeCcC-CCCcccceEECCC
Confidence            458999998888877766555567899999999988766543  456999998653   3333322 2333457899999


Q ss_pred             CCEEEE
Q 047259          115 GSFWVA  120 (225)
Q Consensus       115 G~l~v~  120 (225)
                      |+..+.
T Consensus       278 g~~l~~  283 (415)
T 2hqs_A          278 SQNLAF  283 (415)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            984443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.22  E-value=0.0001  Score=58.75  Aligned_cols=79  Identities=11%  Similarity=0.064  Sum_probs=51.0

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC--EEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF--RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ....||.++..+++...+.. ....+.++|+||++.|+++....+  +|+.++.++.   ....+. .....+..+++++
T Consensus       108 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~-~~~~~~~~~~~s~  182 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLT-HGEGRNDGPDYSP  182 (297)
T ss_dssp             SSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECC-CSSSCEEEEEECT
T ss_pred             CcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcc-cCCCccccceECC
Confidence            36789999987666555433 334788999999998886665555  5555555432   232222 2334567899999


Q ss_pred             CCCEEE
Q 047259          114 DGSFWV  119 (225)
Q Consensus       114 ~G~l~v  119 (225)
                      +|+..+
T Consensus       183 dg~~l~  188 (297)
T 2ojh_A          183 DGRWIY  188 (297)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            998443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.21  E-value=3.1e-05  Score=72.53  Aligned_cols=144  Identities=12%  Similarity=0.152  Sum_probs=90.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-----cCc--cccceeEEecCCCEEEEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-----EGF--YFANGVALSKDENFVVVC   75 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-----~~~--~~pnGi~~~~dg~~Lyv~   75 (225)
                      +++..+++|+||++...                   .|++++.+++++ ...     .++  ...+.|..+++|+ ||++
T Consensus       501 ~~i~~d~~g~lWigt~~-------------------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~-lWig  559 (795)
T 4a2l_A          501 TTLFRDSHKRLWIGGEE-------------------GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGI-IWVG  559 (795)
T ss_dssp             EEEEECTTCCEEEEESS-------------------CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSC-EEEE
T ss_pred             EEEEECCCCCEEEEeCC-------------------ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCC-EEEE
Confidence            34667778888887442                   467777765555 321     111  2346788889987 9998


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCCCCCC----ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLPGGPD----NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL  151 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd----~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  151 (225)
                      ...  .|.+|++++.   ..+.+. ...+.|+    .|..|++|+||++...                            
T Consensus       560 T~~--Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~----------------------------  605 (795)
T 4a2l_A          560 TRE--GFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNR----------------------------  605 (795)
T ss_dssp             ESS--CEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETT----------------------------
T ss_pred             eCC--CceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCC----------------------------
Confidence            764  7999997642   333332 2234454    4889999999998843                            


Q ss_pred             hccCCCCcceEEEEECCCCcEEEEEECCCCCc---ccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          152 LIPLGNDAGARIVKVDTHGKIIMDFNDPNATY---ISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       152 ~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~---~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                                .+.+++++......+...+|-.   +...+.+...+|.||+++..  -+.+++..
T Consensus       606 ----------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~--Gl~~~~p~  658 (795)
T 4a2l_A          606 ----------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGIN--GITTFRPE  658 (795)
T ss_dssp             ----------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETT--EEEEECGG
T ss_pred             ----------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCC--ceEEEcHH
Confidence                      5788998866666676544431   21112223357999999754  46666644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.19  E-value=0.0001  Score=67.45  Aligned_cols=140  Identities=17%  Similarity=0.139  Sum_probs=86.8

Q ss_pred             CCcEEEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEEeCCC----CEEEEEEecCCCCCceeEEec-cCCC---
Q 047259           36 PHGQLLKYDPELEETTVLHE---GFYFANGVALSKDENFVVVCESWK----FRCRRYWLKGPRQGRLESFIE-HLPG---  104 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~---~~~~pnGi~~~~dg~~Lyv~~~~~----~~I~~~~~~~~~~~~~~~~~~-~~~g---  104 (225)
                      ....|+.+|.++++...+..   ....+..++|+|||+.|+++....    ..|+.++++++  .....+.. ....   
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g--~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG--RFVRTLFVETDKHYVE  310 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC--CEEEEEEEEECSSCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC--ceeeEEEEccCCCeEC
Confidence            45789999998787666542   234567899999999888865432    48888887642  02222221 1111   


Q ss_pred             CCCceEECC--CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCC
Q 047259          105 GPDNINLAP--DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNAT  182 (225)
Q Consensus       105 ~Pd~i~~d~--~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~  182 (225)
                      ....+++.+  +|+++++....                                  ....|+.++.+|+.+..+..... 
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~----------------------------------g~~~l~~~~~~~~~~~~l~~~~~-  355 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRD----------------------------------GWNHLYLYDTTGRLIRQVTKGEW-  355 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTT----------------------------------SSCEEEEEETTSCEEEECCCSSS-
T ss_pred             ccCCceeecCCCCEEEEEEccC----------------------------------CccEEEEEECCCCEEEecCCCCe-
Confidence            236789999  99855443221                                  14578888877776666654222 


Q ss_pred             cccceeE-EEE--eCCEEEEeeCCCC----eEEEEeCCCc
Q 047259          183 YISFVTS-AVE--FEDNLYMASIQSK----FVGKLPLNTP  215 (225)
Q Consensus       183 ~~~~~t~-~~~--~~~~Lyv~~~~~~----~i~~~~~~~~  215 (225)
                         .... +..  +++.||++....+    .|+++++.+.
T Consensus       356 ---~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          356 ---EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             ---CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             ---EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence               1222 222  3567888877655    7888887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.18  E-value=0.0002  Score=59.55  Aligned_cols=132  Identities=13%  Similarity=0.064  Sum_probs=82.8

Q ss_pred             CcEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .|.|..+|..+++......+. ...+.++|+||++ ++++-+..+.|..+++...  .....+. ...+....+++.++|
T Consensus       185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~--~~~~~~~-~h~~~v~~~~~sp~~  260 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA--NLAGTLS-GHASWVLNVAFCPDD  260 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC--CEEEEEC-CCSSCEEEEEECTTS
T ss_pred             CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc--ceeEEEc-CCCCceEEEEECCCC
Confidence            678888898777665545443 3458999999998 5566667788999998642  1122222 222335678999999


Q ss_pred             CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe-
Q 047259          116 SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF-  193 (225)
Q Consensus       116 ~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~-  193 (225)
                      .++++...                                    .+.|...|. .++.+..+....+    .+..+... 
T Consensus       261 ~~l~s~s~------------------------------------D~~v~iwd~~~~~~~~~~~~h~~----~v~~v~~s~  300 (321)
T 3ow8_A          261 THFVSSSS------------------------------------DKSVKVWDVGTRTCVHTFFDHQD----QVWGVKYNG  300 (321)
T ss_dssp             SEEEEEET------------------------------------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECT
T ss_pred             CEEEEEeC------------------------------------CCcEEEEeCCCCEEEEEEcCCCC----cEEEEEECC
Confidence            98777655                                    334555554 3666666654333    24455543 


Q ss_pred             CCEEEEeeCCCCeEEEEeC
Q 047259          194 EDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       194 ~~~Lyv~~~~~~~i~~~~~  212 (225)
                      ++...++....+.|..++.
T Consensus       301 ~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TSSEEEEEETTCCEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEeC
Confidence            4555555556667766654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.18  E-value=2.6e-05  Score=70.89  Aligned_cols=113  Identities=15%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC------CeEEEEe-cCccccceeEEecCCCEEEE
Q 047259            3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL------EETTVLH-EGFYFANGVALSKDENFVVV   74 (225)
Q Consensus         3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------~~~~~~~-~~~~~pnGi~~~~dg~~Lyv   74 (225)
                      .++++.|||+ |+++..... +       .........|+.+|.++      ++.+.+. .+......++|||||++|++
T Consensus       133 ~~~~~spDg~~l~~~~~~~~-~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~  204 (662)
T 3azo_A          133 ADPVLLPERGEVWCMAEEFT-G-------EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVW  204 (662)
T ss_dssp             EEEEEETTTTEEEEEEEEEC-S-------SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEE
T ss_pred             cCcEECCCCCEEEEEEeccc-C-------CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEE
Confidence            3577888885 555533200 0       00012346899999887      6777776 65667788999999998876


Q ss_pred             EeCC-------CCEEEEEEecC-CCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           75 CESW-------KFRCRRYWLKG-PRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        75 ~~~~-------~~~I~~~~~~~-~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +...       ...|+.+++++ +..+..+.+..........+++.+||++|++...
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~  261 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR  261 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC
Confidence            6543       25899999873 2122343443322344567899999997765543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.18  E-value=0.00015  Score=64.37  Aligned_cols=133  Identities=13%  Similarity=0.120  Sum_probs=81.1

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      .+.|..||.....+..+...-....+++++||++.| ++...++.|..++.++.   ....+. ........+++.++|+
T Consensus       406 d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~d~~v~~w~~~~~---~~~~~~-~~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          406 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSC
T ss_pred             CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEE-EEEcCCCEEEEEECCCC---EEEEEc-CCCCCEEEEEEcCCCC
Confidence            567777886533334444444556789999999855 45556678888887542   223332 2233456899999999


Q ss_pred             EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CC
Q 047259          117 FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-ED  195 (225)
Q Consensus       117 l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~  195 (225)
                      +.++...                                    .+.|...|.+|+.+..+....+    .++.++.. ++
T Consensus       481 ~las~~~------------------------------------d~~i~iw~~~~~~~~~~~~h~~----~v~~l~~s~dg  520 (577)
T 2ymu_A          481 TIASASD------------------------------------DKTVKLWNRNGQLLQTLTGHSS----SVRGVAFSPDG  520 (577)
T ss_dssp             EEEEEET------------------------------------TSEEEEEETTSCEEEEEECCSS----CEEEEEECTTS
T ss_pred             EEEEEeC------------------------------------CCEEEEEcCCCCEEEEEeCCCC----CEEEEEEcCCC
Confidence            8887655                                    3456666777887777765433    24444442 44


Q ss_pred             EEEEeeCCCCeEEEEeCCC
Q 047259          196 NLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       196 ~Lyv~~~~~~~i~~~~~~~  214 (225)
                      ++.++......|..+++++
T Consensus       521 ~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          521 QTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SCEEEEETTSEEEEECTTS
T ss_pred             CEEEEEECcCEEEEEeCCC
Confidence            4444444556666666543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.16  E-value=0.00028  Score=57.61  Aligned_cols=130  Identities=12%  Similarity=0.030  Sum_probs=82.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      .|.|..+|..+++.............++++|+++.|+++. ..+.|..+++...   ....+. ...+....+++.++|+
T Consensus       204 dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~---~~~~~~-~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP---DKYQLH-LHESCVLSLKFAYCGK  278 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS---CEEEEC-CCSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCC---CeEEEc-CCccceeEEEECCCCC
Confidence            6788899987776655555556678999999999666554 5678999998652   222222 2334567899999999


Q ss_pred             EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe-C
Q 047259          117 FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-E  194 (225)
Q Consensus       117 l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~  194 (225)
                      ++++...                                    .+.|..++.+ ++.+...... +    .++.+... +
T Consensus       279 ~l~~~~~------------------------------------dg~i~~~~~~~~~~~~~~~~~-~----~v~~~~~s~~  317 (337)
T 1gxr_A          279 WFVSTGK------------------------------------DNLLNAWRTPYGASIFQSKES-S----SVLSCDISVD  317 (337)
T ss_dssp             EEEEEET------------------------------------TSEEEEEETTTCCEEEEEECS-S----CEEEEEECTT
T ss_pred             EEEEecC------------------------------------CCcEEEEECCCCeEEEEecCC-C----cEEEEEECCC
Confidence            8777655                                    4566666654 5655444432 2    24445442 4


Q ss_pred             CEEEEeeCCCCeEEEEeC
Q 047259          195 DNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       195 ~~Lyv~~~~~~~i~~~~~  212 (225)
                      +.++++....+.|..+++
T Consensus       318 ~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          318 DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEecCCCeEEEEEE
Confidence            444454445677766653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.12  E-value=0.00021  Score=59.26  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--------------------------CCEEEEEEecCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--------------------------KFRCRRYWLKGP   90 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--------------------------~~~I~~~~~~~~   90 (225)
                      ...||.++.++++...+..... ...++|+|||+.|+++...                          ...|++++++++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            4579999988787776654444 7899999999988777532                          367888888653


Q ss_pred             CCCce-eEEeccCCCCCCceEECCCCCEEEEe
Q 047259           91 RQGRL-ESFIEHLPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        91 ~~~~~-~~~~~~~~g~Pd~i~~d~~G~l~v~~  121 (225)
                         .. +.+..  + ....+++.++| ++++.
T Consensus       163 ---~~~~~l~~--~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          163 ---EVIEEFEK--P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ---EEEEEEEE--E-TTCEEEEETTE-EEEEE
T ss_pred             ---eEEeeecC--C-CcccccCCCCe-EEEEE
Confidence               33 33332  3 46788999999 65554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.11  E-value=0.00021  Score=56.90  Aligned_cols=94  Identities=16%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEEEecCc--cccceeEEecCCCEEEEEeC--
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTVLHEGF--YFANGVALSKDENFVVVCES--   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~--   77 (225)
                      ..+++.+||+.+++..                  .+.|+.+|..+ ++...+....  .....++|+|||+.|+++..  
T Consensus        45 ~~~~~spdg~~l~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  106 (297)
T 2ojh_A           45 EAPNWSPDGKYLLLNS------------------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE  106 (297)
T ss_dssp             EEEEECTTSSEEEEEE------------------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred             EeeEECCCCCEEEEEc------------------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC
Confidence            4566777776444422                  46899999887 7666655443  45688999999998877763  


Q ss_pred             -CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEE
Q 047259           78 -WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWV  119 (225)
Q Consensus        78 -~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v  119 (225)
                       ...+|+.++.++.   ....+..  ......+++.++|+..+
T Consensus       107 ~~~~~l~~~~~~~~---~~~~~~~--~~~~~~~~~spdg~~l~  144 (297)
T 2ojh_A          107 FGKSAIYLLPSTGG---TPRLMTK--NLPSYWHGWSPDGKSFT  144 (297)
T ss_dssp             TSSCEEEEEETTCC---CCEECCS--SSSEEEEEECTTSSEEE
T ss_pred             CCcceEEEEECCCC---ceEEeec--CCCccceEECCCCCEEE
Confidence             3578888887652   2222221  12245678999998443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.09  E-value=0.00029  Score=62.48  Aligned_cols=127  Identities=13%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      .+.|..+|.....+..+.........++++||+++| ++-...+.|..++.++.   ....+.. .......+++.++|+
T Consensus       447 d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~l-as~~~d~~i~iw~~~~~---~~~~~~~-h~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          447 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQ---LLQTLTG-HSSSVRGVAFSPDGQ  521 (577)
T ss_dssp             TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEE-EEEETTSEEEEEETTSC---EEEEEEC-CSSCEEEEEECTTSS
T ss_pred             CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEEcCCCC---EEEEEeC-CCCCEEEEEEcCCCC
Confidence            567777887544444444445566899999999854 55556778888886542   2333332 233456899999999


Q ss_pred             EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CC
Q 047259          117 FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-ED  195 (225)
Q Consensus       117 l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~  195 (225)
                      +.++...                                    .+.|...|.+|+.+..+....+    .++.+.+. ++
T Consensus       522 ~l~s~~~------------------------------------dg~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg  561 (577)
T 2ymu_A          522 TIASASD------------------------------------DKTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDG  561 (577)
T ss_dssp             CEEEEET------------------------------------TSEEEEECTTSCEEEEEECCSS----CEEEEEECTTS
T ss_pred             EEEEEEC------------------------------------cCEEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCC
Confidence            7776655                                    4567777888988888875433    35555553 45


Q ss_pred             EEEEeeCCCCeEE
Q 047259          196 NLYMASIQSKFVG  208 (225)
Q Consensus       196 ~Lyv~~~~~~~i~  208 (225)
                      +.+++......|.
T Consensus       562 ~~l~s~~~D~~i~  574 (577)
T 2ymu_A          562 QTIASASSDKTVK  574 (577)
T ss_dssp             SCEEEEETTSCEE
T ss_pred             CEEEEEeCCCEEE
Confidence            5555544444443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.08  E-value=0.00028  Score=59.34  Aligned_cols=101  Identities=18%  Similarity=0.010  Sum_probs=63.8

Q ss_pred             CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccc-eeEEecCCCEEEEEeCCCC
Q 047259            3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFAN-GVALSKDENFVVVCESWKF   80 (225)
Q Consensus         3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pn-Gi~~~~dg~~Lyv~~~~~~   80 (225)
                      +.+++.|||+ |+|+...               .+..+||.+|.++++.+.+..+..... +++|+|||+.|+++... .
T Consensus        39 ~~~~~SpDg~~l~~~~~~---------------~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~  102 (388)
T 3pe7_A           39 YQKCFTRDGSKLLFGGAF---------------DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-R  102 (388)
T ss_dssp             TSCCBCTTSCEEEEEECT---------------TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-T
T ss_pred             cCccCCCCCCEEEEEEcC---------------CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-C
Confidence            3467788885 5555432               124479999998888877765544443 78999999988877753 6


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCC--CceEECCCCCEEEEee
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGP--DNINLAPDGSFWVALI  122 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~P--d~i~~d~~G~l~v~~~  122 (225)
                      .|++++++++   ..+.+.....+..  .....+++|+++++..
T Consensus       103 ~l~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  143 (388)
T 3pe7_A          103 NLMRVDLATL---EENVVYQVPAEWVGYGTWVANSDCTKLVGIE  143 (388)
T ss_dssp             EEEEEETTTC---CEEEEEECCTTEEEEEEEEECTTSSEEEEEE
T ss_pred             eEEEEECCCC---cceeeeechhhcccccceeECCCCCeecccc
Confidence            8999998753   3333332111111  1133588898777543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.08  E-value=0.00045  Score=56.44  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             CCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..+|..+++....... ......++++|+++.| ++-...+.|..+++...  .....+..........++++++
T Consensus       127 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~  203 (312)
T 4ery_A          127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPN  203 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTC--CEEEEECCSSCCCEEEEEECTT
T ss_pred             CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCCC--ceeeEEeccCCCceEEEEECCC
Confidence            367788888876665444433 3445789999999844 55556788999998642  1122222111122346889999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |++.++...                                    .+.|..+|.. ++.+..+.................
T Consensus       204 ~~~l~~~~~------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          204 GKYILAATL------------------------------------DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             SSEEEEEET------------------------------------TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             CCEEEEEcC------------------------------------CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            998777655                                    3456666654 666666654333211111111223


Q ss_pred             CCEEEEeeCCCCeEEEEeCCCc
Q 047259          194 EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       194 ~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ++.++++....+.|..+++...
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTC
T ss_pred             CCcEEEEECCCCEEEEEECCCc
Confidence            4555566666677777776543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.07  E-value=0.00014  Score=64.44  Aligned_cols=74  Identities=16%  Similarity=0.290  Sum_probs=50.1

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhc-ccCCCCcEEEEEeCCCC--------------------eEEEEecCccccc
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDL-VEGKPHGQLLKYDPELE--------------------ETTVLHEGFYFAN   61 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~-~~~~~~g~v~~~d~~~~--------------------~~~~~~~~~~~pn   61 (225)
                      ..|++++||.|||+...... ........ -.....|.|+|++++..                    ..++.+.++..|.
T Consensus       142 ~~l~fgpDG~LYv~~Gd~~~-~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~  220 (463)
T 2wg3_C          142 GQLLFGPDGFLYIILGDGMI-TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPG  220 (463)
T ss_dssp             EEEEECTTSCEEEEECCTTC-CHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCC
T ss_pred             CcEeECCCCcEEEEeCCCCC-CCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcc
Confidence            46899999999999665211 10000000 01345899999999742                    2356778899999


Q ss_pred             eeEEecC-----CC-EEEEEeC
Q 047259           62 GVALSKD-----EN-FVVVCES   77 (225)
Q Consensus        62 Gi~~~~d-----g~-~Lyv~~~   77 (225)
                      |++|+|+     |+ ++|++|.
T Consensus       221 gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          221 RCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             BEEEESSCSSTTCSEEEEEECC
T ss_pred             eEEECCCCCCcccceEEEeccc
Confidence            9999997     33 6788886

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.06  E-value=5.4e-05  Score=68.35  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             cccceeEEecCCCEEEEEeCCC---------------------CEEEEEEecCC----CCCceeEEecc-C---------
Q 047259           58 YFANGVALSKDENFVVVCESWK---------------------FRCRRYWLKGP----RQGRLESFIEH-L---------  102 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~---------------------~~I~~~~~~~~----~~~~~~~~~~~-~---------  102 (225)
                      ..|.+|+++|..+.||++-+++                     ++|+|+..++.    ....+++|+.. .         
T Consensus       384 dRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~  463 (592)
T 4a9v_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             cCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccccc
Confidence            3689999999666799997642                     78999998642    12234555420 0         


Q ss_pred             -----------CCCCCceEECCCCCEEE-EeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-
Q 047259          103 -----------PGGPDNINLAPDGSFWV-ALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-  169 (225)
Q Consensus       103 -----------~g~Pd~i~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-  169 (225)
                                 -..||+|++|++|+||+ ++......        ..+.               ..  ....|++++++ 
T Consensus       464 ~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~--------g~~~---------------~~--gnn~v~~~dp~t  518 (592)
T 4a9v_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNA--------GDFA---------------GM--GNNQMLCADPAT  518 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCS--------GGGT---------------TC--CSCEEEEECTTT
T ss_pred             cCccCccccCccCCCCceEECCCCCEEEEeCCCcCcc--------cccc---------------cc--CCceEEEEeCCC
Confidence                       12599999999999999 66542210        0000               01  14589999995 


Q ss_pred             CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCC
Q 047259          170 GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQ  203 (225)
Q Consensus       170 G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~  203 (225)
                      |++...+..|.+.   .+++++.  ++.+|||+-..
T Consensus       519 Gel~~fl~~P~~a---EpnGiafSPD~ktLfV~vQH  551 (592)
T 4a9v_A          519 GEIRRFMVGPIGC---EVTGISFSPDQKTLFVGIQH  551 (592)
T ss_dssp             CCEEEEEECCTTC---EEEEEEECTTSSEEEEEEES
T ss_pred             CeEEEEEeCCCCc---cccCCEECCCCCEEEEEEeC
Confidence            8888777777653   5777776  46899998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.05  E-value=0.00052  Score=55.91  Aligned_cols=82  Identities=12%  Similarity=0.095  Sum_probs=55.3

Q ss_pred             CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .|.|..+|..+++...... .......++++|+++.|+.+ ...+.|..+++...   ...... ...+....+++.++|
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~  236 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTG  236 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTS
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCC
Confidence            5778888887666554443 34567899999999865544 46789999998642   221111 133446789999999


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      +++++...
T Consensus       237 ~~l~~~~~  244 (337)
T 1gxr_A          237 EWLAVGME  244 (337)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEEcC
Confidence            87776654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.04  E-value=0.0011  Score=55.09  Aligned_cols=83  Identities=12%  Similarity=0.078  Sum_probs=54.5

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .|.|..++..+++..... ........++++||++.| ++-...+.|..+++...  .....+. ........+++.++|
T Consensus       143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-asg~~dg~i~iwd~~~~--~~~~~~~-~h~~~v~~l~~spd~  218 (321)
T 3ow8_A          143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL-ASGAIDGIINIFDIATG--KLLHTLE-GHAMPIRSLTFSPDS  218 (321)
T ss_dssp             TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTT--EEEEEEC-CCSSCCCEEEECTTS
T ss_pred             CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE-EEEcCCCeEEEEECCCC--cEEEEEc-ccCCceeEEEEcCCC
Confidence            677888887666544433 334557889999999955 45556788999998642  1122222 222345789999999


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      +++++...
T Consensus       219 ~~l~s~s~  226 (321)
T 3ow8_A          219 QLLVTASD  226 (321)
T ss_dssp             CEEEEECT
T ss_pred             CEEEEEcC
Confidence            98777655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.03  E-value=0.00074  Score=56.72  Aligned_cols=156  Identities=10%  Similarity=-0.040  Sum_probs=98.2

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-------ccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-------FYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~pnGi~~~~dg~~Lyv   74 (225)
                      ...+++.++| ++++-..                 .|.|..||..+++.......       ......++++|+++.|++
T Consensus       189 i~~~~~~~~~-~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFN-----------------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             CCEEEECTTS-EEEEECT-----------------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             ceEEEECCCc-eEEEEeC-----------------CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence            3567778888 5555443                 67899999876765554444       556789999999985554


Q ss_pred             EeCCC---CEEEEEEecCCCCCceeEEecc------------CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHH
Q 047259           75 CESWK---FRCRRYWLKGPRQGRLESFIEH------------LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKW  139 (225)
Q Consensus        75 ~~~~~---~~I~~~~~~~~~~~~~~~~~~~------------~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r  139 (225)
                      + ...   +.|..+++...  .....+...            .......+++.++|+++++...                
T Consensus       251 ~-~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------  311 (397)
T 1sq9_A          251 A-HDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----------------  311 (397)
T ss_dssp             E-EEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----------------
T ss_pred             E-ecCCCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----------------
Confidence            4 455   78999998642  122222210            1233467899999988777655                


Q ss_pred             HHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEE------CC-----CCCc------ccceeEEEEe-CC-----
Q 047259          140 KLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFN------DP-----NATY------ISFVTSAVEF-ED-----  195 (225)
Q Consensus       140 ~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~------~p-----~g~~------~~~~t~~~~~-~~-----  195 (225)
                                          .+.|..+|.. ++.+..+.      ..     .|..      -..++.+... ++     
T Consensus       312 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          312 --------------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             --------------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             --------------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence                                4566666654 77777777      21     0000      1235555554 44     


Q ss_pred             -----EEEEeeCCCCeEEEEeCCC
Q 047259          196 -----NLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       196 -----~Lyv~~~~~~~i~~~~~~~  214 (225)
                           .++++....+.|..+++.+
T Consensus       372 ~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          372 GADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cccccceEEEecCCCcEEEEEcCC
Confidence                 5667766778888887654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.02  E-value=0.00022  Score=65.61  Aligned_cols=104  Identities=19%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc----------------------
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY----------------------   58 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~----------------------   58 (225)
                      ++.+++.+||+ |+++.....            +.....|+.+|..+++.+.+.....                      
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~------------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDS------------DRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA  106 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSS------------CTTEEEEEEEETTTCCEEEEECGGGTC--------------------
T ss_pred             CCCceEecCCCEEEEEeccCC------------CCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc
Confidence            45789999997 565544200            0113489999988888776654322                      


Q ss_pred             ---ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEE
Q 047259           59 ---FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA  120 (225)
Q Consensus        59 ---~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~  120 (225)
                         ....++|||||++|+++..  +.|+.++++++.......+.. ..+....+++.+||+..+.
T Consensus       107 ~~~~v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~  168 (741)
T 2ecf_A          107 AMTGIVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSF  168 (741)
T ss_dssp             CCEESCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEE
T ss_pred             cccCcceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEE
Confidence               2478999999998887765  799999987530002222221 2234567888888884443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.00038  Score=58.84  Aligned_cols=158  Identities=8%  Similarity=0.010  Sum_probs=101.9

Q ss_pred             CcEEEcCC-CcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-------ccccceeEEecCCCEEEE
Q 047259            3 NDVIEASD-GSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-------FYFANGVALSKDENFVVV   74 (225)
Q Consensus         3 ndv~~~~d-G~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~pnGi~~~~dg~~Lyv   74 (225)
                      ..+++.++ +.++++-..                 .|.|..+|..+++.......       ......++|+|++..+++
T Consensus       169 ~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          169 ISLAWNQSLAHVFASAGS-----------------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             CEEEECSSCTTEEEEESS-----------------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             eEEEeCCCCCcEEEEEcC-----------------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence            45677777 466666443                 67888889876665544433       355789999999855666


Q ss_pred             EeCCCC---EEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhh
Q 047259           75 CESWKF---RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELIN  150 (225)
Q Consensus        75 ~~~~~~---~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  150 (225)
                      +....+   .|..+++.... .....+..........+++.+ +|+++++...                           
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---------------------------  283 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR---------------------------  283 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEES---------------------------
T ss_pred             EEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeC---------------------------
Confidence            666666   89999986421 111122101223456889998 7887777655                           


Q ss_pred             hhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe-CC-EEEEeeCCCCeEEEEeCCCcccc
Q 047259          151 LLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF-ED-NLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       151 ~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~-~~-~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                               .+.|...|.+ ++.+..+....+.    ++.+... ++ .++++....+.|..+++.....+
T Consensus       284 ---------dg~v~~wd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          284 ---------DNTVLLWNPESAEQLSQFPARGNW----CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             ---------SSEEEEECSSSCCEEEEEECSSSC----CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             ---------CCCEEEeeCCCCccceeecCCCCc----eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence                     4567777764 7777777754432    3444443 34 67777777889999988776543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.00  E-value=0.0009  Score=54.63  Aligned_cols=100  Identities=15%  Similarity=0.034  Sum_probs=64.3

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.+++.++|+..++-..                 .|.|..++..+++......+ ......++|+||++.| ++-...+.
T Consensus        27 ~~~~~s~~~~~l~s~~~-----------------dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~   88 (312)
T 4ery_A           27 SSVKFSPNGEWLASSSA-----------------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL-VSASDDKT   88 (312)
T ss_dssp             EEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSE
T ss_pred             EEEEECCCCCEEEEeeC-----------------CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE-EEECCCCE
Confidence            35677777776666443                 56777778766666555443 3456889999999854 55556789


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      |..++++..  .....+. ........+++.++|+++++...
T Consensus        89 i~vwd~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~  127 (312)
T 4ery_A           89 LKIWDVSSG--KCLKTLK-GHSNYVFCCNFNPQSNLIVSGSF  127 (312)
T ss_dssp             EEEEETTTC--CEEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEECCCC--cEEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            999988642  1122222 22233457788899888777655

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.0011  Score=54.67  Aligned_cols=137  Identities=12%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC----CCEEEEEEecCCC-CCcee--------EEeccCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW----KFRCRRYWLKGPR-QGRLE--------SFIEHLP  103 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~----~~~I~~~~~~~~~-~~~~~--------~~~~~~~  103 (225)
                      .|.|..+|..+++.............++++|+++.|+++...    .+.|..+++.... .....        .+. ...
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~  173 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THE  173 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCT
T ss_pred             CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCc
Confidence            678888888777766555555677899999999966665543    2788888886421 11111        111 111


Q ss_pred             C--CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--CcEEEEEECC
Q 047259          104 G--GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--GKIIMDFNDP  179 (225)
Q Consensus       104 g--~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G~~~~~~~~p  179 (225)
                      +  ....++++++|+++++...                                    .+.|..+|..  ++.+..+...
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~------------------------------------dg~i~i~d~~~~~~~~~~~~~~  217 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHK------------------------------------DGKISKYDVSNNYEYVDSIDLH  217 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEET------------------------------------TSEEEEEETTTTTEEEEEEECC
T ss_pred             CccceeEEEEcCCCCEEEEEcC------------------------------------CCEEEEEECCCCcEeEEEEecC
Confidence            1  3567888888887766544                                    3456666654  5666666643


Q ss_pred             CCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259          180 NATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       180 ~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+    .++.+... ++.++++....+.|..+++..
T Consensus       218 ~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          218 EK----SISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             SS----CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CC----ceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence            33    24444442 444444445567777777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.96  E-value=0.00077  Score=62.16  Aligned_cols=145  Identities=10%  Similarity=-0.069  Sum_probs=82.5

Q ss_pred             cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---------------CCEEEEEEecCCCCCceeEEecc-
Q 047259           38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW---------------KFRCRRYWLKGPRQGRLESFIEH-  101 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---------------~~~I~~~~~~~~~~~~~~~~~~~-  101 (225)
                      ..|+.+|..+|+............+++|+|||+.||++...               ..+|+++++.++......++... 
T Consensus       151 ~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          151 VTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            37999998888765532222225689999999988877643               23599998865321112222211 


Q ss_pred             CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-------Cc-EE
Q 047259          102 LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-------GK-II  173 (225)
Q Consensus       102 ~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-------G~-~~  173 (225)
                      .+....++++++||+..+.......                             .  ....|..+|.+       |+ ..
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~-----------------------------~--~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGC-----------------------------D--PVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSS-----------------------------S--SCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccC-----------------------------C--CccEEEEEECcccccccCCccce
Confidence            1222347899999984433322100                             0  03466666654       32 23


Q ss_pred             EEEECCCCCcccceeEEEEeCCEEEEeeCCC---CeEEEEeCCCcc
Q 047259          174 MDFNDPNATYISFVTSAVEFEDNLYMASIQS---KFVGKLPLNTPE  216 (225)
Q Consensus       174 ~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~---~~i~~~~~~~~~  216 (225)
                      ..+..+.+..   ...+..++++||+.+...   .+|.++++.+..
T Consensus       280 ~~l~~~~~~~---~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          280 VKLIDNFEGE---YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             EEEECSSSSC---EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEeeCCCCcE---EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            4444433221   222445688888887543   479999887653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.96  E-value=9e-05  Score=62.39  Aligned_cols=169  Identities=8%  Similarity=-0.059  Sum_probs=90.6

Q ss_pred             CcEEEcC-CCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc--cccceeEEecCCCEE-EEEeC
Q 047259            3 NDVIEAS-DGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF--YFANGVALSKDENFV-VVCES   77 (225)
Q Consensus         3 ndv~~~~-dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~L-yv~~~   77 (225)
                      +++++.| ||+ |.++.....            .....+|+.+|.++++.+.+....  .....++|+|||+.| |++..
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~------------~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (388)
T 3pe7_A          191 GHPIYRPYDDSTVAFCHEGPH------------DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL  258 (388)
T ss_dssp             EEEEEETTEEEEEEEEECSCT------------TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             cccEECCCCCCEEEEEEecCC------------CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC
Confidence            4677788 775 544433210            112558999998766666655433  234578999999977 55654


Q ss_pred             CCC---EEEEEEecCCCCCceeEEeccCCC------CCCceEECCCCCE-EEEeecCCchhhhhhhcChhHHHHHHhhhh
Q 047259           78 WKF---RCRRYWLKGPRQGRLESFIEHLPG------GPDNINLAPDGSF-WVALIKMNQTGVRAIQSCPDKWKLLQAYPE  147 (225)
Q Consensus        78 ~~~---~I~~~~~~~~~~~~~~~~~~~~~g------~Pd~i~~d~~G~l-~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~  147 (225)
                      ...   .|+.++++++   ..+.+.. .++      .++++++.+||+. +++......    +                
T Consensus       259 ~~~~~~~l~~~d~~~g---~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----~----------------  314 (388)
T 3pe7_A          259 KGSPDRFIYSADPETL---ENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG----Y----------------  314 (388)
T ss_dssp             TTCCCEEEEEECTTTC---CEEEEEE-ECCEEEEEECTTSSEEEEEECCC------------------------------
T ss_pred             CCCCcceEEEEecCCC---ceEEEEc-CCCceeeeecCCCCeEccCCCcceeEeeeccc----c----------------
Confidence            332   4999998753   3333322 222      2667777777763 322211000    0                


Q ss_pred             hhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCccc--------ceeEEE--EeCCEEEEeeC--CCCeEEEEeCCCc
Q 047259          148 LINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYIS--------FVTSAV--EFEDNLYMASI--QSKFVGKLPLNTP  215 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~--------~~t~~~--~~~~~Lyv~~~--~~~~i~~~~~~~~  215 (225)
                            ...  ....|.++|.++.....+....+. ..        ....+.  +++.+|++++.  +...|++++++..
T Consensus       315 ------~~~--~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~  385 (388)
T 3pe7_A          315 ------KIE--NDPFLYVFNMKNGTQHRVARHDTS-WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPES  385 (388)
T ss_dssp             --------C--CCCEEEEEETTTTEEEEEEECCCC-CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGG
T ss_pred             ------ccC--CCCEEEEEeccCCceEEeccccCc-ccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChh
Confidence                  001  155788999886544455433331 00        112222  34668888774  4556777777654


Q ss_pred             c
Q 047259          216 E  216 (225)
Q Consensus       216 ~  216 (225)
                      .
T Consensus       386 ~  386 (388)
T 3pe7_A          386 V  386 (388)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.93  E-value=0.0009  Score=61.19  Aligned_cols=97  Identities=14%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      .++++.+|+.+.++.                   .+.|+.+|..+++...+.........++|+|||+.|+++  ..+.|
T Consensus        85 ~~~~~spd~~~~~~~-------------------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i  143 (706)
T 2z3z_A           85 FRTLDAGRGLVVLFT-------------------QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNL  143 (706)
T ss_dssp             EEEEETTTTEEEEEE-------------------TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEE
T ss_pred             eeEEECCCCeEEEEE-------------------CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeE
Confidence            456777776565552                   368999998888877776665668899999999988665  34789


Q ss_pred             EEEEecCC--CCCceeEEec-cCC-------------CCCCceEECCCCCEEEE
Q 047259           83 RRYWLKGP--RQGRLESFIE-HLP-------------GGPDNINLAPDGSFWVA  120 (225)
Q Consensus        83 ~~~~~~~~--~~~~~~~~~~-~~~-------------g~Pd~i~~d~~G~l~v~  120 (225)
                      +.+++++.  ..+....... ...             +.+.++++.+||+..+.
T Consensus       144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~  197 (706)
T 2z3z_A          144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAF  197 (706)
T ss_dssp             EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred             EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEE
Confidence            99998650  0012211111 111             11478999999984443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.92  E-value=0.00036  Score=64.14  Aligned_cols=135  Identities=16%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             cEEEEEeCCC-CeEEEEe---cCccccceeEEecCCCEEEEEeC----CCCEEEEEEecCCCCCceeEEec-cCCC---C
Q 047259           38 GQLLKYDPEL-EETTVLH---EGFYFANGVALSKDENFVVVCES----WKFRCRRYWLKGPRQGRLESFIE-HLPG---G  105 (225)
Q Consensus        38 g~v~~~d~~~-~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~----~~~~I~~~~~~~~~~~~~~~~~~-~~~g---~  105 (225)
                      ..|+.+|..+ ++...+.   ........++| |||+.|+++..    ....|+.++++++   ....... ...+   .
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---QQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC---CEEEEEEEECSSCCCC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC---ceEEEEEcCCCCcCCc
Confidence            3789999887 7765554   23456788999 99998887654    3457888887653   2322222 1211   2


Q ss_pred             CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCccc
Q 047259          106 PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYIS  185 (225)
Q Consensus       106 Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~  185 (225)
                      ...+++.+||+++++....                                  ....|+.++.+|+ ...+......   
T Consensus       339 ~~~~~~spdg~~~~~~~~~----------------------------------g~~~l~~~~~~~~-~~~l~~~~~~---  380 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERT----------------------------------GFQHLYRIDSKGK-AAALTHGNWS---  380 (741)
T ss_dssp             CSCCEECTTSCEEEEECTT----------------------------------SSCEEEEECSSSC-EEESCCSSSC---
T ss_pred             CCceEECCCCeEEEEecCC----------------------------------CccEEEEEcCCCC-eeeeeecceE---
Confidence            3589999999966554331                                  1357888888777 5555432222   


Q ss_pred             ceeEE---EEeCCEEEEeeCCC----CeEEEEeCCCc
Q 047259          186 FVTSA---VEFEDNLYMASIQS----KFVGKLPLNTP  215 (225)
Q Consensus       186 ~~t~~---~~~~~~Lyv~~~~~----~~i~~~~~~~~  215 (225)
                       ...+   .++++.||++....    .+|+.++.++.
T Consensus       381 -v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          381 -VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             -EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             -EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence             2222   22356777766543    35777776554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.90  E-value=0.00084  Score=57.01  Aligned_cols=139  Identities=11%  Similarity=0.077  Sum_probs=86.0

Q ss_pred             CcEEEEEeCCCCe--------EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEe-ccCCCCCC
Q 047259           37 HGQLLKYDPELEE--------TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFI-EHLPGGPD  107 (225)
Q Consensus        37 ~g~v~~~d~~~~~--------~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd  107 (225)
                      .|.|..||..++.        +..+.........++|+|+++.++++-..++.|..+++...  .....+. ....+...
T Consensus       103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--AAVLTLGPDVHPDTIY  180 (402)
T ss_dssp             TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--EEEEEECTTTCCSCEE
T ss_pred             CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--CccEEEecCCCCCceE
Confidence            5677777765542        22333344567899999998546667677789999998642  1122221 12233456


Q ss_pred             ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEE-ECCCCCccc
Q 047259          108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDF-NDPNATYIS  185 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~-~~p~g~~~~  185 (225)
                      .+++.++|+++++...                                    .+.|..+|.. ++.+..+ ....+.   
T Consensus       181 ~~~~~~~~~~l~~~~~------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~---  221 (402)
T 2aq5_A          181 SVDWSRDGALICTSCR------------------------------------DKRVRVIEPRKGTVVAEKDRPHEGT---  221 (402)
T ss_dssp             EEEECTTSSCEEEEET------------------------------------TSEEEEEETTTTEEEEEEECSSCSS---
T ss_pred             EEEECCCCCEEEEEec------------------------------------CCcEEEEeCCCCceeeeeccCCCCC---
Confidence            8899999987776655                                    4567777764 6777666 332222   


Q ss_pred             ceeEEEE-eCCEEEEee---CCCCeEEEEeCCCcc
Q 047259          186 FVTSAVE-FEDNLYMAS---IQSKFVGKLPLNTPE  216 (225)
Q Consensus       186 ~~t~~~~-~~~~Lyv~~---~~~~~i~~~~~~~~~  216 (225)
                      .++.+.. .++.++++.   .....|..+++....
T Consensus       222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             cceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            1333433 356666665   567888888877643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.88  E-value=0.0019  Score=54.75  Aligned_cols=141  Identities=10%  Similarity=0.017  Sum_probs=87.3

Q ss_pred             CcEEEEEeCCCCeEEEEe--c-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEE-eccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELEETTVLH--E-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESF-IEHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~--~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~-~~~~~g~Pd~i~~d  112 (225)
                      .|.|..+|..+++.....  . .......++|+||++.|+ +-...+.|..+++...  .....+ ..+....+..+++.
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~  229 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC-TSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFV  229 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE-EEETTSEEEEEETTTT--EEEEEEECSSCSSSCCEEEEC
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE-EEecCCcEEEEeCCCC--ceeeeeccCCCCCcceEEEEc
Confidence            678888898777665544  2 344568999999998554 4456789999998642  122222 11122236789999


Q ss_pred             CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-Cc-EEEEEECCCCCcccceeEE
Q 047259          113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GK-IIMDFNDPNATYISFVTSA  190 (225)
Q Consensus       113 ~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~-~~~~~~~p~g~~~~~~t~~  190 (225)
                      ++|+++++.+...                               .  .+.|..+|.. ++ .+.........   .+..+
T Consensus       230 ~~~~~l~~g~~~~-------------------------------~--d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~  273 (402)
T 2aq5_A          230 SEGKILTTGFSRM-------------------------------S--ERQVALWDTKHLEEPLSLQELDTSS---GVLLP  273 (402)
T ss_dssp             STTEEEEEEECTT-------------------------------C--CEEEEEEETTBCSSCSEEEECCCCS---SCEEE
T ss_pred             CCCcEEEEeccCC-------------------------------C--CceEEEEcCccccCCceEEeccCCC---ceeEE
Confidence            9999887764310                               0  4667777764 33 23344332211   23444


Q ss_pred             EE--eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          191 VE--FEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       191 ~~--~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      ..  ++..|+++....+.|..+++....
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            43  356787887778888888887654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.84  E-value=0.00088  Score=56.43  Aligned_cols=85  Identities=14%  Similarity=-0.006  Sum_probs=54.5

Q ss_pred             CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC-CCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP-GGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~-g~Pd~i~~d~~  114 (225)
                      .|.|..+|..+++......+ ....+.+++++++..++++-+..+.|..+++...  .....+..... ..+..+++.++
T Consensus       148 d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP--KPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS--SCEEECC----CCCEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc--ceeeeeecceeeccceeeeecCC
Confidence            67788888877776555443 4456889999999778888888899999998642  11122211111 23456788875


Q ss_pred             -CCEEEEeec
Q 047259          115 -GSFWVALIK  123 (225)
Q Consensus       115 -G~l~v~~~~  123 (225)
                       ++++++...
T Consensus       226 ~~~~l~sg~~  235 (344)
T 4gqb_B          226 QSEVFVFGDE  235 (344)
T ss_dssp             CTTEEEEEET
T ss_pred             CCcceEEecc
Confidence             456665544

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.84  E-value=0.00035  Score=63.58  Aligned_cols=119  Identities=13%  Similarity=0.096  Sum_probs=77.8

Q ss_pred             CccccceeEEecCCCEEEEEeCC---------------------CCEEEEEEecCCC----CCceeEEecc---------
Q 047259           56 GFYFANGVALSKDENFVVVCESW---------------------KFRCRRYWLKGPR----QGRLESFIEH---------  101 (225)
Q Consensus        56 ~~~~pnGi~~~~dg~~Lyv~~~~---------------------~~~I~~~~~~~~~----~~~~~~~~~~---------  101 (225)
                      .+..|.||.++|..+.+|++.+.                     .++|+|+.+++..    ....++|+-.         
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            34578999999855569999774                     2589999986421    1123333310         


Q ss_pred             ------------CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC
Q 047259          102 ------------LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH  169 (225)
Q Consensus       102 ------------~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~  169 (225)
                                  .-..||||++|++|+||++.=+.....-.+.                      ...  ...++..+++
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~----------------------~~g--nn~~~~~~~~  517 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFA----------------------GMG--NNQMLCADPA  517 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGT----------------------TTC--SCEEEEECTT
T ss_pred             ccccccccCCCCCccCCcceEECCCCCEEEEecCCCccccccc----------------------ccc--cceEEEEeCC
Confidence                        0125999999999999999755321110000                      011  4577888886


Q ss_pred             -CcEEEEEECCCCCcccceeEEEEe--CCEEEEee
Q 047259          170 -GKIIMDFNDPNATYISFVTSAVEF--EDNLYMAS  201 (225)
Q Consensus       170 -G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~  201 (225)
                       |++...+..|.|.   .+|++++.  +.+|||.-
T Consensus       518 ~g~~~rf~~~P~ga---E~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          518 TGEIRRFMVGPIGC---EVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             TCCEEEEEECCTTC---EEEEEEECTTSSEEEEEE
T ss_pred             CCeEEEEEeCCCCc---cCcCeeECCCCCEEEEEE
Confidence             8988888888775   57777763  57898874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.84  E-value=0.001  Score=55.94  Aligned_cols=151  Identities=13%  Similarity=0.043  Sum_probs=97.1

Q ss_pred             CcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec---CccccceeEEec-CCCEEEEEeC
Q 047259            3 NDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE---GFYFANGVALSK-DENFVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~---~~~~pnGi~~~~-dg~~Lyv~~~   77 (225)
                      +.+++.++| +++++-..                 .|.|..||..+++......   .......++|+| +++ ++++-+
T Consensus        77 ~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~  138 (383)
T 3ei3_B           77 TSLEWHPTHPTTVAVGSK-----------------GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN-QLFVSS  138 (383)
T ss_dssp             EEEEECSSCTTEEEEEEB-----------------TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE-EEEEEE
T ss_pred             EEEEECCCCCCEEEEEcC-----------------CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC-EEEEEe
Confidence            356777777 66666443                 5778888876665555443   345668999999 555 556666


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccC--CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHL--PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~--~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      ..+.|..+++.+.   ....+....  ......+++.++|++.++...                                
T Consensus       139 ~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------------  183 (383)
T 3ei3_B          139 IRGATTLRDFSGS---VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS--------------------------------  183 (383)
T ss_dssp             TTTEEEEEETTSC---EEEEEECCCCSSCCEEEEEEETTTTEEEEEET--------------------------------
T ss_pred             CCCEEEEEECCCC---ceEEEeccCCCCCCeEEEEECCCCCEEEEECC--------------------------------
Confidence            7789999998742   333333211  133567899999997776655                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCE-EEEeeCCCCeEEEEeCCC
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDN-LYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~-Lyv~~~~~~~i~~~~~~~  214 (225)
                          .+.|..+|.+++.+..+....+    .++.+... ++. ++++....+.|..+++..
T Consensus       184 ----d~~i~i~d~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          184 ----TGRLLLLGLDGHEIFKEKLHKA----KVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             ----TSEEEEEETTSCEEEEEECSSS----CEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             ----CCCEEEEECCCCEEEEeccCCC----cEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence                4577777778887777765433    24445443 333 556656667788777765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.81  E-value=7.8e-05  Score=64.12  Aligned_cols=93  Identities=9%  Similarity=0.015  Sum_probs=64.7

Q ss_pred             EEEcCCC-cEEEEcC---CCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC-CC
Q 047259            5 VIEASDG-SLYFTVS---SKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES-WK   79 (225)
Q Consensus         5 v~~~~dG-~iy~td~---~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~-~~   79 (225)
                      +++++|| ++|++..   +...           .. .+.+..+|..++++...+.....|+||++++||++||++.. ..
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~-----------~~-~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCL-----------AA-AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTT-----------SC-EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEcCCCCEEEEEeccccCccc-----------cc-CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCC
Confidence            7788887 6888754   2000           00 23456999887776554444558999999999998999988 69


Q ss_pred             CEEEEEEecCCCCCceeEEec-cCCCCCCceEECCC
Q 047259           80 FRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPD  114 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~  114 (225)
                      +.|..+|+.+.     ++... ..+..|.+|++..+
T Consensus       337 ~~VsVID~~t~-----kvv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          337 EVLDIYDAASD-----QDQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             TEEEEEESSSC-----EEEEECCCCSCCCEEECCCC
T ss_pred             CeEEEEECCCC-----cEEEEEECCCCCCEEEeecC
Confidence            99999998642     22221 14567999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.80  E-value=0.0032  Score=52.05  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe---EEEEecCccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE---TTVLHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      ..+++.++|++.++-..                 .|.|..||..+++   +..+.........++++|+++.|+.+ ...
T Consensus        12 ~~~~~s~~~~~l~~~~~-----------------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d   73 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPN-----------------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTD   73 (372)
T ss_dssp             CEEEECTTSSEEEEECS-----------------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETT
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-cCC
Confidence            56888899987777543                 5678888876664   23333444567899999999855544 466


Q ss_pred             CEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCCCEEEEeec
Q 047259           80 FRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +.|..++++...  ....+. .........+++.++|+++++...
T Consensus        74 g~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  116 (372)
T 1k8k_C           74 RNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPNEKKFAVGSG  116 (372)
T ss_dssp             SCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEECCCCe--eeeeEEeecCCCceeEEEECCCCCEEEEEeC
Confidence            788889886421  111111 112334568899999987776654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.78  E-value=0.00044  Score=64.32  Aligned_cols=145  Identities=17%  Similarity=0.148  Sum_probs=85.8

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEeCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG----FYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      +.+..+++|+||+.-..                 .+.|+++|+++++++.....    ...++.|..+.+|+ ||++.. 
T Consensus       475 ~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-lWigt~-  535 (758)
T 3ott_A          475 NQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGL-LWVGFH-  535 (758)
T ss_dssp             EEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSC-EEEEET-
T ss_pred             eeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCC-EEEEec-
Confidence            35778888999982111                 12478999887777765321    23567899998887 998864 


Q ss_pred             CCEEEEEEecCCCCCceeEEe-ccCCC-CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           79 KFRCRRYWLKGPRQGRLESFI-EHLPG-GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        79 ~~~I~~~~~~~~~~~~~~~~~-~~~~g-~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                       +-|.+|++++..   .+.+. +.++. ...+|..+ +|+||++...                                 
T Consensus       536 -~Gl~~~~~~~~~---~~~~~~~gl~~~~i~~i~~~-~g~lWi~t~~---------------------------------  577 (758)
T 3ott_A          536 -GGVMRINPKDES---QQSISFGSFSNNEILSMTCV-KNSIWVSTTN---------------------------------  577 (758)
T ss_dssp             -TEEEEECC--CC---CCBCCCCC---CCEEEEEEE-TTEEEEEESS---------------------------------
T ss_pred             -CceEEEecCCCc---eEEecccCCCccceEEEEEC-CCCEEEECCC---------------------------------
Confidence             469999986531   21221 11221 23456555 8999998743                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCC
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                           .+.++|++......+..++.. +.  ..+.. .+|.||+++.  +-+.+|....
T Consensus       578 -----Gl~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~--~Gl~~f~p~~  626 (758)
T 3ott_A          578 -----GLWIIDRKTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGA--DGFGISHSNL  626 (758)
T ss_dssp             -----CEEEEETTTCCEEEC--CCCC-CS--EEEEETTTTEEEEECB--SEEEEEEC--
T ss_pred             -----CeEEEcCCCceeEEecCCCCc-ee--eeEEECCCCcEEEecC--CceEEEChhh
Confidence                 378888875444455555443 32  22233 4799999974  3566666554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.00068  Score=58.72  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             CcEEEcCCCcE-EEEcCCCCCCcchhhhhcccCCCCcEEEEEeCC--CCeEEEEe---cCccccceeEEecCCCEEEEEe
Q 047259            3 NDVIEASDGSL-YFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPE--LEETTVLH---EGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         3 ndv~~~~dG~i-y~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      ..+++.++|+. +++-..                 .|.|..||..  +++.....   .....+..++|+||++.|+++.
T Consensus       106 ~~~~~s~d~~~l~~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  168 (450)
T 2vdu_B          106 RNLRLTSDESRLIACADS-----------------DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD  168 (450)
T ss_dssp             EEEEECTTSSEEEEEEGG-----------------GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECC-----------------CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence            46788888875 466443                 4566666654  45443333   2235678999999999777775


Q ss_pred             CCCCEEEEEEecCCCCC--ceeEEeccCCCCCCceEECCC---CCEEEEeec
Q 047259           77 SWKFRCRRYWLKGPRQG--RLESFIEHLPGGPDNINLAPD---GSFWVALIK  123 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~--~~~~~~~~~~g~Pd~i~~d~~---G~l~v~~~~  123 (225)
                      . .+.|+.+++......  ....+.. ..+....+++.++   |+++++...
T Consensus       169 ~-~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~  218 (450)
T 2vdu_B          169 K-FGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDR  218 (450)
T ss_dssp             T-TSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEET
T ss_pred             C-CCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcC
Confidence            4 678999988643211  1112221 2234567889988   776666544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.76  E-value=0.0028  Score=54.63  Aligned_cols=86  Identities=15%  Similarity=0.035  Sum_probs=58.6

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--eEEEEe-------cCccccceeEEe---cC-
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--ETTVLH-------EGFYFANGVALS---KD-   68 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~-------~~~~~pnGi~~~---~d-   68 (225)
                      ..++.++++|+||+-|++..-.......  ....+.-.|+.+|..++  ++....       ....+-|.|+++   ++ 
T Consensus        89 V~~v~iD~~~rLWVLDtG~~~~~~~~~~--~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           89 IYQPVIDDCRRLWVVDIGSVEYRSRGAK--DYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             EEEEEECTTCEEEEEECSSCSSCSTTGG--GSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             eeEEEEcCCCcEEEEeCCCcCcCCCccc--cCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            3578999999999999984211000000  00034568999999887  654321       123567899999   32 


Q ss_pred             ---CCEEEEEeCCCCEEEEEEecC
Q 047259           69 ---ENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        69 ---g~~Lyv~~~~~~~I~~~~~~~   89 (225)
                         +.++||+|++.+.|..|++..
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~  190 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKK  190 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTT
T ss_pred             CCCccEEEEEcCCCCcEEEEECCC
Confidence               568999999999999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.73  E-value=0.0011  Score=55.02  Aligned_cols=86  Identities=7%  Similarity=-0.095  Sum_probs=52.3

Q ss_pred             CcEEEEEeCCCCeEEEE---ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCC-ceeEEeccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELEETTVL---HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQG-RLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~---~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~-~~~~~~~~~~g~Pd~i~~d  112 (225)
                      .|.|..||..+++....   .........++++|+++.|+++. ..+.|..++++..... ....+..........+++.
T Consensus        73 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence            56676777655654333   23345678999999998665554 5578888887642110 0112211123345788999


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      ++|+++++...
T Consensus       152 ~~~~~l~~~~~  162 (372)
T 1k8k_C          152 PNSVLLAAGSC  162 (372)
T ss_dssp             TTSSEEEEEET
T ss_pred             CCCCEEEEEcC
Confidence            99987776654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.73  E-value=0.0036  Score=52.94  Aligned_cols=84  Identities=8%  Similarity=0.084  Sum_probs=56.8

Q ss_pred             CCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..||..+++..... ........++|+|+++.| ++-+..+.|..+++...  .....+. ...+....+++.++
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~--~~~~~~~-~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDG--SNPRTLI-GHRATVTDIAIIDR  192 (420)
T ss_dssp             TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTC--CCCEEEE-CCSSCEEEEEEETT
T ss_pred             CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE-EEEeCCCeEEEEeCCCC--cCceEEc-CCCCcEEEEEEcCC
Confidence            4677888888766665554 344567899999999845 55566789999998642  1223332 22334568899999


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      |+++++...
T Consensus       193 ~~~l~s~~~  201 (420)
T 3vl1_A          193 GRNVLSASL  201 (420)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEEcC
Confidence            987776554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.72  E-value=0.0018  Score=55.60  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=90.5

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      .+++.|++.+.+|-+.                 .|.|..||..+++......+ ......++|+|+++ ++++-+.++.|
T Consensus       113 ~~~~~p~~~~l~s~s~-----------------Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i  174 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASE-----------------DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTI  174 (410)
T ss_dssp             EEEECSSSSEEEEEES-----------------SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCC
T ss_pred             EEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeE
Confidence            4666777776666443                 67888888877765554443 34568999999998 55666677888


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceE
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGAR  162 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~  162 (225)
                      ..+++.+.  .....+. ........+++.++|++.++...                                    .+.
T Consensus       175 ~iwd~~~~--~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~------------------------------------D~~  215 (410)
T 1vyh_C          175 KLWDFQGF--ECIRTMH-GHDHNVSSVSIMPNGDHIVSASR------------------------------------DKT  215 (410)
T ss_dssp             CEEETTSS--CEEECCC-CCSSCEEEEEECSSSSEEEEEET------------------------------------TSE
T ss_pred             EEEeCCCC--ceeEEEc-CCCCCEEEEEEeCCCCEEEEEeC------------------------------------CCe
Confidence            88887642  1112221 12223467889999987776655                                    344


Q ss_pred             EEEECC-CCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259          163 IVKVDT-HGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       163 V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      |...|. .|+.+..+.....    .+..+... ++.++++....+.|..+++..
T Consensus       216 i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          216 IKMWEVQTGYCVKTFTGHRE----WVRMVRPNQDGTLIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             EEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEECCCCcEEEEEeCCCc----cEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            555554 3666666654322    23333332 455555555556666666544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0042  Score=51.01  Aligned_cols=148  Identities=11%  Similarity=0.003  Sum_probs=87.1

Q ss_pred             CcEEEEEeCCC-CeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPEL-EETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~-~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      .|.|..||..+ ++..... ........++++|+++.|+.+ +..+.|..+++...  .....+.  .......+++.++
T Consensus       196 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~--~~~~~~~--~~~~~~~~~~~~~  270 (369)
T 3zwl_B          196 DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVSTL--QVLKKYE--TDCPLNTAVITPL  270 (369)
T ss_dssp             TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTC--CEEEEEE--CSSCEEEEEECSS
T ss_pred             CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe-cCCceEEEEECCCC--ceeeeec--CCCCceeEEecCC
Confidence            67899999875 3433333 344567899999999866544 56689999998642  1122222  2334568999999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |.+.++............                      ........+..+|.. ++.+..+....+    .++.+...
T Consensus       271 ~~~l~~~~~~~~~~~~~~----------------------~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s  324 (369)
T 3zwl_B          271 KEFIILGGGQEAKDVTTT----------------------SANEGKFEARFYHKIFEEEIGRVQGHFG----PLNTVAIS  324 (369)
T ss_dssp             SSEEEEEECCC-----------------------------------CEEEEEETTTCCEEEEEECCSS----CEEEEEEC
T ss_pred             CceEEEeecCCCceEEEE----------------------ecCCCcceeEEEecCCCcchhheecccC----cEEEEEEC
Confidence            987766655321100000                      000012356666654 777777765443    35555553


Q ss_pred             -CCEEEEeeCCCCeEEEEeCCCc
Q 047259          194 -EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       194 -~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                       +++++++....+.|..+++...
T Consensus       325 ~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          325 PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             TTSSEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEcCCCeEEEEECccc
Confidence             5666666667788888887653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00084  Score=56.46  Aligned_cols=82  Identities=15%  Similarity=-0.020  Sum_probs=52.4

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .|.|..+|..+++..... ........++++|++  ++++....+.|..+++...  .....+. ........+++.++|
T Consensus       268 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~--~~~~~~~-~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN--TLLALSI-VDGVPIFAGRISQDG  342 (425)
T ss_dssp             TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT--EEEEEEE-CTTCCEEEEEECTTS
T ss_pred             CCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC--cEeEecc-cCCccEEEEEEcCCC
Confidence            567777776554433333 234556899999998  5556667789999998642  1122222 123345688999999


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      +++++...
T Consensus       343 ~~l~~~~~  350 (425)
T 1r5m_A          343 QKYAVAFM  350 (425)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEEEC
Confidence            87776654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.71  E-value=0.002  Score=54.53  Aligned_cols=136  Identities=7%  Similarity=-0.005  Sum_probs=82.5

Q ss_pred             CcEEEEEeCCCCeEEEEecC-------------------------ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC
Q 047259           37 HGQLLKYDPELEETTVLHEG-------------------------FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR   91 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-------------------------~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~   91 (225)
                      .|.|..||..+++.......                         ......++|+|+++.| ++-...+.|..+++... 
T Consensus       202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~-  279 (420)
T 3vl1_A          202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSK-  279 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTC-
T ss_pred             CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCC-
Confidence            56777788766655443322                         1234567889999855 45556788999998642 


Q ss_pred             CCceeEEeccCCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-
Q 047259           92 QGRLESFIEHLPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-  169 (225)
Q Consensus        92 ~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-  169 (225)
                       .....+..........+++.++|. ++++...                                    .+.|...|.. 
T Consensus       280 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------------------------------------dg~i~vwd~~~  322 (420)
T 3vl1_A          280 -EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE------------------------------------NGMLAQWDLRS  322 (420)
T ss_dssp             -CEEEEECCTTSSCEEEEEECSSCTTEEEEEET------------------------------------TSEEEEEETTC
T ss_pred             -ceeEEcccccCCCceeEEEeCCCCCEEEEEeC------------------------------------CCeEEEEEcCC
Confidence             112222211223456899999998 6666554                                    3456666654 


Q ss_pred             C-cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          170 G-KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       170 G-~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      + +.+..+....+.   .++.+...++.++++....+.|...++..
T Consensus       323 ~~~~~~~~~~~~~~---~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          323 PECPVGEFLINEGT---PINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             TTSCSEEEEESTTS---CEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             CcCchhhhhccCCC---CceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            3 445555542222   34455556777878877788888888765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.71  E-value=0.0027  Score=52.84  Aligned_cols=130  Identities=11%  Similarity=0.043  Sum_probs=78.5

Q ss_pred             CcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~d~~  114 (225)
                      .|.|..||..+++...... .....+.++++|+++ ++++-+..+.|..+++...  .....+... .......+++.++
T Consensus       205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTT
T ss_pred             CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCC--cEEEEEccCCcccceEEEEECCC
Confidence            6778888877666544443 345578999999998 5556667789999988642  111222110 1112356889999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |++.++...                                    .+.|...|. .++.+..+....+    .++.+...
T Consensus       282 g~~l~~g~~------------------------------------d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s  321 (340)
T 1got_B          282 GRLLLAGYD------------------------------------DFNCNVWDALKADRAGVLAGHDN----RVSCLGVT  321 (340)
T ss_dssp             SSEEEEEET------------------------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEEC
T ss_pred             CCEEEEECC------------------------------------CCeEEEEEcccCcEeeEeecCCC----cEEEEEEc
Confidence            998887766                                    456666665 4666666664333    24444443


Q ss_pred             -CCEEEEeeCCCCeEEE
Q 047259          194 -EDNLYMASIQSKFVGK  209 (225)
Q Consensus       194 -~~~Lyv~~~~~~~i~~  209 (225)
                       ++.+.++....+.|..
T Consensus       322 ~dg~~l~s~s~D~~i~i  338 (340)
T 1got_B          322 DDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             TTSSCEEEEETTSCEEE
T ss_pred             CCCCEEEEEcCCccEEe
Confidence             4444444444454443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.70  E-value=0.00023  Score=63.86  Aligned_cols=73  Identities=11%  Similarity=-0.026  Sum_probs=47.6

Q ss_pred             EEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC---CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE
Q 047259           41 LKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW---KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF  117 (225)
Q Consensus        41 ~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l  117 (225)
                      ..||.++++.+.+.....  +.+++||||++|+.+...   ...|++++++++   ..+.+.. ..+....+++.+||+.
T Consensus       135 ~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g---~~~~l~~-~~~~~~~~~~SpDG~~  208 (582)
T 3o4h_A          135 ALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG---GLRVFDS-GEGSFSSASISPGMKV  208 (582)
T ss_dssp             EEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC---CCEEECC-SSCEEEEEEECTTSCE
T ss_pred             eEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC---CceEeec-CCCccccceECCCCCE
Confidence            355666677766654333  889999999988755432   257889988653   3444432 2334468899999986


Q ss_pred             EE
Q 047259          118 WV  119 (225)
Q Consensus       118 ~v  119 (225)
                      .+
T Consensus       209 l~  210 (582)
T 3o4h_A          209 TA  210 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.68  E-value=0.0047  Score=52.16  Aligned_cols=157  Identities=11%  Similarity=0.056  Sum_probs=89.9

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      ++|++.|||++.++-+.                  +.+..++..+++.....   ......+.++|+||++.+..+....
T Consensus       180 ~~v~fspdg~~l~s~s~------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          180 KDLHFSTDGKVVAYITG------------------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             CEEEECTTSSEEEEECS------------------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             EEEEEccCCceEEeccc------------------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            45666677765555332                  23445554444433221   1223457899999998666554332


Q ss_pred             C---EEEEEEecCCCCCc--eeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           80 F---RCRRYWLKGPRQGR--LESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        80 ~---~I~~~~~~~~~~~~--~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                      .   .|+.++........  ...+. ........+++.++|++.++...                               
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~-------------------------------  289 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASN-------------------------------  289 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEET-------------------------------
T ss_pred             cceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcC-------------------------------
Confidence            2   45666654321000  11111 11122357899999998877655                               


Q ss_pred             CCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCccc
Q 047259          155 LGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       155 ~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                           .+.|...|. +|+.+..+..  |. -..++.+++. ++++.++....+.|.+++++..-+
T Consensus       290 -----D~~V~iwd~~~~~~~~~~~~--gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          290 -----DNSIALVKLKDLSMSKIFKQ--AH-SFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA  346 (365)
T ss_dssp             -----TSCEEEEETTTTEEEEEETT--SS-SSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred             -----CCEEEEEECCCCcEEEEecC--cc-cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence                 345666665 4777766532  21 1246667664 678878888889999999875433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.68  E-value=0.0059  Score=49.85  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=67.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.+++.|+|.+.+|-..                 .|.|..+|..+++....... ....+.++++|+++.| ++-+..+.
T Consensus        17 ~~~~fsp~~~~l~s~~~-----------------dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~   78 (304)
T 2ynn_A           17 KGIDFHPTEPWVLTTLY-----------------SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWI-IVGSDDFR   78 (304)
T ss_dssp             EEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEE-EEEETTSE
T ss_pred             EEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEE-EEECCCCE
Confidence            46888999988777554                 67888888876654443333 3345789999999854 55566789


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      |..+++...  .....+. ...+....+++.++|.+.++...
T Consensus        79 i~vwd~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~  117 (304)
T 2ynn_A           79 IRVFNYNTG--EKVVDFE-AHPDYIRSIAVHPTKPYVLSGSD  117 (304)
T ss_dssp             EEEEETTTC--CEEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEECCCC--cEEEEEe-CCCCcEEEEEEcCCCCEEEEECC
Confidence            999998642  1222232 22334567899999987776655

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.68  E-value=0.0011  Score=57.06  Aligned_cols=85  Identities=12%  Similarity=0.109  Sum_probs=56.7

Q ss_pred             CcEEEEEeCCCC----eEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELE----ETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~----~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      .|.|..||..++    .+..+......++.|+|+|+++.++++-...+.|..+++... ......+. ...+....+++.
T Consensus       253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-~~~~~~~~-~h~~~v~~i~~s  330 (430)
T 2xyi_A          253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFE-SHKDEIFQVQWS  330 (430)
T ss_dssp             TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-TSCSEEEE-CCSSCEEEEEEC
T ss_pred             CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-CCCeEEee-cCCCCEEEEEEC
Confidence            678888887654    222333444668999999999878888888899999998642 11222332 223345688999


Q ss_pred             CCCC-EEEEeec
Q 047259          113 PDGS-FWVALIK  123 (225)
Q Consensus       113 ~~G~-l~v~~~~  123 (225)
                      ++|. ++++...
T Consensus       331 p~~~~~l~s~~~  342 (430)
T 2xyi_A          331 PHNETILASSGT  342 (430)
T ss_dssp             SSCTTEEEEEET
T ss_pred             CCCCCEEEEEeC
Confidence            9885 5666554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.67  E-value=0.0043  Score=52.72  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=64.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.+++.++|+..++-..                 .|.|..+|..+++......+ ......++|+|+++.| ++-+..+.
T Consensus       127 ~~v~~s~dg~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~  188 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAE-----------------DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRT  188 (393)
T ss_dssp             EEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSE
T ss_pred             EEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEE-EEecCCCc
Confidence            35677777776666443                 67888888877766555443 3456889999999855 56667789


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~  123 (225)
                      |..+++...   ....... .......+++.+ +|+++++...
T Consensus       189 v~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          189 VRIWDLRTG---QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEEEETTTT---EEEEEEE-CSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEEEECCCC---eeEEEEE-cCCCcEEEEEECCCCCEEEEEcC
Confidence            999988642   2211111 222345677887 7887776654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.63  E-value=0.0089  Score=55.05  Aligned_cols=142  Identities=10%  Similarity=0.027  Sum_probs=81.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC------------CCEEEEEEecCCCCCceeEEeccC--
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW------------KFRCRRYWLKGPRQGRLESFIEHL--  102 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~------------~~~I~~~~~~~~~~~~~~~~~~~~--  102 (225)
                      ...|+.+|..+|+.....-....-.+++|+ ||+.||++...            ..+|+++++.+.......++....  
T Consensus       154 ~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~  232 (693)
T 3iuj_A          154 WREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ  232 (693)
T ss_dssp             EEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred             eEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence            357899998888754432111113679999 99988777644            257999887643222233332111  


Q ss_pred             CCCCCceEECCCCCEE-EEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC---CcEEEEEEC
Q 047259          103 PGGPDNINLAPDGSFW-VALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH---GKIIMDFND  178 (225)
Q Consensus       103 ~g~Pd~i~~d~~G~l~-v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~---G~~~~~~~~  178 (225)
                      +..-.++.+++||+.. ++.....                                 ....|+.+|.+   +++. .+..
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~---------------------------------~~~~i~~~d~~~~~~~~~-~l~~  278 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANST---------------------------------SGNRLYVKDLSQENAPLL-TVQG  278 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSS---------------------------------SCCEEEEEETTSTTCCCE-EEEC
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCC---------------------------------CCcEEEEEECCCCCCceE-EEeC
Confidence            1112367889999844 3332210                                 03477777753   2443 4444


Q ss_pred             CCCCcccceeEEEEeCCEEEEeeCC---CCeEEEEeCCCcc
Q 047259          179 PNATYISFVTSAVEFEDNLYMASIQ---SKFVGKLPLNTPE  216 (225)
Q Consensus       179 p~g~~~~~~t~~~~~~~~Lyv~~~~---~~~i~~~~~~~~~  216 (225)
                      +.+.   ....+...+++||+.+..   ..+|.++++++..
T Consensus       279 ~~~~---~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          279 DLDA---DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             SSSS---CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             CCCc---eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            3322   122244568899888754   3689999998754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.62  E-value=0.0011  Score=55.85  Aligned_cols=84  Identities=11%  Similarity=0.022  Sum_probs=52.9

Q ss_pred             CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .|.|..+|..+++....... ....+.++++++++.++++....+.|..+++..........+. .....+..+++.+++
T Consensus       160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~  238 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEK  238 (357)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTS
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcc
Confidence            67788888877766555443 4556889999998777888888889998887642111110010 122335677888764


Q ss_pred             -CEEEEe
Q 047259          116 -SFWVAL  121 (225)
Q Consensus       116 -~l~v~~  121 (225)
                       .++++.
T Consensus       239 ~~~la~g  245 (357)
T 4g56_B          239 DDTFACG  245 (357)
T ss_dssp             TTEEEEE
T ss_pred             cceEEEe
Confidence             455543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.60  E-value=0.0034  Score=54.05  Aligned_cols=137  Identities=6%  Similarity=-0.031  Sum_probs=85.5

Q ss_pred             CcEEEEEeCCCCe--------EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCCCCCC
Q 047259           37 HGQLLKYDPELEE--------TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLPGGPD  107 (225)
Q Consensus        37 ~g~v~~~d~~~~~--------~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd  107 (225)
                      .|.|..++..++.        ...........+.++|+|++..++++....+.|..+++.... ......+. .....+.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~  281 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVN  281 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeE
Confidence            6778778875421        112223345578999999655688888888999999987431 11222222 2334567


Q ss_pred             ceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC--CcEEEEEECCCCCcc
Q 047259          108 NINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH--GKIIMDFNDPNATYI  184 (225)
Q Consensus       108 ~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~--G~~~~~~~~p~g~~~  184 (225)
                      .+++.++|. ++++...                                    .+.|..+|..  ++.+..+....+   
T Consensus       282 ~i~~~p~~~~~l~tg~~------------------------------------dg~v~vwd~~~~~~~~~~~~~h~~---  322 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSA------------------------------------DKTVALWDLRNLKLKLHSFESHKD---  322 (430)
T ss_dssp             EEEECSSCTTEEEEEET------------------------------------TSEEEEEETTCTTSCSEEEECCSS---
T ss_pred             EEEeCCCCCCEEEEEeC------------------------------------CCeEEEEeCCCCCCCeEEeecCCC---
Confidence            899999886 6666554                                    3455555543  455666654333   


Q ss_pred             cceeEEEEe--CCEEEEeeCCCCeEEEEeCCC
Q 047259          185 SFVTSAVEF--EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       185 ~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                       .++.+...  +..++++....+.|.++++..
T Consensus       323 -~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          323 -EIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             -CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             -CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence             34555543  446777777788888888776

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.0015  Score=56.59  Aligned_cols=83  Identities=10%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             CcEEEEEeCCCCeEE-----EEecCccccceeEEecC---CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCc
Q 047259           37 HGQLLKYDPELEETT-----VLHEGFYFANGVALSKD---ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDN  108 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~-----~~~~~~~~pnGi~~~~d---g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~  108 (225)
                      .|.|+.++..+++..     .+.........++|+||   +++| ++-...+.|..+++...  .....+.....+....
T Consensus       170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~s~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI-ITSDRDEHIKISHYPQC--FIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE-EEEETTSCEEEEEESCT--TCEEEECCCCSSCEEE
T ss_pred             CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE-EEEcCCCcEEEEECCCC--ceeeeeecCCCCceEE
Confidence            577888886544432     12223345688999999   7644 55556789999998642  1222333222344678


Q ss_pred             eEECCCCCEEEEeec
Q 047259          109 INLAPDGSFWVALIK  123 (225)
Q Consensus       109 i~~d~~G~l~v~~~~  123 (225)
                      +++. +|+++++...
T Consensus       247 ~~~s-d~~~l~s~~~  260 (450)
T 2vdu_B          247 ICCG-KDYLLLSAGG  260 (450)
T ss_dssp             EEEC-STTEEEEEES
T ss_pred             EEEC-CCCEEEEEeC
Confidence            9999 8988777655

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.59  E-value=0.0065  Score=53.83  Aligned_cols=137  Identities=14%  Similarity=0.088  Sum_probs=83.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCc-c---ccceeEEecC-CCEEEEEeCCCCEEEEEEecCCCCCceeEEec---cCCCCCCc
Q 047259           37 HGQLLKYDPELEETTVLHEGF-Y---FANGVALSKD-ENFVVVCESWKFRCRRYWLKGPRQGRLESFIE---HLPGGPDN  108 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~-~---~pnGi~~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~~g~Pd~  108 (225)
                      .|.|..||..+++........ .   ....++++|+ ++.|+. -...+.|..+++...  .....+..   ...+....
T Consensus       182 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~v~~  258 (615)
T 1pgu_A          182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT-VGSDRKISCFDGKSG--EFLKYIEDDQEPVQGGIFA  258 (615)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE-EETTCCEEEEETTTC--CEEEECCBTTBCCCSCEEE
T ss_pred             CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEE-EeCCCeEEEEECCCC--CEeEEecccccccCCceEE
Confidence            678888888766655544433 3   4678999999 885554 445689999998642  11222211   12233567


Q ss_pred             eEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccce
Q 047259          109 INLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFV  187 (225)
Q Consensus       109 i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~  187 (225)
                      +++. +|+++++...                                    .+.|..+|.. ++.+..+..+....-..+
T Consensus       259 ~~~~-~~~~l~~~~~------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  301 (615)
T 1pgu_A          259 LSWL-DSQKFATVGA------------------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQ  301 (615)
T ss_dssp             EEES-SSSEEEEEET------------------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred             EEEc-CCCEEEEEcC------------------------------------CCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence            8888 8887777665                                    3566666654 777777776532222233


Q ss_pred             eEEEE-eCCEEEEeeCCCCeEEEEeCCC
Q 047259          188 TSAVE-FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       188 t~~~~-~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      ..+.. .++.|+.+ ...+.|..+++..
T Consensus       302 ~~~~~~~~~~l~~~-~~~g~i~~~d~~~  328 (615)
T 1pgu_A          302 VGVVATGNGRIISL-SLDGTLNFYELGH  328 (615)
T ss_dssp             EEEEEEETTEEEEE-ETTSCEEEEETTE
T ss_pred             eEEEeCCCCeEEEE-ECCCCEEEEECCC
Confidence            34433 44555444 4567788877764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.59  E-value=0.0069  Score=50.69  Aligned_cols=83  Identities=12%  Similarity=-0.016  Sum_probs=54.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecCc---cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           36 PHGQLLKYDPELEETTVLHEGF---YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~---~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      ..|.|..+|..++.+..+....   .....++++|+++.| ++-...+.|..+++++.   ....+. ...+....+++.
T Consensus       139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~---~~~~~~-~h~~~v~~~~~~  213 (383)
T 3ei3_B          139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQML-ATGDSTGRLLLLGLDGH---EIFKEK-LHKAKVTHAEFN  213 (383)
T ss_dssp             TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEE-EEEETTSEEEEEETTSC---EEEEEE-CSSSCEEEEEEC
T ss_pred             CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEE-EEECCCCCEEEEECCCC---EEEEec-cCCCcEEEEEEC
Confidence            4677888887655555544332   446899999999955 45556689999998532   222332 223445789999


Q ss_pred             CCCC-EEEEeec
Q 047259          113 PDGS-FWVALIK  123 (225)
Q Consensus       113 ~~G~-l~v~~~~  123 (225)
                      ++|. ++++...
T Consensus       214 ~~~~~~l~s~~~  225 (383)
T 3ei3_B          214 PRCDWLMATSSV  225 (383)
T ss_dssp             SSCTTEEEEEET
T ss_pred             CCCCCEEEEEeC
Confidence            9998 6666554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.59  E-value=0.0086  Score=49.70  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           35 KPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ...+.|..+|..+++......+ ......++++|+++ ++++-...+.|..+++...  .....+. ........+++.+
T Consensus       161 s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~--~~~~~~~-~h~~~v~~v~~~p  236 (340)
T 1got_B          161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG--MCRQTFT-GHESDINAICFFP  236 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC--SEEEEEC-CCSSCEEEEEECT
T ss_pred             ECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCC--eeEEEEc-CCcCCEEEEEEcC
Confidence            3467788888877765544443 34568899999998 6677777889999998642  1222332 2233456889999


Q ss_pred             CCCEEEEeec
Q 047259          114 DGSFWVALIK  123 (225)
Q Consensus       114 ~G~l~v~~~~  123 (225)
                      +|+++++...
T Consensus       237 ~~~~l~s~s~  246 (340)
T 1got_B          237 NGNAFATGSD  246 (340)
T ss_dssp             TSSEEEEEET
T ss_pred             CCCEEEEEcC
Confidence            9998877655

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.58  E-value=0.012  Score=49.85  Aligned_cols=60  Identities=13%  Similarity=0.067  Sum_probs=39.3

Q ss_pred             cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ...++|+|||+.| ++-...+.|..++++..  .....+. ........+++.++|...++...
T Consensus       126 v~~v~~s~dg~~l-~s~~~d~~i~iwd~~~~--~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~  185 (393)
T 1erj_A          126 IRSVCFSPDGKFL-ATGAEDRLIRIWDIENR--KIVMILQ-GHEQDIYSLDYFPSGDKLVSGSG  185 (393)
T ss_dssp             EEEEEECTTSSEE-EEEETTSCEEEEETTTT--EEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCEE-EEEcCCCeEEEEECCCC--cEEEEEc-cCCCCEEEEEEcCCCCEEEEecC
Confidence            5689999999855 55556788999988642  1112222 12233467889999987776655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.57  E-value=0.007  Score=51.55  Aligned_cols=139  Identities=15%  Similarity=0.178  Sum_probs=86.0

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCC-------EEEEEeCC--CCEEEEEEecCCCCCceeEEecc-CC-
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDEN-------FVVVCESW--KFRCRRYWLKGPRQGRLESFIEH-LP-  103 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~-------~Lyv~~~~--~~~I~~~~~~~~~~~~~~~~~~~-~~-  103 (225)
                      .+.+.|+.||.+ |+....+.. ..+|++.+-|+=+       .+|++++.  .++|..|+++.. .+....+... .| 
T Consensus        47 ~k~~gL~Vydl~-G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~~~l~~i~~~~~pv  123 (355)
T 3amr_A           47 NKKSGLVVYSLD-GKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-NGTLQSMTDPDHPI  123 (355)
T ss_dssp             ETTTEEEEEETT-SCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-TCCEEECSCTTSCE
T ss_pred             cCCCCEEEEcCC-CcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-CCceeeccccccCc
Confidence            446789999995 665554444 5789988887421       56999998  999999987532 1223332110 02 


Q ss_pred             ----CCCCceEE--CCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEEC--CCC----
Q 047259          104 ----GGPDNINL--APD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVD--THG----  170 (225)
Q Consensus       104 ----g~Pd~i~~--d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d--~~G----  170 (225)
                          ..|.|+|+  +++ |.+|+-......                                 ....+++.  .+|    
T Consensus       124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G---------------------------------~~~q~~l~~~~~g~~~~  170 (355)
T 3amr_A          124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEG---------------------------------EFEQYELKADKNGYISG  170 (355)
T ss_dssp             ECCCSSCCCEEEEECTTTCCEEEEEECSSS---------------------------------EEEEEEEEECTTSCEEE
T ss_pred             CCCCCCeeEEEEEecCCCCcEEEEEECCCC---------------------------------eEEEEEEEeCCCCcccc
Confidence                46999999  874 655554444210                                 22333332  234    


Q ss_pred             cEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCc
Q 047259          171 KIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       171 ~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      +++..+..+.     .+-+++.+  .++||+++-. .-|++|+.+.+
T Consensus       171 ~lVR~f~lgs-----q~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~  211 (355)
T 3amr_A          171 KKVRAFKMNS-----QTEGMAADDEYGRLYIAEED-EAIWKFSAEPD  211 (355)
T ss_dssp             EEEEEEECSS-----CEEEEEEETTTTEEEEEETT-TEEEEEECSTT
T ss_pred             eEEEEecCCC-----CcceEEEcCCCCeEEEeccc-ceEEEEeCCcC
Confidence            5566677642     24455544  5999999987 45999997643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.57  E-value=0.0063  Score=51.64  Aligned_cols=138  Identities=4%  Similarity=-0.026  Sum_probs=84.5

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeC--CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .|.|..||..+++..... ........++++|++..++++..  ..+.|..+++...  .....+ . .......+++.+
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~-~-~~~~v~~~~~s~  313 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG--ARVNTV-D-AGSQVTSLIWSP  313 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC--CEEEEE-E-CSSCEEEEEECS
T ss_pred             CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC--CEEEEE-e-CCCcEEEEEECC
Confidence            578888888766554443 34456789999999887887755  6789999998642  112222 1 234467899999


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEE--ECCCCCcccceeEE
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDF--NDPNATYISFVTSA  190 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~--~~p~g~~~~~~t~~  190 (225)
                      +|+..++..+..                                  .+.|..++.. ++.....  ....+    .++.+
T Consensus       314 ~~~~l~~~~g~~----------------------------------dg~i~v~~~~~~~~~~~~~~~~h~~----~v~~~  355 (401)
T 4aez_A          314 HSKEIMSTHGFP----------------------------------DNNLSIWSYSSSGLTKQVDIPAHDT----RVLYS  355 (401)
T ss_dssp             SSSEEEEEECTT----------------------------------TCEEEEEEEETTEEEEEEEEECCSS----CCCEE
T ss_pred             CCCeEEEEeecC----------------------------------CCcEEEEecCCccceeEEEecCCCC----CEEEE
Confidence            999887765411                                  3445555433 4444433  32222    24444


Q ss_pred             EEe-CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          191 VEF-EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       191 ~~~-~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      ... ++.+.++....+.|..+++.+..
T Consensus       356 ~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          356 ALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            443 45555666667888888886644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.56  E-value=0.0027  Score=58.39  Aligned_cols=141  Identities=10%  Similarity=-0.075  Sum_probs=78.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCcccc--ceeEEecCCCEEEEEeCC------------CCEEEEEEecCCCCCceeEEecc-
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFA--NGVALSKDENFVVVCESW------------KFRCRRYWLKGPRQGRLESFIEH-  101 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~p--nGi~~~~dg~~Lyv~~~~------------~~~I~~~~~~~~~~~~~~~~~~~-  101 (225)
                      ...|+.+|..+|+... ...+...  .+++|+|||+.|+.+...            ..+|+++++.++......++... 
T Consensus       146 ~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~  224 (695)
T 2bkl_A          146 EAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG  224 (695)
T ss_dssp             CCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred             eEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence            4578999988776430 1122222  689999999988776542            34699998865322122232210 


Q ss_pred             CCCCCCceEECCCCCEE-EEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC
Q 047259          102 LPGGPDNINLAPDGSFW-VALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP  179 (225)
Q Consensus       102 ~~g~Pd~i~~d~~G~l~-v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p  179 (225)
                      .+..-.++.+++||+.. ++.....                               .  ...|+.++.. |++...... 
T Consensus       225 ~~~~~~~~~~SpDG~~l~~~~~~~~-------------------------------~--~~~l~~~~~~~~~~~~l~~~-  270 (695)
T 2bkl_A          225 DPTTFLQSDLSRDGKYLFVYILRGW-------------------------------S--ENDVYWKRPGEKDFRLLVKG-  270 (695)
T ss_dssp             CTTCEEEEEECTTSCCEEEEEEETT-------------------------------T--EEEEEEECTTCSSCEEEEEC-
T ss_pred             CCEEEEEEEECCCCCEEEEEEeCCC-------------------------------C--ceEEEEEcCCCCceEEeecC-
Confidence            11122378899999743 3333210                               0  4577777764 555433332 


Q ss_pred             CCCcccceeEEEEeCCEEEEeeC---CCCeEEEEeCCCcc
Q 047259          180 NATYISFVTSAVEFEDNLYMASI---QSKFVGKLPLNTPE  216 (225)
Q Consensus       180 ~g~~~~~~t~~~~~~~~Lyv~~~---~~~~i~~~~~~~~~  216 (225)
                      .+..   ...+..+++ ||+.+.   ...+|.++++++..
T Consensus       271 ~~~~---~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          271 VGAK---YEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             SSCC---EEEEEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             CCce---EEEEecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence            2221   122223344 888765   35789999987643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.55  E-value=0.0012  Score=55.21  Aligned_cols=79  Identities=10%  Similarity=-0.049  Sum_probs=49.4

Q ss_pred             cEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeC--CC--CEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           38 GQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCES--WK--FRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~--~~--~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      .+|+.++.++++.+.+...  ...+..++|+|||+.|+++..  +.  +.|+.++++++   ..+.+. ..++.  .+++
T Consensus       216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g---~~~~l~-~~~~~--~~~~  289 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL---ENEEVM-VMPPC--SHLM  289 (396)
T ss_dssp             CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC---CEEEEE-ECCSE--EEEE
T ss_pred             ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC---CeEEee-eCCCC--CCCc
Confidence            5789999876665555442  234677899999997655532  22  34999988642   333322 12332  2788


Q ss_pred             CC-CCCEEEEee
Q 047259          112 AP-DGSFWVALI  122 (225)
Q Consensus       112 d~-~G~l~v~~~  122 (225)
                      .+ +|++++...
T Consensus       290 s~~dg~~l~~~~  301 (396)
T 3c5m_A          290 SNFDGSLMVGDG  301 (396)
T ss_dssp             ECSSSSEEEEEE
T ss_pred             cCCCCceEEEec
Confidence            88 999776643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.52  E-value=0.00083  Score=61.46  Aligned_cols=95  Identities=16%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcc----ccceeEEecCCCEEEEEeC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFY----FANGVALSKDENFVVVCES   77 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~----~pnGi~~~~dg~~Lyv~~~   77 (225)
                      +..+++.+||++.++ +.                 .|.|+.+|..+++.+.+.....    ....++|||||++|.++..
T Consensus        19 ~~~~~~spdg~~~~~-~~-----------------dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~   80 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQ-----------------KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN   80 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CS-----------------SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred             ccccEEcCCCcEEEE-eC-----------------CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEec
Confidence            456777888885544 22                 5689999988777766665543    3788999999998766643


Q ss_pred             C--------CCEEEEEEecCCCCCceeEEeccC--CCCCCceEECCCCCE
Q 047259           78 W--------KFRCRRYWLKGPRQGRLESFIEHL--PGGPDNINLAPDGSF  117 (225)
Q Consensus        78 ~--------~~~I~~~~~~~~~~~~~~~~~~~~--~g~Pd~i~~d~~G~l  117 (225)
                      .        .+.|+.++++++   ..+.+....  ......+++.+||+.
T Consensus        81 ~~~~~~~~~~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~~~~SPdG~~  127 (723)
T 1xfd_A           81 VEPIYQHSYTGYYVLSKIPHG---DPQSLDPPEVSNAKLQYAGWGPKGQQ  127 (723)
T ss_dssp             CCCCSSSCCCSEEEEEESSSC---CCEECCCTTCCSCCCSBCCBCSSTTC
T ss_pred             CccceeecceeeEEEEECCCC---ceEeccCCccccccccccEECCCCCE
Confidence            2        268889998753   222222111  112456777777753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.51  E-value=0.0083  Score=55.32  Aligned_cols=152  Identities=11%  Similarity=0.084  Sum_probs=94.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ..+++.|+|...++-..                 .|.|..||..+++...... .......++|+||++.|.++. ..+.
T Consensus        17 ~~i~~sp~~~~la~~~~-----------------~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~   78 (814)
T 3mkq_A           17 KGIDFHPTEPWVLTTLY-----------------SGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFR   78 (814)
T ss_dssp             EEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSE
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCe
Confidence            46788888876666443                 6788889977676544443 345568999999999665554 5789


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcce
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGA  161 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~  161 (225)
                      |..+++.+.  .....+. ...+....+++.++|...++...                                    .+
T Consensus        79 i~vw~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~------------------------------------dg  119 (814)
T 3mkq_A           79 IRVFNYNTG--EKVVDFE-AHPDYIRSIAVHPTKPYVLSGSD------------------------------------DL  119 (814)
T ss_dssp             EEEEETTTC--CEEEEEE-CCSSCEEEEEECSSSSEEEEEET------------------------------------TS
T ss_pred             EEEEECCCC--cEEEEEe-cCCCCEEEEEEeCCCCEEEEEcC------------------------------------CC
Confidence            999998642  1222222 23344578899999987665544                                    33


Q ss_pred             EEEEECCC--CcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCc
Q 047259          162 RIVKVDTH--GKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       162 ~V~~~d~~--G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .|...|.+  ......+....+    .++.+...  ++.++++....+.|..+++...
T Consensus       120 ~i~vw~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~  173 (814)
T 3mkq_A          120 TVKLWNWENNWALEQTFEGHEH----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (814)
T ss_dssp             EEEEEEGGGTSEEEEEEECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred             EEEEEECCCCceEEEEEcCCCC----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            44444433  355555554332    24444443  4556666666777888777543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.51  E-value=0.0058  Score=56.74  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCc------cccceeEEecCCCEEEEEeC
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGF------YFANGVALSKDENFVVVCES   77 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~------~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      .+..+++|+||+...                   +.|+++++.+++.+......      ...+.|..+.+++.|||+..
T Consensus       150 ~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~  210 (758)
T 3ott_A          150 SIIRTKDNQIYVGTY-------------------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE  210 (758)
T ss_dssp             EEEECTTCCEEEEET-------------------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCEEEEeC-------------------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC
Confidence            455677788887632                   24788888766655432111      12346777777777899873


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEe
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~  121 (225)
                        +.|++|++.+.   ....+..........|..|.+|+||++.
T Consensus       211 --~Gl~~~~~~~~---~~~~~~~l~~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          211 --GYLFQYFPSTG---QIKQTEAFHNNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             --EEEEEEETTTT---EEEEEEEEEEEEEEEEEECTTCCEEEEE
T ss_pred             --CCCeEEcCCCC---eEEeccCCCCCeEEEEEEcCCCCEEEEe
Confidence              47999987642   2222211011123578899999999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.49  E-value=0.0026  Score=53.74  Aligned_cols=100  Identities=15%  Similarity=-0.012  Sum_probs=61.1

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCR   83 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~   83 (225)
                      .+++.|||++.++-++               ...+.|..+|..+++...........+.++|+|||++|..+.  .+.+.
T Consensus       138 ~v~fSpDg~~la~as~---------------~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--~~~~~  200 (365)
T 4h5i_A          138 LVYISREGTVAAIASS---------------KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--GSSLE  200 (365)
T ss_dssp             EEEECTTSSCEEEEES---------------CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--SSCEE
T ss_pred             EEEEcCCCCEEEEEEC---------------CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--ceeEE
Confidence            4778888875443222               125788888988777665555555678999999999654443  45677


Q ss_pred             EEEecCCCCCcee-EEec-cCCCCCCceEECCCCCEEEEeec
Q 047259           84 RYWLKGPRQGRLE-SFIE-HLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~-~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +++....   ... .... ........+++.++|.++++...
T Consensus       201 ~~~~~~~---~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~  239 (365)
T 4h5i_A          201 VISTVTG---SCIARKTDFDKNWSLSKINFIADDTVLIAASL  239 (365)
T ss_dssp             EEETTTC---CEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeccC---cceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence            7776432   111 1111 11122457888888887666544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.44  E-value=0.0067  Score=53.72  Aligned_cols=155  Identities=11%  Similarity=0.048  Sum_probs=92.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      +.+++.++|+..++-...             ....+.|+.+|.. .....+.......+.++++|+++.++++-...+.|
T Consensus       120 ~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v  185 (615)
T 1pgu_A          120 SDISWDFEGRRLCVVGEG-------------RDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV  185 (615)
T ss_dssp             EEEEECTTSSEEEEEECC-------------SSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred             EEEEEeCCCCEEEEeccC-------------CCCccEEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence            356677777655543321             1224788888843 33444444455678999999998667777778899


Q ss_pred             EEEEecCCCCCceeEEeccCCC---CCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCC
Q 047259           83 RRYWLKGPRQGRLESFIEHLPG---GPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGND  158 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g---~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  158 (225)
                      ..+++...  .....+. ....   ....+++.++ |+++++...                                   
T Consensus       186 ~vwd~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------------------  227 (615)
T 1pgu_A          186 VFYQGPPF--KFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGS-----------------------------------  227 (615)
T ss_dssp             EEEETTTB--EEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEET-----------------------------------
T ss_pred             EEEeCCCc--ceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeC-----------------------------------
Confidence            99987531  1122222 1222   3457899999 987776655                                   


Q ss_pred             cceEEEEECC-CCcEEEEE-E---CCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          159 AGARIVKVDT-HGKIIMDF-N---DPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       159 ~~~~V~~~d~-~G~~~~~~-~---~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                       .+.|..+|. .|+.+..+ .   ...+    .++.+...++.++++....+.|..+++..
T Consensus       228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          228 -DRKISCFDGKSGEFLKYIEDDQEPVQG----GIFALSWLDSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             -TCCEEEEETTTCCEEEECCBTTBCCCS----CEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             -CCeEEEEECCCCCEeEEecccccccCC----ceEEEEEcCCCEEEEEcCCCcEEEEECCC
Confidence             345666664 47777666 3   2222    34444443544555555567777777764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.44  E-value=0.027  Score=46.62  Aligned_cols=52  Identities=15%  Similarity=0.059  Sum_probs=36.8

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..+|..+++..... ........++|+||++.| ++-...+.|..+++.+
T Consensus        97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIKLWNILG  149 (343)
T ss_dssp             TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEE-EEEETTSCEEEEESSS
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEE-EEEcCCCEEEEEeccC
Confidence            678888887766544333 334556889999999855 4555678888888753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.43  E-value=0.00066  Score=54.24  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-------CeEEEEec-CccccceeEEecCCCEEEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-------EETTVLHE-GFYFANGVALSKDENFVVV   74 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-------~~~~~~~~-~~~~pnGi~~~~dg~~Lyv   74 (225)
                      .++++.|+|.||..  .                 .|.||++++.+       +.-+.+.+ +...=..+.++++|. ||+
T Consensus        44 ~~laf~P~G~LYaV--~-----------------~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYa  103 (236)
T 1tl2_A           44 KFLFLSPGGELYGV--L-----------------NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYA  103 (236)
T ss_dssp             SEEEECTTSCEEEE--E-----------------TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEE
T ss_pred             eeEEECCCccEEEE--e-----------------CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEE
Confidence            47888888888888  2                 46889988754       22223322 334457799999997 998


Q ss_pred             EeCCCCEEEEEEecC--C-C-CCceeEEecc-CCCCCCceEECCCCCEEEEe
Q 047259           75 CESWKFRCRRYWLKG--P-R-QGRLESFIEH-LPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        75 ~~~~~~~I~~~~~~~--~-~-~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~  121 (225)
                      +  .+++|+|++.-.  . . +....++.+. -... .-+.++++|.||.+.
T Consensus       104 v--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~-~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          104 V--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGF-KFLFFHPNGYLYAVH  152 (236)
T ss_dssp             E--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGE-EEEEECTTSCEEEEE
T ss_pred             e--CCCEEEEeCCCcCCCCceeccccEeccCCCCce-EEEEECCCceEEEEe
Confidence            8  348999998632  1 0 1111222210 0112 578999999999988

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.43  E-value=0.0019  Score=54.32  Aligned_cols=138  Identities=12%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             CcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .|.|..+|..+++.....   .....+..++++|++..++++-...+.|..+++...  .....+. .....-..+++.+
T Consensus       203 dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--~~~~~~~-~~~~~v~~l~~sp  279 (357)
T 4g56_B          203 DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--DSAQTSA-VHSQNITGLAYSY  279 (357)
T ss_dssp             TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--GGCEEEC-CCSSCEEEEEECS
T ss_pred             CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--cEeEEEe-ccceeEEEEEEcC
Confidence            566777776554432221   123346789999987667777777789999998642  1222232 1222346788988


Q ss_pred             CCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE
Q 047259          114 DGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV  191 (225)
Q Consensus       114 ~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~  191 (225)
                      +|. +.++...                                    .+.|...|.+ |+++..+.. .+    .++.++
T Consensus       280 ~~~~~lasgs~------------------------------------D~~i~iwd~~~~~~~~~~~H-~~----~V~~va  318 (357)
T 4g56_B          280 HSSPFLASISE------------------------------------DCTVAVLDADFSEVFRDLSH-RD----FVTGVA  318 (357)
T ss_dssp             SSSCCEEEEET------------------------------------TSCEEEECTTSCEEEEECCC-SS----CEEEEE
T ss_pred             CCCCEEEEEeC------------------------------------CCEEEEEECCCCcEeEECCC-CC----CEEEEE
Confidence            875 4444333                                    3456666765 566554432 22    356666


Q ss_pred             Ee--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          192 EF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       192 ~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                      ..  ++.++++....+.|...+++.+.++
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            53  5666666667788888888766544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0038  Score=52.55  Aligned_cols=142  Identities=7%  Similarity=-0.057  Sum_probs=81.0

Q ss_pred             CcEEEEEeCCC----C-eEEEEecCccccceeEEecC-CCEEEEEeCCCCEEEEEEecCCCCC----ceeEEe--ccCCC
Q 047259           37 HGQLLKYDPEL----E-ETTVLHEGFYFANGVALSKD-ENFVVVCESWKFRCRRYWLKGPRQG----RLESFI--EHLPG  104 (225)
Q Consensus        37 ~g~v~~~d~~~----~-~~~~~~~~~~~pnGi~~~~d-g~~Lyv~~~~~~~I~~~~~~~~~~~----~~~~~~--~~~~g  104 (225)
                      .|.|..|+..+    . .+..+.........++|+|+ ++ ++++-...+.|..+++......    ....+.  ....+
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD  166 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence            56777777654    1 23333334456789999998 55 6666667789999998753100    111110  11223


Q ss_pred             CCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCC
Q 047259          105 GPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNAT  182 (225)
Q Consensus       105 ~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~  182 (225)
                      ....+++.++ ++++++...                                    .+.|..+|.+ ++.+..+..+...
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGS------------------------------------SNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESS------------------------------------SSCEEEEETTTTEEEEEECCCCCS
T ss_pred             CeeEEEeCCCCCcEEEEEcC------------------------------------CCCEEEEECCCCCcceEEeccccc
Confidence            4678999998 677776654                                    3456666654 6666666553100


Q ss_pred             --cccceeEEEEe--CCEEEEeeCCCC---eEEEEeCCCc
Q 047259          183 --YISFVTSAVEF--EDNLYMASIQSK---FVGKLPLNTP  215 (225)
Q Consensus       183 --~~~~~t~~~~~--~~~Lyv~~~~~~---~i~~~~~~~~  215 (225)
                        .-..++.+...  +..++++....+   .|..+++...
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence              01134555543  234555544555   7888887764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0093  Score=49.92  Aligned_cols=132  Identities=11%  Similarity=-0.011  Sum_probs=76.4

Q ss_pred             CcEEEEEeCCCCeEEEEecCcc-c---------------cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec
Q 047259           37 HGQLLKYDPELEETTVLHEGFY-F---------------ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE  100 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~-~---------------pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~  100 (225)
                      .|.|..+|..+++......... .               ...+++++++.  +++-...+.|..+++...  .....+. 
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~i~~~d~~~~--~~~~~~~-  244 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK--FVIPGPKGAIFVYQITEK--TPTGKLI-  244 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE--EEEECGGGCEEEEETTCS--SCSEEEC-
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE--EEEEcCCCeEEEEEcCCC--ceeeeec-
Confidence            5678888876666544433222 2               78899999863  455556789999998742  1122222 


Q ss_pred             cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC
Q 047259          101 HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP  179 (225)
Q Consensus       101 ~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p  179 (225)
                      ........+++.++|+++++...                                    .+.|..+|.. ++.+..+...
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~------------------------------------d~~i~i~d~~~~~~~~~~~~~  288 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASD------------------------------------DGTLRIWHGGNGNSQNCFYGH  288 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEET------------------------------------TSCEEEECSSSBSCSEEECCC
T ss_pred             cCCCceEEEEECCCCCEEEEEcC------------------------------------CCEEEEEECCCCccceEecCC
Confidence            22333467899999987766654                                    3455556643 5555555432


Q ss_pred             CCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259          180 NATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       180 ~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+    .++.+... ++ ++++....+.|..+++..
T Consensus       289 ~~----~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          289 SQ----SIVSASWVGDD-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             SS----CEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred             Cc----cEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence            22    23444443 44 444555566777777654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.41  E-value=0.0078  Score=50.52  Aligned_cols=137  Identities=13%  Similarity=0.076  Sum_probs=80.1

Q ss_pred             CcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .+.|..+|..+++.....   ........++++|++..++++-..++.|..+++...  .....+.. ....-..+++.+
T Consensus       191 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--~~~~~~~~-h~~~v~~v~fsp  267 (344)
T 4gqb_B          191 DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--SCVLSSAV-HSQCVTGLVFSP  267 (344)
T ss_dssp             TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CCEEEEC-CSSCEEEEEECS
T ss_pred             ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--cEEEEEcC-CCCCEEEEEEcc
Confidence            567888887666543332   122346789999977668888778889999998642  12223322 223346789999


Q ss_pred             CCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEE
Q 047259          114 DGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAV  191 (225)
Q Consensus       114 ~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~  191 (225)
                      +|. +.++...                                    .+.|...|.. |++. .+..-.+    .++.+.
T Consensus       268 ~g~~~lasgs~------------------------------------D~~i~vwd~~~~~~~-~~~~H~~----~V~~v~  306 (344)
T 4gqb_B          268 HSVPFLASLSE------------------------------------DCSLAVLDSSLSELF-RSQAHRD----FVRDAT  306 (344)
T ss_dssp             SSSCCEEEEET------------------------------------TSCEEEECTTCCEEE-EECCCSS----CEEEEE
T ss_pred             CCCeEEEEEeC------------------------------------CCeEEEEECCCCcEE-EEcCCCC----CEEEEE
Confidence            885 4444433                                    3455666665 4443 3332222    355565


Q ss_pred             Ee--CCEEEEeeCCCCeEEEEeCCCccc
Q 047259          192 EF--EDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       192 ~~--~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      ..  +..|+.+.-..+.|....++.+..
T Consensus       307 ~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          307 WSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            53  456766666678888888776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.38  E-value=0.0006  Score=57.04  Aligned_cols=86  Identities=15%  Similarity=0.010  Sum_probs=47.0

Q ss_pred             CcEEEEEeCCCCe----EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCCCCCCceEE
Q 047259           37 HGQLLKYDPELEE----TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~----~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      .|.|..||..+++    ...+.........++|+||++.|+.+ +..+.|..++++... ......+.....+....+++
T Consensus        76 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW  154 (377)
T ss_dssp             TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred             CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence            5667777765444    23333444567899999999855544 456788888876421 11122332112334568899


Q ss_pred             CCCCCEEEEeec
Q 047259          112 APDGSFWVALIK  123 (225)
Q Consensus       112 d~~G~l~v~~~~  123 (225)
                      .++|++.++...
T Consensus       155 ~~~~~~l~~~~~  166 (377)
T 3dwl_C          155 HPNNVLLAAGCA  166 (377)
T ss_dssp             CTTSSEEEEEES
T ss_pred             cCCCCEEEEEeC
Confidence            999987766554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.38  E-value=0.004  Score=52.13  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc---C---CCCCCceEECCCCCEEEEeecCCchhhh
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH---L---PGGPDNINLAPDGSFWVALIKMNQTGVR  130 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~---~g~Pd~i~~d~~G~l~v~~~~~~~~~~~  130 (225)
                      ......++++|++  ++++-...+.|..+++...  .....+. .   .   ......++++++|+++++.....     
T Consensus       186 ~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-----  255 (397)
T 1sq9_A          186 SQFATSVDISERG--LIATGFNNGTVQISELSTL--RPLYNFE-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-----  255 (397)
T ss_dssp             CCCCCEEEECTTS--EEEEECTTSEEEEEETTTT--EEEEEEE-CCC---CCCCCEEEEEECSSTTEEEEEEEET-----
T ss_pred             CCCceEEEECCCc--eEEEEeCCCcEEEEECCCC--ceeEEEe-ccccccccCCccceEEECCCCCEEEEEecCC-----
Confidence            4567899999998  5555667789999998642  1122222 1   1   33456899999999877765510     


Q ss_pred             hhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCC--C-------cccceeEEEEe-CCEEEE
Q 047259          131 AIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNA--T-------YISFVTSAVEF-EDNLYM  199 (225)
Q Consensus       131 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g--~-------~~~~~t~~~~~-~~~Lyv  199 (225)
                                                  ..+.|..+|. .++.+..+..+..  .       .-..++.+... ++.+++
T Consensus       256 ----------------------------~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          256 ----------------------------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             ----------------------------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ----------------------------CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence                                        0167777775 4777777764210  0       01234455543 444455


Q ss_pred             eeCCCCeEEEEeCCCc
Q 047259          200 ASIQSKFVGKLPLNTP  215 (225)
Q Consensus       200 ~~~~~~~i~~~~~~~~  215 (225)
                      +....+.|..+++...
T Consensus       308 ~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          308 SAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EEETTSEEEEEETTTT
T ss_pred             EEeCCCeEEEEEcCCC
Confidence            5556778888877653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.38  E-value=0.011  Score=54.70  Aligned_cols=140  Identities=10%  Similarity=0.005  Sum_probs=78.7

Q ss_pred             cEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC-------------CCEEEEEEecCCCCCceeEEeccCCC
Q 047259           38 GQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW-------------KFRCRRYWLKGPRQGRLESFIEHLPG  104 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~-------------~~~I~~~~~~~~~~~~~~~~~~~~~g  104 (225)
                      ..|+.+|.++|+............+++|+|| +.||++...             ..+|+++++.+.......++.  .+.
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~--~~~  265 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA--TPE  265 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC--CTT
T ss_pred             EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec--cCC
Confidence            5799999887876443111111258999999 888777643             235888887543211222322  222


Q ss_pred             ---CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCc--E-EEEEEC
Q 047259          105 ---GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGK--I-IMDFND  178 (225)
Q Consensus       105 ---~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~--~-~~~~~~  178 (225)
                         .-.++.+++||+..+.......                             .  ....|+.+|.++.  . ...+..
T Consensus       266 ~~~~~~~~~~SpDG~~l~~~~~~~~-----------------------------~--~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          266 LPKRGHGASVSSDGRWVVITSSEGT-----------------------------D--PVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECTT-----------------------------C--SCCEEEEEEEETTEECCCEEEEC
T ss_pred             CCeEEEEEEECCCCCEEEEEEEccC-----------------------------C--CcceEEEEECCCCCCcccEEecC
Confidence               2247889999974333322100                             0  0346777776432  2 344443


Q ss_pred             CCCCcccceeEEEEeCCEEEEeeCC---CCeEEEEeCCC
Q 047259          179 PNATYISFVTSAVEFEDNLYMASIQ---SKFVGKLPLNT  214 (225)
Q Consensus       179 p~g~~~~~~t~~~~~~~~Lyv~~~~---~~~i~~~~~~~  214 (225)
                      +.+..   ...+..++++||+.+..   ..+|.++++++
T Consensus       315 ~~~~~---~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          315 DLKAQ---WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             SSSSC---EEEEEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             CCCce---EEEEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            33221   22234678889888653   45699998876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.38  E-value=0.021  Score=46.66  Aligned_cols=132  Identities=14%  Similarity=0.007  Sum_probs=79.8

Q ss_pred             CcEEEEEeCCC-CeE--EEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE--
Q 047259           37 HGQLLKYDPEL-EET--TVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL--  111 (225)
Q Consensus        37 ~g~v~~~d~~~-~~~--~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~--  111 (225)
                      .|.|..||..+ +..  ..+.........++|+|+++.|+ +-+..+.|..++++..   ....+. ...+....+++  
T Consensus        63 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~---~~~~~~-~~~~~v~~~~~~~  137 (368)
T 3mmy_A           63 ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSN---QAIQIA-QHDAPVKTIHWIK  137 (368)
T ss_dssp             TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEEEE
T ss_pred             CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEcCCC---Cceeec-cccCceEEEEEEe
Confidence            56676666553 332  23333455678999999998555 4456789999998652   222222 23334567888  


Q ss_pred             CCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEE
Q 047259          112 APDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSA  190 (225)
Q Consensus       112 d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~  190 (225)
                      +++|+++++...                                    .+.|..+|. .++.+..+..+..     ...+
T Consensus       138 ~~~~~~l~~~~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~-----~~~~  176 (368)
T 3mmy_A          138 APNYSCVMTGSW------------------------------------DKTLKFWDTRSSNPMMVLQLPER-----CYCA  176 (368)
T ss_dssp             CSSCEEEEEEET------------------------------------TSEEEEECSSCSSCSEEEECSSC-----EEEE
T ss_pred             CCCCCEEEEccC------------------------------------CCcEEEEECCCCcEEEEEecCCC-----ceEE
Confidence            888887776655                                    456777775 4677777775431     2233


Q ss_pred             EEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          191 VEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       191 ~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ......++++. ..+.+..+++...
T Consensus       177 ~~~~~~~~~~~-~~~~i~~~~~~~~  200 (368)
T 3mmy_A          177 DVIYPMAVVAT-AERGLIVYQLENQ  200 (368)
T ss_dssp             EEETTEEEEEE-GGGCEEEEECSSS
T ss_pred             EecCCeeEEEe-CCCcEEEEEeccc
Confidence            34455555544 3456666666654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.38  E-value=0.01  Score=54.66  Aligned_cols=141  Identities=9%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             CcEEEEEeCCC------C--eEEEEecCccccceeEEecCCCEEEEEeCC---CCEEEEEEecCCCCCceeEEeccCC-C
Q 047259           37 HGQLLKYDPEL------E--ETTVLHEGFYFANGVALSKDENFVVVCESW---KFRCRRYWLKGPRQGRLESFIEHLP-G  104 (225)
Q Consensus        37 ~g~v~~~d~~~------~--~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~-g  104 (225)
                      ...|+.+|.++      +  .++.+...... ..-.+++||+.||+....   ..+|+++++++......+.+..... .
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            56889888764      4  45555443322 233688999988877643   4589999987532222344443322 1


Q ss_pred             CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCc
Q 047259          105 GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATY  183 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~  183 (225)
                      ...++++.+++.++++....                                  ....|.+++. +|+.+..+..+.+. 
T Consensus       337 ~~~~~~~~~~~~lv~~~~~~----------------------------------g~~~l~~~~~~~g~~~~~l~~~~~~-  381 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLHD----------------------------------VKNTLQLHDLATGALLKIFPLEVGS-  381 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEET----------------------------------TEEEEEEEETTTCCEEEEECCCSSE-
T ss_pred             eEEEEEEEcCCEEEEEEEEC----------------------------------CEEEEEEEECCCCCEEEecCCCCce-
Confidence            33467777667777766541                                  1457888887 68877777766442 


Q ss_pred             ccceeEEEE--eCCEEEEe--e-CCCCeEEEEeCCCcc
Q 047259          184 ISFVTSAVE--FEDNLYMA--S-IQSKFVGKLPLNTPE  216 (225)
Q Consensus       184 ~~~~t~~~~--~~~~Lyv~--~-~~~~~i~~~~~~~~~  216 (225)
                         +..+..  ++..|+++  + ..-..|+.+++.+..
T Consensus       382 ---v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          382 ---VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ---EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ---EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence               222222  24466654  2 223567777776543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.35  E-value=0.0085  Score=49.89  Aligned_cols=85  Identities=7%  Similarity=-0.010  Sum_probs=47.6

Q ss_pred             CcEEEEEeCCCCeEEE--Eec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCc-eeEEeccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELEETTV--LHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGR-LESFIEHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~--~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~g~Pd~i~~d  112 (225)
                      .+.+..++..++..+.  ... .....+.++|+|+++ ++++-+..+.|..++++...... ...+. ........+++.
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~  159 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWH  159 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEEC
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEEC
Confidence            4444445443343322  223 334568999999998 55566667889888886421111 11221 112234568888


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      ++|++.++...
T Consensus       160 p~~~~l~s~s~  170 (345)
T 3fm0_A          160 PSQELLASASY  170 (345)
T ss_dssp             SSSSCEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            88886666544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.30  E-value=0.028  Score=46.95  Aligned_cols=102  Identities=10%  Similarity=0.057  Sum_probs=64.1

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.+++.++|+..+|-+.                 .|.|..||..+++.... .........++++|+|+ ++++-...+.
T Consensus        68 ~~~~~s~d~~~l~s~s~-----------------Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~  129 (354)
T 2pbi_B           68 LCMDWCKDKRRIVSSSQ-----------------DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNK  129 (354)
T ss_dssp             EEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-EEEEESTTSE
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-EEEEeeCCCC
Confidence            35677777777776543                 67888888765554433 33445678999999998 5566677788


Q ss_pred             EEEEEecCCC----CCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPR----QGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~----~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      |..+++....    ......+. ...+....+++.+++...++...
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeC
Confidence            8888875210    11112222 12233457888888876666554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.02  Score=45.84  Aligned_cols=133  Identities=9%  Similarity=0.045  Sum_probs=84.2

Q ss_pred             CCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..+|.. .....+.. .......++++|++.  +++-...+.|..+++...  .....+. ...+....+++.++
T Consensus       163 ~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~i~~~~~~~~  236 (313)
T 3odt_A          163 ADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG--DVLRTYE-GHESFVYCIKLLPN  236 (313)
T ss_dssp             TTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC--CEEEEEE-CCSSCEEEEEECTT
T ss_pred             CCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCch--hhhhhhh-cCCceEEEEEEecC
Confidence            35677778743 22223322 445678999999986  455566789999998642  1222222 22344578999999


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |.++.+. .                                    .+.|..+|. .++.+..+..+.+    .++.+...
T Consensus       237 ~~l~~~~-~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~  275 (313)
T 3odt_A          237 GDIVSCG-E------------------------------------DRTVRIWSKENGSLKQVITLPAI----SIWSVDCM  275 (313)
T ss_dssp             SCEEEEE-T------------------------------------TSEEEEECTTTCCEEEEEECSSS----CEEEEEEC
T ss_pred             CCEEEEe-c------------------------------------CCEEEEEECCCCceeEEEeccCc----eEEEEEEc
Confidence            9655433 2                                    457777885 4788888876544    34555543


Q ss_pred             -CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          194 -EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       194 -~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                       ++.+ ++....+.|..+++....
T Consensus       276 ~~~~~-~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          276 SNGDI-IVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             TTSCE-EEEETTSCEEEEESCGGG
T ss_pred             cCCCE-EEEeCCCcEEEEeCCCCc
Confidence             5564 455567889999887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.28  E-value=0.003  Score=54.95  Aligned_cols=83  Identities=6%  Similarity=-0.150  Sum_probs=56.9

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcC
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSC  135 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~  135 (225)
                      ......++|+|++..++++-+.++.|..+++...   .. +... ........+++.++|+..++...            
T Consensus       149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---~~-~~~~~~~~~~v~~v~wspdg~~lasgs~------------  212 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---VK-VCATLPSTVAVTSVCWSPKGKQLAVGKQ------------  212 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS---EE-EEEEECGGGCEEEEEECTTSSCEEEEET------------
T ss_pred             CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---cc-eeeccCCCCceeEEEEcCCCCEEEEEcC------------
Confidence            4567899999984447777777899999998642   11 1111 11234678999999987766655            


Q ss_pred             hhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC
Q 047259          136 PDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP  179 (225)
Q Consensus       136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p  179 (225)
                                              .+.|..+|.+|+....+..+
T Consensus       213 ------------------------dg~v~iwd~~~~~~~~~~~~  232 (434)
T 2oit_A          213 ------------------------NGTVVQYLPTLQEKKVIPCP  232 (434)
T ss_dssp             ------------------------TSCEEEECTTCCEEEEECCC
T ss_pred             ------------------------CCcEEEEccCCcccccccCC
Confidence                                    45678888888777666544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.28  E-value=0.015  Score=47.35  Aligned_cols=85  Identities=11%  Similarity=0.019  Sum_probs=53.6

Q ss_pred             CCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-
Q 047259           36 PHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-  113 (225)
                      ..+.|..+|..+++..... ......+.|+++|+++ ++++-+..+.|..+++... ......+. ........+++.+ 
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~-~~~~~~~~-~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN-WALEQTFE-GHEHFVMCVAFNPK  151 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGT-TEEEEEEC-CCCSCEEEEEECTT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCC-cchhhhhc-ccCCcEEEEEECCC
Confidence            4678888888766654433 3345578999999998 5567777889999998642 01112222 1223345788887 


Q ss_pred             CCCEEEEeec
Q 047259          114 DGSFWVALIK  123 (225)
Q Consensus       114 ~G~l~v~~~~  123 (225)
                      ++.++++...
T Consensus       152 ~~~~l~sgs~  161 (304)
T 2ynn_A          152 DPSTFASGCL  161 (304)
T ss_dssp             CTTEEEEEET
T ss_pred             CCCEEEEEeC
Confidence            5666666544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.27  E-value=0.038  Score=46.54  Aligned_cols=140  Identities=11%  Similarity=0.030  Sum_probs=84.7

Q ss_pred             CCcEEEEEeCC-CCe-EEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC------CCCCC
Q 047259           36 PHGQLLKYDPE-LEE-TTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL------PGGPD  107 (225)
Q Consensus        36 ~~g~v~~~d~~-~~~-~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~------~g~Pd  107 (225)
                      ..|.|..||.. .++ +..+.......+.++|+||++ .+++-+..+.|..+++..+  .....+....      .....
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~  302 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVT  302 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCS
T ss_pred             CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceE
Confidence            46677777764 222 333333445678999999998 5677778889999998642  1122222110      01246


Q ss_pred             ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECC-CCCccc
Q 047259          108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDP-NATYIS  185 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p-~g~~~~  185 (225)
                      .+++.++|++.++...                                    .+.|...|.. ++.+..+... .+. -.
T Consensus       303 ~~~~s~~g~~l~~g~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h-~~  345 (380)
T 3iz6_a          303 SVAFSISGRLLFAGYS------------------------------------NGDCYVWDTLLAEMVLNLGTLQNSH-EG  345 (380)
T ss_dssp             EEEECSSSSEEEEECT------------------------------------TSCEEEEETTTCCEEEEECCSCSSC-CC
T ss_pred             EEEECCCCCEEEEEEC------------------------------------CCCEEEEECCCCceEEEEecccCCC-CC
Confidence            7899999998887655                                    4556666653 6665555321 121 22


Q ss_pred             ceeEEEEe-CCEEEEeeCCCCeEEEEeCCCc
Q 047259          186 FVTSAVEF-EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       186 ~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .++.+... ++.++++....+.|...++.+.
T Consensus       346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            35555543 5566666667778887777653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.27  E-value=0.034  Score=47.41  Aligned_cols=52  Identities=8%  Similarity=-0.001  Sum_probs=37.5

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..||..++...... ......+.+++++|++ ++++-+..+.|..+++..
T Consensus       213 D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          213 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence            678888888766644333 3345567899999998 556666778898888764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.26  E-value=0.0083  Score=49.11  Aligned_cols=86  Identities=8%  Similarity=0.015  Sum_probs=54.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEec---CCCEEEEEeCCCCEEEEEEecCCC-CCceeEEe-ccCCCCCCceEE
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSK---DENFVVVCESWKFRCRRYWLKGPR-QGRLESFI-EHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~---dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~-~~~~g~Pd~i~~  111 (225)
                      .|.|..+|..+++.............++++|   +++.|+++ ...+.|..|++.... ........ .........+++
T Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  267 (357)
T 3i2n_A          189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH  267 (357)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred             CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence            6789999988777655555556778999999   88866555 567899999886421 11111000 012233567888


Q ss_pred             CCCCC-EEEEeec
Q 047259          112 APDGS-FWVALIK  123 (225)
Q Consensus       112 d~~G~-l~v~~~~  123 (225)
                      .++|. ++++...
T Consensus       268 ~~~~~~~l~~~~~  280 (357)
T 3i2n_A          268 LPQNRELFLTAGG  280 (357)
T ss_dssp             ETTEEEEEEEEET
T ss_pred             CCCCCcEEEEEeC
Confidence            89887 4444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.26  E-value=0.0067  Score=55.37  Aligned_cols=39  Identities=5%  Similarity=-0.180  Sum_probs=27.3

Q ss_pred             cEEEEEeCCCCeEEEEecCcc-------------------ccceeEEecCCCEEEEEe
Q 047259           38 GQLLKYDPELEETTVLHEGFY-------------------FANGVALSKDENFVVVCE   76 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~-------------------~pnGi~~~~dg~~Lyv~~   76 (225)
                      +.|+.+|..+++...+.....                   ...+++|+|||+.|+++.
T Consensus       134 ~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            478899887776665543321                   226899999999887665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.24  E-value=0.01  Score=54.67  Aligned_cols=138  Identities=12%  Similarity=0.106  Sum_probs=74.6

Q ss_pred             CcEEEEEeCCCC--eEEEEecCccccceeEEecCCCEEEEEeCC---CCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           37 HGQLLKYDPELE--ETTVLHEGFYFANGVALSKDENFVVVCESW---KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~--~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      ...||.+|.+++  +++.+......-... ++++|+.||+....   +.+|+++++++......+.+......   -+.+
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~  333 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ---VLTV  333 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---CEEE
T ss_pred             CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC---EEEE
Confidence            358899987544  555554433222222 67778878766543   47999999876433334555543222   2255


Q ss_pred             CCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEE
Q 047259          112 APDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSA  190 (225)
Q Consensus       112 d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~  190 (225)
                      +++|+ |+++....                                  ....|..++.+|+....+..|...   ....+
T Consensus       334 s~~g~~lv~~~~~~----------------------------------g~~~l~~~d~~g~~~~~l~~p~~~---~~~~~  376 (693)
T 3iuj_A          334 HSGSGYLFAEYMVD----------------------------------ATARVEQFDYEGKRVREVALPGLG---SVSGF  376 (693)
T ss_dssp             EEETTEEEEEEEET----------------------------------TEEEEEEECTTSCEEEEECCSSSS---EEEEC
T ss_pred             EEECCEEEEEEEEC----------------------------------CeeEEEEEECCCCeeEEeecCCCc---eEEee
Confidence            55565 33333221                                  145788888888777777655321   11111


Q ss_pred             E--EeCCEEEEeeC---CCCeEEEEeCCCc
Q 047259          191 V--EFEDNLYMASI---QSKFVGKLPLNTP  215 (225)
Q Consensus       191 ~--~~~~~Lyv~~~---~~~~i~~~~~~~~  215 (225)
                      .  ++++.|+++..   .-..|..+++.+.
T Consensus       377 ~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          377 NGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             CCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             ecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            1  12455555432   2256666666543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.24  E-value=0.0053  Score=51.18  Aligned_cols=101  Identities=13%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEE--E-Eec-CccccceeEEecCCCEEEEEeCCC
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETT--V-LHE-GFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~--~-~~~-~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .+++.|+|++.+|-..                 .+.|..+|..+++..  . +.. ....-..++|+||+++| ++-+..
T Consensus        21 ~l~~sp~g~~las~~~-----------------D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~s~D   82 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGG-----------------DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL-ASASFD   82 (345)
T ss_dssp             EEEECTTSSCEEEEET-----------------TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEE-EEEETT
T ss_pred             EEEECCCCCEEEEEcC-----------------CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEE-EEEECC
Confidence            5677888876666443                 455555554444432  1 222 23456889999999855 455566


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +.|..++.+.........+. ...+....+++.++|+++++...
T Consensus        83 ~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~  125 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSR  125 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEEC
Confidence            77777776532111122222 12233467899999988777655

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.21  E-value=0.017  Score=47.42  Aligned_cols=100  Identities=9%  Similarity=0.046  Sum_probs=55.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC----
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW----   78 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~----   78 (225)
                      ..+++.+|| ++|+......   .     ....+...||.+|  +++++.+... ....  .++|||+.|+++...    
T Consensus       174 ~~~~~spdg-~~~~~~~~~~---~-----~~~~~~~~l~~~d--~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~  239 (347)
T 2gop_A          174 SSGIWHRDK-IVVNVPHREI---I-----PQYFKFWDIYIWE--DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKY  239 (347)
T ss_dssp             CEEEEETTE-EEEEEECCCS---S-----CCSSCCEEEEEEE--TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSC
T ss_pred             ccccCCCCe-EEEEEecccc---c-----ccccccccEEEeC--CCceEEeccC-ccee--eECCCCCEEEEEEccccCC
Confidence            467788888 7776433100   0     0001156899999  4777776554 2222  339999977665432    


Q ss_pred             ---CCEEEEEEecCCCCCceeEEeccCCCCCCc-eEECCCCCEEEEeec
Q 047259           79 ---KFRCRRYWLKGPRQGRLESFIEHLPGGPDN-INLAPDGSFWVALIK  123 (225)
Q Consensus        79 ---~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~-i~~d~~G~l~v~~~~  123 (225)
                         ...|+.++ .+    ....+.......... ++++ +| ++++...
T Consensus       240 ~~~~~~l~~~d-~~----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~  281 (347)
T 2gop_A          240 MSEHNKLYIYD-GK----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFE  281 (347)
T ss_dssp             CCSSCEEEEEC-SS----CEEESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred             ccccceEEEEC-CC----ceEeccccCCcccCCccEEc-Cc-EEEEEec
Confidence               35888887 32    333322222222334 7788 88 7766544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.19  E-value=0.006  Score=55.83  Aligned_cols=91  Identities=19%  Similarity=0.156  Sum_probs=59.2

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccc----cceeEEecCCCEEEEEeC--
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF----ANGVALSKDENFVVVCES--   77 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~----pnGi~~~~dg~~Lyv~~~--   77 (225)
                      ++...+||+++++..                  .+.|+.+|..+++.+.+..+...    ...++|||||++|.++..  
T Consensus        20 ~~~~s~dg~~~~~~~------------------d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~   81 (719)
T 1z68_A           20 FPNWISGQEYLHQSA------------------DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYS   81 (719)
T ss_dssp             CCEESSSSEEEEECT------------------TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEE
T ss_pred             ccEECCCCeEEEEcC------------------CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCc
Confidence            567788887555532                  46899999888888777765433    678999999998866543  


Q ss_pred             ------CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           78 ------WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        78 ------~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                            ..+.|+.++++++..-....    +......+++.|||+
T Consensus        82 ~~~~~s~~~~i~~~d~~~g~~~~~~~----l~~~~~~~~~SPDG~  122 (719)
T 1z68_A           82 KLWRYSYTATYYIYDLSNGEFVRGNE----LPRPIQYLCWSPVGS  122 (719)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECCSSC----CCSSBCCEEECSSTT
T ss_pred             eeEEeecceEEEEEECCCCcccccee----cCcccccceECCCCC
Confidence                  24689999887531100011    122244566666665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.19  E-value=0.028  Score=51.78  Aligned_cols=84  Identities=11%  Similarity=0.061  Sum_probs=52.0

Q ss_pred             CcEEEEEeCCCC-eEEEEe-cCccccceeEEec-CCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELE-ETTVLH-EGFYFANGVALSK-DENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~-~~~~~~-~~~~~pnGi~~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .|.|..||..++ ...... ........++|+| +++ ++++.+..+.|..+++...  .....+..........+++.+
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~  194 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQS--TPNFTLTTGQERGVNYVDYYP  194 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCS--SCSEEEECCCTTCCCEEEECC
T ss_pred             CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--cceeEEecCCCCCEEEEEEEE
Confidence            567777776544 333333 3345578999999 665 5566667789999998642  112222222224456788887


Q ss_pred             --CCCEEEEeec
Q 047259          114 --DGSFWVALIK  123 (225)
Q Consensus       114 --~G~l~v~~~~  123 (225)
                        +|.++++...
T Consensus       195 ~~~~~~l~~~~~  206 (814)
T 3mkq_A          195 LPDKPYMITASD  206 (814)
T ss_dssp             STTCCEEEEECT
T ss_pred             CCCCCEEEEEeC
Confidence              8887776655

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.18  E-value=0.032  Score=46.77  Aligned_cols=126  Identities=13%  Similarity=0.115  Sum_probs=76.7

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CC-CCCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LP-GGPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~-g~Pd~i~~d~  113 (225)
                      ..|.|+.+|..+|+..-... .....+++.+  ++.||++.. .+.|+.++.+++   .. .+... .. .......+. 
T Consensus       247 ~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG---~~-~w~~~~~~~~~~~~~~~~-  317 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKRE-LGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGG---VT-LWTQSDLLHRLLTSPVLY-  317 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-CCCEEEEEEE--TTEEEEEET-TCCEEEEETTTC---CE-EEEECTTTTSCCCCCEEE-
T ss_pred             cCcEEEEEECCCCcEEeecc-CCCCCCceEE--CCEEEEEcC-CCeEEEEECCCC---cE-EEeecccCCCcccCCEEE-
Confidence            36789999987776543222 2334556665  456999875 468999998643   22 22211 11 122334443 


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEE
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVE  192 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~  192 (225)
                      +|.||++..                                     .+.+..+|+ +|+++..+..+.+...   +..+.
T Consensus       318 ~~~l~v~~~-------------------------------------~g~l~~~d~~tG~~~~~~~~~~~~~~---~~~~~  357 (376)
T 3q7m_A          318 NGNLVVGDS-------------------------------------EGYLHWINVEDGRFVAQQKVDSSGFQ---TEPVA  357 (376)
T ss_dssp             TTEEEEECT-------------------------------------TSEEEEEETTTCCEEEEEECCTTCBC---SCCEE
T ss_pred             CCEEEEEeC-------------------------------------CCeEEEEECCCCcEEEEEecCCCcce---eCCEE
Confidence            578888763                                     357888996 5898887776433322   22344


Q ss_pred             eCCEEEEeeCCCCeEEEEe
Q 047259          193 FEDNLYMASIQSKFVGKLP  211 (225)
Q Consensus       193 ~~~~Lyv~~~~~~~i~~~~  211 (225)
                      .+++||+++.. +.|..++
T Consensus       358 ~~~~l~v~~~~-G~l~~~~  375 (376)
T 3q7m_A          358 ADGKLLIQAKD-GTVYSIT  375 (376)
T ss_dssp             ETTEEEEEBTT-SCEEEEE
T ss_pred             ECCEEEEEeCC-CEEEEEe
Confidence            68999999754 6677664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.17  E-value=0.061  Score=44.07  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..+|..+++..... ........++++|+++ ++++-+..+.|..+++++
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence            678888888777654433 3345568899999998 556777778898888864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.009  Score=49.52  Aligned_cols=85  Identities=18%  Similarity=0.094  Sum_probs=55.5

Q ss_pred             CcEEEEEeCCCCeEEEEec--CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHE--GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~--~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      .|.|..+|..+++......  .......++++||++ ++++-...+.|..+++...... ...+.....+....+++.++
T Consensus       148 dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~  225 (343)
T 3lrv_A          148 RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADN  225 (343)
T ss_dssp             TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTT
T ss_pred             CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCC
Confidence            6788888887776644432  223478899999998 5555567789999998753111 02232112334568899999


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      |.+.++...
T Consensus       226 g~~l~s~~~  234 (343)
T 3lrv_A          226 GYWMVVECD  234 (343)
T ss_dssp             SSEEEEEES
T ss_pred             CCEEEEEeC
Confidence            987777654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.12  E-value=0.02  Score=48.41  Aligned_cols=87  Identities=7%  Similarity=-0.065  Sum_probs=59.9

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCE-SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+.|..||..+++.............++|+|+++.|+++. ...+.|..+++..........+. ...+....+++.++
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~d  360 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPD  360 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTT
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCC
Confidence            37889999987777665555566789999999999776653 36789999998642111111111 22345678999999


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      |.+.++...
T Consensus       361 g~~l~s~~~  369 (401)
T 4aez_A          361 GRILSTAAS  369 (401)
T ss_dssp             SSEEEEECT
T ss_pred             CCEEEEEeC
Confidence            997777655

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.037  Score=44.20  Aligned_cols=83  Identities=11%  Similarity=0.070  Sum_probs=47.6

Q ss_pred             CcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCc-eeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGR-LESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      .|.|..||..+++..... ........++++|+++.|+.+ ..++.|..+++....... ...+. ........+++  +
T Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~  113 (313)
T 3odt_A           38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG-GKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--Q  113 (313)
T ss_dssp             TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--E
T ss_pred             CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe-cCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--c
Confidence            677888887656544433 345567899999999855554 456788888875421111 22221 11222345666  4


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      ++++++...
T Consensus       114 ~~~l~~~~~  122 (313)
T 3odt_A          114 DGVVISGSW  122 (313)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEEeC
Confidence            555555544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.12  E-value=0.0029  Score=52.73  Aligned_cols=86  Identities=8%  Similarity=-0.103  Sum_probs=48.2

Q ss_pred             CcEEEEEeCCCCe----EEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCC-------------ceeEE
Q 047259           37 HGQLLKYDPELEE----TTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQG-------------RLESF   98 (225)
Q Consensus        37 ~g~v~~~d~~~~~----~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~-------------~~~~~   98 (225)
                      .+.|..+|..+++    ...+.. .......++++|+++.| ++-+..+.|..+++......             ..+..
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL-AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC  199 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE-EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred             CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence            5667777765443    233333 44567899999999855 45555678888887521100             01111


Q ss_pred             ec-cCCCCCCceEECCCCCEEEEeec
Q 047259           99 IE-HLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        99 ~~-~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .. ...+....++++++|+++++...
T Consensus       200 ~~~~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          200 AEYPSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             ECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred             hcccCCceEEEEEECCCCCEEEEEeC
Confidence            11 11223467889999986666554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.11  E-value=0.047  Score=46.27  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe------------EEEEecCc------------cc
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE------------TTVLHEGF------------YF   59 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~------------~~~~~~~~------------~~   59 (225)
                      .+++.++|++.++-..                 .|.|..|+..+++            ...+....            ..
T Consensus        33 ~v~~s~~g~~la~g~~-----------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           33 TVEFNHSGELLATGDK-----------------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             EEEECSSSSEEEEEET-----------------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             EEEECCCCCEEEEEcC-----------------CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence            5677888877666443                 5667666655443            22222222            44


Q ss_pred             cceeEEecCC--CEEEEEeCCCCEEEEEEec
Q 047259           60 ANGVALSKDE--NFVVVCESWKFRCRRYWLK   88 (225)
Q Consensus        60 pnGi~~~~dg--~~Lyv~~~~~~~I~~~~~~   88 (225)
                      .+.++|+|++  . ++++-+..+.|..+++.
T Consensus        96 V~~l~~~~~~~~~-~l~s~s~d~~i~iw~~~  125 (447)
T 3dw8_B           96 INKIRWLPQKNAA-QFLLSTNDKTIKLWKIS  125 (447)
T ss_dssp             CCEEEECCCCSSS-EEEEEECSSCEEEEEEE
T ss_pred             eEEEEEcCCCCcc-eEEEeCCCCeEEEEecc
Confidence            6889999998  5 44555677888888775

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.11  E-value=0.0041  Score=51.11  Aligned_cols=84  Identities=12%  Similarity=-0.024  Sum_probs=55.4

Q ss_pred             CcEEEEEeCCCCeEEEEec-CccccceeEEec-CCCEEEEEeCCCCEEEEEEecCCCCCceeEEe--ccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELEETTVLHE-GFYFANGVALSK-DENFVVVCESWKFRCRRYWLKGPRQGRLESFI--EHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--~~~~g~Pd~i~~d  112 (225)
                      .|.|..||..+++...... .......++|+| +++ ++++-...+.|..+++...  .....+.  .........++++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTD--TLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTT--EEEEEECSTTSCSSCEEEEEEC
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecC--eEEEEecccccccCceeEEEEC
Confidence            6789999987666544443 455678999999 777 5556566789999998642  1222221  1123345688899


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      ++|++.++...
T Consensus       171 ~~~~~l~~~~~  181 (366)
T 3k26_A          171 LLGEKIMSCGM  181 (366)
T ss_dssp             TTSSEEEEEET
T ss_pred             CCCCEEEEecC
Confidence            98887666554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.10  E-value=0.0087  Score=51.44  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=53.7

Q ss_pred             CCcEEEEEeCCCCeEEEEe---cCccccceeEEec-CCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCce
Q 047259           36 PHGQLLKYDPELEETTVLH---EGFYFANGVALSK-DENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNI  109 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i  109 (225)
                      ..|.|..||..+++.....   .....-+.|+|+| |++ ++++-+.++.|..+++++.   ....+...  .......+
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~  215 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYASSMEGTTRLQDFKGN---ILRVFASSDTINIWFCSL  215 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEEECSSSCEEEEETTSC---EEEEEECCSSCSCCCCCE
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEEEeCCCEEEEeeccCC---ceeEEeccCCCCccEEEE
Confidence            3678888887655433332   2234568999998 566 5667777889999988652   33334322  11223568


Q ss_pred             EECCCCCEEEEeec
Q 047259          110 NLAPDGSFWVALIK  123 (225)
Q Consensus       110 ~~d~~G~l~v~~~~  123 (225)
                      +++++|.+.++...
T Consensus       216 ~~~~~~~~l~~g~~  229 (435)
T 4e54_B          216 DVSASSRMVVTGDN  229 (435)
T ss_dssp             EEETTTTEEEEECS
T ss_pred             EECCCCCEEEEEeC
Confidence            88999988777654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.09  E-value=0.026  Score=52.62  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=56.0

Q ss_pred             cEEEc-CCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC-eEEEEecCcc-ccceeEEecCCCEEEEEeCC-
Q 047259            4 DVIEA-SDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE-ETTVLHEGFY-FANGVALSKDENFVVVCESW-   78 (225)
Q Consensus         4 dv~~~-~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~~~~~-~pnGi~~~~dg~~Lyv~~~~-   78 (225)
                      ++.+. |||+ |.|+.+..             +.....|+.+|.++| +.  +...+. ...+++|+|||+.||++... 
T Consensus       178 ~~~~S~PDG~~lAy~~~~~-------------G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMS-------------GNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             EEEECTTTTCEEEEEEESS-------------SSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECT
T ss_pred             eeEecCCCCCEEEEEEeCC-------------CCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECC
Confidence            35677 8885 55554420             112346999998877 52  111121 24589999999878666542 


Q ss_pred             ---CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCE
Q 047259           79 ---KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSF  117 (225)
Q Consensus        79 ---~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l  117 (225)
                         ..+|+++++.++......++.......--++.+++||+.
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~  284 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT  284 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE
Confidence               147888888653222223332111122235678899974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.09  E-value=0.044  Score=44.95  Aligned_cols=84  Identities=12%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCC-----EEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDEN-----FVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~-----~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      .+.|..+|.+...+..+.........+++.|.+.     .++++-...+.|..+++...  .....+.. .......+++
T Consensus       128 D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~-h~~~v~~~~~  204 (319)
T 3frx_A          128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF--QIEADFIG-HNSNINTLTA  204 (319)
T ss_dssp             TSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT--EEEEEECC-CCSCEEEEEE
T ss_pred             CCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc--hhheeecC-CCCcEEEEEE
Confidence            5667777776444444444445567788887532     25667777889999988642  11122221 2233467899


Q ss_pred             CCCCCEEEEeec
Q 047259          112 APDGSFWVALIK  123 (225)
Q Consensus       112 d~~G~l~v~~~~  123 (225)
                      .++|++.++...
T Consensus       205 sp~g~~l~s~~~  216 (319)
T 3frx_A          205 SPDGTLIASAGK  216 (319)
T ss_dssp             CTTSSEEEEEET
T ss_pred             cCCCCEEEEEeC
Confidence            999998777655

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.07  E-value=0.042  Score=46.01  Aligned_cols=132  Identities=9%  Similarity=0.087  Sum_probs=72.1

Q ss_pred             CcEEEEEeCCCCeEEE--EecC---------ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCC
Q 047259           37 HGQLLKYDPELEETTV--LHEG---------FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGG  105 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~--~~~~---------~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~  105 (225)
                      .+.|+.+|.++|+..-  -...         ......++.+  ++.||+... .+.|+.++.+++   +. .+....++.
T Consensus        62 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-~g~l~a~d~~tG---~~-~W~~~~~~~  134 (376)
T 3q7m_A           62 AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGSE-KAQVYALNTSDG---TV-AWQTKVAGE  134 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEET-TSEEEEEETTTC---CE-EEEEECSSC
T ss_pred             CCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEcC-CCEEEEEECCCC---CE-EEEEeCCCc
Confidence            4689999987776432  1211         1112334443  346888764 479999998642   21 121112211


Q ss_pred             C-CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCc
Q 047259          106 P-DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATY  183 (225)
Q Consensus       106 P-d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~  183 (225)
                      . ....++ +|.+|++..                                     .+.|..+|+ +|+++..+..+....
T Consensus       135 ~~~~p~~~-~~~v~v~~~-------------------------------------~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          135 ALSRPVVS-DGLVLIHTS-------------------------------------NGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             CCSCCEEE-TTEEEEECT-------------------------------------TSEEEEEETTTCCEEEEEECCC---
T ss_pred             eEcCCEEE-CCEEEEEcC-------------------------------------CCeEEEEECCCCcEEEEEeCCCCce
Confidence            1 122333 578888653                                     357888997 588887776532210


Q ss_pred             -ccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          184 -ISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       184 -~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                       ....+..+..++.||++.. +..|..+++.+
T Consensus       177 ~~~~~~~~~~~~~~v~~g~~-~g~l~~~d~~t  207 (376)
T 3q7m_A          177 SLRGESAPTTAFGAAVVGGD-NGRVSAVLMEQ  207 (376)
T ss_dssp             --CCCCCCEEETTEEEECCT-TTEEEEEETTT
T ss_pred             eecCCCCcEEECCEEEEEcC-CCEEEEEECCC
Confidence             0111223345788888753 46777777643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.07  E-value=0.012  Score=54.60  Aligned_cols=106  Identities=12%  Similarity=0.094  Sum_probs=62.7

Q ss_pred             CcEEEEEeCCCC--e-EEEEecCccccceeEEecCCCEEEEEeCC---CCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259           37 HGQLLKYDPELE--E-TTVLHEGFYFANGVALSKDENFVVVCESW---KFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN  110 (225)
Q Consensus        37 ~g~v~~~d~~~~--~-~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~---~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~  110 (225)
                      ...|+.+|.+++  + ++.+.......... +++||+.||+....   +.+|+++++++.. +..+.++........+++
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~  370 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVG  370 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEE
Confidence            568898887656  4 55655443333333 45889888776542   5689999987522 234444432222234556


Q ss_pred             ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC
Q 047259          111 LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP  179 (225)
Q Consensus       111 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p  179 (225)
                      ++ ++.++++....                                  ....|+.++.+|+....+..|
T Consensus       371 ~~-~~~lv~~~~~d----------------------------------g~~~l~~~~~~g~~~~~l~~~  404 (741)
T 1yr2_A          371 IA-GNRLFASYIHD----------------------------------AKSQVLAFDLDGKPAGAVSLP  404 (741)
T ss_dssp             EE-BTEEEEEEEET----------------------------------TEEEEEEEETTSCEEEECBCS
T ss_pred             EE-CCEEEEEEEEC----------------------------------CEEEEEEEeCCCCceeeccCC
Confidence            65 45666665441                                  145777888777766666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.06  E-value=0.0077  Score=49.16  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=62.0

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe----EEEEecCccccceeEEecCCC-EEEEEeC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE----TTVLHEGFYFANGVALSKDEN-FVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~----~~~~~~~~~~pnGi~~~~dg~-~Lyv~~~   77 (225)
                      ..+++.++|++.++-..                 .|.|..|+..+++    .............++|+|+++ .|+.+. 
T Consensus        15 ~~~~~s~~~~~l~~~~~-----------------d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-   76 (342)
T 1yfq_A           15 SDIKIIPSKSLLLITSW-----------------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-   76 (342)
T ss_dssp             EEEEEEGGGTEEEEEET-----------------TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-
T ss_pred             EEEEEcCCCCEEEEEcC-----------------CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-
Confidence            35677778776665433                 4666666654444    444444456678999999998 666555 


Q ss_pred             CCCEEEEEEe-cCCCCCceeEEecc-CCCCCCceEECCCCCEEEEeec
Q 047259           78 WKFRCRRYWL-KGPRQGRLESFIEH-LPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        78 ~~~~I~~~~~-~~~~~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ..+.|..+++ ++.   ....+... .......+++.+ ++++++...
T Consensus        77 ~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~  120 (342)
T 1yfq_A           77 VQGEILKVDLIGSP---SFQALTNNEANLGICRICKYG-DDKLIAASW  120 (342)
T ss_dssp             TTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred             CCCeEEEEEeccCC---ceEeccccCCCCceEEEEeCC-CCEEEEEcC
Confidence            5679999998 653   22333210 223346788888 777666655

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.06  E-value=0.068  Score=44.56  Aligned_cols=84  Identities=12%  Similarity=0.093  Sum_probs=53.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecC-ccccceeEEec--CCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSK--DENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~--dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      ..|.|..+|..+++......+ ......++++|  +++ ++++-+..+.|..+++...  .....+. ........+++.
T Consensus       174 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~--~~~~~~~-~h~~~v~~v~~~  249 (354)
T 2pbi_B          174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSG--QCVQAFE-THESDVNSVRYY  249 (354)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTC--CEEEEEC-CCSSCEEEEEEC
T ss_pred             CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCC--cEEEEec-CCCCCeEEEEEe
Confidence            367888888877765444433 33456777876  455 5566667789999998642  1122232 222335678999


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      ++|+++++...
T Consensus       250 p~~~~l~s~s~  260 (354)
T 2pbi_B          250 PSGDAFASGSD  260 (354)
T ss_dssp             TTSSEEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            99988777655

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.02  E-value=0.023  Score=47.26  Aligned_cols=85  Identities=24%  Similarity=0.216  Sum_probs=54.5

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEec-CCCEEE-EEeCCC----CEEEEEEecCCCCCceeEEeccCCC-CCC
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSK-DENFVV-VCESWK----FRCRRYWLKGPRQGRLESFIEHLPG-GPD  107 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~-dg~~Ly-v~~~~~----~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd  107 (225)
                      .....|+.+|..+++.+.+.........++|+| |++.|+ +++...    .+|+.+++++.   ..+.+....+. .+.
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---NVRKIKEHAEGESCT  241 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---CCEESSCCCTTEEEE
T ss_pred             CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---ceeEeeccCCCcccc
Confidence            345689999988888777765556678899999 787564 444222    48999998653   22222221111 245


Q ss_pred             ceEECCCCC-EEEEee
Q 047259          108 NINLAPDGS-FWVALI  122 (225)
Q Consensus       108 ~i~~d~~G~-l~v~~~  122 (225)
                      .+++.++|+ |+++..
T Consensus       242 ~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEECTTSSCEEEEEE
T ss_pred             ceEECCCCCEEEEEec
Confidence            678999997 555443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.01  E-value=0.057  Score=48.66  Aligned_cols=84  Identities=11%  Similarity=0.050  Sum_probs=54.5

Q ss_pred             CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec------cCCCCCCce
Q 047259           37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE------HLPGGPDNI  109 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~------~~~g~Pd~i  109 (225)
                      .+.|..+|..+++......+ ....+.++|+|||+ ++++-+.++.|..++...+  .....+..      ...+....+
T Consensus       169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g--~~~~~~~~~~~~~~~h~~~V~~v  245 (611)
T 1nr0_A          169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSVFGL  245 (611)
T ss_dssp             TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC--CEEEECBCTTSSSCSSSSCEEEE
T ss_pred             CCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCC--cEeeeeccccccccccCCCEEEE
Confidence            56677777665554444433 45678999999998 6667777889999987532  11122211      112345689


Q ss_pred             EECCCCCEEEEeec
Q 047259          110 NLAPDGSFWVALIK  123 (225)
Q Consensus       110 ~~d~~G~l~v~~~~  123 (225)
                      ++.++|++.++...
T Consensus       246 ~~spdg~~l~s~s~  259 (611)
T 1nr0_A          246 TWSPDGTKIASASA  259 (611)
T ss_dssp             EECTTSSEEEEEET
T ss_pred             EECCCCCEEEEEeC
Confidence            99999998877655

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.01  E-value=0.017  Score=52.86  Aligned_cols=53  Identities=21%  Similarity=0.070  Sum_probs=37.2

Q ss_pred             CCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           36 PHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ..|.|..+|..+++..... ........++++||++. +++-+..+.|..++..+
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTS
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCC
Confidence            3678888888766554433 33455688999999984 45666778888887643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.01  E-value=0.067  Score=49.27  Aligned_cols=52  Identities=10%  Similarity=0.151  Sum_probs=36.1

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC-----------------CCeEEEEeCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ-----------------SKFVGKLPLN  213 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~-----------------~~~i~~~~~~  213 (225)
                      .+.+..+|.. |+++..+..+.+. ...+... ..+|+.||+...                 .+.+..|.+.
T Consensus       497 dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~y-~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          497 DGRLVAYHAATGEKLWEAPTGTGV-VAAPSTY-MVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             CCcEEEEECCCCceeeeeeCCCCc-ccCCEEE-EeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            5688899974 9999999887653 3223222 367888887522                 4888999887

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.11  Score=42.64  Aligned_cols=85  Identities=13%  Similarity=0.021  Sum_probs=50.4

Q ss_pred             CcEEEEEeCCCCeEEEE---ecCccccceeEEecC--CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           37 HGQLLKYDPELEETTVL---HEGFYFANGVALSKD--ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~---~~~~~~pnGi~~~~d--g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      .|.|..||..+++...+   .........++|+|+  ++.| ++-...+.|..+++..........+. ........+++
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~  155 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-LVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASW  155 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-EEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEE
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEE-EEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEE
Confidence            56677777665653222   233456789999999  7744 55556789999998753222222222 12223456777


Q ss_pred             CC-------------CCCEEEEeec
Q 047259          112 AP-------------DGSFWVALIK  123 (225)
Q Consensus       112 d~-------------~G~l~v~~~~  123 (225)
                      .+             +|.++++...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~  180 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGA  180 (379)
T ss_dssp             CCCC----------CTTCEEEEEET
T ss_pred             cCccccccccccCCCCCCEEEEEeC
Confidence            77             5776666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.083  Score=43.54  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=50.5

Q ss_pred             CCcEEEEEeCCCCeEE--EEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCCCCCC---c
Q 047259           36 PHGQLLKYDPELEETT--VLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLPGGPD---N  108 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~--~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd---~  108 (225)
                      ..|.|..||..+++..  .+.. .....+.++|+|+++.|..+.  .+.|..+++.... ......+.  ....+-   .
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~  265 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVT  265 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCB--C-----CCEE
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccc--cccccccceE
Confidence            3678888887766533  2222 345678999999998776665  3489999986421 11111110  011232   3


Q ss_pred             eEECCCCCEEEEeec
Q 047259          109 INLAPDGSFWVALIK  123 (225)
Q Consensus       109 i~~d~~G~l~v~~~~  123 (225)
                      ++++++|++.++..+
T Consensus       266 ~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          266 YDIDDSGKNMIAYSN  280 (343)
T ss_dssp             EEECTTSSEEEEEET
T ss_pred             EEECCCCCEEEEecC
Confidence            999999998777544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.035  Score=47.22  Aligned_cols=141  Identities=7%  Similarity=0.026  Sum_probs=84.8

Q ss_pred             CcEEEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE---
Q 047259           37 HGQLLKYDPELEETTVLHE---GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN---  110 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~---~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~---  110 (225)
                      .|.|..+|..+++......   .......++++|+++.| ++-+..+.|..+++...  .....+.-........++   
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL-ILGTTRGIIDIWDIRFN--VLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEE-EEEETTSCEEEEETTTT--EEEEEEBCTTCEEEEEEEECT
T ss_pred             CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEE-EEEcCCCeEEEEEcCCc--cEEEEEecCCCCceEEEEecc
Confidence            6889999987776554443   34567899999999855 45556688999998642  111122100111123453   


Q ss_pred             -ECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCC------
Q 047259          111 -LAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNAT------  182 (225)
Q Consensus       111 -~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~------  182 (225)
                       +.++|.+.++...                                    .+.|...|.. |+.+..+....+.      
T Consensus       268 ~~s~~~~~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  311 (437)
T 3gre_A          268 FYGKNSVIVVGGSS------------------------------------KTFLTIWNFVKGHCQYAFINSDEQPSMEHF  311 (437)
T ss_dssp             TTCTTEEEEEEEST------------------------------------TEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred             ccCCCccEEEEEcC------------------------------------CCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence             3345655555544                                    4566666654 6666666532211      


Q ss_pred             ----------------cccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          183 ----------------YISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       183 ----------------~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                                      ....++.+...++.++++....+.|...++....
T Consensus       312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          312 LPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             SCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred             cccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence                            0122455566677888888888999999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.96  E-value=0.038  Score=53.67  Aligned_cols=99  Identities=9%  Similarity=0.012  Sum_probs=60.7

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      .+++.++|+..++-..                 .|.|..||..+++...... .......++|+||+++| ++-+.++.|
T Consensus       620 ~~~~s~~~~~l~s~~~-----------------d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v  681 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGA-----------------DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKV  681 (1249)
T ss_dssp             EEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEE
T ss_pred             EEEECCCCCEEEEEeC-----------------CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEE-EEEeCCCeE
Confidence            4667777776666433                 6788888887666544443 34556889999999855 455567899


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECCCC--CEEEEeec
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG--SFWVALIK  123 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G--~l~v~~~~  123 (225)
                      ..+++.++  .....+. ...+....+++.+++  .+.++...
T Consensus       682 ~vwd~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          682 KIWDSATG--KLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             EEEETTTC--CEEEEEE-CCSSCEEEEEECSSSSCCEEEEEET
T ss_pred             EEEECCCC--ceEEEEc-CCCCcEEEEEEecCCCceEEEEEeC
Confidence            99998642  1222332 222334567777743  34444433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.96  E-value=0.0098  Score=57.24  Aligned_cols=81  Identities=14%  Similarity=-0.006  Sum_probs=53.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCcc-ccceeEEecCCCEEEEEeCCCCEEE-EEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFY-FANGVALSKDENFVVVCESWKFRCR-RYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~-~pnGi~~~~dg~~Lyv~~~~~~~I~-~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      .+.|+.++..+++...+..... ....++|+ ||+.|+++.. .++|+ .+++++.   ....+. .....+..++++++
T Consensus       316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~---~~~~l~-~~~~~~~~~~~SpD  389 (1045)
T 1k32_A          316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTG---KAEKFE-ENLGNVFAMGVDRN  389 (1045)
T ss_dssp             TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTC---CEEECC-CCCCSEEEEEECTT
T ss_pred             cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCC---CceEec-CCccceeeeEECCC
Confidence            3578888877676655443333 67789999 9987766554 67898 8887652   232322 22234568999999


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      |+..+....
T Consensus       390 G~~la~~~~  398 (1045)
T 1k32_A          390 GKFAVVAND  398 (1045)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEECC
Confidence            986665433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.96  E-value=0.017  Score=48.12  Aligned_cols=152  Identities=11%  Similarity=0.076  Sum_probs=85.7

Q ss_pred             CcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--------------cCccccceeEEec
Q 047259            3 NDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--------------EGFYFANGVALSK   67 (225)
Q Consensus         3 ndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--------------~~~~~pnGi~~~~   67 (225)
                      +.+++.+ +|++.++-..                 .|.|..||..+++.....              ........++|+|
T Consensus        47 ~~~~~s~~~~~~l~~~~~-----------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           47 NTLDIEPVEGRYMLSGGS-----------------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             EEEEECTTTCCEEEEEET-----------------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             EEEEEecCCCCEEEEEcC-----------------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            4577888 8877776443                 567777776544321111              1334568899999


Q ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC---CCCEEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259           68 DENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP---DGSFWVALIKMNQTGVRAIQSCPDKWKLLQA  144 (225)
Q Consensus        68 dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~---~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~  144 (225)
                      ++..++++....+.|..+++...   ....... .......+++.+   ++.+.++...                     
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  164 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR---------------------  164 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES---------------------
T ss_pred             CCCcEEEEEeCCCeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcC---------------------
Confidence            44336666667789999998642   2211111 223334555555   3445555544                     


Q ss_pred             hhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCc
Q 047259          145 YPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       145 ~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                                     .+.|..+|.. ++.+..+....+    .++.+...  +..++++....+.|..+++...
T Consensus       165 ---------------~~~v~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          165 ---------------GPKVQLCDLKSGSCSHILQGHRQ----EILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             ---------------SSSEEEEESSSSCCCEEECCCCS----CEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             ---------------CCeEEEEeCCCcceeeeecCCCC----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence                           3345555543 555556654333    24444443  3336666667778888877654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.94  E-value=0.038  Score=45.15  Aligned_cols=138  Identities=10%  Similarity=0.021  Sum_probs=80.5

Q ss_pred             CcEEEEEeCCCCeEEEEec------CccccceeEEecC----CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCC
Q 047259           37 HGQLLKYDPELEETTVLHE------GFYFANGVALSKD----ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGP  106 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~------~~~~pnGi~~~~d----g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~P  106 (225)
                      .+.|..||..+++......      .......++|+|+    ++ ++++-...+.|..+++...  .....+. ......
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~--~~~~~~~-~~~~~i  118 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVAGSRGIIRIINPITM--QCIKHYV-GHGNAI  118 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEEETTCEEEEECTTTC--CEEEEEE-SCCSCE
T ss_pred             CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEecCCCEEEEEEchhc--eEeeeec-CCCCcE
Confidence            4566667665443222222      2234688999999    44 5556666789999988642  1222232 223345


Q ss_pred             CceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcc
Q 047259          107 DNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYI  184 (225)
Q Consensus       107 d~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~  184 (225)
                      ..+++.+ +++++++...                                    .+.|...|.+ ++.+..+..-.+. -
T Consensus       119 ~~~~~~~~~~~~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~-~  161 (366)
T 3k26_A          119 NELKFHPRDPNLLLSVSK------------------------------------DHALRLWNIQTDTLVAIFGGVEGH-R  161 (366)
T ss_dssp             EEEEECSSCTTEEEEEET------------------------------------TSCEEEEETTTTEEEEEECSTTSC-S
T ss_pred             EEEEECCCCCCEEEEEeC------------------------------------CCeEEEEEeecCeEEEEecccccc-c
Confidence            7889999 8887777655                                    3455666654 6666666321111 1


Q ss_pred             cceeEEEEe-CCEEEEeeCCCCeEEEEeCCCc
Q 047259          185 SFVTSAVEF-EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       185 ~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ..++.+... ++.++++....+.|..+++...
T Consensus       162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  193 (366)
T 3k26_A          162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSK  193 (366)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESCSH
T ss_pred             CceeEEEECCCCCEEEEecCCCCEEEEECCCC
Confidence            235555543 4445555556788988888754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=96.92  E-value=0.042  Score=44.78  Aligned_cols=105  Identities=10%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecC---CCEEEEEeC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKD---ENFVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~d---g~~Lyv~~~   77 (225)
                      +++++.++|..+++-.+.             ....|.|..||..+++.....  ........++|+|+   ++.| ++-.
T Consensus        22 ~~~~~~p~~~~l~~~~s~-------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~~~~   87 (357)
T 3i2n_A           22 FDCKWVPCSAKFVTMGNF-------------ARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYL-ATGD   87 (357)
T ss_dssp             EEEEECTTSSEEEEEEC---------------CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCE-EEEE
T ss_pred             EEEEEcCCCceEEEecCc-------------cCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceE-EEec
Confidence            467788888544432220             012577877777666654432  33445688999998   5644 4555


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCce------EECCCCCEEEEeec
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI------NLAPDGSFWVALIK  123 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i------~~d~~G~l~v~~~~  123 (225)
                      ..+.|..+++.... .....+.. ..+....+      ++.++|++.++...
T Consensus        88 ~dg~i~iwd~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~  137 (357)
T 3i2n_A           88 FGGNLHIWNLEAPE-MPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSR  137 (357)
T ss_dssp             TTSCEEEECTTSCS-SCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEET
T ss_pred             CCCeEEEEeCCCCC-ccEEEEEe-cccceEEEeeccccccCCCccEEEEEeC
Confidence            67889999887531 12223321 11212233      56788887776654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.92  E-value=0.047  Score=45.34  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             CCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEe--------------
Q 047259           35 KPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFI--------------   99 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~--------------   99 (225)
                      ...|.|..+|..+++...... .......++++|+++.++++-...+.|..+++.... .....+.              
T Consensus       163 ~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~  241 (408)
T 4a11_B          163 TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS-GCLITLDQHNGKKSQAVESAN  241 (408)
T ss_dssp             ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS-CCSEECCTTTTCSCCCTTTSS
T ss_pred             cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC-cccccccccccccceeecccc
Confidence            346778888876555433333 345568999999998777777788899999986421 0111110              


Q ss_pred             ccCCCCCCceEECCCCCEEEEeec
Q 047259          100 EHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus       100 ~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ....+....+++.++|++.++...
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccCceeEEEEcCCCCEEEEecC
Confidence            001123457888888886665544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.91  E-value=0.03  Score=53.90  Aligned_cols=81  Identities=14%  Similarity=0.184  Sum_probs=55.9

Q ss_pred             CcEEE-EEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLL-KYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~-~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .+.++ .++..+++.+.+.........++|+|||++|+++.. .+.|+.++++++   ..........+....+++++||
T Consensus       357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg---~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETG---KPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTS
T ss_pred             CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECCCC---ceEEeccCCCCCccceEECCCC
Confidence            35788 888876776666544466789999999998876654 569999998753   3333332233344789999999


Q ss_pred             CEEEEe
Q 047259          116 SFWVAL  121 (225)
Q Consensus       116 ~l~v~~  121 (225)
                      +..+..
T Consensus       433 ~~la~~  438 (1045)
T 1k32_A          433 RFIAYG  438 (1045)
T ss_dssp             CEEEEE
T ss_pred             CeEEEE
Confidence            855444

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.89  E-value=0.051  Score=48.93  Aligned_cols=52  Identities=13%  Similarity=0.064  Sum_probs=36.7

Q ss_pred             CcEEEEEeCCCCeEEEEe--------cCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLH--------EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~--------~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..+|..+++.....        .......+++|+|||+ ++++-+.++.|..+++..
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVAT  270 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCC
Confidence            667778887666654433        2234568999999998 456666778999898764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.1  Score=42.68  Aligned_cols=85  Identities=8%  Similarity=0.072  Sum_probs=50.2

Q ss_pred             CcEEEEEeCCCCe---EEEEecCccccceeEEec-------------CCCEEEEEeCCCCEEEEEEecCCCCC-ce-eEE
Q 047259           37 HGQLLKYDPELEE---TTVLHEGFYFANGVALSK-------------DENFVVVCESWKFRCRRYWLKGPRQG-RL-ESF   98 (225)
Q Consensus        37 ~g~v~~~d~~~~~---~~~~~~~~~~pnGi~~~~-------------dg~~Lyv~~~~~~~I~~~~~~~~~~~-~~-~~~   98 (225)
                      .|.|..+|..++.   ...+.........++++|             |++ ++++-...+.|..+++...... .. ..+
T Consensus       124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  202 (379)
T 3jrp_A          124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTL  202 (379)
T ss_dssp             TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEE
Confidence            5677777765442   222233445568899999             677 5555556788999988742111 11 111


Q ss_pred             eccCCCCCCceEECCC---CCEEEEeec
Q 047259           99 IEHLPGGPDNINLAPD---GSFWVALIK  123 (225)
Q Consensus        99 ~~~~~g~Pd~i~~d~~---G~l~v~~~~  123 (225)
                      . ...+....+++.++   |+++++...
T Consensus       203 ~-~h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          203 E-GHSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             C-CCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             e-cccCcEeEEEECCCCCCCCeEEEEeC
Confidence            1 12234568899998   776666554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.85  E-value=0.056  Score=45.78  Aligned_cols=102  Identities=14%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-CeEEEEe--------cCccccceeEEecCC-CEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EETTVLH--------EGFYFANGVALSKDE-NFV   72 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~--------~~~~~pnGi~~~~dg-~~L   72 (225)
                      +.+++.++|+++++- .                 .|.|..+|..+ ++.....        ......+.++|+|++ + +
T Consensus       181 ~~~~~~~~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~  241 (447)
T 3dw8_B          181 NSISINSDYETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-T  241 (447)
T ss_dssp             CEEEECTTSSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-E
T ss_pred             EEEEEcCCCCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-E
Confidence            456777777766663 2                 67888888762 2222111        223446899999998 6 6


Q ss_pred             EEEeCCCCEEEEEEecCCCC--CceeEEeccCC-----------CCCCceEECCCCCEEEEeec
Q 047259           73 VVCESWKFRCRRYWLKGPRQ--GRLESFIEHLP-----------GGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        73 yv~~~~~~~I~~~~~~~~~~--~~~~~~~~~~~-----------g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +++-+..+.|..+++.....  .....+.....           +....+++.++|+++++...
T Consensus       242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            66666778999999875321  11233332111           13467899999998776544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.82  E-value=0.15  Score=46.31  Aligned_cols=62  Identities=16%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC-----------------------------------
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ-----------------------------------  203 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~-----------------------------------  203 (225)
                      .+.+..+|.+ |+++-.+..+.+. ...+... ..+|++||+...                                   
T Consensus       493 dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y-~~~G~qyv~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (599)
T 1w6s_A          493 DGYLKARDSDTGDLLWKFKIPSGA-IGYPMTY-THKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQ  570 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHTTTGGGTCC
T ss_pred             CCeEEEEECCCCCEEEEeeCCCCc-EeccEEE-EeCCEEEEEEEccCCcccccccccccccccccccccccccccccccC
Confidence            4678889875 9999888887654 3333222 368899987532                                   


Q ss_pred             -CCeEEEEeCCCcccccCCCC
Q 047259          204 -SKFVGKLPLNTPEAELAPKA  223 (225)
Q Consensus       204 -~~~i~~~~~~~~~~~~~~~~  223 (225)
                       .++|.+|.|+.+.+-.-|++
T Consensus       571 ~g~~~~~f~l~~~~~~~~~~~  591 (599)
T 1w6s_A          571 MGGGVVVFSLDGKGPYDDPNV  591 (599)
T ss_dssp             CCCEEEEEEETTCCTTSSTTT
T ss_pred             CCCEEEEEEcCCCCCccCccc
Confidence             36899999987666554443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.81  E-value=0.054  Score=52.62  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             CcEEEEEeCCCCeEEEEecC--------------ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC
Q 047259           37 HGQLLKYDPELEETTVLHEG--------------FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL  102 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--------------~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~  102 (225)
                      .|.|..||..+++.......              ......++++|||+.+.++.  .+.|..+++...  .....+....
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~--~~~~~~~~~~  839 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTS--GLLAEIHTGH  839 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTC--CEEEEEECSS
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCC--CceeEEcCCC
Confidence            56777777655543322211              12456899999999777765  478999988642  1222222123


Q ss_pred             CCCCCceEECCCCCEEEEeec
Q 047259          103 PGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus       103 ~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .+....+++.++|++.++...
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~  860 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALS  860 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECS
T ss_pred             CCceEEEEEcCCCCEEEEEeC
Confidence            345678999999998877655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.81  E-value=0.1  Score=48.09  Aligned_cols=146  Identities=12%  Similarity=0.066  Sum_probs=84.1

Q ss_pred             CCcEEEEEeCCC---C---eEEEEec------CccccceeEEecCCCEEE-EEeCCC--CEEEEEEecCCC----CCcee
Q 047259           36 PHGQLLKYDPEL---E---ETTVLHE------GFYFANGVALSKDENFVV-VCESWK--FRCRRYWLKGPR----QGRLE   96 (225)
Q Consensus        36 ~~g~v~~~d~~~---~---~~~~~~~------~~~~pnGi~~~~dg~~Ly-v~~~~~--~~I~~~~~~~~~----~~~~~   96 (225)
                      +...|+.+|.++   +   +...+..      ...+...++|+|||+.++ +..+..  ..|+.++++++.    .....
T Consensus       226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~  305 (740)
T 4a5s_A          226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR  305 (740)
T ss_dssp             CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG
T ss_pred             CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE
Confidence            345789999887   6   5555432      344567889999998443 333332  368888887532    01111


Q ss_pred             EEe-ccCCC-----CCCceEECCCCCEEE-EeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC
Q 047259           97 SFI-EHLPG-----GPDNINLAPDGSFWV-ALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH  169 (225)
Q Consensus        97 ~~~-~~~~g-----~Pd~i~~d~~G~l~v-~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~  169 (225)
                      .+. +...+     .+...++.+||+.++ .... +.                                ....|..+|.+
T Consensus       306 ~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~-~~--------------------------------G~~~l~~~~~~  352 (740)
T 4a5s_A          306 QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN-EE--------------------------------GYRHICYFQID  352 (740)
T ss_dssp             CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC-TT--------------------------------SCEEEEEEETT
T ss_pred             EeeeccCCceEccCcCCCceEcCCCCEEEEEEEc-CC--------------------------------CceEEEEEECC
Confidence            221 11111     145788999998433 2222 10                                14578888888


Q ss_pred             CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC------CCeEEEEeCCCccc
Q 047259          170 GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ------SKFVGKLPLNTPEA  217 (225)
Q Consensus       170 G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~------~~~i~~~~~~~~~~  217 (225)
                      |.....+...... +  ......+++.||+.+..      ...|+++++++...
T Consensus       353 ~~~~~~lT~g~~~-v--~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~  403 (740)
T 4a5s_A          353 KKDCTFITKGTWE-V--IGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTK  403 (740)
T ss_dssp             CSSCEESCCSSSC-E--EEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred             CCceEecccCCEE-E--EEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCc
Confidence            7655555532222 1  11122458889988765      34788888876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.79  E-value=0.023  Score=47.90  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             CcEEEEEeCCCCeEEEEecC--------ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEe---ccCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEG--------FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFI---EHLPGG  105 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--------~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~---~~~~g~  105 (225)
                      .|.|..+|..+++.......        ......++|+|+|+.| ++-..++.|..++....  .....+.   ....+.
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~vwd~~~~--~~~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL-FAGYSNGDCYVWDTLLA--EMVLNLGTLQNSHEGR  346 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE-EEECTTSCEEEEETTTC--CEEEEECCSCSSCCCC
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE-EEEECCCCEEEEECCCC--ceEEEEecccCCCCCc
Confidence            67888888876665443322        1235789999999855 55566789999987532  1111121   112234


Q ss_pred             CCceEECCCCCEEEEeec
Q 047259          106 PDNINLAPDGSFWVALIK  123 (225)
Q Consensus       106 Pd~i~~d~~G~l~v~~~~  123 (225)
                      ...+++.++|.++++...
T Consensus       347 v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          347 ISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             CCEEEECSSSSEEEEECT
T ss_pred             eEEEEECCCCCEEEEeeC
Confidence            578899999998777654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.65  E-value=0.021  Score=52.36  Aligned_cols=106  Identities=12%  Similarity=0.104  Sum_probs=63.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---CCCEEEEEEecCCCCCceeEEeccCC-CCCCceEEC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---WKFRCRRYWLKGPRQGRLESFIEHLP-GGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---~~~~I~~~~~~~~~~~~~~~~~~~~~-g~Pd~i~~d  112 (225)
                      ...||.++..+++++.+...........+ +||+ +|+...   ..++|+++++++......+.+....+ ....+++++
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            45888888766677666654444445555 6777 776654   35799999986532222344443221 123456666


Q ss_pred             CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECC
Q 047259          113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDP  179 (225)
Q Consensus       113 ~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p  179 (225)
                       ++.++++....                                  ....|+.++.+|+....+..|
T Consensus       329 -~~~lv~~~~~d----------------------------------g~~~l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          329 -GGHLSLEYLKD----------------------------------ATSEVRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             -TTEEEEEEEET----------------------------------TEEEEEEEETTCCEEEECCCS
T ss_pred             -CCEEEEEEEEC----------------------------------CEEEEEEEeCCCCeeEEecCC
Confidence             56777665541                                  156778888777766666554

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.63  E-value=0.0061  Score=55.44  Aligned_cols=70  Identities=19%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEe
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      |..|+++++|+||++.++......     .........++.+++.+|++..++.+  .+-..|++|+||+++|||+-
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~-----~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAG-----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSG-----GGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccc-----cccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            677999999999999876321111     11223466789999988998887644  35567999999999999873

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.62  E-value=0.0091  Score=51.33  Aligned_cols=87  Identities=16%  Similarity=0.102  Sum_probs=53.1

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec--cCCCCCCceEEC
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE--HLPGGPDNINLA  112 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~~g~Pd~i~~d  112 (225)
                      ...|.|..+|.+++.+..+.......+.|+|+|+++.++++-+..+.|..+++.....  ...+..  ........++++
T Consensus       228 ~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s  305 (435)
T 4e54_B          228 DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG--KASFLYSLPHRHPVNAACFS  305 (435)
T ss_dssp             CSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS--SSCCSBCCBCSSCEEECCBC
T ss_pred             eCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc--cceEEEeeeccccccceeEC
Confidence            3467788888764433333233345688999999987887877788888888864211  111111  111223567888


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      ++|++.++...
T Consensus       306 pdg~~l~s~~~  316 (435)
T 4e54_B          306 PDGARLLTTDQ  316 (435)
T ss_dssp             TTSSEEEEEES
T ss_pred             CCCCeeEEEcC
Confidence            88887666544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.14  Score=41.99  Aligned_cols=64  Identities=11%  Similarity=0.016  Sum_probs=40.2

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecC-CCCCc-eeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKG-PRQGR-LESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~-~~~~~-~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .....++|+||++ ++++-+..+.|..++++. ..... ...+. ........+++.++|+++++...
T Consensus       108 ~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  173 (330)
T 2hes_X          108 NEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSSY  173 (330)
T ss_dssp             -CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCCCCEEEEEcC
Confidence            4567899999998 455666678898898842 11111 12222 12233467888999987777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.57  E-value=0.08  Score=48.85  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccc------cceeEEecCCCEEEEEeC
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYF------ANGVALSKDENFVVVCES   77 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~------pnGi~~~~dg~~Lyv~~~   77 (225)
                      .+...+||.+++++                   .|.|+.+|..+++.+.+..+...      .+.+++||||+.|+++..
T Consensus        21 ~~~w~~dg~~~~~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ-------------------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             CEEECSSSEEEEEE-------------------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             ccEECCCCcEEEEc-------------------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence            46777788766663                   25889999888887776554322      245889999998766543


Q ss_pred             C--------CCEEEEEEecCC
Q 047259           78 W--------KFRCRRYWLKGP   90 (225)
Q Consensus        78 ~--------~~~I~~~~~~~~   90 (225)
                      .        .+.++.++++++
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~  102 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKR  102 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTT
T ss_pred             CeeeEEEccceEEEEEECCCC
Confidence            1        256778888753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.56  E-value=0.065  Score=43.49  Aligned_cols=80  Identities=10%  Similarity=0.062  Sum_probs=50.2

Q ss_pred             CcEEEEEeC-CCCeEEEEec--CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCC------Cc-eeEEeccCCCCC
Q 047259           37 HGQLLKYDP-ELEETTVLHE--GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQ------GR-LESFIEHLPGGP  106 (225)
Q Consensus        37 ~g~v~~~d~-~~~~~~~~~~--~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~------~~-~~~~~~~~~g~P  106 (225)
                      .|.|..||. .+++...+..  .......++++| ++ ++++-...+.|..+++.....      +. ...+  ..++.+
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v  153 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKI  153 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCE
T ss_pred             CCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCce
Confidence            678888888 7777766555  555678999999 77 455556678999998753000      01 1111  123445


Q ss_pred             CceEECCCCCEEEEe
Q 047259          107 DNINLAPDGSFWVAL  121 (225)
Q Consensus       107 d~i~~d~~G~l~v~~  121 (225)
                      ..+++.+++ ++++.
T Consensus       154 ~~~~~~~~~-l~~~~  167 (342)
T 1yfq_A          154 FTMDTNSSR-LIVGM  167 (342)
T ss_dssp             EEEEECSSE-EEEEE
T ss_pred             EEEEecCCc-EEEEe
Confidence            678888776 54443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.54  E-value=0.13  Score=46.42  Aligned_cols=42  Identities=21%  Similarity=0.405  Sum_probs=28.2

Q ss_pred             ceEEEEECC-CCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC
Q 047259          160 GARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ  203 (225)
Q Consensus       160 ~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~  203 (225)
                      .+.|..+|. +|+++..+..+.+. ...+. +...+|++||+...
T Consensus       484 dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~-~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          484 DGYLKALDNKDGKELWNFKMPSGG-IGSPM-TYSFKGKQYIGSMY  526 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCE-EEEETTEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCCc-EeeeE-EEEECCEEEEEEEC
Confidence            467888996 49999888876542 22222 22368999998653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.076  Score=49.26  Aligned_cols=75  Identities=13%  Similarity=0.011  Sum_probs=44.4

Q ss_pred             CcEEEEEeCCCCeEEE---EecCccccceeEEecC--CCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           37 HGQLLKYDPELEETTV---LHEGFYFANGVALSKD--ENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~---~~~~~~~pnGi~~~~d--g~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      .|.|..+|..+++...   ..........++++|+  ++ ++++-+..+.|..+++..........+. ..+.....+++
T Consensus        76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~  153 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASW  153 (753)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEE
T ss_pred             CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEe
Confidence            5677777766565322   2234456789999999  87 4455566789999998753112222222 22333456666


Q ss_pred             CC
Q 047259          112 AP  113 (225)
Q Consensus       112 d~  113 (225)
                      .+
T Consensus       154 ~p  155 (753)
T 3jro_A          154 AP  155 (753)
T ss_dssp             CC
T ss_pred             cC
Confidence            66

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.52  E-value=0.21  Score=45.49  Aligned_cols=83  Identities=16%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             CcEEEEEeCCCC-----eE-EEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceE
Q 047259           37 HGQLLKYDPELE-----ET-TVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNIN  110 (225)
Q Consensus        37 ~g~v~~~d~~~~-----~~-~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~  110 (225)
                      .|.|..++..++     .. ..+.........++++||++ +.++-+..+.|..+++...  .....+.. ..+....++
T Consensus       404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~--~~~~~~~~-h~~~v~~~~  479 (694)
T 3dm0_A          404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAG--VSTRRFVG-HTKDVLSVA  479 (694)
T ss_dssp             TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT--EEEEEEEC-CSSCEEEEE
T ss_pred             CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCC--cceeEEeC-CCCCEEEEE
Confidence            566666664321     22 22333445568899999998 5566667789999998642  12223332 223346788


Q ss_pred             ECCCCCEEEEeec
Q 047259          111 LAPDGSFWVALIK  123 (225)
Q Consensus       111 ~d~~G~l~v~~~~  123 (225)
                      +.++|+..++...
T Consensus       480 ~s~~~~~l~s~s~  492 (694)
T 3dm0_A          480 FSLDNRQIVSASR  492 (694)
T ss_dssp             ECTTSSCEEEEET
T ss_pred             EeCCCCEEEEEeC
Confidence            9999887766654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.47  E-value=0.11  Score=43.35  Aligned_cols=87  Identities=13%  Similarity=0.030  Sum_probs=55.7

Q ss_pred             CCCCcEEEEEeCCCCe-----------------EEEEecCccccceeEEecCCCEEEEEeCCCCE-EEEEEecCCCCCce
Q 047259           34 GKPHGQLLKYDPELEE-----------------TTVLHEGFYFANGVALSKDENFVVVCESWKFR-CRRYWLKGPRQGRL   95 (225)
Q Consensus        34 ~~~~g~v~~~d~~~~~-----------------~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~-I~~~~~~~~~~~~~   95 (225)
                      +...|.|..+|..+++                 +..+.......+.++|+|||+ ++++-+..+. |..+++...  ...
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~--~~~  231 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDG--VLV  231 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTC--CEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCC--cEE
Confidence            4557788888876544                 333334445668999999998 5566666776 888888642  122


Q ss_pred             eEEecc-CCCCCCceEECCCCCEEEEeec
Q 047259           96 ESFIEH-LPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        96 ~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ..+... ..+....++++++|++.++...
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEET
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEEC
Confidence            333311 2334567899999998777655

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.42  E-value=0.2  Score=42.79  Aligned_cols=124  Identities=14%  Similarity=0.011  Sum_probs=75.1

Q ss_pred             CCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..+|..+++......+ ......++++  ++ .+++-+.++.|..+++...   . ..+..........+++.++
T Consensus       330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg~v~vwd~~~~---~-~~~~~~~~~~~~~~~~~~~  402 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK-FLVSAAADGSIRGWDANDY---S-RKFSYHHTNLSAITTFYVS  402 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SS-EEEEEETTSEEEEEETTTC---C-EEEEEECTTCCCEEEEEEC
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CC-EEEEEeCCCcEEEEECCCC---c-eeeeecCCCCccEEEEEeC
Confidence            367888889877765554433 3445678887  34 5566667789999998642   1 2222122334556788888


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |++.++...                                     +.|...|. .|+.+..+..+..   ..+..+...
T Consensus       403 ~~~l~~~~d-------------------------------------g~i~iwd~~~g~~~~~~~~~~~---~~v~~v~~~  442 (464)
T 3v7d_B          403 DNILVSGSE-------------------------------------NQFNIYNLRSGKLVHANILKDA---DQIWSVNFK  442 (464)
T ss_dssp             SSEEEEEET-------------------------------------TEEEEEETTTCCEEESCTTTTC---SEEEEEEEE
T ss_pred             CCEEEEecC-------------------------------------CeEEEEECCCCcEEehhhccCC---CcEEEEEec
Confidence            887776543                                     34555564 4777654333222   245666667


Q ss_pred             CCEEEEeeCCCCe
Q 047259          194 EDNLYMASIQSKF  206 (225)
Q Consensus       194 ~~~Lyv~~~~~~~  206 (225)
                      ++.|+++...++.
T Consensus       443 ~~~l~~~~~~~g~  455 (464)
T 3v7d_B          443 GKTLVAAVEKDGQ  455 (464)
T ss_dssp             TTEEEEEEEETTE
T ss_pred             CCEEEEEEEeCCe
Confidence            8888777655443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.40  E-value=0.31  Score=40.01  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ...-+.++++|+++ +.++-+..+.|..+++...  .....+.. ..+....+++.++|+..++...
T Consensus        76 ~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~--~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           76 NHFVSDLALSQENC-FAISSSWDKTLRLWDLRTG--TTYKRFVG-HQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             SSCEEEEEECSSTT-EEEEEETTSEEEEEETTSS--CEEEEEEC-CCSCEEEEEECSSTTEEEEEET
T ss_pred             CCceEEEEECCCCC-EEEEEcCCCcEEEEECCCC--cEEEEEcC-CCCcEEEEEECCCCCEEEEEcC
Confidence            34568899999998 5567777889999998642  12223332 2233467899999987766554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.36  E-value=0.071  Score=44.47  Aligned_cols=69  Identities=13%  Similarity=-0.008  Sum_probs=49.3

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcE-EEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEEeCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQ-LLKYDPELEETTVLHE---GFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~~~~~~~---~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      +.+++.++|++.+|-+.                 .|. |..+|..+++......   .....+.++|+||++. +++-+.
T Consensus       199 ~~~~~s~~g~~l~s~s~-----------------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~  260 (355)
T 3vu4_A          199 KMVRLNRKSDMVATCSQ-----------------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSD  260 (355)
T ss_dssp             EEEEECTTSSEEEEEET-----------------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE-EEEEET
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEEC
Confidence            45777888877777554                 566 8888887676544443   3455689999999984 455566


Q ss_pred             CCEEEEEEecC
Q 047259           79 KFRCRRYWLKG   89 (225)
Q Consensus        79 ~~~I~~~~~~~   89 (225)
                      .+.|..+++..
T Consensus       261 d~~v~iw~~~~  271 (355)
T 3vu4_A          261 KWTLHVFEIFN  271 (355)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCEEEEEEccC
Confidence            78999998864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.12  Score=42.43  Aligned_cols=83  Identities=11%  Similarity=-0.013  Sum_probs=44.5

Q ss_pred             CcEEEEEeCC-CC---eE-EEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEE
Q 047259           37 HGQLLKYDPE-LE---ET-TVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINL  111 (225)
Q Consensus        37 ~g~v~~~d~~-~~---~~-~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~  111 (225)
                      .+.|..+|.. .+   +. ..+.......+.++|+|+++ ++++-+..+.|..++...........+. ...+....+++
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~  205 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDF  205 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEE
T ss_pred             CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEe
Confidence            5667777762 12   22 22223345578999999998 5566667788888876532111112222 12222345677


Q ss_pred             CCC--CCEEEEe
Q 047259          112 APD--GSFWVAL  121 (225)
Q Consensus       112 d~~--G~l~v~~  121 (225)
                      .++  +.+.++.
T Consensus       206 ~~~~~~~~l~s~  217 (330)
T 2hes_X          206 DKTEGVFRLCSG  217 (330)
T ss_dssp             CCSSSSCEEEEE
T ss_pred             cCCCCeeEEEEE
Confidence            776  4444443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.31  E-value=0.32  Score=39.13  Aligned_cols=83  Identities=12%  Similarity=0.018  Sum_probs=51.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..+.|..+|..+++......+ ....+.|+++||++ ++++-..++.|..+++...  .....+.  .......+++.++
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~--~~~~~~~--~~~~v~~~~~~~~  267 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEG--KHLYTLD--GGDIINALCFSPN  267 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT--EEEEEEE--CSSCEEEEEECSS
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccC--ceeeeec--CCceEEeeecCCC
Confidence            355677788776665554433 34458899999998 4455566789999988642  1111221  2223456777887


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      +.+..+...
T Consensus       268 ~~~~~~~~d  276 (340)
T 4aow_A          268 RYWLCAATG  276 (340)
T ss_dssp             SSEEEEEET
T ss_pred             CceeeccCC
Confidence            776665533

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.12  Score=46.85  Aligned_cols=116  Identities=11%  Similarity=0.029  Sum_probs=70.9

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhh
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAI  132 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~  132 (225)
                      ..+...++|+|||++| .+-+.++.|..++.++    ....+. +..    ..-..+++.+||++.++...         
T Consensus        85 ~~~V~~vawSPdG~~L-As~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~---------  149 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWM-AVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE---------  149 (588)
T ss_dssp             SCCEEEEEECSSSSCE-EEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET---------
T ss_pred             CCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC---------
Confidence            4567899999999955 5555667788887432    111111 111    12357999999997777665         


Q ss_pred             hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCc--------EEEEEECC-CCCcccceeEEEEeCCEEEEeeCC
Q 047259          133 QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGK--------IIMDFNDP-NATYISFVTSAVEFEDNLYMASIQ  203 (225)
Q Consensus       133 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~--------~~~~~~~p-~g~~~~~~t~~~~~~~~Lyv~~~~  203 (225)
                                                 .+.|...|.+++        .+..+... .|. ...+..++...+. +++...
T Consensus       150 ---------------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg-Laass~  200 (588)
T 2j04_A          150 ---------------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV-LVAALS  200 (588)
T ss_dssp             ---------------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE-EEEEET
T ss_pred             ---------------------------CCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc-EEEEeC
Confidence                                       456666665533        24555421 222 3456666665444 566677


Q ss_pred             CCeEEEEeCCCcc
Q 047259          204 SKFVGKLPLNTPE  216 (225)
Q Consensus       204 ~~~i~~~~~~~~~  216 (225)
                      .+.|...++++..
T Consensus       201 D~tVrlWd~~~~~  213 (588)
T 2j04_A          201 NNSVFSMTVSASS  213 (588)
T ss_dssp             TCCEEEECCCSSS
T ss_pred             CCeEEEEECCCCc
Confidence            8888888887655

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.27  E-value=0.32  Score=43.92  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=28.4

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASI  202 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~  202 (225)
                      .+.+..+|.+ |+++-.+..+.+- ...+... ..+|++||+..
T Consensus       506 dg~l~A~D~~tG~~lW~~~~~~g~-~a~P~~y-~~~G~qYv~~~  547 (582)
T 1flg_A          506 DGYFKAFDAKSGKELWKFQTGSGI-VSPPITW-EQDGEQYLGVT  547 (582)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEE
T ss_pred             CCcEEEEECCCCCEEEEecCCCCc-ccCceEE-EECCEEEEEEE
Confidence            4678889974 9999999887653 3223222 36899999854

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.38  Score=45.67  Aligned_cols=98  Identities=13%  Similarity=0.057  Sum_probs=64.6

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRC   82 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I   82 (225)
                      +.++++++|++.++-..                 .|.|..|+..+.+.......-..-..++|+| |+ +.++-+..+.|
T Consensus        21 ~~lafspdg~~lAsgs~-----------------Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v   81 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATV-----------------TGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTV   81 (902)
T ss_dssp             EEEEEETTTTEEEEEET-----------------TSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEE
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeE
Confidence            45788888887776443                 6788888876555444434334568999999 77 55566677899


Q ss_pred             EEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           83 RRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ..++++..  .....+.  .++....++++++|++.++...
T Consensus        82 ~lWd~~~~--~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           82 YVLSLYSQ--KVLTTVF--VPGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             EEEETTTC--SEEEEEE--CSSCEEEEECCTTCSEEEEEET
T ss_pred             EEEECCCC--cEEEEEc--CCCCEEEEEECCCCCEEEEEcC
Confidence            99998642  1122222  2334467888999987666544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.18  E-value=0.21  Score=40.54  Aligned_cols=52  Identities=8%  Similarity=0.068  Sum_probs=39.7

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEE--ecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVAL--SKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~--~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .|.|..||..+++...+.........++|  +++++ ++++-..++.|..+++..
T Consensus       107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSC
T ss_pred             CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCC
Confidence            67888889877776666555666789999  88887 555556678999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.13  Score=43.55  Aligned_cols=68  Identities=7%  Similarity=0.004  Sum_probs=42.1

Q ss_pred             CcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC---Ce---EEEEecCccccceeEEecCCCEEEEE
Q 047259            3 NDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL---EE---TTVLHEGFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         3 ndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~---~~---~~~~~~~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      +.+++.+ +|++++|-+.                 .|.|..||..+   +.   .............++++|+++.| ++
T Consensus        67 ~~~~~s~~~~~~l~s~s~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s  128 (437)
T 3gre_A           67 TSSAVSPGETPYLITGSD-----------------QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF-AV  128 (437)
T ss_dssp             EEEEEECSSSCEEEEEET-----------------TSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEE-EE
T ss_pred             EEEEECCCCCCEEEEecC-----------------CceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEE-EE
Confidence            3566777 7766666443                 56676666543   21   11222334557899999999855 55


Q ss_pred             eCCCCEEEEEEec
Q 047259           76 ESWKFRCRRYWLK   88 (225)
Q Consensus        76 ~~~~~~I~~~~~~   88 (225)
                      -+..+.|..++++
T Consensus       129 ~s~dg~i~vwd~~  141 (437)
T 3gre_A          129 SSKDGQIIVLKVN  141 (437)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCEEEEEEec
Confidence            5566788888774

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.067  Score=49.62  Aligned_cols=102  Identities=13%  Similarity=0.062  Sum_probs=59.9

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCe--EEEEec-CccccceeEEecC--CCEEEEEeC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEE--TTVLHE-GFYFANGVALSKD--ENFVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~-~~~~pnGi~~~~d--g~~Lyv~~~   77 (225)
                      +.+++.++|+..+|-..                 .|.|..||..++.  ...... .......++|+++  ++ ++++-+
T Consensus        13 ~~l~~s~dg~~latg~~-----------------dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s   74 (753)
T 3jro_A           13 HDAVLDYYGKRLATCSS-----------------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCS   74 (753)
T ss_dssp             EEECCCSSSCCEEEEET-----------------TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEE
T ss_pred             EEEEECCCCCeEEEEEC-----------------CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEEEEe
Confidence            35667777775555433                 5666666654233  222233 3345578999988  77 455556


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC--CCEEEEeec
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD--GSFWVALIK  123 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~--G~l~v~~~~  123 (225)
                      .++.|..+++.+........+. ........+++.++  |+++++...
T Consensus        75 ~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           75 YDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeC
Confidence            6789999998753111122221 12234567888888  887776655

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.12  E-value=0.055  Score=49.39  Aligned_cols=140  Identities=9%  Similarity=0.041  Sum_probs=74.7

Q ss_pred             CCcEEEEEeCCCCeEE---EEe------cCccccceeEEecCCCEEEEEe-CC--CCEEEEEE----ecCCCCCceeEEe
Q 047259           36 PHGQLLKYDPELEETT---VLH------EGFYFANGVALSKDENFVVVCE-SW--KFRCRRYW----LKGPRQGRLESFI   99 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~---~~~------~~~~~pnGi~~~~dg~~Lyv~~-~~--~~~I~~~~----~~~~~~~~~~~~~   99 (225)
                      ....|+.+|.++++..   .+.      ........++|+||++.+|... ..  ..+|+.++    ++++   ....+.
T Consensus       222 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g---~~~~~~  298 (719)
T 1z68_A          222 PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW---DCPKTQ  298 (719)
T ss_dssp             CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE---ECCGGG
T ss_pred             CeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC---ceEEEE
Confidence            3447888998765531   221      1233457899999976444422 22  24688888    5432   221111


Q ss_pred             ----ccCCCCCC-----ceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC
Q 047259          100 ----EHLPGGPD-----NINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH  169 (225)
Q Consensus       100 ----~~~~g~Pd-----~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~  169 (225)
                          ....+.-+     .+++.+||+ |++......                                 ....|..++.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---------------------------------g~~~l~~~~~~  345 (719)
T 1z68_A          299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD---------------------------------GYKHIHYIKDT  345 (719)
T ss_dssp             EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT---------------------------------SCEEEEEESSC
T ss_pred             ecccccCCceEccccCCccEECCCCCeEEEEEEccC---------------------------------CceEEEEEECC
Confidence                11222222     788999997 444322210                                 14578888887


Q ss_pred             CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC------CCeEEEEeCCC
Q 047259          170 GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ------SKFVGKLPLNT  214 (225)
Q Consensus       170 G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~------~~~i~~~~~~~  214 (225)
                      +.....+...... +..+.. . ++++||++...      ..+++++++++
T Consensus       346 ~~~~~~lt~~~~~-v~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~  393 (719)
T 1z68_A          346 VENAIQITSGKWE-AINIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGS  393 (719)
T ss_dssp             STTCEECSCSSSC-EEEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred             CCceEecccCceE-EEEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence            5434444432222 211211 2 67788888754      35677777743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.07  E-value=0.15  Score=40.78  Aligned_cols=102  Identities=13%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCC--e--EE-EEecCccccceeEEec--CCCEEEEE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELE--E--TT-VLHEGFYFANGVALSK--DENFVVVC   75 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~--~~-~~~~~~~~pnGi~~~~--dg~~Lyv~   75 (225)
                      +.+++.++|++.++-..                 .|.|..||..++  .  .. .+.........++|+|  |++ ++++
T Consensus        15 ~~~~~~~~~~~l~~~~~-----------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s   76 (351)
T 3f3f_A           15 HDVVYDFYGRHVATCSS-----------------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIAS   76 (351)
T ss_dssp             EEEEECSSSSEEEEEET-----------------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEE
T ss_pred             eEEEEcCCCCEEEEeeC-----------------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEE
Confidence            46788888887776543                 566666665433  2  22 2223445678999999  577 4555


Q ss_pred             eCCCCEEEEEEecCCCC-------CceeEEeccCCCCCCceEECCC--CCEEEEeec
Q 047259           76 ESWKFRCRRYWLKGPRQ-------GRLESFIEHLPGGPDNINLAPD--GSFWVALIK  123 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~-------~~~~~~~~~~~g~Pd~i~~d~~--G~l~v~~~~  123 (225)
                      -..++.|..++++....       .....+. ...+....+++.++  |++.++...
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecC
Confidence            55678898898864211       0111111 12334567888888  776665544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.02  E-value=0.36  Score=44.44  Aligned_cols=55  Identities=9%  Similarity=0.163  Sum_probs=38.3

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC---------------------CCeEEEEeCCCcc
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ---------------------SKFVGKLPLNTPE  216 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~---------------------~~~i~~~~~~~~~  216 (225)
                      .+.+..+|.+ |+++..+..+.+. ...+... ..+|+.||+...                     ...+.+|.+++..
T Consensus       495 dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~ty-~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~  571 (689)
T 1yiq_A          495 DGRVIAYAADTGEKLWEQPAASGV-MAAPVTY-SVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA  571 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred             CCcEEEEECCCCccceeeeCCCCc-ccCceEE-EECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence            5688899975 9999999887653 3233222 468999988542                     3488888887644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.98  E-value=0.63  Score=39.55  Aligned_cols=82  Identities=10%  Similarity=0.025  Sum_probs=50.3

Q ss_pred             CCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..+|..+++...... .......++++|+++.|+ +-+..+.|..+++...  .....+. ........++++  
T Consensus       288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~--~~~~~~~-~h~~~v~~~~~~--  361 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLENG--ELMYTLQ-GHTALVGLLRLS--  361 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE-EEETTSCEEEEETTTT--EEEEEEC-CCSSCEEEEEEC--
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC--cEEEEEe-CCCCcEEEEEEc--
Confidence            46788889987666554443 345568899999998554 5556788999998642  1122222 122334556666  


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      +...++...
T Consensus       362 ~~~l~s~s~  370 (464)
T 3v7d_B          362 DKFLVSAAA  370 (464)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEeC
Confidence            455555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.94  E-value=0.48  Score=43.46  Aligned_cols=53  Identities=11%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC---------------------CCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ---------------------SKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~---------------------~~~i~~~~~~~  214 (225)
                      .+.+..+|.+ |+++..+..+.+- ...+... ..+|++|++...                     .+.|.++.+.+
T Consensus       478 dg~l~a~d~~tG~~l~~~~~~~~~-~~~p~~~-~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g  552 (668)
T 1kv9_A          478 AGQMHAYSADKGEALWQFEAQSGI-VAAPMTF-ELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG  552 (668)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred             cccchhhhhhcChhheEecCCCCc-ccCceEE-EECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence            4688888875 9999888876542 3233222 468999988654                     35888888776

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=95.86  E-value=0.52  Score=37.55  Aligned_cols=141  Identities=11%  Similarity=0.004  Sum_probs=76.7

Q ss_pred             CcEEEEEeCCCCe----------EEEEecCccccceeEEecC--CCEEEEEeCCCCEEEEEEecCCC-CCceeEEe--cc
Q 047259           37 HGQLLKYDPELEE----------TTVLHEGFYFANGVALSKD--ENFVVVCESWKFRCRRYWLKGPR-QGRLESFI--EH  101 (225)
Q Consensus        37 ~g~v~~~d~~~~~----------~~~~~~~~~~pnGi~~~~d--g~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~--~~  101 (225)
                      .|.|..||..+++          +..+.........++++|+  ++.| ++-...+.|..+++.... ......-.  ..
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL-ACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE-EEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE-EEecCCCcEEEecCCChHHhccccccccccc
Confidence            5666666655431          2222333456789999999  8744 555567899999986431 11111100  00


Q ss_pred             -------CCCCCCceEECCC---CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCc
Q 047259          102 -------LPGGPDNINLAPD---GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGK  171 (225)
Q Consensus       102 -------~~g~Pd~i~~d~~---G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~  171 (225)
                             .......+++.++   +.++++....                                   ...++.....++
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------------------------------~~~~~~~~~~~~  203 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-----------------------------------QAIIYQRGKDGK  203 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-----------------------------------EEEEEEECTTSC
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCC-----------------------------------CcEEEEccCCCc
Confidence                   1122456777775   6666655441                                   233344444566


Q ss_pred             EEEEEECCCCCcccceeEEEEe-CC----EEEEeeCCCCeEEEEeCCCc
Q 047259          172 IIMDFNDPNATYISFVTSAVEF-ED----NLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       172 ~~~~~~~p~g~~~~~~t~~~~~-~~----~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      ........ +. -..++.+... ++    .++++....+.|..+++...
T Consensus       204 ~~~~~~~~-~h-~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          204 LHVAAKLP-GH-KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEEECC-CC-CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             eeeeeecC-CC-CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            53333332 11 1235555553 33    67777777788888887653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.82  E-value=0.72  Score=38.96  Aligned_cols=52  Identities=10%  Similarity=0.102  Sum_probs=38.8

Q ss_pred             CcEEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEG---FYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|+.||..+|++..+...   ...-..|+|+|||++| ++-+.++.|..+++..
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~l-asgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEE-EEEECCCeEEEEEcCC
Confidence            56899999988887665432   2345899999999955 4555678899998864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.78  E-value=0.58  Score=37.56  Aligned_cols=62  Identities=18%  Similarity=0.149  Sum_probs=35.2

Q ss_pred             ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEee
Q 047259           57 FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        57 ~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~  122 (225)
                      ......++|+||++.| ++-...+.|..++....   ...............+.+.+++++.++..
T Consensus        86 ~~~V~~~~~s~dg~~l-~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  147 (340)
T 4aow_A           86 SHFVSDVVISSDGQFA-LSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGS  147 (340)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCEEEEEECCCCCEE-EEEcccccceEEeeccc---ceeeeecCCCCceeEEEEeecCccceeec
Confidence            4456889999999855 45556678888876532   11111111222334556666666555443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.14  Score=46.41  Aligned_cols=76  Identities=11%  Similarity=-0.052  Sum_probs=44.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCcc-----ccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCc-----eeEEeccCC---
Q 047259           37 HGQLLKYDPELEETTVLHEGFY-----FANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGR-----LESFIEHLP---  103 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~-----~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~-----~~~~~~~~~---  103 (225)
                      +|.|..+|.+ +.+.. .+...     .-..++|+|||+.|+++. ..+.|..+++.++...+     ...+-.+..   
T Consensus       106 dg~V~iwd~~-~~l~~-l~~~~~~~~~sv~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~  182 (588)
T 2j04_A          106 NGNVSVFKDN-KMLTN-LDSKGNLSSRTYHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK  182 (588)
T ss_dssp             TSCEEEEETT-EEEEE-CCCSSCSTTTCEEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC
T ss_pred             CCcEEEEeCC-ceeee-ccCCCccccccEEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeeeccccccc
Confidence            5667777753 32222 22211     256799999999776665 46899999987643211     123311111   


Q ss_pred             CCCCceEECCCC
Q 047259          104 GGPDNINLAPDG  115 (225)
Q Consensus       104 g~Pd~i~~d~~G  115 (225)
                      ..-..+++.++|
T Consensus       183 ~~V~sVawSPdg  194 (588)
T 2j04_A          183 DWVTHIVWYEDV  194 (588)
T ss_dssp             CCEEEEEEETTE
T ss_pred             ccEEEEEEcCCc
Confidence            234678888998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.71  E-value=0.62  Score=37.37  Aligned_cols=102  Identities=13%  Similarity=0.090  Sum_probs=59.0

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC--CeE-EEEecCccccceeEEecC--CCEEEEEeC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL--EET-TVLHEGFYFANGVALSKD--ENFVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~-~~~~~~~~~pnGi~~~~d--g~~Lyv~~~   77 (225)
                      +++++.++|+..+|-+.                 .+.|..+|..+  .+. ..+...-..-+.++|+++  ++ ++++-+
T Consensus        13 ~~~~~s~~g~~las~s~-----------------D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s   74 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSS-----------------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCS   74 (297)
T ss_dssp             EEEEECTTSSEEEEEET-----------------TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEE
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-EEEEEc
Confidence            46788899988777554                 45555555432  222 233233344578999864  66 666777


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC--CCEEEEeec
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD--GSFWVALIK  123 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~--G~l~v~~~~  123 (225)
                      .++.|..+++..+.......+. ........+++.++  |.+.++...
T Consensus        75 ~D~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~  121 (297)
T 2pm7_B           75 YDGKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASS  121 (297)
T ss_dssp             TTTEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCCEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEEC
Confidence            7889999988643111222222 11223456778776  666665544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.65  Score=44.07  Aligned_cols=85  Identities=5%  Similarity=-0.103  Sum_probs=50.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeE-------E-eccCCCCCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLES-------F-IEHLPGGPD  107 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~-------~-~~~~~g~Pd  107 (225)
                      ..+.|..||..+++.............++++|+++.|+++. .++.|..+++++.......+       . .....+...
T Consensus        77 ~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs-~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~  155 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV  155 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE-TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc-CCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence            46778888876665443333334567899999999776665 56789999987532110100       0 001123456


Q ss_pred             ceEECCCC-CEEEEe
Q 047259          108 NINLAPDG-SFWVAL  121 (225)
Q Consensus       108 ~i~~d~~G-~l~v~~  121 (225)
                      .+++.+++ .+.++.
T Consensus       156 sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A          156 SIQWNPRDIGTVLIS  170 (902)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEccCCCCEEEEE
Confidence            78888864 444443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.16  E-value=1.3  Score=37.43  Aligned_cols=115  Identities=9%  Similarity=-0.066  Sum_probs=68.7

Q ss_pred             cccceeEEecCCCEEEEEe--CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcC
Q 047259           58 YFANGVALSKDENFVVVCE--SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSC  135 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~--~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~  135 (225)
                      .....++++|++..++++.  +..+.|..+++..+   ....... .......+.+.++++..++..+..          
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~----------  342 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVD-AHSQVCSILWSPHYKELISGHGFA----------  342 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEE-CSSCEEEEEEETTTTEEEEEECTT----------
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeec-cccceeeeeecCCCCeEEEEEecC----------
Confidence            3457889999877565543  35678888887642   2211111 233456778888888777665521          


Q ss_pred             hhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCC
Q 047259          136 PDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~  213 (225)
                                              .+.|...|. .++.+..+....+    .++.++.. ++.+.++......|..-++.
T Consensus       343 ------------------------d~~I~iwd~~~~~~v~~l~gH~~----~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          343 ------------------------QNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             ------------------------TCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ------------------------CCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence                                    345555554 4777777764333    35556553 56665666666667666654


Q ss_pred             C
Q 047259          214 T  214 (225)
Q Consensus       214 ~  214 (225)
                      .
T Consensus       395 ~  395 (420)
T 4gga_A          395 E  395 (420)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.08  E-value=1  Score=36.04  Aligned_cols=53  Identities=13%  Similarity=0.032  Sum_probs=34.1

Q ss_pred             CCcEEEEEeCCCCeEE---EEecCccccceeEEecC--CCEEEEEeCCCCEEEEEEecC
Q 047259           36 PHGQLLKYDPELEETT---VLHEGFYFANGVALSKD--ENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~---~~~~~~~~pnGi~~~~d--g~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ..|.|..+|..+++.+   .+.......+.++|+|+  ++ ++++-+..+.|..+++..
T Consensus        75 ~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCS
T ss_pred             CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecC
Confidence            3566777776554321   22223345688999997  66 555666778999998864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.04  E-value=1  Score=35.70  Aligned_cols=52  Identities=10%  Similarity=0.114  Sum_probs=38.3

Q ss_pred             CcEEEEEeCCCCeEEEEec---CccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHE---GFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~---~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..+|..+++......   ....-..++++|+++.| ++-+..+.|..++++.
T Consensus        44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l-~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE-EEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE-EEEECCCcEEEeecCC
Confidence            5678899988888765543   22345789999999844 5666778998888864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.80  E-value=0.034  Score=47.12  Aligned_cols=51  Identities=10%  Similarity=-0.107  Sum_probs=27.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .|.|+.+|..+|+..-.... .......+..+++ +|++.+..+.|+.++.++
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC----
T ss_pred             CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCC
Confidence            47899999887875433222 2222333445555 777777788999999853

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=94.78  E-value=0.28  Score=42.34  Aligned_cols=65  Identities=11%  Similarity=0.030  Sum_probs=41.2

Q ss_pred             ccceeEEecCCCEEEE---EeCCCCEEEEEEecCC---CCCc---eeEEe--ccCCCCCCceEECCC-CCEEEEeec
Q 047259           59 FANGVALSKDENFVVV---CESWKFRCRRYWLKGP---RQGR---LESFI--EHLPGGPDNINLAPD-GSFWVALIK  123 (225)
Q Consensus        59 ~pnGi~~~~dg~~Lyv---~~~~~~~I~~~~~~~~---~~~~---~~~~~--~~~~g~Pd~i~~d~~-G~l~v~~~~  123 (225)
                      ..+.++|+|||+.|+|   +.+..+.|..+++...   ....   ...+.  .........+++.++ ++++++...
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            4789999999998887   5667788989987531   0001   00111  011234568889887 677776655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.72  E-value=1  Score=41.71  Aligned_cols=52  Identities=10%  Similarity=-0.024  Sum_probs=34.0

Q ss_pred             cEEEEEeCCCCe--EEEEe--cCccccceeEEecCCCEEEEEeC--CCCEEEEEEecC
Q 047259           38 GQLLKYDPELEE--TTVLH--EGFYFANGVALSKDENFVVVCES--WKFRCRRYWLKG   89 (225)
Q Consensus        38 g~v~~~d~~~~~--~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~--~~~~I~~~~~~~   89 (225)
                      ..||+++..++.  -.++.  ....+-.++.+||||++|+++..  ....|+.+++++
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            468888876543  12332  22234467899999998877653  356888888865

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.53  E-value=0.43  Score=37.98  Aligned_cols=96  Identities=11%  Similarity=0.046  Sum_probs=53.3

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC-Ce------EEEEec-CccccceeEEecCCCEEEEE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL-EE------TTVLHE-GFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~------~~~~~~-~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      .+.++++|.||..  +                 .|.||++++.+ +.      -+++.+ +...-.-|.++|+|. ||..
T Consensus        92 a~~fD~~G~LYav--~-----------------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav  151 (236)
T 1tl2_A           92 FLFFDPNGYLYAV--S-----------------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAV  151 (236)
T ss_dssp             EEEECTTSCEEEE--E-----------------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEE
T ss_pred             EEEECCCCCEEEe--C-----------------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEE
Confidence            4566777777776  2                 47888888632 11      122222 333447899999997 9988


Q ss_pred             eCCCCEEEEEEec-CC--C-CCceeEEeccCCCCCCceEECCCCCEEEEe
Q 047259           76 ESWKFRCRRYWLK-GP--R-QGRLESFIEHLPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus        76 ~~~~~~I~~~~~~-~~--~-~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~  121 (225)
                      .  .++++|-..- +.  . +.....+....-..=.-+.++++|.||.+.
T Consensus       152 ~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          152 H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            8  5667764332 11  0 111122221100011236688889988887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.44  E-value=0.35  Score=39.36  Aligned_cols=101  Identities=14%  Similarity=0.024  Sum_probs=58.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEE---EEecCccccceeEEec--CCCEEEEEeC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETT---VLHEGFYFANGVALSK--DENFVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~pnGi~~~~--dg~~Lyv~~~   77 (225)
                      +++++.++|+..+|-+.                 .+.|..+|..+++..   .+......-..++|++  +++ ++++-+
T Consensus        17 ~~v~~s~~g~~lasgs~-----------------D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s   78 (316)
T 3bg1_A           17 HDAQMDYYGTRLATCSS-----------------DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCS   78 (316)
T ss_dssp             EEEEECGGGCEEEEEET-----------------TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEE
T ss_pred             EEeeEcCCCCEEEEEeC-----------------CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEE
Confidence            46788888887777554                 566666665444422   2223334567899986  366 556666


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC--CCEEEEee
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD--GSFWVALI  122 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~--G~l~v~~~  122 (225)
                      ..+.|..+++..........+. ...+....+++.++  |.+.++..
T Consensus        79 ~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs  124 (316)
T 3bg1_A           79 YDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGS  124 (316)
T ss_dssp             TTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEEC
T ss_pred             CCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEc
Confidence            7788888887642111122222 12234567777776  55554443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.41  E-value=2.7  Score=37.70  Aligned_cols=51  Identities=14%  Similarity=0.029  Sum_probs=33.5

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .+.|..+|+. |+++-.+..+... .  .+.++..++.+|+++ ..+.|..++..+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~-~--~~~~~t~gg~v~~g~-~dg~l~a~D~~t  494 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAA-W--GGTLYTKGGLVWYAT-LDGYLKALDNKD  494 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCC-C--SBCEEETTTEEEEEC-TTSEEEEEETTT
T ss_pred             CCeEEEEECCCCCEEEEecCCCCc-c--ceeEEECCCEEEEEc-CCCeEEEEECCC
Confidence            5899999975 8988777653211 1  122334578888865 457888887654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=93.98  E-value=2.5  Score=35.70  Aligned_cols=52  Identities=8%  Similarity=-0.066  Sum_probs=33.4

Q ss_pred             CCCcEEEEEeCCCCeEEEEec-CccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           35 KPHGQLLKYDPELEETTVLHE-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      ...|.|..+|..+++...... .......+++++  + .+++-+..+.|..+++..
T Consensus       190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~  242 (435)
T 1p22_A          190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMAS  242 (435)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSS
T ss_pred             cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCC
Confidence            346778888876666544433 233456777764  4 555666778999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.73  E-value=1.1  Score=39.75  Aligned_cols=88  Identities=15%  Similarity=0.018  Sum_probs=54.0

Q ss_pred             CCCCcEEEEEeCCCCeE--EEEecCcccccee--EEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC-CCCc
Q 047259           34 GKPHGQLLKYDPELEET--TVLHEGFYFANGV--ALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG-GPDN  108 (225)
Q Consensus        34 ~~~~g~v~~~d~~~~~~--~~~~~~~~~pnGi--~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~  108 (225)
                      +...|.|..+|..++..  ..+......-+.|  ++++++..++++-+..+.|..+++...  .....+.....+ ....
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~--~~~~~~~~~~~~~~v~~  360 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI--ATTKTTVSRFRGSNLVP  360 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH--HHHCEEEEECSCCSCCC
T ss_pred             EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC--CcccccccccccCcccc
Confidence            34478888888764421  2222333445777  568887347788888999999998642  111223222221 2357


Q ss_pred             eEECCCCCEEEEeec
Q 047259          109 INLAPDGSFWVALIK  123 (225)
Q Consensus       109 i~~d~~G~l~v~~~~  123 (225)
                      +++.++|..+++...
T Consensus       361 v~fsp~~~~l~s~~~  375 (524)
T 2j04_B          361 VVYCPQIYSYIYSDG  375 (524)
T ss_dssp             EEEETTTTEEEEECS
T ss_pred             eEeCCCcCeEEEeCC
Confidence            899999988777654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=93.71  E-value=1.2  Score=36.15  Aligned_cols=66  Identities=6%  Similarity=-0.102  Sum_probs=41.8

Q ss_pred             ccccceeEEecCC---CEEEEEeCCCCEEEEEEecCCCCC--ceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           57 FYFANGVALSKDE---NFVVVCESWKFRCRRYWLKGPRQG--RLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        57 ~~~pnGi~~~~dg---~~Lyv~~~~~~~I~~~~~~~~~~~--~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ....+.++|+|++   ..++++-+..+.|..++++....+  ....+. ...+....+++.++|++.++...
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEES
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcC
Confidence            3456899999986   236677778889998987642111  112222 12333467899999987776655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=93.63  E-value=4.2  Score=37.20  Aligned_cols=52  Identities=8%  Similarity=-0.027  Sum_probs=34.1

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      .+.|..+|+. |+++-.+..+..  .. ...+...++.+|++ ...+.+..+++.+.
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~--~~-~g~~~~~g~~v~~g-~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSP--WN-GGTLTTAGNVVFQG-TADGRLVAYHAATG  508 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS--CC-CCEEEETTTEEEEE-CTTSEEEEEETTTC
T ss_pred             ccEEEEEeCCCCcEEeecCCCCC--Cc-CcceEeCCCEEEEE-CCCCcEEEEECCCC
Confidence            5889999985 888877765321  11 12234457788887 46788888887643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.41  E-value=3.1  Score=35.05  Aligned_cols=134  Identities=17%  Similarity=0.123  Sum_probs=72.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..+|..+++......+ ......+++  +++.+ ++....+.|..+++...  .....+. ........+.+  +
T Consensus       257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~i~d~~~~--~~~~~~~-~~~~~v~~~~~--~  328 (445)
T 2ovr_B          257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHV-VSGSLDTSIRVWDVETG--NCIHTLT-GHQSLTSGMEL--K  328 (445)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEE-EEEETTSCEEEEETTTC--CEEEEEC-CCCSCEEEEEE--E
T ss_pred             CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEE-EEEeCCCeEEEEECCCC--CEEEEEc-CCcccEEEEEE--e
Confidence            466777777665554433332 233456666  66655 44455678888887642  1122221 11222234444  4


Q ss_pred             CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe
Q 047259          115 GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF  193 (225)
Q Consensus       115 G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~  193 (225)
                      |+++++...                                    .+.|..+|. .|+.+..+..+.+. -..++.+..+
T Consensus       329 ~~~l~~~~~------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~  371 (445)
T 2ovr_B          329 DNILVSGNA------------------------------------DSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN  371 (445)
T ss_dssp             TTEEEEEET------------------------------------TSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC
T ss_pred             CCEEEEEeC------------------------------------CCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC
Confidence            555555544                                    345666665 47777777754322 2345555554


Q ss_pred             CCEEEEeeCCCCeEEEEeCCCc
Q 047259          194 EDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       194 ~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                      +. ++++....+.|..+++...
T Consensus       372 ~~-~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          372 KN-FVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             SS-EEEEEETTSEEEEEETTTC
T ss_pred             CC-EEEEEeCCCeEEEEECCCC
Confidence            44 4445556678888887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.39  E-value=1  Score=40.87  Aligned_cols=136  Identities=10%  Similarity=-0.060  Sum_probs=74.8

Q ss_pred             EEeCCCCeEEEEecCccccceeEEec-CCCEEEEEeC-----------CCCEEEEEEecCCCCCceeEEeccCCCCCCce
Q 047259           42 KYDPELEETTVLHEGFYFANGVALSK-DENFVVVCES-----------WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI  109 (225)
Q Consensus        42 ~~d~~~~~~~~~~~~~~~pnGi~~~~-dg~~Lyv~~~-----------~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i  109 (225)
                      .+|+.+++++.+..--..+...++.+ +++ |||.-.           ....+++|++..+...............--+.
T Consensus       170 ~~dp~~~~W~~~~~~P~~~~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~  248 (656)
T 1k3i_A          170 APQPGLGRWGPTIDLPIVPAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI  248 (656)
T ss_dssp             CCCTTSCEEEEEEECSSCCSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE
T ss_pred             cCCCCCCeeeeeccCCCCceeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccc
Confidence            34555677776654334567888888 665 777631           12368889887542222221110011122346


Q ss_pred             EECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCccccee
Q 047259          110 NLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVT  188 (225)
Q Consensus       110 ~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t  188 (225)
                      ++..+|+||+.....                                   ...+.++|+. ++....-..|..+  ...+
T Consensus       249 ~~~~~g~lyv~GG~~-----------------------------------~~~v~~yd~~t~~W~~~~~~~~~R--~~~s  291 (656)
T 1k3i_A          249 SMDGNGQIVVTGGND-----------------------------------AKKTSLYDSSSDSWIPGPDMQVAR--GYQS  291 (656)
T ss_dssp             EECTTSCEEEECSSS-----------------------------------TTCEEEEEGGGTEEEECCCCSSCC--SSCE
T ss_pred             cCCCCCCEEEeCCCC-----------------------------------CCceEEecCcCCceeECCCCCccc--cccc
Confidence            777889999987641                                   2257888886 4554332233332  1233


Q ss_pred             EEEEeCCEEEEeeC-C-----CCeEEEEeCCCc
Q 047259          189 SAVEFEDNLYMASI-Q-----SKFVGKLPLNTP  215 (225)
Q Consensus       189 ~~~~~~~~Lyv~~~-~-----~~~i~~~~~~~~  215 (225)
                      .++..+++||+..= .     .+.+.+|+..+.
T Consensus       292 ~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            33333778887643 1     256778877654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.37  E-value=0.34  Score=43.81  Aligned_cols=87  Identities=14%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             EEEEEeCCC-----CeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC------CCC-Ccee-EEecc-CCC
Q 047259           39 QLLKYDPEL-----EETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG------PRQ-GRLE-SFIEH-LPG  104 (225)
Q Consensus        39 ~v~~~d~~~-----~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~------~~~-~~~~-~~~~~-~~g  104 (225)
                      .|-.+|...     ..+...+.....|.|+..+|||++++++.-....+..|+.+.      ..+ .... +..+- +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            355677643     134444555678999999999999999999999999999762      111 1111 12221 223


Q ss_pred             CCCceEECCCCCEEEEeecCC
Q 047259          105 GPDNINLAPDGSFWVALIKMN  125 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~~~  125 (225)
                      .|-..++|++|+.|++.+-.+
T Consensus       379 GPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTT
T ss_pred             cccEEEECCCCceEeeeeecc
Confidence            589999999999999998644

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.96  E-value=2.7  Score=33.09  Aligned_cols=136  Identities=8%  Similarity=-0.068  Sum_probs=73.4

Q ss_pred             CcEEEEEeCCCCeE-----EEEecCccccceeEEecCCCEEEE--EeCCCCEEEEEEecCCCCCceeEEeccCCCCCCce
Q 047259           37 HGQLLKYDPELEET-----TVLHEGFYFANGVALSKDENFVVV--CESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNI  109 (225)
Q Consensus        37 ~g~v~~~d~~~~~~-----~~~~~~~~~pnGi~~~~dg~~Lyv--~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i  109 (225)
                      .|.|..+|..+++.     ............+++.+++..++.  +....+.|..++....   ...... ........+
T Consensus       171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~~~~-~~~~~v~~~  246 (318)
T 4ggc_A          171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAV-DAHSQVCSI  246 (318)
T ss_dssp             TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEEEEE-ECSSCEEEE
T ss_pred             CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---cccccc-cceeeeeee
Confidence            55666666654321     111122233467888887764543  3334456666666432   121111 122234567


Q ss_pred             EECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCccccee
Q 047259          110 NLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVT  188 (225)
Q Consensus       110 ~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t  188 (225)
                      .+.+++...++..+..                                  .+.|...|. .|+.+..+....+    .++
T Consensus       247 ~~~~~~~~~~~~sg~~----------------------------------d~~i~iwd~~~~~~~~~l~gH~~----~V~  288 (318)
T 4ggc_A          247 LWSPHYKELISGHGFA----------------------------------QNQLVIWKYPTMAKVAELKGHTS----RVL  288 (318)
T ss_dssp             EEETTTTEEEEEECTT----------------------------------TCCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred             eecccccceEEEEEcC----------------------------------CCEEEEEECCCCcEEEEEcCCCC----CEE
Confidence            7778777666554411                                  345666664 4788877764433    356


Q ss_pred             EEEEe-CCEEEEeeCCCCeEEEEeCCC
Q 047259          189 SAVEF-EDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       189 ~~~~~-~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      .++.. ++.+.++....+.|..-++..
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            66653 566666666667777766643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.56  E-value=0.78  Score=40.78  Aligned_cols=52  Identities=10%  Similarity=-0.134  Sum_probs=35.5

Q ss_pred             CcEEEEEeCCCCeE-EEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEET-TVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~-~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..+|..++.. ..+.......+.|+++|+|+ ++++-+..+.|..+++..
T Consensus       376 d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          376 ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCS
T ss_pred             CCcEEEEECcccccceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechH
Confidence            45677777665543 33334445678999999998 556667788888887653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=92.23  E-value=4.7  Score=34.08  Aligned_cols=38  Identities=5%  Similarity=-0.136  Sum_probs=25.2

Q ss_pred             CCCcEEEEEeCCCCeEEEEec-Cc---cccceeEEecCCCEE
Q 047259           35 KPHGQLLKYDPELEETTVLHE-GF---YFANGVALSKDENFV   72 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~-~~---~~pnGi~~~~dg~~L   72 (225)
                      ...+.|-.+|.++|+...... +.   .....++|+|||+++
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~l  241 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF  241 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEE
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEE
Confidence            447788888988887544443 22   234456899999754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.18  E-value=5  Score=32.29  Aligned_cols=140  Identities=13%  Similarity=-0.056  Sum_probs=75.3

Q ss_pred             CCcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC------CCEEEEEEecCCCCCceeEEeccCCC-CC
Q 047259           36 PHGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESW------KFRCRRYWLKGPRQGRLESFIEHLPG-GP  106 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~------~~~I~~~~~~~~~~~~~~~~~~~~~g-~P  106 (225)
                      ....+++||+.+++++.+..-  .......+. -++ .|||.--.      .+.+++|++...   ..+.... .|. .-
T Consensus       115 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~-~p~~r~  188 (315)
T 4asc_A          115 CLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF---EWKELAP-MQTARS  188 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTT---EEEECCC-CSSCCB
T ss_pred             ccceEEEECCCCCcEeECCCCCCcccceeEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCC---eEEECCC-CCCchh
Confidence            356799999988888886431  112233333 333 48877533      357899998643   3333221 221 11


Q ss_pred             CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCccc
Q 047259          107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYIS  185 (225)
Q Consensus       107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~  185 (225)
                      ..-+.--+|+||+.......                             .  ....+.++|++. +....-..|..+ . 
T Consensus       189 ~~~~~~~~~~iyv~GG~~~~-----------------------------~--~~~~~~~yd~~~~~W~~~~~~p~~r-~-  235 (315)
T 4asc_A          189 LFGATVHDGRIIVAAGVTDT-----------------------------G--LTSSAEVYSITDNKWAPFEAFPQER-S-  235 (315)
T ss_dssp             SCEEEEETTEEEEEEEECSS-----------------------------S--EEEEEEEEETTTTEEEEECCCSSCC-B-
T ss_pred             ceEEEEECCEEEEEeccCCC-----------------------------C--ccceEEEEECCCCeEEECCCCCCcc-c-
Confidence            11222236789988765211                             0  145789999974 454332333332 1 


Q ss_pred             ceeEEEEeCCEEEEeeCC--------------CCeEEEEeCCCc
Q 047259          186 FVTSAVEFEDNLYMASIQ--------------SKFVGKLPLNTP  215 (225)
Q Consensus       186 ~~t~~~~~~~~Lyv~~~~--------------~~~i~~~~~~~~  215 (225)
                       ...++..+++|||..=.              .+.+.+|++.+.
T Consensus       236 -~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          236 -SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             -SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             -ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence             12334457888886321              245777877654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=91.04  E-value=1.7  Score=39.91  Aligned_cols=82  Identities=20%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCC--CCCCceEECCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLP--GGPDNINLAPD  114 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~--g~Pd~i~~d~~  114 (225)
                      .|.|..+|+.+|++.=........++-.++..+..||+. +.++.|+.|+.+++   +. ++.-.++  ....-+++..+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG---~~-lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTG---EK-LWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTC---CE-EEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCC---cc-ceeeeCCCCcccCceEEEEC
Confidence            489999999888754332222222344666667778877 56789999998742   21 2211122  12234777778


Q ss_pred             CCEEEEeec
Q 047259          115 GSFWVALIK  123 (225)
Q Consensus       115 G~l~v~~~~  123 (225)
                      |+.||+...
T Consensus       529 G~qyv~~~~  537 (689)
T 1yiq_A          529 GEQYVTFMA  537 (689)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=90.67  E-value=6.8  Score=32.90  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=33.4

Q ss_pred             CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .|.|..+|..+++......+ ......+++  +++ ++++-+.++.|..+++..
T Consensus       152 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          152 DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSS
T ss_pred             CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCC
Confidence            67888888877765555443 233455665  666 555556678999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=90.52  E-value=7  Score=32.83  Aligned_cols=139  Identities=11%  Similarity=0.078  Sum_probs=74.0

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEE
Q 047259           35 KPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINL  111 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~  111 (225)
                      ...|.|..+|..+++......+ ......+.+  +++ ++++-..++.|..+++...  .....+...  ..+....+++
T Consensus       296 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDN-ILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETT-EEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEE
T ss_pred             eCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCC-EEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCCCEEEEEE
Confidence            3467788888766665443332 233445555  455 4555566789999998642  122222211  1122345666


Q ss_pred             CCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCC-CCcccceeE
Q 047259          112 APDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPN-ATYISFVTS  189 (225)
Q Consensus       112 d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~-g~~~~~~t~  189 (225)
                      +  +++.++...                                    .+.|..+|. +|+.+..+.... +..-..++.
T Consensus       371 ~--~~~l~s~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          371 N--KNFVITSSD------------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             C--SSEEEEEET------------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             C--CCEEEEEeC------------------------------------CCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence            4  566665554                                    456666775 478777773211 111223555


Q ss_pred             EEEeC-CEEEEeeCCCC----eEEEEeCCCcc
Q 047259          190 AVEFE-DNLYMASIQSK----FVGKLPLNTPE  216 (225)
Q Consensus       190 ~~~~~-~~Lyv~~~~~~----~i~~~~~~~~~  216 (225)
                      +.... +.+.++....+    +|.++++..+.
T Consensus       413 ~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          413 IRASNTKLVCAVGSRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred             EEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence            55543 44433433333    48888887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=90.09  E-value=6.4  Score=31.70  Aligned_cols=139  Identities=14%  Similarity=0.048  Sum_probs=75.4

Q ss_pred             CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeC------CCCEEEEEEecCCCCCceeEEeccCCC-CCC
Q 047259           37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCES------WKFRCRRYWLKGPRQGRLESFIEHLPG-GPD  107 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd  107 (225)
                      ...+++||+.+.+++.+..-  .......+. -++ .|||.--      ..+.+++|++...   ..+.... .+. .-.
T Consensus       126 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~-~p~~r~~  199 (318)
T 2woz_A          126 LDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKG---DWKDLAP-MKTPRSM  199 (318)
T ss_dssp             EEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTT---EEEEECC-CSSCCBS
T ss_pred             cceEEEEeCCCCCEeECCCCCCcccccEEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCC---EEEECCC-CCCCccc
Confidence            45689999988888886421  112233443 344 4887642      1357999998653   3333321 221 111


Q ss_pred             ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccc
Q 047259          108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISF  186 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~  186 (225)
                      .-+.--+|.||+........                               ....+.++|++ .+....-..|... .  
T Consensus       200 ~~~~~~~~~iyv~GG~~~~~-------------------------------~~~~~~~yd~~~~~W~~~~~~p~~r-~--  245 (318)
T 2woz_A          200 FGVAIHKGKIVIAGGVTEDG-------------------------------LSASVEAFDLKTNKWEVMTEFPQER-S--  245 (318)
T ss_dssp             CEEEEETTEEEEEEEEETTE-------------------------------EEEEEEEEETTTCCEEECCCCSSCC-B--
T ss_pred             ceEEEECCEEEEEcCcCCCC-------------------------------ccceEEEEECCCCeEEECCCCCCcc-c--
Confidence            12222367899986542110                               04578899987 4554332334332 1  


Q ss_pred             eeEEEEeCCEEEEeeC--------------CCCeEEEEeCCCc
Q 047259          187 VTSAVEFEDNLYMASI--------------QSKFVGKLPLNTP  215 (225)
Q Consensus       187 ~t~~~~~~~~Lyv~~~--------------~~~~i~~~~~~~~  215 (225)
                      ...++..+++||+..=              ..+.+.+|++.+.
T Consensus       246 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          246 SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            1234456889988631              2356888887653

>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}

Probab=89.79  E-value=4.9  Score=34.15  Aligned_cols=117  Identities=12%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             ecCCCEEEEEeCCCC--EEEEEEecCCCCCceeEEeccCC-C--CCC-ceEECCCCCEEEEeecCCchhhhhhhcChhHH
Q 047259           66 SKDENFVVVCESWKF--RCRRYWLKGPRQGRLESFIEHLP-G--GPD-NINLAPDGSFWVALIKMNQTGVRAIQSCPDKW  139 (225)
Q Consensus        66 ~~dg~~Lyv~~~~~~--~I~~~~~~~~~~~~~~~~~~~~~-g--~Pd-~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r  139 (225)
                      +++++.||.-+...+  .|..|+++...+...-.|-...| |  .+. ++-+-..+.||+....                
T Consensus        36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~----------------   99 (369)
T 3s9j_A           36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNN----------------   99 (369)
T ss_dssp             ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGG----------------
T ss_pred             cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCC----------------
Confidence            445568888888888  99999997532222222211111 1  232 3445567789998877                


Q ss_pred             HHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCC-cccc-------eeEEEEeCCEEEEeeC---------
Q 047259          140 KLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNAT-YISF-------VTSAVEFEDNLYMASI---------  202 (225)
Q Consensus       140 ~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~-~~~~-------~t~~~~~~~~Lyv~~~---------  202 (225)
                                          ...|..+|.+|+++..+...... .+..       -+.+...++.||++..         
T Consensus       100 --------------------~~~i~l~n~~G~~~~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~  159 (369)
T 3s9j_A          100 --------------------ISRLSSINSQGEIIRNYNFQTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKE  159 (369)
T ss_dssp             --------------------GTEEEEECTTCCEEEEEECCCTTSCCCCCCCBTTTTBCCEEETTEEEEECCCSSSSCCGG
T ss_pred             --------------------cceEEEECCCceEEEEEecCCCccccccccccccccCcceecCceEEEeccccccccchh
Confidence                                45899999999999998653322 1110       1123345677888643         


Q ss_pred             ---CCCeEEEEeCCCcccc
Q 047259          203 ---QSKFVGKLPLNTPEAE  218 (225)
Q Consensus       203 ---~~~~i~~~~~~~~~~~  218 (225)
                         ...-++.+++.+...+
T Consensus       160 ~~~k~~~~a~~dl~~~~~~  178 (369)
T 3s9j_A          160 DWPRTHMFASQDLRTGEVK  178 (369)
T ss_dssp             GGGGSEEEEEEETTTCCEE
T ss_pred             hhccCceEEEEECCCCcEE
Confidence               2235666666666555

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.33  E-value=7.1  Score=31.13  Aligned_cols=145  Identities=8%  Similarity=-0.075  Sum_probs=76.1

Q ss_pred             CCcEEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeC------CCCEEEEEEecCCCCCceeEEeccCCC-CC
Q 047259           36 PHGQLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCES------WKFRCRRYWLKGPRQGRLESFIEHLPG-GP  106 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~------~~~~I~~~~~~~~~~~~~~~~~~~~~g-~P  106 (225)
                      ....+++||+.+++++.+..-.  ..-...+.. ++ .|||.--      ..+.+++|++...   ..+.... .+. .-
T Consensus        68 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~---~W~~~~~-~p~~r~  141 (306)
T 3ii7_A           68 PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTE---SWHTKPS-MLTQRC  141 (306)
T ss_dssp             BCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTT---EEEEECC-CSSCCB
T ss_pred             CcceEEEEeCCCCeEEECCCCCccccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCC---ceEeCCC-CcCCcc
Confidence            3568999999988888875321  112233333 34 5888642      2357999998653   3333321 221 11


Q ss_pred             CceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCccc
Q 047259          107 DNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYIS  185 (225)
Q Consensus       107 d~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~  185 (225)
                      ..-++.-+|.||+........                           ........+.++|++. +....-..|...  .
T Consensus       142 ~~~~~~~~~~iyv~GG~~~~~---------------------------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~  192 (306)
T 3ii7_A          142 SHGMVEANGLIYVCGGSLGNN---------------------------VSGRVLNSCEVYDPATETWTELCPMIEAR--K  192 (306)
T ss_dssp             SCEEEEETTEEEEECCEESCT---------------------------TTCEECCCEEEEETTTTEEEEECCCSSCC--B
T ss_pred             eeEEEEECCEEEEECCCCCCC---------------------------CcccccceEEEeCCCCCeEEECCCccchh--h
Confidence            122222367899976542110                           0000034688999874 443322233332  1


Q ss_pred             ceeEEEEeCCEEEEeeC-----CCCeEEEEeCCCcc
Q 047259          186 FVTSAVEFEDNLYMASI-----QSKFVGKLPLNTPE  216 (225)
Q Consensus       186 ~~t~~~~~~~~Lyv~~~-----~~~~i~~~~~~~~~  216 (225)
                      .. .++..+++||+..=     ..+.+.+|++.+..
T Consensus       193 ~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          193 NH-GLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             SC-EEEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             cc-eEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            22 23445888988731     13567888876643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.47  E-value=6.6  Score=31.59  Aligned_cols=138  Identities=12%  Similarity=-0.054  Sum_probs=73.8

Q ss_pred             cEEEEEeCCCCeEEEEecCccc---cceeEEecCCCEEEEEeC--------CCCEEEEEEecCCCCCceeEEeccCCC-C
Q 047259           38 GQLLKYDPELEETTVLHEGFYF---ANGVALSKDENFVVVCES--------WKFRCRRYWLKGPRQGRLESFIEHLPG-G  105 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~~~---pnGi~~~~dg~~Lyv~~~--------~~~~I~~~~~~~~~~~~~~~~~~~~~g-~  105 (225)
                      ..+++||+.+++++.+.. +..   -.+++.. + +.|||.--        ..+.+++|++...   ..+... ..|. .
T Consensus        67 ~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~-~~p~~r  139 (315)
T 4asc_A           67 AYFLQFDHLDSEWLGMPP-LPSPRCLFGLGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESD-PLPYVV  139 (315)
T ss_dssp             EEEEEEETTTTEEEECCC-BSSCEESCEEEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTT---EEEECC-CCSSCC
T ss_pred             cceEEecCCCCeEEECCC-CCcchhceeEEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCC---cEeECC-CCCCcc
Confidence            459999999889887642 222   2344443 3 35887643        2357899998643   333322 1221 1


Q ss_pred             CCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcc
Q 047259          106 PDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYI  184 (225)
Q Consensus       106 Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~  184 (225)
                      -...++.-+|+||+.......                            ..  ....+.++|+.. +....-..|..+  
T Consensus       140 ~~~~~~~~~~~iyv~GG~~~~----------------------------~~--~~~~~~~yd~~~~~W~~~~~~p~~r--  187 (315)
T 4asc_A          140 YGHTVLSHMDLVYVIGGKGSD----------------------------RK--CLNKMCVYDPKKFEWKELAPMQTAR--  187 (315)
T ss_dssp             BSCEEEEETTEEEEECCBCTT----------------------------SC--BCCCEEEEETTTTEEEECCCCSSCC--
T ss_pred             cceeEEEECCEEEEEeCCCCC----------------------------Cc--ccceEEEEeCCCCeEEECCCCCCch--
Confidence            122233346789987654110                            00  145789999874 444332334332  


Q ss_pred             cceeEEEEeCCEEEEeeCC-----CCeEEEEeCCCc
Q 047259          185 SFVTSAVEFEDNLYMASIQ-----SKFVGKLPLNTP  215 (225)
Q Consensus       185 ~~~t~~~~~~~~Lyv~~~~-----~~~i~~~~~~~~  215 (225)
                      ... .++..+++|||..=.     .+.+.+|++.+.
T Consensus       188 ~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          188 SLF-GATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             BSC-EEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             hce-EEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            122 234458888886321     236777777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=86.98  E-value=11  Score=30.67  Aligned_cols=81  Identities=16%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             cEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           38 GQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      |.|++-+-....++.+.... ....+++++++++ +|+... .+.|++-.-.++  ...+.+....+.....++++++|+
T Consensus       142 g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG--~tW~~~~~~~~~~~~~~~~~~~g~  217 (327)
T 2xbg_A          142 GAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQ--TAWEPHNRTTSRRLHNMGFTPDGR  217 (327)
T ss_dssp             CCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTC--SSCEEEECCSSSCEEEEEECTTSC
T ss_pred             ccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCC--CceeECCCCCCCccceeEECCCCC
Confidence            34544332223455554322 2346788888876 444332 356666542211  122222211222345677888889


Q ss_pred             EEEEee
Q 047259          117 FWVALI  122 (225)
Q Consensus       117 l~v~~~  122 (225)
                      +|++..
T Consensus       218 ~~~~~~  223 (327)
T 2xbg_A          218 LWMIVN  223 (327)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            887754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=86.48  E-value=11  Score=30.00  Aligned_cols=139  Identities=10%  Similarity=-0.012  Sum_probs=75.5

Q ss_pred             CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC---------CCEEEEEEecCCCCCceeEEeccCCC-
Q 047259           37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESW---------KFRCRRYWLKGPRQGRLESFIEHLPG-  104 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~---------~~~I~~~~~~~~~~~~~~~~~~~~~g-  104 (225)
                      ...+++||+.+++++.+..-  ...-...+.. ++ .||+.--.         .+.+++|++...   ..+.... .+. 
T Consensus       117 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~---~W~~~~~-~p~~  190 (306)
T 3ii7_A          117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATE---TWTELCP-MIEA  190 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEESCTTTCEECCCEEEEETTTT---EEEEECC-CSSC
T ss_pred             eeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CC-EEEEECCCCCCCCcccccceEEEeCCCCC---eEEECCC-ccch
Confidence            56799999988888887421  1112233333 44 58876421         467899998653   3433322 221 


Q ss_pred             CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCc
Q 047259          105 GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATY  183 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~  183 (225)
                      .-..-++--+|+||+........                               ....+.++|+.. +....-..|... 
T Consensus       191 r~~~~~~~~~~~i~v~GG~~~~~-------------------------------~~~~~~~yd~~~~~W~~~~~~p~~r-  238 (306)
T 3ii7_A          191 RKNHGLVFVKDKIFAVGGQNGLG-------------------------------GLDNVEYYDIKLNEWKMVSPMPWKG-  238 (306)
T ss_dssp             CBSCEEEEETTEEEEECCEETTE-------------------------------EBCCEEEEETTTTEEEECCCCSCCB-
T ss_pred             hhcceEEEECCEEEEEeCCCCCC-------------------------------CCceEEEeeCCCCcEEECCCCCCCc-
Confidence            11112222267898876542100                               034688999874 444332333322 


Q ss_pred             ccceeEEEEeCCEEEEeeC-----CCCeEEEEeCCCc
Q 047259          184 ISFVTSAVEFEDNLYMASI-----QSKFVGKLPLNTP  215 (225)
Q Consensus       184 ~~~~t~~~~~~~~Lyv~~~-----~~~~i~~~~~~~~  215 (225)
                       ... .++..+++|||..=     ..+.+.+|++.+.
T Consensus       239 -~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          239 -VTV-KCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             -SCC-EEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             -cce-eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence             122 23445888888743     3367888887764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.95  E-value=11  Score=29.75  Aligned_cols=139  Identities=9%  Similarity=0.036  Sum_probs=74.8

Q ss_pred             CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeC-----CCCEEEEEEecCCCCCceeEEeccCCC-CCCc
Q 047259           37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCES-----WKFRCRRYWLKGPRQGRLESFIEHLPG-GPDN  108 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~  108 (225)
                      ...+++||+.+++++.+..-  .......+.. ++ .||+.--     ..+.+++|++...   ..+... ..+. .-..
T Consensus       127 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~-~~p~~r~~~  200 (301)
T 2vpj_A          127 HTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SG-VIYCLGGYDGLNILNSVEKYDPHTG---HWTNVT-PMATKRSGA  200 (301)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTTT---EEEEEC-CCSSCCBSC
T ss_pred             cceEEEEcCCCCeEEECCCCCCCcccceEEEE-CC-EEEEECCCCCCcccceEEEEeCCCC---cEEeCC-CCCcccccc
Confidence            56799999988888886421  1112233333 44 4888632     2467899998653   333332 1221 1111


Q ss_pred             eEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccce
Q 047259          109 INLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFV  187 (225)
Q Consensus       109 i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~  187 (225)
                      -++--++.||+.......                             .  ....|.++|++. +....-..|... . ..
T Consensus       201 ~~~~~~~~i~v~GG~~~~-----------------------------~--~~~~v~~yd~~~~~W~~~~~~p~~r-~-~~  247 (301)
T 2vpj_A          201 GVALLNDHIYVVGGFDGT-----------------------------A--HLSSVEAYNIRTDSWTTVTSMTTPR-C-YV  247 (301)
T ss_dssp             EEEEETTEEEEECCBCSS-----------------------------S--BCCCEEEEETTTTEEEEECCCSSCC-B-SC
T ss_pred             eEEEECCEEEEEeCCCCC-----------------------------c--ccceEEEEeCCCCcEEECCCCCCcc-c-ce
Confidence            222235788887654211                             0  034688999874 454332334332 1 12


Q ss_pred             eEEEEeCCEEEEeeCCC-----CeEEEEeCCCc
Q 047259          188 TSAVEFEDNLYMASIQS-----KFVGKLPLNTP  215 (225)
Q Consensus       188 t~~~~~~~~Lyv~~~~~-----~~i~~~~~~~~  215 (225)
                       .++..+++||+..=..     +.+.+|++.+.
T Consensus       248 -~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          248 -GATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             -EEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             -eEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence             2344588898874221     56788887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=85.79  E-value=20  Score=32.51  Aligned_cols=53  Identities=9%  Similarity=0.103  Sum_probs=31.0

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC------ccccceeEEecCCCEEEEEeCC-----CCEEEEEEecC
Q 047259           35 KPHGQLLKYDPELEETTVLHEG------FYFANGVALSKDENFVVVCESW-----KFRCRRYWLKG   89 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~------~~~pnGi~~~~dg~~Lyv~~~~-----~~~I~~~~~~~   89 (225)
                      ...|+|+.+|.++|+..=....      .......++. + +.+||....     .+.|+.++.++
T Consensus       124 ~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~t  187 (668)
T 1kv9_A          124 TLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADT  187 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTT
T ss_pred             cCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCC
Confidence            3468999999888874322211      1112233333 3 358887654     47888888764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=84.79  E-value=1.8  Score=36.32  Aligned_cols=53  Identities=8%  Similarity=-0.155  Sum_probs=36.2

Q ss_pred             CcEEEEEeCCCC-eEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecC
Q 047259           37 HGQLLKYDPELE-ETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~-~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~   89 (225)
                      .+.|..+|..++ ....+.........++|+|++..++++-..++.|..+++..
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            455555664333 33444444556688999999876777777888999998764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=84.51  E-value=14  Score=29.51  Aligned_cols=139  Identities=10%  Similarity=-0.043  Sum_probs=73.8

Q ss_pred             CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeC-----CCCEEEEEEecCCCCCceeEEeccCCC-C-CC
Q 047259           37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCES-----WKFRCRRYWLKGPRQGRLESFIEHLPG-G-PD  107 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~g-~-Pd  107 (225)
                      ...+++||+.+++++.+..-  ...-...+.. ++ .|||.--     ..+.+++|++...   ..+.... .+. . --
T Consensus        89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~-~p~~r~~~  162 (308)
T 1zgk_A           89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERD---EWHLVAP-MLTRRIGV  162 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TT-EEEEECCEETTEECCCEEEEETTTT---EEEECCC-CSSCCBSC
T ss_pred             cceEEEECCCCCeEeECCCCCcCccccEEEEE-CC-EEEEEcCCCCCcccccEEEECCCCC---eEeECCC-CCccccce
Confidence            45689999988888886421  1112233333 44 4888732     2357889998643   3333221 221 1 11


Q ss_pred             ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccc
Q 047259          108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISF  186 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~  186 (225)
                      .+++- ++.||+.......                             .  ....+.++|++. +....-..|...  ..
T Consensus       163 ~~~~~-~~~iyv~GG~~~~-----------------------------~--~~~~~~~yd~~~~~W~~~~~~p~~r--~~  208 (308)
T 1zgk_A          163 GVAVL-NRLLYAVGGFDGT-----------------------------N--RLNSAECYYPERNEWRMITAMNTIR--SG  208 (308)
T ss_dssp             EEEEE-TTEEEEECCBCSS-----------------------------C--BCCCEEEEETTTTEEEECCCCSSCC--BS
T ss_pred             EEEEE-CCEEEEEeCCCCC-----------------------------C--cCceEEEEeCCCCeEeeCCCCCCcc--cc
Confidence            22222 6789987654211                             0  034688999874 443222223322  12


Q ss_pred             eeEEEEeCCEEEEeeCC-----CCeEEEEeCCCcc
Q 047259          187 VTSAVEFEDNLYMASIQ-----SKFVGKLPLNTPE  216 (225)
Q Consensus       187 ~t~~~~~~~~Lyv~~~~-----~~~i~~~~~~~~~  216 (225)
                      . .++..+++|||-.=.     .+.+.+|++.+..
T Consensus       209 ~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          209 A-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             C-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             c-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            2 234458899887422     3678888876643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.29  E-value=16  Score=29.26  Aligned_cols=139  Identities=13%  Similarity=-0.001  Sum_probs=73.0

Q ss_pred             cEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC-------CCEEEEEEecCCCCCceeEEeccCCC-CCC
Q 047259           38 GQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESW-------KFRCRRYWLKGPRQGRLESFIEHLPG-GPD  107 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~-------~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd  107 (225)
                      ..+++||+.+++++.+..-  ...-.+++.. ++ .|||.--.       .+.+++|++...   ..+... ..|. .-.
T Consensus        78 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p~~r~~  151 (318)
T 2woz_A           78 SYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVK-NLPIKVYG  151 (318)
T ss_dssp             BEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEEC-CCSSCEES
T ss_pred             ccEEEEeCCCCcEEECCCCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCC---CEeECC-CCCCcccc
Confidence            3489999988899876421  1122344443 33 58876421       257889988643   333332 1221 111


Q ss_pred             ceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccc
Q 047259          108 NINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISF  186 (225)
Q Consensus       108 ~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~  186 (225)
                      .-++--+|.||+.......                            ..  ....+.++|+.. +....-..|...  ..
T Consensus       152 ~~~~~~~~~iyv~GG~~~~----------------------------~~--~~~~~~~yd~~~~~W~~~~~~p~~r--~~  199 (318)
T 2woz_A          152 HNVISHNGMIYCLGGKTDD----------------------------KK--CTNRVFIYNPKKGDWKDLAPMKTPR--SM  199 (318)
T ss_dssp             CEEEEETTEEEEECCEESS----------------------------SC--BCCCEEEEETTTTEEEEECCCSSCC--BS
T ss_pred             cEEEEECCEEEEEcCCCCC----------------------------CC--ccceEEEEcCCCCEEEECCCCCCCc--cc
Confidence            1222246789987653110                            00  134689999874 444332333332  11


Q ss_pred             eeEEEEeCCEEEEeeC-----CCCeEEEEeCCCc
Q 047259          187 VTSAVEFEDNLYMASI-----QSKFVGKLPLNTP  215 (225)
Q Consensus       187 ~t~~~~~~~~Lyv~~~-----~~~~i~~~~~~~~  215 (225)
                      . .++..+++|||..=     ..+.+.+|++.+.
T Consensus       200 ~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          200 F-GVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             C-EEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             c-eEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            2 23446788888741     1245777777654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.04  E-value=15  Score=30.58  Aligned_cols=58  Identities=14%  Similarity=0.136  Sum_probs=31.2

Q ss_pred             ceeEEec-CCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-----CC------C-CCCceEECCC--CCEEEEee
Q 047259           61 NGVALSK-DENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-----LP------G-GPDNINLAPD--GSFWVALI  122 (225)
Q Consensus        61 nGi~~~~-dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-----~~------g-~Pd~i~~d~~--G~l~v~~~  122 (225)
                      ..|+++| +.+.||++... +.|++.+-.+.   ..+.+...     ++      + ....|+++++  +.||++..
T Consensus       180 ~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~---tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~  252 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSS-GGVFESTDAGT---DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH  252 (394)
T ss_dssp             EEEEECTTCTTCEEEEEET-BEEEEESSTTS---SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred             eEEEECCCCCCEEEEEECC-CCEEEECCCCC---CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence            4688887 34468888643 45776643332   22222111     11      0 1235788876  77888753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=82.25  E-value=17  Score=28.73  Aligned_cols=142  Identities=13%  Similarity=-0.080  Sum_probs=76.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCc--cccceeEEecCCCEEEEEeC-----CCCEEEEEEecCCCCCceeEEeccCCC-CCCc
Q 047259           37 HGQLLKYDPELEETTVLHEGF--YFANGVALSKDENFVVVCES-----WKFRCRRYWLKGPRQGRLESFIEHLPG-GPDN  108 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~--~~pnGi~~~~dg~~Lyv~~~-----~~~~I~~~~~~~~~~~~~~~~~~~~~g-~Pd~  108 (225)
                      ...+++||+.+++++.+..-.  ..-...+.. ++ .||+.--     ..+.+++|++........+.... .+. .-..
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~-~p~~r~~~  106 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HD-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP-MNVRRGLA  106 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC-CSSCCBSC
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CC-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC-CCCCccce
Confidence            457999999888888864211  112233333 33 5887632     23579999987532111444332 221 1111


Q ss_pred             eEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCcccce
Q 047259          109 INLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATYISFV  187 (225)
Q Consensus       109 i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~~~~~  187 (225)
                      .+.--+|.||+.......                             .  ....+.++|+.. +....-..|...  ...
T Consensus       107 ~~~~~~~~lyv~GG~~~~-----------------------------~--~~~~~~~~d~~~~~W~~~~~~p~~r--~~~  153 (301)
T 2vpj_A          107 GATTLGDMIYVSGGFDGS-----------------------------R--RHTSMERYDPNIDQWSMLGDMQTAR--EGA  153 (301)
T ss_dssp             EEEEETTEEEEECCBCSS-----------------------------C--BCCEEEEEETTTTEEEEEEECSSCC--BSC
T ss_pred             eEEEECCEEEEEcccCCC-----------------------------c--ccceEEEEcCCCCeEEECCCCCCCc--ccc
Confidence            222235789988654211                             0  145789999874 554433444332  122


Q ss_pred             eEEEEeCCEEEEeeC-----CCCeEEEEeCCCc
Q 047259          188 TSAVEFEDNLYMASI-----QSKFVGKLPLNTP  215 (225)
Q Consensus       188 t~~~~~~~~Lyv~~~-----~~~~i~~~~~~~~  215 (225)
                      + ++..+++||+..=     ..+.+.+|++.+.
T Consensus       154 ~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          154 G-LVVASGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             E-EEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             e-EEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            2 3345889998631     2466788877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=81.53  E-value=18  Score=28.76  Aligned_cols=139  Identities=7%  Similarity=-0.127  Sum_probs=73.6

Q ss_pred             CcEEEEEeCCCCeEEEEecC--ccccceeEEecCCCEEEEEeCC---------CCEEEEEEecCCCCCceeEEeccCCC-
Q 047259           37 HGQLLKYDPELEETTVLHEG--FYFANGVALSKDENFVVVCESW---------KFRCRRYWLKGPRQGRLESFIEHLPG-  104 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~--~~~pnGi~~~~dg~~Lyv~~~~---------~~~I~~~~~~~~~~~~~~~~~~~~~g-  104 (225)
                      ...+++||+.+++++.+..-  ...-.+++.. + +.||+.--.         .+.+++|++...   ..+.... .+. 
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~---~W~~~~~-~p~~  111 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTN---QWSPCAP-MSVP  111 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTT---EEEECCC-CSSC
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCC---eEeECCC-CCcC
Confidence            45799999998999887321  1112344443 3 358876322         257889988643   3333221 221 


Q ss_pred             CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCC-cEEEEEECCCCCc
Q 047259          105 GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHG-KIIMDFNDPNATY  183 (225)
Q Consensus       105 ~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G-~~~~~~~~p~g~~  183 (225)
                      .-...+.--+|.||+........                               ....+.++|+.. +....-..|... 
T Consensus       112 r~~~~~~~~~~~iyv~GG~~~~~-------------------------------~~~~~~~yd~~~~~W~~~~~~p~~r-  159 (308)
T 1zgk_A          112 RNRIGVGVIDGHIYAVGGSHGCI-------------------------------HHNSVERYEPERDEWHLVAPMLTRR-  159 (308)
T ss_dssp             CBTCEEEEETTEEEEECCEETTE-------------------------------ECCCEEEEETTTTEEEECCCCSSCC-
T ss_pred             ccccEEEEECCEEEEEcCCCCCc-------------------------------ccccEEEECCCCCeEeECCCCCccc-
Confidence            11112222367899876542110                               034688999874 443322334332 


Q ss_pred             ccceeEEEEeCCEEEEeeCC-----CCeEEEEeCCCc
Q 047259          184 ISFVTSAVEFEDNLYMASIQ-----SKFVGKLPLNTP  215 (225)
Q Consensus       184 ~~~~t~~~~~~~~Lyv~~~~-----~~~i~~~~~~~~  215 (225)
                       ...+ ++..+++||+-.=.     .+.+.+|++.+.
T Consensus       160 -~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          160 -IGVG-VAVLNRLLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             -BSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             -cceE-EEEECCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence             1222 33458899986311     456888877654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=80.32  E-value=11  Score=33.74  Aligned_cols=84  Identities=15%  Similarity=0.069  Sum_probs=48.7

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCC--CCCceEECC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPG--GPDNINLAP  113 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g--~Pd~i~~d~  113 (225)
                      ..|.|+.+|+.+|+..=........++-.+.-.+..+|+.. .++.|+.|+.+++   + .++.-.++.  ...-+++..
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~-~dg~l~A~D~~tG---~-~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT-GDGYFKAFDAKSG---K-ELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC-TTSEEEEEETTTC---C-EEEEEECSSCCCSCCEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC-CCCcEEEEECCCC---C-EEEEecCCCCcccCceEEEE
Confidence            46899999998887432211111122323333455688864 5789999998642   2 122111222  223367778


Q ss_pred             CCCEEEEeecC
Q 047259          114 DGSFWVALIKM  124 (225)
Q Consensus       114 ~G~l~v~~~~~  124 (225)
                      +|+.||+....
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            89999997763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	3e-32

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  117 bits (295), Expect = 3e-32
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 21/207 (10%)

Query: 1   FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA 60
             ND++       Y T       P     ++  G     +  Y P   +  V+ EGF FA
Sbjct: 151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFA 208

Query: 61  NGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVA 120
           NG+ +S D  +V + E    +   Y             +       DNI++ P       
Sbjct: 209 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWV 267

Query: 121 LIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPN 180
                          P+  ++     E       L      RI  + +    +      N
Sbjct: 268 GCH------------PNGMRIFFYDAENPPGSEVL------RIQDILSEEPKVTVVYAEN 309

Query: 181 ATYISFVTSAVEFEDNLYMASIQSKFV 207
            T +   T A  ++  L + ++  K +
Sbjct: 310 GTVLQGSTVAAVYKGKLLIGTVFHKAL 336

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.72
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.71
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.71
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.61
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.07
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.98
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.78
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.72
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.48
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.35
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.31
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.2
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.15
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.96
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.81
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.71
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.7
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.67
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.66
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.64
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.63
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.46
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.36
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.34
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.34
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.24
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.07
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.03
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.65
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.46
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.43
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.31
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.24
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.55
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.92
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	94.91
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.42
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	93.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.35
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	92.26
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	92.23
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	91.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	91.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.45
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	90.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	88.97
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	88.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.31
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.57
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	83.47
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.24

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.93  E-value=1e-24  Score=183.13  Aligned_cols=175  Identities=16%  Similarity=0.208  Sum_probs=137.7

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCC----EEEEEe
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDEN----FVVVCE   76 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~----~Lyv~~   76 (225)
                      +|||++++++|+|||||++....  .+........+.|+||+++++ ++...+..++..||||+++++++    .|||++
T Consensus       118 ~pndl~~d~~G~lyvtd~~~~~~--~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         118 GCNDCAFDYEGNLWITAPAGEVA--PADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCT--TSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCcEEEECCCCCEEEecCccCcc--cccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEe
Confidence            48999999999999999873221  111222234678999999986 78888888899999999999875    799999


Q ss_pred             CCCCEEEEEEecC-CCCCceeEEecc---CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           77 SWKFRCRRYWLKG-PRQGRLESFIEH---LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        77 ~~~~~I~~~~~~~-~~~~~~~~~~~~---~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                      +..++|++|+++. ..+...+++...   ..+.||||++|++|+|||+.++                             
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------------------  245 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------------------  245 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------------------
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------------------
Confidence            9999999999864 235555566542   2346999999999999999988                             


Q ss_pred             ccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          153 IPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                             .+.|.++||+ |+++..+..|..    .++.+++.  +++|||++..+++|++++++....+
T Consensus       246 -------~g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         246 -------SSHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             -------TTEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             -------CCEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence                   6799999998 566777887643    46777764  3579999999999999999887754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.92  E-value=4.9e-24  Score=180.95  Aligned_cols=185  Identities=21%  Similarity=0.293  Sum_probs=140.0

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +||||++..+|++|||+++.....-....+.+.+.+.|.|+++|+  ++.+.+++++.+||||+++||++.|||+++..+
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~  228 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAH  228 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCC
Confidence            589999999999999987632111112234556788999999987  467888899999999999999999999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      +|++|++++........+. .+++.||||.+|+ +|.+|++.+......             +...+.       ..  +
T Consensus       229 ~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~~p~~~~~-------------~~~~~~-------~~--~  285 (340)
T d1v04a_         229 KIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRI-------------FFYDAE-------NP--P  285 (340)
T ss_dssp             EEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHH-------------HSCCTT-------SC--C
T ss_pred             eEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEECCcccch-------------hhhccc-------CC--C
Confidence            9999999864333333333 4888999999996 789999998732211             111111       11  1


Q ss_pred             ceEEEEEC----CCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeC
Q 047259          160 GARIVKVD----THGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       160 ~~~V~~~d----~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~  212 (225)
                      ...++++.    .++++.+.+++ +|+.++.+|.++..+++||+++...+.| .|++
T Consensus       286 ~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         286 GSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             CEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             CceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCEEEEEeeeCCce-EecC
Confidence            56777763    35888888888 5777999999999999999999998877 6875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.89  E-value=1e-21  Score=163.18  Aligned_cols=161  Identities=20%  Similarity=0.278  Sum_probs=131.3

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +||+.++++|+|||+++...           .....|.+|+++.  ++++.+..++..|||+++++|++.||++++..++
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             ceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEeecccce
Confidence            69999999999999987621           1234778898874  6888888889999999999999999999999999


Q ss_pred             EEEEEecCC---CCCceeEEec--cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           82 CRRYWLKGP---RQGRLESFIE--HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        82 I~~~~~~~~---~~~~~~~~~~--~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      |++|+++..   ..+....|..  ...+.|||+++|++|+|||+.+.                                 
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~---------------------------------  218 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG---------------------------------  218 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET---------------------------------
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC---------------------------------
Confidence            999998742   2344555554  24567999999999999999988                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeC---CEEEEeeCC-------------CCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFE---DNLYMASIQ-------------SKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~---~~Lyv~~~~-------------~~~i~~~~~~~~  215 (225)
                         .++|.++||+|+++..+..|..    .+|.+++.+   ++|||++..             ++.|.+++....
T Consensus       219 ---~g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~~~~  286 (295)
T d2ghsa1         219 ---EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEVK  286 (295)
T ss_dssp             ---TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSCCC
T ss_pred             ---CCceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcCCCC
Confidence               6799999999999999999853    478888753   789999875             467888876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=1.3e-21  Score=164.06  Aligned_cols=169  Identities=21%  Similarity=0.232  Sum_probs=127.7

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      .|||++++++|+||||++...           .....|.+++++++.+.++.+..++..||||+|++|++.|||+++..+
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             CCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCC
Confidence            379999999999999998621           123578999999986678888889999999999999999999999999


Q ss_pred             EEEEEEecCC-CCCce---eEEec-cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccC
Q 047259           81 RCRRYWLKGP-RQGRL---ESFIE-HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPL  155 (225)
Q Consensus        81 ~I~~~~~~~~-~~~~~---~~~~~-~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  155 (225)
                      +|++|+++.. .....   ..... ...+.||||++|++|+|||++++                                
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~--------------------------------  247 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG--------------------------------  247 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET--------------------------------
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC--------------------------------
Confidence            9999998742 11111   11111 12346999999999999999988                                


Q ss_pred             CCCcceEEEEECCCCcEEEEEECCCCCc--ccceeEEEEe--CCEEEEeeC-----CCCeEEEEeCCCcc
Q 047259          156 GNDAGARIVKVDTHGKIIMDFNDPNATY--ISFVTSAVEF--EDNLYMASI-----QSKFVGKLPLNTPE  216 (225)
Q Consensus       156 ~~~~~~~V~~~d~~G~~~~~~~~p~g~~--~~~~t~~~~~--~~~Lyv~~~-----~~~~i~~~~~~~~~  216 (225)
                          .++|.++||+|+++..+..|....  ...++.++..  ...||+++.     .+..|++++.....
T Consensus       248 ----~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~~G  313 (319)
T d2dg1a1         248 ----QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAKG  313 (319)
T ss_dssp             ----TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSCB
T ss_pred             ----CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCCcc
Confidence                679999999999999999885321  2234555543  367888753     45677777765543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=2e-17  Score=134.01  Aligned_cols=156  Identities=16%  Similarity=0.161  Sum_probs=121.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      .|++|+++++|+||+++..                 ..++++++..+...... ..++..|+||+++++|+ +|+++...
T Consensus        99 ~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~  160 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDN  160 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGGG
T ss_pred             ecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC-Eeeecccc
Confidence            4789999999999999875                 56788888764443332 35678999999999987 99999999


Q ss_pred             CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           80 FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      ++|.+++.++.   ....+.......|.+|++|++|+|||++..                                    
T Consensus       161 ~~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------------------------------------  201 (260)
T d1rwia_         161 NRVVKLEAESN---NQVVLPFTDITAPWGIAVDEAGTVYVTEHN------------------------------------  201 (260)
T ss_dssp             TEEEEECTTTC---CEEECCCSSCCSEEEEEECTTCCEEEEETT------------------------------------
T ss_pred             ccccccccccc---eeeeeeccccCCCccceeeeeeeeeeeecC------------------------------------
Confidence            99999998753   222332222356999999999999999987                                    


Q ss_pred             ceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEEeCCCcc
Q 047259          160 GARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       160 ~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      .+.|.+++++|.....+..  .. +..+++++.+ +|.|||+++.+++|.++.-.++-
T Consensus       202 ~~~i~~~~~~~~~~~~~~~--~~-~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~~~  256 (260)
T d1rwia_         202 TNQVVKLLAGSTTSTVLPF--TG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  256 (260)
T ss_dssp             TTEEEEECTTCSCCEECCC--CS-CCCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCEEEEEeCCCCeEEEEcc--CC-CCCeEEEEEeCCCCEEEEECCCCEEEEEeCCCCc
Confidence            5689999999887655543  22 5567777765 68999999999999999876553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.73  E-value=1.8e-16  Score=130.96  Aligned_cols=161  Identities=14%  Similarity=0.189  Sum_probs=125.1

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      |++++++++||+||+|+..                 .++|++++++ ++.+.+......|+||++++||+ |||++...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCCc
Confidence            5678999999999999987                 6799999987 77788877788999999999998 999999999


Q ss_pred             EEEEEEecCCCCCceeEEecc-CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCc
Q 047259           81 RCRRYWLKGPRQGRLESFIEH-LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDA  159 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  159 (225)
                      .+++++..+. .+....+... ....|++++++++|++|+++..                                    
T Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~------------------------------------  132 (302)
T d2p4oa1          90 SIPVVSLVKS-DGTVETLLTLPDAIFLNGITPLSDTQYLTADSY------------------------------------  132 (302)
T ss_dssp             SCEEEEEECT-TSCEEEEEECTTCSCEEEEEESSSSEEEEEETT------------------------------------
T ss_pred             eEEEEEeccc-ccceeeccccCCccccceeEEccCCCEEeeccc------------------------------------
Confidence            9999887652 2334444432 2246899999999999999876                                    


Q ss_pred             ceEEEEECCCCcEEEEE-ECCCCC------cccceeEEEEeCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          160 GARIVKVDTHGKIIMDF-NDPNAT------YISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       160 ~~~V~~~d~~G~~~~~~-~~p~g~------~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                      .+.++++++++.....+ ..+...      ....+..+...++.||+++...++|+++++.....
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~  197 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDK  197 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSC
T ss_pred             cccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccccc
Confidence            56888998876544433 222111      13345666778999999999999999999887543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.72  E-value=2.2e-16  Score=131.70  Aligned_cols=160  Identities=16%  Similarity=0.175  Sum_probs=118.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEE-EEecCccccceeEEecCCCEEEEEeCC--
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETT-VLHEGFYFANGVALSKDENFVVVCESW--   78 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~pnGi~~~~dg~~Lyv~~~~--   78 (225)
                      +++++++++|+|||+|..                 .++|+++++++++.. ...+....|+||++++||+ |||++..  
T Consensus        42 lEG~~~D~~G~Ly~~D~~-----------------~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~  103 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVF-----------------EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDF  103 (319)
T ss_dssp             EEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTS
T ss_pred             cEeCEECCCCCEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCC
Confidence            478999999999999986                 689999999866544 4456778899999999997 9999754  


Q ss_pred             --CCEEEEEEecCCCCCceeEEeccC--CCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhcc
Q 047259           79 --KFRCRRYWLKGPRQGRLESFIEHL--PGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIP  154 (225)
Q Consensus        79 --~~~I~~~~~~~~~~~~~~~~~~~~--~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  154 (225)
                        ...|++++.++.   ....+....  ...|+++++|++|++|+++.....                            
T Consensus       104 ~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~----------------------------  152 (319)
T d2dg1a1         104 KSTGGIFAATENGD---NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS----------------------------  152 (319)
T ss_dssp             SSCCEEEEECTTSC---SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT----------------------------
T ss_pred             ccceeEEEEcCCCc---eeeeeccCCCcccCCcceeEEeccceeeccccccc----------------------------
Confidence              456777776543   233333322  235899999999999999876321                            


Q ss_pred             CCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          155 LGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       155 ~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      ..  ..+.+.+++++|+.+..+..+    +..+.+++.  ++++||+++...++|.+++++...
T Consensus       153 ~~--~~g~v~~~~~dg~~~~~~~~~----~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g  210 (319)
T d2dg1a1         153 TN--PLGGVYYVSPDFRTVTPIIQN----ISVANGIALSTDEKVLWVTETTANRLHRIALEDDG  210 (319)
T ss_dssp             TB--CCEEEEEECTTSCCEEEEEEE----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cc--CcceeEEEecccceeEEEeec----cceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence            11  268899999998765554431    334566665  356899999999999999987653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=3.3e-16  Score=126.70  Aligned_cols=161  Identities=14%  Similarity=0.176  Sum_probs=120.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      .|.+|+++++|+||+|+..                 .+.+..++..++.......++..|+||+++++++ ||++++.++
T Consensus        58 ~p~gvav~~~g~i~v~d~~-----------------~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~~~  119 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFN-----------------NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNN  119 (260)
T ss_dssp             SCCCEEECTTCCEEEEETT-----------------TEEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEGGGT
T ss_pred             CceEEEEcCCCCEEEeeee-----------------eceeeeeeeccceeeeeeeeeeecccccccccce-eEeeccccc
Confidence            4889999999999999886                 3445444443333333345678999999999997 999999999


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcc
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAG  160 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~  160 (225)
                      ++++++..+.   ....+.......|.+|+++++|++|+++..                                    .
T Consensus       120 ~~~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~------------------------------------~  160 (260)
T d1rwia_         120 RVVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGNVYVTDTD------------------------------------N  160 (260)
T ss_dssp             EEEEECTTCS---SCEECCCCSCCSCCEEEECTTCCEEEEEGG------------------------------------G
T ss_pred             cccccccccc---eeeeeeecccCCcceeeecCCCCEeeeccc------------------------------------c
Confidence            9999987652   122222112246999999999999999977                                    6


Q ss_pred             eEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCcccccCC
Q 047259          161 ARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTPEAELAP  221 (225)
Q Consensus       161 ~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~  221 (225)
                      .+|.+++++|.....+....   +..+.+++. .+|.|||+++.+++|.++..++......+
T Consensus       161 ~~i~~~d~~~~~~~~~~~~~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~  219 (260)
T d1rwia_         161 NRVVKLEAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP  219 (260)
T ss_dssp             TEEEEECTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC
T ss_pred             ccccccccccceeeeeeccc---cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc
Confidence            68999999987766555422   456777766 47899999999999999998877655543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.71  E-value=5.8e-16  Score=127.83  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=110.7

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-----------cCccccceeEEecCC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-----------EGFYFANGVALSKDE   69 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-----------~~~~~pnGi~~~~dg   69 (225)
                      +||+++++++|++|++++.                 .+.+++++..++......           .....+|||.++.  
T Consensus       114 ~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--  174 (302)
T d2p4oa1         114 FLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--  174 (302)
T ss_dssp             CEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--
T ss_pred             ccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCcccccccccccC--
Confidence            4799999999999999987                 578888888766555432           2345688998864  


Q ss_pred             CEEEEEeCCCCEEEEEEecCC-CCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhh
Q 047259           70 NFVVVCESWKFRCRRYWLKGP-RQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPEL  148 (225)
Q Consensus        70 ~~Lyv~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~  148 (225)
                      +.||++++..++|++++.++. .......+.  ....|++|++|++|+||++...                         
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~-------------------------  227 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHI-------------------------  227 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBT-------------------------
T ss_pred             CceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcC-------------------------
Confidence            579999999999999998753 233344443  2346999999999999999987                         


Q ss_pred             hhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe-----CCEEEEeeCC
Q 047259          149 INLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF-----EDNLYMASIQ  203 (225)
Q Consensus       149 ~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~-----~~~Lyv~~~~  203 (225)
                                 .++|.+++++|+.......+.+  +..++.+++.     ++.|||++.+
T Consensus       228 -----------~~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         228 -----------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----------CCcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCC
Confidence                       5689999999998777665444  4568888773     3689998765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.69  E-value=1.1e-15  Score=127.39  Aligned_cols=175  Identities=17%  Similarity=0.202  Sum_probs=120.0

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-----CccccceeEEecCCCEEEEE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-----GFYFANGVALSKDENFVVVC   75 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~pnGi~~~~dg~~Lyv~   75 (225)
                      +|++++++++|+|||++.....          ...+.|+|+++|++++..+....     ....|+||++++|++.|||+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~----------~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va   88 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEV----------NGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA   88 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEE----------TTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECcccc----------ccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE
Confidence            4789999999999999876210          12247899999998787766542     23469999999999989999


Q ss_pred             eCCCCEEEEEEecCCCCCceeEEeccCC----CCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh
Q 047259           76 ESWKFRCRRYWLKGPRQGRLESFIEHLP----GGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL  151 (225)
Q Consensus        76 ~~~~~~I~~~~~~~~~~~~~~~~~~~~~----g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  151 (225)
                      +.. +.|+++++++.   ..++......    ..|+++++|++|+||+++..........      ..            
T Consensus        89 d~~-~~i~~~~~~g~---~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~------~~------------  146 (314)
T d1pjxa_          89 DMR-LGLLVVQTDGT---FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY------TR------------  146 (314)
T ss_dssp             ETT-TEEEEEETTSC---EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC------CB------------
T ss_pred             ECC-CeEEEEeCCCc---EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccc------cc------------
Confidence            865 68999998763   1222211111    2489999999999999987633110000      00            


Q ss_pred             hccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCC----EEEEeeCCCCeEEEEeCCCc
Q 047259          152 LIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FED----NLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       152 ~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~----~Lyv~~~~~~~i~~~~~~~~  215 (225)
                         ...+..+.|++++++|+.......     +..+++++.  .++    +||+++...++|++++++..
T Consensus       147 ---~~~~~~G~v~~~~~dg~~~~~~~~-----~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~  208 (314)
T d1pjxa_         147 ---SMQEKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP  208 (314)
T ss_dssp             ---TTSSSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred             ---eeccCCceEEEEeecCceeEeeCC-----cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence               011127899999999987655432     223444443  222    79999999999999987643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=8.2e-15  Score=119.52  Aligned_cols=155  Identities=10%  Similarity=0.159  Sum_probs=118.5

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeE-EEE--ecCccccceeEEecCCCEEEEEeC
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEET-TVL--HEGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~--~~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      .|++++++++|++|+++..                 .+++++++++ +++ ...  ...+..|.+|+++++++ +|+++.
T Consensus       115 ~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~  175 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN  175 (279)
T ss_dssp             CEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred             ccceeccccCCcEEEEeec-----------------cceeeEeccC-Cceeecccccccccccceeeecccee-EEeeec
Confidence            3678999999999999886                 5688888886 443 332  24578899999999986 999999


Q ss_pred             CCCEEEEEEecCCCCCceeEEec-cCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      ..++|++|+.++.   ....+.. .....|.+|++|++|+|||++...                                
T Consensus       176 ~~~~V~~~d~~G~---~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~--------------------------------  220 (279)
T d1q7fa_         176 RAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHN--------------------------------  220 (279)
T ss_dssp             GGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSS--------------------------------
T ss_pred             cccceeeeecCCc---eeeeecccccccCCcccccccCCeEEEEECCC--------------------------------
Confidence            9999999998763   2223321 122369999999999999998652                                


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                         ..+|.+++++|+.+..+..+..  ...+..++. .+|.|||++ .+++|.+|+....
T Consensus       221 ---~~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~~~  274 (279)
T d1q7fa_         221 ---NFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQL  274 (279)
T ss_dssp             ---SCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEECSCC
T ss_pred             ---CcEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEeeee
Confidence               4578999999999888875422  334666654 578999998 5799999987754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.4e-14  Score=113.61  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=118.7

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE-EecCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV-LHEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |.+|+++. .++||++|..                 .++|.+++.+...... +...+..|.+|+++|..+.||+++.+.
T Consensus        79 p~glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~  141 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  141 (266)
T ss_dssp             CCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             cceEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC
Confidence            77899997 5689999986                 5688888876444433 456678999999999888999999765


Q ss_pred             -CEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           80 -FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        80 -~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                       .+|+|.+++|.   ..+.+....-..|.+|++|.. ++||+++..                                  
T Consensus       142 ~~~I~r~~~dGs---~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~----------------------------------  184 (266)
T d1ijqa1         142 PAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSK----------------------------------  184 (266)
T ss_dssp             SCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETT----------------------------------
T ss_pred             CcceeEeccCCC---ceecccccccceeeEEEeeccccEEEEecCC----------------------------------
Confidence             58999999873   344555333357999999975 569999876                                  


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                        .+.|.+++.+|.-...+...... +..+.+++..+++||++++.++.|.++++.+
T Consensus       185 --~~~I~~~~~dG~~~~~~~~~~~~-~~~p~~lav~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         185 --LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             --TTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             --cCEEEEEECCCCCEEEEEeCCCc-ccccEEEEEECCEEEEEECCCCeEEEEECCC
Confidence              56899999998654444322222 4567778888999999999999999997654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.6e-13  Score=111.40  Aligned_cols=154  Identities=10%  Similarity=0.105  Sum_probs=117.8

Q ss_pred             CCcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE-ecCccccceeEEecCCCEEEEEeCCC
Q 047259            2 TNDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL-HEGFYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         2 pndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      |.+++++. .++||+++..                 .++|.+++.+....+.+ ..++..|.+|+++|..+.||+++.+.
T Consensus        81 p~~iAvD~~~~~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~  143 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (263)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             ccEEEEeccCCeEEEeccC-----------------CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC
Confidence            67899986 5689999876                 56888888764444444 45678999999999999999999764


Q ss_pred             --CEEEEEEecCCCCCceeEEeccCCCCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           80 --FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        80 --~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                        .+|+|.+++|.   ..+.+....-..|.+|++|.. ++||+++..                                 
T Consensus       144 ~~~~I~r~~~dG~---~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~---------------------------------  187 (263)
T d1npea_         144 DNPKIETSHMDGT---NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG---------------------------------  187 (263)
T ss_dssp             SSCEEEEEETTSC---CCEEEECTTCSCEEEEEEETTTTEEEEEETT---------------------------------
T ss_pred             CCcEEEEecCCCC---CceeeeeecccccceEEEeecCcEEEEEeCC---------------------------------
Confidence              47999999873   333444222247999999965 569999877                                 


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                         .+.|.+++.+|.-.+.+..  +  ...+.+++..+++||++++..+.|.++++.+.
T Consensus       188 ---~~~I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         188 ---THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             ---TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             ---CCEEEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence               5689999999876655543  2  23466777789999999999999999999753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=2e-13  Score=111.13  Aligned_cols=156  Identities=14%  Similarity=0.239  Sum_probs=117.2

Q ss_pred             CCCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-------CccccceeEEecCCC-EE
Q 047259            1 FTNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-------GFYFANGVALSKDEN-FV   72 (225)
Q Consensus         1 ~pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-------~~~~pnGi~~~~dg~-~L   72 (225)
                      +|.+|+++++|+|||+|..                 +.+|.++|++ |++.....       ....|.++++..+.. .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~-----------------n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   85 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTN-----------------NHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDII   85 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGG-----------------GTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             CccEEEEcCCCCEEEEECC-----------------CCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccc
Confidence            5899999999999999986                 5789999986 65443321       234689999887655 44


Q ss_pred             EEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhh
Q 047259           73 VVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLL  152 (225)
Q Consensus        73 yv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  152 (225)
                      ++++..+++|.+++.++.   ....+.......|.++++|++|++|+++..                             
T Consensus        86 ~~~~~~~~~i~~~~~~g~---~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-----------------------------  133 (279)
T d1q7fa_          86 VTERSPTHQIQIYNQYGQ---FVRKFGATILQHPRGVTVDNKGRIIVVECK-----------------------------  133 (279)
T ss_dssp             EEECGGGCEEEEECTTSC---EEEEECTTTCSCEEEEEECTTSCEEEEETT-----------------------------
T ss_pred             eeccCCcccccccccccc---ceeecCCCcccccceeccccCCcEEEEeec-----------------------------
Confidence            555667779988887652   222332222346899999999999999876                             


Q ss_pred             ccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE-eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          153 IPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE-FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       153 ~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~-~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                             ..++.+++++|+++..+..+.+  +..+..++. .++.||+++...++|.+++.++.
T Consensus       134 -------~~~~~~~~~~g~~~~~~g~~~~--~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~  188 (279)
T d1q7fa_         134 -------VMRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ  188 (279)
T ss_dssp             -------TTEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC
T ss_pred             -------cceeeEeccCCceeeccccccc--ccccceeeeccceeEEeeeccccceeeeecCCc
Confidence                   5688999999999888876433  456666665 46899999999999999998775

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.1e-12  Score=104.76  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=121.0

Q ss_pred             cEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe-cCccccceeEEecCCCEEEEEeCCCCE
Q 047259            4 DVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH-EGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +|+++. +++||++|..                 .+.|++++.+.+..+.+. .++..|.||+++.-++.||+++...++
T Consensus        40 ~ld~D~~~~~iywsd~~-----------------~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~  102 (263)
T d1npea_          40 GLAFDCVDKVVYWTDIS-----------------EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR  102 (263)
T ss_dssp             EEEEETTTTEEEEEETT-----------------TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEeCCCEEEEEECC-----------------CCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCE
Confidence            466775 5679999887                 568999887655555544 567899999999877889999999999


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcc
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAG  160 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~  160 (225)
                      |.++++++.   ..+++.......|.++++|+ .|.+|+++.+..                                  .
T Consensus       103 I~~~~~dg~---~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~----------------------------------~  145 (263)
T d1npea_         103 IEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD----------------------------------N  145 (263)
T ss_dssp             EEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSS----------------------------------S
T ss_pred             EEEEecCCc---eEEEEecccccCCcEEEEecccCcEEEeecCCC----------------------------------C
Confidence            999999863   33344433334699999998 577999987721                                  4


Q ss_pred             eEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          161 ARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       161 ~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                      ..|.+.+.+|+-...+... +  +..+++++.+  +++||+++...+.|.++++++...+
T Consensus       146 ~~I~r~~~dG~~~~~i~~~-~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~  202 (263)
T d1npea_         146 PKIETSHMDGTNRRILAQD-N--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR  202 (263)
T ss_dssp             CEEEEEETTSCCCEEEECT-T--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred             cEEEEecCCCCCceeeeee-c--ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE
Confidence            5799999999766566542 2  4467777754  7999999999999999999887654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.3e-12  Score=102.90  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             cEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCC----C-eEEEEecCccccceeEEecCCCEEEEEeC
Q 047259            4 DVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPEL----E-ETTVLHEGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         4 dv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~----~-~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      +|+++. .+.||++|..                 .+.|++.+.+.    . ....+..++..|.|||++.-++.||+++.
T Consensus        34 ~id~d~~~~~lYw~D~~-----------------~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~   96 (266)
T d1ijqa1          34 ALDTEVASNRIYWSDLS-----------------QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS   96 (266)
T ss_dssp             EEEEETTTTEEEEEETT-----------------TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCEEEEEECC-----------------CCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEec
Confidence            466665 4579999886                 45777776541    1 22334567788999999998889999999


Q ss_pred             CCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC-CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCC
Q 047259           78 WKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP-DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLG  156 (225)
Q Consensus        78 ~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~-~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  156 (225)
                      ..++|.++++++.   ....+.......|.+|++|+ .|.||+++.+.                                
T Consensus        97 ~~~~I~v~~~~g~---~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~--------------------------------  141 (266)
T d1ijqa1          97 VLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--------------------------------  141 (266)
T ss_dssp             TTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSS--------------------------------
T ss_pred             CCCEEEeEecCCc---eEEEEEcCCCCCcceEEEEcccCeEEEeccCC--------------------------------
Confidence            9999999999873   23333332334699999998 68899998762                                


Q ss_pred             CCcceEEEEECCCCcEEEEEECCCCCcccceeEEEEe--CCEEEEeeCCCCeEEEEeCCCccccc
Q 047259          157 NDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEF--EDNLYMASIQSKFVGKLPLNTPEAEL  219 (225)
Q Consensus       157 ~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~--~~~Lyv~~~~~~~i~~~~~~~~~~~~  219 (225)
                         .+.|.+.+.+|.....+....   +..+++++.+  +++||+++...+.|.++++++...+.
T Consensus       142 ---~~~I~r~~~dGs~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~  200 (266)
T d1ijqa1         142 ---PAKIKKGGLNGVDIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  200 (266)
T ss_dssp             ---SCEEEEEETTSCCEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ---CcceeEeccCCCceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEE
Confidence               468999999998766665422   3456777654  78999999999999999999876443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.25  E-value=4.5e-10  Score=91.90  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=110.1

Q ss_pred             CcEEEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ++...++ +|+|||+|..                 .++|+++|+++++.+.. .-...|.+|++.+||+ |+++..  +.
T Consensus        21 Egp~wd~~~~~l~wvDi~-----------------~~~I~r~d~~~g~~~~~-~~~~~~~~i~~~~dg~-l~va~~--~g   79 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNIL-----------------ERELHELHLASGRKTVH-ALPFMGSALAKISDSK-QLIASD--DG   79 (295)
T ss_dssp             EEEEEETTTTEEEEEEGG-----------------GTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTE-EEEEET--TE
T ss_pred             eCCeEECCCCEEEEEECC-----------------CCEEEEEECCCCeEEEE-ECCCCcEEEEEecCCC-EEEEEe--Cc
Confidence            4566665 6789999886                 67999999988877654 3335688999999986 777753  58


Q ss_pred             EEEEEecCCCCCceeEEeccC---CC-CCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           82 CRRYWLKGPRQGRLESFIEHL---PG-GPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~---~g-~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      |++++++++   ..+.+....   +. .|+.+.+|++|++|++......                            .. 
T Consensus        80 l~~~d~~tg---~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~----------------------------~~-  127 (295)
T d2ghsa1          80 LFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA----------------------------ET-  127 (295)
T ss_dssp             EEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC----------------------------CT-
T ss_pred             cEEeecccc---eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc----------------------------cc-
Confidence            999998753   455554321   22 4788999999999999876211                            01 


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCcccc
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTPEAE  218 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~~~  218 (225)
                       ..+.+.+++ +|++......     +..+..++.  +++.||+++...++|++++++.+...
T Consensus       128 -~~g~l~~~~-~g~~~~~~~~-----~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         128 -GAGSIYHVA-KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             -TCEEEEEEE-TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             -cceeEeeec-CCcEEEEeec-----cCCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence             156777775 5776555542     223444544  46789999999999999998765543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.07  E-value=6.1e-09  Score=87.37  Aligned_cols=168  Identities=11%  Similarity=0.057  Sum_probs=107.8

Q ss_pred             CCCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeC-CCCeEEEE-----ecCccccceeEEecCCCEEE
Q 047259            1 FTNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDP-ELEETTVL-----HEGFYFANGVALSKDENFVV   73 (225)
Q Consensus         1 ~pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~~~~~-----~~~~~~pnGi~~~~dg~~Ly   73 (225)
                      +|++++++|||+ +|+++.+                 ..+|+.++. .++.+...     ......|.+++++||++.+|
T Consensus       146 h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y  208 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             cceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEE
Confidence            467899999997 8888876                 345555542 23444432     12356899999999999999


Q ss_pred             EEeCCCCEEEEEEecCCCCCceeEEec--cC-C-------------CCCCceEECCCCC-EEEEeecCCchhhhhhhcCh
Q 047259           74 VCESWKFRCRRYWLKGPRQGRLESFIE--HL-P-------------GGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCP  136 (225)
Q Consensus        74 v~~~~~~~I~~~~~~~~~~~~~~~~~~--~~-~-------------g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~  136 (225)
                      ++....+.|..|++++...........  .. +             ..|..|+++++|+ ||++..+....         
T Consensus       209 v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~---------  279 (365)
T d1jofa_         209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE---------  279 (365)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT---------
T ss_pred             EeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc---------
Confidence            999999999999987532211111110  00 0             1256799999997 78887652210         


Q ss_pred             hHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEEEEE---ECC-CCCcccceeEEE--E-eCCEEEEeeCCCCeEEE
Q 047259          137 DKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKIIMDF---NDP-NATYISFVTSAV--E-FEDNLYMASIQSKFVGK  209 (225)
Q Consensus       137 ~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~---~~p-~g~~~~~~t~~~--~-~~~~Lyv~~~~~~~i~~  209 (225)
                                        ..  ....+++++.+|.+....   ..+ .|+   .+-.+.  + .+.+||+++..++.|.+
T Consensus       280 ------------------~~--~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         280 ------------------LQ--GYIAGFKLRDCGSIEKQLFLSPTPTSGG---HSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             ------------------SC--CEEEEEEECTTSCEEEEEEEEECSSCCT---TCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ------------------cc--eEEEEEEecCCCceeeEeEeeEEEcCCC---CccEEEecCCCCCEEEEEeCCCCeEEE
Confidence                              00  134557788888764332   222 233   222233  2 46789999999999999


Q ss_pred             EeCCCccc
Q 047259          210 LPLNTPEA  217 (225)
Q Consensus       210 ~~~~~~~~  217 (225)
                      ++++.+.-
T Consensus       337 ~~~~~~~l  344 (365)
T d1jofa_         337 YRWKDEFL  344 (365)
T ss_dssp             EEEETTEE
T ss_pred             EEEeCCcC
Confidence            98876653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.98  E-value=1.7e-08  Score=79.81  Aligned_cols=82  Identities=13%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      .+.|..+|.+++++.........|.+|+++|||++||++....++|..+++.+.  .....+.  ....|.+++++++|.
T Consensus        11 ~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--~~~~~~~--~~~~~~~~~~~~~~~   86 (301)
T d1l0qa2          11 SDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVP--AGSSPQGVAVSPDGK   86 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEE--CSSSEEEEEECTTSS
T ss_pred             CCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--ceeeeee--ccccccccccccccc
Confidence            678999999889877766666789999999999999999999999999998642  1122221  334688999999998


Q ss_pred             EEEEee
Q 047259          117 FWVALI  122 (225)
Q Consensus       117 l~v~~~  122 (225)
                      .+++..
T Consensus        87 ~~~~~~   92 (301)
T d1l0qa2          87 QVYVTN   92 (301)
T ss_dssp             EEEEEE
T ss_pred             cccccc
Confidence            554433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=9e-09  Score=82.80  Aligned_cols=83  Identities=19%  Similarity=0.238  Sum_probs=57.0

Q ss_pred             EEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCC
Q 047259           39 QLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDG  115 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G  115 (225)
                      +||-++.. +.++++  .+....|.+|+++|||++||++....++|..|+++... ...+... ......|.++++++||
T Consensus        17 ~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~-~~~~~~~~~~~~~~p~~l~~spDg   94 (333)
T d1ri6a_          17 HVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-GALTFAAESALPGSLTHISTDHQG   94 (333)
T ss_dssp             EEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEECSSCCSEEEECTTS
T ss_pred             EEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEeeecccCCCceEEEEcCCC
Confidence            44544443 444443  35557899999999999999999999999999887431 1111111 1234569999999999


Q ss_pred             C-EEEEeec
Q 047259          116 S-FWVALIK  123 (225)
Q Consensus       116 ~-l~v~~~~  123 (225)
                      + ||++...
T Consensus        95 ~~l~v~~~~  103 (333)
T d1ri6a_          95 QFVFVGSYN  103 (333)
T ss_dssp             SEEEEEETT
T ss_pred             CEEeecccC
Confidence            8 6776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.79  E-value=1.8e-07  Score=76.57  Aligned_cols=106  Identities=9%  Similarity=-0.026  Sum_probs=71.5

Q ss_pred             CCcEEEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC--
Q 047259            2 TNDVIEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW--   78 (225)
Q Consensus         2 pndv~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~--   78 (225)
                      .+++++.||| ++|+++...             ....+.|+.+|..++++........ +.+++|+|||++||++...  
T Consensus        23 ~~~~a~spdg~~~~~~~~~~-------------~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~~l~va~~~~~   88 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAH-------------HSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             ccccccCCCCCEEEEEcccc-------------cCCCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCCEEEEEeecCC
Confidence            4678899999 599998762             2346789999998887665554433 4489999999999998754  


Q ss_pred             -------CCEEEEEEecCCCCCceeEEe-cc-----CCCCCCceEECCCCC-EEEEeec
Q 047259           79 -------KFRCRRYWLKGPRQGRLESFI-EH-----LPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        79 -------~~~I~~~~~~~~~~~~~~~~~-~~-----~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                             .+.|..++..+...  ...+. ..     ....|.++.+.++|+ +|+....
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  145 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             cccccccceEEEEEECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc
Confidence                   35677788764311  11111 00     112478899999886 5666554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.78  E-value=5.2e-07  Score=70.91  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      |.+++++|||+ ||+++..                 .+.|..||..+++..........|.++++++|++.+|++.....
T Consensus        34 p~~va~spdG~~l~v~~~~-----------------~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAH-----------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASS   96 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGG-----------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCceeeeeeccccccccccccccccccccccccc
Confidence            67899999996 7888765                 67899999988877666666778999999999999999999988


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .+..++..+.   .....+. ....|..++++++|+.++....
T Consensus        97 ~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          97 TLSVIDTTSN---TVAGTVK-TGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             EEEEEETTTT---EEEEEEE-CSSSEEEEEECTTSSEEEEEET
T ss_pred             eeeecccccc---eeeeecc-ccccceEEEeecCCCeeeeeec
Confidence            9988887642   2222222 3445788999999986554433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.75  E-value=1.3e-07  Score=81.62  Aligned_cols=176  Identities=12%  Similarity=0.188  Sum_probs=101.6

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC---------ccccceeEEecC---C
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG---------FYFANGVALSKD---E   69 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---------~~~pnGi~~~~d---g   69 (225)
                      |-+|++.+||+||||+..                 .|+|++++.++++.+.+..-         ...--||+++||   .
T Consensus        29 P~~la~~pdg~llVter~-----------------~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n   91 (450)
T d1crua_          29 PHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN   91 (450)
T ss_dssp             EEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred             ceEEEEeCCCeEEEEEec-----------------CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccC
Confidence            568999999999999764                 68999999877776665421         122347999985   4


Q ss_pred             CEEEEEeCC------------CCEEEEEEecCC--CCCceeEEeccCCC----CCCceEECCCCCEEEEeecCCchhhhh
Q 047259           70 NFVVVCESW------------KFRCRRYWLKGP--RQGRLESFIEHLPG----GPDNINLAPDGSFWVALIKMNQTGVRA  131 (225)
Q Consensus        70 ~~Lyv~~~~------------~~~I~~~~~~~~--~~~~~~~~~~~~~g----~Pd~i~~d~~G~l~v~~~~~~~~~~~~  131 (225)
                      .++|++.+.            ...|.++..+..  .....+++....+.    .-..|++++||.||++...........
T Consensus        92 ~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~  171 (450)
T d1crua_          92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAY  171 (450)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGG
T ss_pred             CEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccc
Confidence            689997641            224666666542  12222333322221    235799999999999988743211100


Q ss_pred             h--hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCCCcEE-----------EEEECCCCCcccceeEEEEe-CCEE
Q 047259          132 I--QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTHGKII-----------MDFNDPNATYISFVTSAVEF-EDNL  197 (225)
Q Consensus       132 ~--~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~-----------~~~~~p~g~~~~~~t~~~~~-~~~L  197 (225)
                      .  ......      .+..............+.|+|++++|+.-           +.++.  |  +..+-.++.+ +++|
T Consensus       172 ~~~~~~~~~------~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~--G--~RNp~g~~~~p~g~l  241 (450)
T d1crua_         172 LFLPNQAQH------TPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL--G--HRNPQGLAFTPNGKL  241 (450)
T ss_dssp             TTSCCCTTC------CCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB--C--CSEEEEEEECTTSCE
T ss_pred             ccccccccc------CcccccccccccccccCceEEeeccccccccccccccccceEEEe--c--cccccceeeccccee
Confidence            0  000000      00000000001111268999999998642           33443  3  3455556554 6899


Q ss_pred             EEeeCCC
Q 047259          198 YMASIQS  204 (225)
Q Consensus       198 yv~~~~~  204 (225)
                      |.++.+.
T Consensus       242 ~~~e~G~  248 (450)
T d1crua_         242 LQSEQGP  248 (450)
T ss_dssp             EEEEECS
T ss_pred             eeccccc
Confidence            9998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.5e-06  Score=69.25  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=70.9

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcE--EEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEe
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQ--LLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCE   76 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~--v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~   76 (225)
                      +++|++.|||+ ||++...                 .+.  +|.++......+..  ......|.+|+++|||++||++.
T Consensus        39 v~~la~spDG~~L~v~~~~-----------------d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVRP-----------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             CCCEEECTTSSEEEEEETT-----------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred             EeEEEEeCCCCEEEEEECC-----------------CCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecc
Confidence            67899999996 8888664                 344  45666554444443  23445799999999999999999


Q ss_pred             CCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEeec
Q 047259           77 SWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        77 ~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      ...+.|..+..+.......... ...+..|.++.++++|+ ++++...
T Consensus       102 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_         102 YNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             cCCCceeeeccccccceecccc-cCCCccceEEEeeecceeeeccccc
Confidence            9999998888764311111111 12345688999999998 4555444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.70  E-value=1.2e-07  Score=78.85  Aligned_cols=183  Identities=10%  Similarity=0.126  Sum_probs=106.7

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCC-cchhhhhcccCCCCcEEEEEeCCCC--eEEEE-e-cC-----ccccceeEE--ecCC
Q 047259            2 TNDVIEASDGSLYFTVSSKKYT-PAEYYKDLVEGKPHGQLLKYDPELE--ETTVL-H-EG-----FYFANGVAL--SKDE   69 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~-~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~-~-~~-----~~~pnGi~~--~~dg   69 (225)
                      |+||++++||.+|++..- +++ ...+     .....|.|+.+|.++.  +...+ . .+     .-.|.||.+  ++||
T Consensus        37 ~EDi~~~~dg~~~issg~-~~~~~~~~-----~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg  110 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGL-KYPGIMSF-----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDN  110 (340)
T ss_dssp             CCEEEECTTSEEEEEECC-CC-------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTC
T ss_pred             cceEEECCCCcEEEEecC-ccCCCCCC-----CCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCC
Confidence            789999999988877432 121 1111     1244799999997543  22222 1 11     136999987  4455


Q ss_pred             C-EEEEEeC--CCCEEEEEEecCC--CCCceeEEeccCCCCCCceEECCCCCEEEEeec-CCchhhhhhhcChhHHHHHH
Q 047259           70 N-FVVVCES--WKFRCRRYWLKGP--RQGRLESFIEHLPGGPDNINLAPDGSFWVALIK-MNQTGVRAIQSCPDKWKLLQ  143 (225)
Q Consensus        70 ~-~Lyv~~~--~~~~I~~~~~~~~--~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~-~~~~~~~~~~~~~~~r~~~~  143 (225)
                      + +|||.+-  ...+|-.|+++..  .+.....+.......|+.+++.++|.+|+++.. ...         +..+. +.
T Consensus       111 ~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~---------~~~~~-~e  180 (340)
T d1v04a_         111 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFID---------PYLKS-WE  180 (340)
T ss_dssp             CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCS---------HHHHH-HH
T ss_pred             cEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcC---------hhhhh-hh
Confidence            5 5777764  4456766666532  111111211112346999999999999999633 221         11111 11


Q ss_pred             hhhhhhhhhccCCCCcceEEEEECCCCcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          144 AYPELINLLIPLGNDAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       144 ~~p~~~~~~~~~~~~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                             .+. ..+  .+.|+.+|+...  ..+..  +  +..+++++.  +++.|||++....+|.+|++++..
T Consensus       181 -------~~~-~~~--~g~v~~~~~~~~--~~~~~--~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         181 -------MHL-GLA--WSFVTYYSPNDV--RVVAE--G--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             -------HHT-TCC--CEEEEEECSSCE--EEEEE--E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -------Hhh-cCC--ceeEEEEcCCce--EEEcC--C--CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence                   011 122  688899986532  22222  1  334666665  467999999999999999998653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=3.9e-07  Score=73.72  Aligned_cols=103  Identities=14%  Similarity=0.112  Sum_probs=68.9

Q ss_pred             EEcCCC-cEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC------
Q 047259            6 IEASDG-SLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW------   78 (225)
Q Consensus         6 ~~~~dG-~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~------   78 (225)
                      +..||| ++|+++...             +...+.||.+|.+++++.........| +++|||||++||++...      
T Consensus         8 a~spdg~~~~v~~~~~-------------~~~~~~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~   73 (355)
T d2bbkh_           8 APAPDARRVYVNDPAH-------------FAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIAR   73 (355)
T ss_dssp             CCCCCTTEEEEEECGG-------------GCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTE
T ss_pred             eeCCCCCEEEEEeccc-------------CCCcCeEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCccccc
Confidence            457888 589997651             123678999999888866555443344 79999999999998742      


Q ss_pred             ---CCEEEEEEecCCCCCceeEEecc-----CCCCCCceEECCCCC-EEEEeec
Q 047259           79 ---KFRCRRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        79 ---~~~I~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                         .+.|..|+..+...- .++....     ....|.+++++++|+ ++++...
T Consensus        74 g~~d~~v~v~D~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  126 (355)
T d2bbkh_          74 GERTDYVEVFDPVTLLPT-ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  126 (355)
T ss_dssp             EEEEEEEEEECTTTCCEE-EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             cCCCCEEEEEECCCCCEE-EEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence               467888887653111 1111111     223588999999987 6676654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.65  E-value=6.8e-07  Score=76.07  Aligned_cols=138  Identities=10%  Similarity=-0.002  Sum_probs=88.3

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEE----
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINL----  111 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~----  111 (225)
                      .|.|..+|.+++++.........|.++++||||++||++.. .+.|..+++++.   ......+ .....|.++++    
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~---~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMK---EPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSS---SCCEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCC---CceEEEEEecCCCCCCeEEeccc
Confidence            78999999998888777666678999999999999999864 579999998652   2111111 11224666655    


Q ss_pred             CCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCC----Ccc-
Q 047259          112 APDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNA----TYI-  184 (225)
Q Consensus       112 d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g----~~~-  184 (225)
                      ++||+ ||++...                                    .+.|..+|.+ |+++..+.....    ..+ 
T Consensus       117 SpDG~~l~vs~~~------------------------------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~  160 (432)
T d1qksa2         117 GWEDKYAIAGAYW------------------------------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYH  160 (432)
T ss_dssp             TCTTTEEEEEEEE------------------------------------TTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred             CCCCCEEEEEcCC------------------------------------CCeEEEEeCccccceeeeccCCccccceecc
Confidence            45897 6787766                                    3456667754 666665543110    001 


Q ss_pred             --cceeEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 047259          185 --SFVTSAVE--FEDNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       185 --~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~  214 (225)
                        +....++.  ++..++++....+.|..++...
T Consensus       161 ~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~  194 (432)
T d1qksa2         161 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTD  194 (432)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred             CCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence              11112222  3566777777777777776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=3.4e-07  Score=76.35  Aligned_cols=119  Identities=8%  Similarity=0.071  Sum_probs=71.3

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcch-hhhhcccCCCCcEEEEEeCCCCeEEEEe-----cCccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAE-YYKDLVEGKPHGQLLKYDPELEETTVLH-----EGFYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~-~~~~~~~~~~~g~v~~~d~~~~~~~~~~-----~~~~~pnGi~~~~dg~~Lyv   74 (225)
                      |..++++++|+ +|++..+  ++-.. +...+......+.++.++.. ++.+...     +....|.+++++|||++||+
T Consensus        85 p~~v~~~~~~~~~~v~~a~--~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v  161 (365)
T d1jofa_          85 PRANDADTNTRAIFLLAAK--QPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECS--STTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             cEEEEECCCCCEEEEEEec--CCCCEEEEeEccCCCCcceeEeeeec-ceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence            45567777774 6766554  21111 11112223345566666653 4433221     23457899999999999999


Q ss_pred             EeCCCCEEEEEEecCC-CCCceeEEecc-CCCCCCceEECCCCC-EEEEeec
Q 047259           75 CESWKFRCRRYWLKGP-RQGRLESFIEH-LPGGPDNINLAPDGS-FWVALIK  123 (225)
Q Consensus        75 ~~~~~~~I~~~~~~~~-~~~~~~~~~~~-~~g~Pd~i~~d~~G~-l~v~~~~  123 (225)
                      ++.+.++|++|+.+.. .+......... ....|.+++++++|+ +||+...
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence            9999999999987632 11111111111 224699999999998 5666544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.64  E-value=9.6e-08  Score=76.56  Aligned_cols=100  Identities=8%  Similarity=-0.024  Sum_probs=74.3

Q ss_pred             cEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCE
Q 047259            4 DVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      ++++.++|+.+++.+.                 .+.|..||.+++++....  .....|.+++++|||+++||+....++
T Consensus         1 g~a~~~~~~~l~~~~~-----------------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNY-----------------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEET-----------------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcC-----------------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc
Confidence            4678889988888665                 679999999988865533  445679999999999999999999999


Q ss_pred             EEEEEecCCCCCceeEEe-cc----CCCCCCceEECCCCC-EEEEee
Q 047259           82 CRRYWLKGPRQGRLESFI-EH----LPGGPDNINLAPDGS-FWVALI  122 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~-~~----~~g~Pd~i~~d~~G~-l~v~~~  122 (225)
                      |..+++....  ....+. ..    ....|.++++++||+ +|++..
T Consensus        64 v~~~d~~t~~--~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          64 IYGIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEETTTTE--EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             EEEEeCccCe--eeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            9999987521  111111 11    112589999999997 777754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.64  E-value=1e-07  Score=81.87  Aligned_cols=182  Identities=10%  Similarity=0.039  Sum_probs=108.3

Q ss_pred             cCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCEEE-
Q 047259            8 ASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWKFRCR-   83 (225)
Q Consensus         8 ~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~-   83 (225)
                      ++||+ ||+++..                 +++|.++|.++.+.....  .....|+|++++|||+++||+....+.+- 
T Consensus        80 tpDGr~lfV~d~~-----------------~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          80 RYDGKYLFINDKA-----------------NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             EEEEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCCEEEEEcCC-----------------CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            46885 8888876                 679999999888876654  45788999999999999999987665542 


Q ss_pred             -----------------EEEecCCCCCceeEEec-cCCCCCCceEECCCCC-EEEEeecCCc-hhhh--------hhhcC
Q 047259           84 -----------------RYWLKGPRQGRLESFIE-HLPGGPDNINLAPDGS-FWVALIKMNQ-TGVR--------AIQSC  135 (225)
Q Consensus        84 -----------------~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d~~G~-l~v~~~~~~~-~~~~--------~~~~~  135 (225)
                                       .++..+     .++..+ ..++.|.+++++++|+ +|+++..... ..+.        ++...
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t-----~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~  217 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAET-----MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF  217 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTT-----CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE
T ss_pred             cCcccccccccccceEEeecCcc-----ceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC
Confidence                             233322     111111 1356799999999997 6777765321 1111        11110


Q ss_pred             hhHHHHHHhhhhhhhhhccCCCCcceEEEEECC--CCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          136 PDKWKLLQAYPELINLLIPLGNDAGARIVKVDT--HGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       136 ~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~--~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                       .+.......|++-....+     ...+..++.  ..+++..+..  |+-.. -..+.++++++|+++..++.|.++++.
T Consensus       218 -n~p~~~~~~~dGk~~~v~-----~~~v~vvd~~~~~~v~~~IPv--gksPh-Gv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         218 -NVERIAAAVKAGNFKTIG-----DSKVPVVDGRGESEFTRYIPV--PKNPH-GLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             -EHHHHHHHHHTTCCBCCT-----TCCCCEEECSSSCSSEEEECC--BSSCC-CEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             -CccceEEEecCCCEEEeC-----CCCcEEEEcccCCceEEEEeC--CCCcc-CceECCCCCEEEEeCCcCCcEEEEEee
Confidence             111111222322111111     122334332  3455555543  43122 223345678899999999999999987


Q ss_pred             CcccccC
Q 047259          214 TPEAELA  220 (225)
Q Consensus       214 ~~~~~~~  220 (225)
                      +..+.+.
T Consensus       289 k~~~~~~  295 (441)
T d1qnia2         289 KLDDLFE  295 (441)
T ss_dssp             GHHHHTT
T ss_pred             hhhhHhh
Confidence            7665443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.64  E-value=4.3e-07  Score=74.86  Aligned_cols=158  Identities=5%  Similarity=-0.179  Sum_probs=97.3

Q ss_pred             CcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC----
Q 047259            3 NDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES----   77 (225)
Q Consensus         3 ndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~----   77 (225)
                      .+++..++|+ .|++....             .....+||.+|.+++++........ ..+++++|||+.||++..    
T Consensus        23 ~~~a~~~~~~~~~v~~~~~-------------~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~   88 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAY-------------FAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFAR   88 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTT-------------TCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETT
T ss_pred             cccccCCCCcceeEEeecc-------------CCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCcc
Confidence            3455666774 55554331             1236789999999888766655443 448999999999999874    


Q ss_pred             -----CCCEEEEEEecCCCCCceeEEecc-----CCCCCCceEECCCCC-EEEEeecCCchhhhhhhcChhHHHHHHhhh
Q 047259           78 -----WKFRCRRYWLKGPRQGRLESFIEH-----LPGGPDNINLAPDGS-FWVALIKMNQTGVRAIQSCPDKWKLLQAYP  146 (225)
Q Consensus        78 -----~~~~I~~~~~~~~~~~~~~~~~~~-----~~g~Pd~i~~d~~G~-l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p  146 (225)
                           ..+.|..||..+.... .++-...     ....|.++++.+||+ ||++...                       
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~-~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~-----------------------  144 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-----------------------  144 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-----------------------
T ss_pred             ccccccCCeEEEEECCCCcEe-eeecCCccceecccCCccceEECCCCCEEEEEeCC-----------------------
Confidence                 2456888987642110 1111110     123589999999996 7887765                       


Q ss_pred             hhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          147 ELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                                   .+.+..+|.. ++++..+..|....      +...+...++.....+.+..+.+....+
T Consensus       145 -------------~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         145 -------------SSAAAGLSVPGASDDQLTKSASCFH------IHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             -------------SSCEEEEEETTTEEEEEEECSSCCC------CEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             -------------CCeEEEEECCCCcEeEEeeccCcce------EccCCCceEEEEcCCCCEEEEEecCCce
Confidence                         3456667754 77778777764421      1223344555555556666665554443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.48  E-value=2.1e-06  Score=72.95  Aligned_cols=156  Identities=10%  Similarity=-0.025  Sum_probs=96.4

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEE--EecCccccceeEE----ecCCCEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTV--LHEGFYFANGVAL----SKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~--~~~~~~~pnGi~~----~~dg~~Lyv   74 (225)
                      |+++++.|||+ +|++..                  .|.|..+|..+++.+.  -+.....|.++++    +|||++||+
T Consensus        64 ~~~v~fSpDG~~l~~~s~------------------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGR------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             EEEEEECTTSCEEEEEET------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             eeEEEECCCCCEEEEEcC------------------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            67889999996 555432                  4678888876554322  2334456777765    569999999


Q ss_pred             EeCCCCEEEEEEecCCCCCceeEEecc----------CCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHh
Q 047259           75 CESWKFRCRRYWLKGPRQGRLESFIEH----------LPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQA  144 (225)
Q Consensus        75 ~~~~~~~I~~~~~~~~~~~~~~~~~~~----------~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~  144 (225)
                      +....+.|..++.++.  .....+...          ..+.+..+.++++|..++.....                    
T Consensus       126 s~~~~~~v~i~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~--------------------  183 (432)
T d1qksa2         126 GAYWPPQYVIMDGETL--EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--------------------  183 (432)
T ss_dssp             EEEETTEEEEEETTTC--CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT--------------------
T ss_pred             EcCCCCeEEEEeCccc--cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc--------------------
Confidence            9999999999998653  111122110          01123356778888755443331                    


Q ss_pred             hhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCCCCcccceeEEEE--eCCEEEEeeCCCCeEEEEeCCCc
Q 047259          145 YPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPNATYISFVTSAVE--FEDNLYMASIQSKFVGKLPLNTP  215 (225)
Q Consensus       145 ~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~--~~~~Lyv~~~~~~~i~~~~~~~~  215 (225)
                                     .+.|..++.. ++.......+.|+   .+..+..  ++.++|+++..++.|..++....
T Consensus       184 ---------------~~~i~~~d~~~~~~~~~~~i~~g~---~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         184 ---------------TGKILLVDYTDLNNLKTTEISAER---FLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             ---------------TTEEEEEETTCSSEEEEEEEECCS---SEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ---------------CCeEEEEEccCCCcceEEEEcccC---ccccceECCCCCEEEEeccccceEEEeecccc
Confidence                           4567777654 5544443333444   2333333  45679999999999999887653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.35  E-value=1.1e-05  Score=67.63  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=57.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec-cCCCCCCceEEC---
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE-HLPGGPDNINLA---  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~-~~~g~Pd~i~~d---  112 (225)
                      .|.|..+|..++++.........|.+|+|||||++||++.. .+.|..+++++.   +...... .....|.++.++   
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~---~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAK---EPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSS---SCEEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCC---ceeEEEEEeCCCCCcceEEeeee
Confidence            78999999988887665655667999999999999998865 478999998753   2211111 112235566554   


Q ss_pred             -CCCC-EEEEeec
Q 047259          113 -PDGS-FWVALIK  123 (225)
Q Consensus       113 -~~G~-l~v~~~~  123 (225)
                       +||+ ++++...
T Consensus       117 spDG~~l~v~~~~  129 (426)
T d1hzua2         117 GYEDRYTIAGAYW  129 (426)
T ss_dssp             TCTTTEEEEEEEE
T ss_pred             cCCCCEEEEeecC
Confidence             6887 5676655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.31  E-value=1.3e-05  Score=63.54  Aligned_cols=102  Identities=19%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-------ccccceeEEecCCCEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-------FYFANGVALSKDENFVV   73 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~pnGi~~~~dg~~Ly   73 (225)
                      |.+++++|||+ +|++...                 .+.|+.||..+++.......       ...|.+++++|||++||
T Consensus        42 p~~l~~spDG~~l~v~~~~-----------------~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNH-----------------YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             SCEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             cceEEECCCCCEEEEEECC-----------------CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence            77899999996 7888765                 57899999988766543221       24689999999999999


Q ss_pred             EEeCC-----------CCEEEEEEecCCC-CCceeEEeccCCCCCCceEECCCCCEEEEee
Q 047259           74 VCESW-----------KFRCRRYWLKGPR-QGRLESFIEHLPGGPDNINLAPDGSFWVALI  122 (225)
Q Consensus        74 v~~~~-----------~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~  122 (225)
                      ++...           ...+..++..... .......  ..+.....+....+|++|++..
T Consensus       105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T d1jmxb_         105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAGP  163 (346)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEESS
T ss_pred             EEecCCcceeeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeCC
Confidence            98753           4456666654321 1111111  1233345566667788887653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=1.5e-05  Score=62.93  Aligned_cols=99  Identities=24%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC------ccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG------FYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------~~~pnGi~~~~dg~~Lyv   74 (225)
                      |.+++++|||+ +|++...                 .+.|..||..+++.......      ...+.+++++||++.+|+
T Consensus        36 ~~~i~~spDg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~   98 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATVNK-----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             CCCEEECTTSSEEEEEETT-----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             ccEEEECCCCCEEEEEECC-----------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEE
Confidence            67899999996 6777654                 67899999988876544321      356889999999999999


Q ss_pred             EeCC-----------CCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC-EEEEe
Q 047259           75 CESW-----------KFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS-FWVAL  121 (225)
Q Consensus        75 ~~~~-----------~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~-l~v~~  121 (225)
                      +...           ..++..++....   ...... ..+..|.+++++++|+ +|++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETL---SRRKAF-EAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTT---EEEEEE-ECCSSCCCEEECTTSSCEEEES
T ss_pred             eecCCcceeeeccccccceeeccccCC---eEEEec-cccCCceEEEEcCCCCEEEEEc
Confidence            8753           345555665431   111111 1345689999999996 55543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=1.7e-05  Score=62.72  Aligned_cols=85  Identities=11%  Similarity=-0.070  Sum_probs=60.7

Q ss_pred             CcEEEEEeCCCCeEEEEe---cCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccC----CCCCCce
Q 047259           37 HGQLLKYDPELEETTVLH---EGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHL----PGGPDNI  109 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~---~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~----~g~Pd~i  109 (225)
                      .++|..||..++++....   .....|.+|+++|||++|||+....+.|..|+++++.  ....+....    ...+.++
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~v   87 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCE
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecCCCcccccceeeE
Confidence            689999999888765443   2346789999999999999999888999999987531  111111111    1257899


Q ss_pred             EECCCCC-EEEEeec
Q 047259          110 NLAPDGS-FWVALIK  123 (225)
Q Consensus       110 ~~d~~G~-l~v~~~~  123 (225)
                      ++.++|+ +|++...
T Consensus        88 ~~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          88 ALSPDGKTLAIYESP  102 (337)
T ss_dssp             EECTTSSEEEEEEEE
T ss_pred             EEcCCCcEEEEeecC
Confidence            9999987 5666554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.04  E-value=4.7e-05  Score=60.64  Aligned_cols=95  Identities=18%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             EEcC-CCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC-CEEE
Q 047259            6 IEAS-DGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK-FRCR   83 (225)
Q Consensus         6 ~~~~-dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~-~~I~   83 (225)
                      .+.| ||+++.+.+                  .|.|+.+|..++.+..+. .......++|+|||++|+++.... ..|+
T Consensus         9 ~fSP~dG~~~a~~~------------------~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~   69 (360)
T d1k32a3           9 DFSPLDGDLIAFVS------------------RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLG   69 (360)
T ss_dssp             EEEECGGGCEEEEE------------------TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred             cccCCCCCEEEEEE------------------CCeEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEE
Confidence            4677 787766643                  478999999877776653 445678999999999887665444 4677


Q ss_pred             EEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           84 RYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .++.+++   ..+.+. ...+....++++++|+..++...
T Consensus        70 v~d~~~~---~~~~~~-~~~~~v~~~~~spdg~~l~~~~~  105 (360)
T d1k32a3          70 IYDYRTG---KAEKFE-ENLGNVFAMGVDRNGKFAVVAND  105 (360)
T ss_dssp             EEETTTC---CEEECC-CCCCSEEEEEECTTSSEEEEEET
T ss_pred             EEECCCC---cEEEee-CCCceEEeeeecccccccceecc
Confidence            7777642   333333 23344578899999987776655

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.00  E-value=1.1e-05  Score=66.17  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=59.4

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec--------CccccceeEEecCCCEE
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE--------GFYFANGVALSKDENFV   72 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--------~~~~pnGi~~~~dg~~L   72 (225)
                      .+.+++.+||+ ||+.+.+  +++      ...+...+.|..||..+++......        ....|.+++|+|||++|
T Consensus        67 ~~~~a~spDg~~i~~~~~~--~~~------~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l  138 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTS--FAR------SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL  138 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEE--ETT------TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred             CCcceECCCCCEEEEEccc--Ccc------ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEE
Confidence            45688899995 8887654  111      2223457789999988777554321        24568999999999999


Q ss_pred             EEEeCCCCEEEEEEecC
Q 047259           73 VVCESWKFRCRRYWLKG   89 (225)
Q Consensus        73 yv~~~~~~~I~~~~~~~   89 (225)
                      ||+....+.|..+++.+
T Consensus       139 ~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             EEEECSSSCEEEEEETT
T ss_pred             EEEeCCCCeEEEEECCC
Confidence            99999889999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.96  E-value=0.00012  Score=61.11  Aligned_cols=71  Identities=10%  Similarity=0.027  Sum_probs=48.8

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecCccccceeEE----ecCCCEEEEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEGFYFANGVAL----SKDENFVVVC   75 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~----~~dg~~Lyv~   75 (225)
                      |++++++|||+..++-+.                 .|.|..+|.++++....  ......|.++++    +|||++||++
T Consensus        64 ~~~vafSPDGk~l~~~~~-----------------d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~  126 (426)
T d1hzua2          64 VHISRMSASGRYLLVIGR-----------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG  126 (426)
T ss_dssp             EEEEEECTTSCEEEEEET-----------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             eeEEEECCCCCEEEEEeC-----------------CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEe
Confidence            567889999974433222                 46788888876654332  233345555555    5799999999


Q ss_pred             eCCCCEEEEEEecC
Q 047259           76 ESWKFRCRRYWLKG   89 (225)
Q Consensus        76 ~~~~~~I~~~~~~~   89 (225)
                      ....+.+..++...
T Consensus       127 ~~~~~~v~i~d~~~  140 (426)
T d1hzua2         127 AYWPPQFAIMDGET  140 (426)
T ss_dssp             EEESSEEEEEETTT
T ss_pred             ecCCCeEEEEcCCc
Confidence            98889998888764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.81  E-value=0.00012  Score=62.30  Aligned_cols=78  Identities=5%  Similarity=-0.113  Sum_probs=49.1

Q ss_pred             CCcEEEcCCCc-EEEEcCCCCCCcchhh--hhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCC
Q 047259            2 TNDVIEASDGS-LYFTVSSKKYTPAEYY--KDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         2 pndv~~~~dG~-iy~td~~~~~~~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      |+++++.++|+ +|++.... +....-.  ..+........+-.+|..+.++.........|.+++++|||+++|++..+
T Consensus       118 phgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         118 IHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             ccceEEeccCCEEEEEeccC-CcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence            67899999995 78886652 2211000  00111122345567888766655444444679999999999999999876


Q ss_pred             CC
Q 047259           79 KF   80 (225)
Q Consensus        79 ~~   80 (225)
                      .+
T Consensus       197 se  198 (441)
T d1qnia2         197 SE  198 (441)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=0.00091  Score=53.19  Aligned_cols=136  Identities=10%  Similarity=0.017  Sum_probs=83.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc---C---CCCCCce
Q 047259           37 HGQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH---L---PGGPDNI  109 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~---~---~g~Pd~i  109 (225)
                      .|.|..+|..+++........ ...+.++++|+++.| ++-...+.|..++....  .....+...   .   .+.-..+
T Consensus       168 d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l-~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF-ASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTC--CEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccCcccccc-ccccccccccccccccc--ccccccccccccccccccccccc
Confidence            567888888766655555443 345899999999855 44555678888887642  111222110   1   1123468


Q ss_pred             EECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCccccee
Q 047259          110 NLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVT  188 (225)
Q Consensus       110 ~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t  188 (225)
                      +++++|++.++...                                    .+.|...|. .|+++..+...... .....
T Consensus       245 ~~s~~~~~l~tgs~------------------------------------Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~  287 (311)
T d1nr0a1         245 TWSPDGTKIASASA------------------------------------DKTIKIWNVATLKVEKTIPVGTRI-EDQQL  287 (311)
T ss_dssp             EECTTSSEEEEEET------------------------------------TSEEEEEETTTTEEEEEEECCSSG-GGCEE
T ss_pred             ccCCCCCEEEEEeC------------------------------------CCeEEEEECCCCcEEEEEECCCCc-cceEE
Confidence            99999997776544                                    345666664 58888888754321 22333


Q ss_pred             EEEEeCCEEEEeeCCCCeEEEEeCC
Q 047259          189 SAVEFEDNLYMASIQSKFVGKLPLN  213 (225)
Q Consensus       189 ~~~~~~~~Lyv~~~~~~~i~~~~~~  213 (225)
                      .+...+..|+.++ .++.|...+++
T Consensus       288 ~~~~~~~~l~s~s-~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIWTKQALVSIS-ANGFINFVNPE  311 (311)
T ss_dssp             EEEECSSCEEEEE-TTCCEEEEETT
T ss_pred             EEEecCCEEEEEE-CCCEEEEEeCC
Confidence            4455567776665 56788777653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.0019  Score=51.29  Aligned_cols=131  Identities=11%  Similarity=0.026  Sum_probs=80.4

Q ss_pred             CCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      ..|.+..+|..+++.............++++|+++.|++ -...+.|..++++..   ...... ........+++.++|
T Consensus       203 ~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~d~~i~i~d~~~~---~~~~~~-~~~~~i~~v~~s~~g  277 (337)
T d1gxra_         203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV-GMESSNVEVLHVNKP---DKYQLH-LHESCVLSLKFAYCG  277 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE-EETTSCEEEEETTSS---CEEEEC-CCSSCEEEEEECTTS
T ss_pred             ccccccccccccceeecccccccceEEEEEcccccccce-ecccccccccccccc---cccccc-ccccccceEEECCCC
Confidence            367788888776665444444456688999999986654 445678888988642   221111 122345688999999


Q ss_pred             CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe-
Q 047259          116 SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF-  193 (225)
Q Consensus       116 ~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~-  193 (225)
                      ++.++...                                    .+.|...|. .|+.+..+... +    .++.+... 
T Consensus       278 ~~l~s~s~------------------------------------Dg~i~iwd~~~~~~~~~~~~~-~----~v~~~~~s~  316 (337)
T d1gxra_         278 KWFVSTGK------------------------------------DNLLNAWRTPYGASIFQSKES-S----SVLSCDISV  316 (337)
T ss_dssp             SEEEEEET------------------------------------TSEEEEEETTTCCEEEEEECS-S----CEEEEEECT
T ss_pred             CEEEEEeC------------------------------------CCeEEEEECCCCCEEEEccCC-C----CEEEEEEeC
Confidence            98777654                                    345555654 47776666542 2    34555543 


Q ss_pred             CCEEEEeeCCCCeEEEEeC
Q 047259          194 EDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       194 ~~~Lyv~~~~~~~i~~~~~  212 (225)
                      ++++.++....+.|.+.++
T Consensus       317 d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         317 DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEE
Confidence            4554455455666766653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.71  E-value=0.0012  Score=52.12  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=55.7

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEE
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFW  118 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~  118 (225)
                      .|+.+|.++++.+.+.........++|+|||+.|..+ ...+.++.++.++.   ...............+++.++|++.
T Consensus        67 ~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETG---KPTVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTSCEE
T ss_pred             EEEEEECCCCcEEEeeCCCceEEeeeeccccccccee-cccccccccccccc---ceeeeeecccccccchhhccceeee
Confidence            5788888888888877777778999999999966544 55678888888753   2222222233456789999999865


Q ss_pred             EE
Q 047259          119 VA  120 (225)
Q Consensus       119 v~  120 (225)
                      +.
T Consensus       143 a~  144 (360)
T d1k32a3         143 AY  144 (360)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.70  E-value=0.00031  Score=59.17  Aligned_cols=170  Identities=11%  Similarity=-0.050  Sum_probs=98.8

Q ss_pred             CcEEEEEeCCCCeEEEEe--cCccccceeEEecCCCEEEEEeCCCCEE-------------------EEEEecCCCCCce
Q 047259           37 HGQLLKYDPELEETTVLH--EGFYFANGVALSKDENFVVVCESWKFRC-------------------RRYWLKGPRQGRL   95 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~--~~~~~pnGi~~~~dg~~Lyv~~~~~~~I-------------------~~~~~~~~~~~~~   95 (225)
                      ++||.++|.++-++..+.  .....+.|+...+++++.||...+..++                   ..+|.+.     .
T Consensus       109 n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~t-----m  183 (459)
T d1fwxa2         109 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK-----W  183 (459)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTT-----T
T ss_pred             CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCC-----c
Confidence            789999999887876654  5577889999999999999988555433                   3454432     1


Q ss_pred             eEEec-cCCCCCCceEECCCCCE-EEEeecCC--chhhhhhhcCh------hHHHHHHhhhhhhhhhccCCCCcceEEEE
Q 047259           96 ESFIE-HLPGGPDNINLAPDGSF-WVALIKMN--QTGVRAIQSCP------DKWKLLQAYPELINLLIPLGNDAGARIVK  165 (225)
Q Consensus        96 ~~~~~-~~~g~Pd~i~~d~~G~l-~v~~~~~~--~~~~~~~~~~~------~~r~~~~~~p~~~~~~~~~~~~~~~~V~~  165 (225)
                      ++-.+ ..++.|+++.++++|++ |+++....  ..+.+......      .+.+....++.+---.       -..|-.
T Consensus       184 ~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e-------ingV~V  256 (459)
T d1fwxa2         184 EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE-------LNGVKV  256 (459)
T ss_dssp             EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE-------ETTEEE
T ss_pred             eEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE-------eCCcee
Confidence            11111 24567999999999985 55544321  22333322211      1222222222211000       112233


Q ss_pred             ECCC---C-cEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCcccccCC
Q 047259          166 VDTH---G-KIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEAELAP  221 (225)
Q Consensus       166 ~d~~---G-~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~~~~~  221 (225)
                      +|..   + .++..+..|.+  .. -..+.+++..+|++.-.++.+.++++..-.+.++.
T Consensus       257 VD~~~~~~~~v~~yIPVpKs--PH-GV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~  313 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIANN--PH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE  313 (459)
T ss_dssp             EECSGG--CSSEEEEEEESS--CC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred             ecccccCCcceeEEEecCCC--CC-ceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc
Confidence            4432   2 34444544332  22 22345678999999999999999999876665543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=0.004  Score=50.13  Aligned_cols=101  Identities=12%  Similarity=0.047  Sum_probs=63.2

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEE--ecC-ccccceeEEecCCCEEEEEeCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVL--HEG-FYFANGVALSKDENFVVVCESWK   79 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~-~~~pnGi~~~~dg~~Lyv~~~~~   79 (225)
                      ..+++.+||++.++-..                 .|.|..||..+++.+..  ..+ ...-+.|+|+|++++|. +-+.+
T Consensus        11 t~~~~s~dg~~la~~~~-----------------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~-s~s~D   72 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPN-----------------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTD   72 (371)
T ss_dssp             CEEEECTTSSEEEEECS-----------------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEETT
T ss_pred             EEEEECCCCCEEEEEeC-----------------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEE-EEECC
Confidence            35788899988877543                 56777777655654433  233 34458999999999554 44556


Q ss_pred             CEEEEEEecCCCCCceeEEe-ccCCCCCCceEECCCCCEEEEeec
Q 047259           80 FRCRRYWLKGPRQGRLESFI-EHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        80 ~~I~~~~~~~~~~~~~~~~~-~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +.|..+++++...  ...+. .........++++++|+..++...
T Consensus        73 ~~i~vWd~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~  115 (371)
T d1k8kc_          73 RNAYVWTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGSG  115 (371)
T ss_dssp             SCEEEEEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEeeccccc--ccccccccccccccccccccccccceeecc
Confidence            7888888864211  11111 112233567889999987766655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.66  E-value=0.00068  Score=57.57  Aligned_cols=72  Identities=10%  Similarity=0.110  Sum_probs=52.0

Q ss_pred             CeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--C------CCCCCceEECCC----C
Q 047259           48 EETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--L------PGGPDNINLAPD----G  115 (225)
Q Consensus        48 ~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~------~g~Pd~i~~d~~----G  115 (225)
                      =+++++++++..|-+|++.|||+ |||++...++|++++.+++   ..+.+...  .      .+..=+|+++++    +
T Consensus        17 f~~~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g---~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~   92 (450)
T d1crua_          17 FDKKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (450)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             cEEEEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCC---cEeecccCCccccccCCCCceeeEEeCCCCccCC
Confidence            35778889999999999999997 9999988899999987653   22222221  0      012236899874    7


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      .+|++...
T Consensus        93 ~iYvsyt~  100 (450)
T d1crua_          93 YIYISGTF  100 (450)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            79997653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=0.0013  Score=52.37  Aligned_cols=137  Identities=11%  Similarity=-0.003  Sum_probs=74.8

Q ss_pred             EEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc--CCCCCCceEECCC-C
Q 047259           40 LLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH--LPGGPDNINLAPD-G  115 (225)
Q Consensus        40 v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~--~~g~Pd~i~~d~~-G  115 (225)
                      +..++.++++......+ ...-+.++|+|++..++++...++.|..++....  .....+...  .......+++.++ |
T Consensus       141 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             EEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccc--ccceecccccCCCCccEEeeeccccc
Confidence            34444444543333333 3445789999999877777777888888886531  111111111  1223456888886 5


Q ss_pred             CEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEeC
Q 047259          116 SFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEFE  194 (225)
Q Consensus       116 ~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~~  194 (225)
                      .++++...                                    .+.|..+|. .++.+..+......+..........+
T Consensus       219 ~~l~s~~~------------------------------------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~d  262 (325)
T d1pgua1         219 EFVITVGS------------------------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD  262 (325)
T ss_dssp             CEEEEEET------------------------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESS
T ss_pred             eecccccc------------------------------------ccceeeeeeccccccccccccccccccceeeeeccC
Confidence            66666554                                    345666664 47777777643332111122222234


Q ss_pred             CEEEEeeCCCCeEEEEeCCC
Q 047259          195 DNLYMASIQSKFVGKLPLNT  214 (225)
Q Consensus       195 ~~Lyv~~~~~~~i~~~~~~~  214 (225)
                      ++++++......|...++..
T Consensus       263 g~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         263 SQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             SSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEECCC
Confidence            44445555666777776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=0.00098  Score=53.00  Aligned_cols=63  Identities=14%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ...+.++|+|+++.++++-+..+.|..++.+..   ...............++++++|+++++...
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceeeeccccccccccccccccc---ccccccccccccccccccCccccccccccc
Confidence            345789999999877888778889999987642   221111111223468899999998776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=0.0012  Score=51.22  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=51.1

Q ss_pred             CCcEEEEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCceeEEeccCCCCCCceEEC
Q 047259           36 PHGQLLKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      ..|.|..+|..+++...+  ...-.....++++|+++.|+.+ ...+.|..+++.... ......+. ........+++.
T Consensus       156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s  233 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWS  233 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-cccccccccccc
Confidence            356777777655554432  2233456889999999866544 556789999886421 11111111 011223568899


Q ss_pred             CCCCEEEEeec
Q 047259          113 PDGSFWVALIK  123 (225)
Q Consensus       113 ~~G~l~v~~~~  123 (225)
                      ++|.+.++...
T Consensus       234 ~~~~~l~sgs~  244 (299)
T d1nr0a2         234 PDNVRLATGSL  244 (299)
T ss_dssp             TTSSEEEEEET
T ss_pred             ccccceEEEcC
Confidence            99987776554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.46  E-value=0.00068  Score=53.82  Aligned_cols=101  Identities=17%  Similarity=0.123  Sum_probs=65.0

Q ss_pred             cEEEcCCCc-EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCC-EEEEEeCCCCE
Q 047259            4 DVIEASDGS-LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDEN-FVVVCESWKFR   81 (225)
Q Consensus         4 dv~~~~dG~-iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~-~Lyv~~~~~~~   81 (225)
                      .+++.++|. +|++.....        ..........|..+|..+++..........|.+++++|||+ .||++....+.
T Consensus       253 ~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~  324 (355)
T d2bbkh_         253 QVAYHRALDRIYLLVDQRD--------EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKT  324 (355)
T ss_dssp             CEEEETTTTEEEEEEEECC--------TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             EEEEeCCCCeEEEEeccCC--------ceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCE
Confidence            467777774 555533210        01112234678999988777655555556799999999997 47888888999


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      |+.|+.++.  .....+ ......|.-+++..+|
T Consensus       325 i~v~D~~tg--~~~~~i-~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         325 LYIHDAESG--EELRSV-NQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEETTTC--CEEEEE-CCCCSSCCEEECCCCC
T ss_pred             EEEEECCCC--CEEEEE-eCcCCCccEEEeCCCC
Confidence            999998642  112222 2234467777776654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=0.016  Score=45.66  Aligned_cols=135  Identities=13%  Similarity=0.035  Sum_probs=77.0

Q ss_pred             CcEEEEEeCCCCeEEEEecC----ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEEC
Q 047259           37 HGQLLKYDPELEETTVLHEG----FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLA  112 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~----~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d  112 (225)
                      .|.+..++..+.+.......    ......++|+||+..++++-...+.|..|++...  .....+.. ......++.+.
T Consensus       181 d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~--~~~~~l~~-~~~~v~~~~~s  257 (325)
T d1pgua1         181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIED-DQEPVQGGIFA  257 (325)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC--CEEEECCB-TTBCCCSCEEE
T ss_pred             ccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc--cccccccc-cccccccceee
Confidence            56777777655554443322    2345789999986667788778889999987642  11222221 11122344443


Q ss_pred             ---CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccc-e
Q 047259          113 ---PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISF-V  187 (225)
Q Consensus       113 ---~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~-~  187 (225)
                         ++|.++++...                                    .+.|...|. .|+.+..+...... ... .
T Consensus       258 ~~~~dg~~l~s~s~------------------------------------D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~  300 (325)
T d1pgua1         258 LSWLDSQKFATVGA------------------------------------DATIRVWDVTTSKCVQKWTLDKQQ-LGNQQ  300 (325)
T ss_dssp             EEESSSSEEEEEET------------------------------------TSEEEEEETTTTEEEEEEECCTTC-GGGCE
T ss_pred             eeccCCCEEEEEeC------------------------------------CCeEEEEECCCCCEEEEEEecCCc-ccCeE
Confidence               67877776654                                    345555665 48888877653222 221 2


Q ss_pred             eEEEEe-CCEEEEeeCCCCeEEEEeC
Q 047259          188 TSAVEF-EDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       188 t~~~~~-~~~Lyv~~~~~~~i~~~~~  212 (225)
                      ..+... ++.| ++...++.|.++++
T Consensus       301 ~~~~~~~~~~l-~s~s~dg~i~vwdl  325 (325)
T d1pgua1         301 VGVVATGNGRI-ISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEETTEE-EEEETTSCEEEEET
T ss_pred             EEEEECCCCEE-EEEECCCEEEEEEC
Confidence            223333 4554 55556688877764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.34  E-value=0.0014  Score=52.36  Aligned_cols=77  Identities=9%  Similarity=-0.000  Sum_probs=56.3

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCE-EEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENF-VVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~-Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ...+.+..+|..+++..........|.+++|+|||+. ||++....+.|..+|..++  .....+ ......|..+++..
T Consensus       295 ~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg--~~~~~~-~~~g~~P~~l~~~~  371 (373)
T d2madh_         295 AAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG--DQDQST-VELGSGPQVLSVMN  371 (373)
T ss_pred             cCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC--CEEEEE-CCCCCCCcEEEEec
Confidence            3456788999877776666666678999999999986 5788889999999998753  122222 22344688998876


Q ss_pred             C
Q 047259          114 D  114 (225)
Q Consensus       114 ~  114 (225)
                      +
T Consensus       372 ~  372 (373)
T d2madh_         372 E  372 (373)
T ss_pred             C
Confidence            5

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.34  E-value=0.0095  Score=45.97  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=79.0

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEecc-CCCCCCceEEC
Q 047259           35 KPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEH-LPGGPDNINLA  112 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~-~~g~Pd~i~~d  112 (225)
                      ...+.|..+|..+++......+ ....+.++++|+++.| ++-+..+.|..+++...  .....+... .......++++
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l-~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEEC
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeeccc--ccccccccccccCceEEEEEC
Confidence            3467888889877765554443 3456889999999855 55556788888887642  122222111 11223578899


Q ss_pred             CCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEE
Q 047259          113 PDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAV  191 (225)
Q Consensus       113 ~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~  191 (225)
                      ++|++.++...                                    .+.|..+|. .|+.+..+....+    .++.+.
T Consensus       280 ~~~~~l~~g~~------------------------------------dg~i~iwd~~~~~~~~~~~~H~~----~V~~l~  319 (340)
T d1tbga_         280 KSGRLLLAGYD------------------------------------DFNCNVWDALKADRAGVLAGHDN----RVSCLG  319 (340)
T ss_dssp             SSSCEEEEEET------------------------------------TSCEEEEETTTCCEEEEECCCSS----CEEEEE
T ss_pred             CCCCEEEEEEC------------------------------------CCEEEEEECCCCcEEEEEcCCCC----CEEEEE
Confidence            99998877655                                    345666665 4788777764333    355555


Q ss_pred             Ee-CCEEEEeeCCCCeEE
Q 047259          192 EF-EDNLYMASIQSKFVG  208 (225)
Q Consensus       192 ~~-~~~Lyv~~~~~~~i~  208 (225)
                      .. ++.+.++....+.|.
T Consensus       320 ~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         320 VTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             ECTTSSCEEEEETTSCEE
T ss_pred             EeCCCCEEEEEccCCEEE
Confidence            43 444444443445544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.24  E-value=0.001  Score=51.12  Aligned_cols=53  Identities=11%  Similarity=-0.024  Sum_probs=41.1

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEe-CC----CCEEEEEEecC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCE-SW----KFRCRRYWLKG   89 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~-~~----~~~I~~~~~~~   89 (225)
                      .|.||.+|.++++.+.+........+.+|||||++|+++. ..    ...|+.++..+
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            3589999998889888887777788999999999886543 22    13588888765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.034  Score=43.61  Aligned_cols=82  Identities=13%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             CcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCC
Q 047259           37 HGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDG  115 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G  115 (225)
                      .+.|..++..+++....... ......++++++++.++++ ...+.|..+++...  .....+  ...+....++++++|
T Consensus       162 d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~--~~~~~~--~~~~~i~~l~~~~~~  236 (337)
T d1gxra_         162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREG--RQLQQH--DFTSQIFSLGYCPTG  236 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTT--EEEEEE--ECSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccccccccccccc--eeeccc--ccccceEEEEEcccc
Confidence            55677777766665554433 3445789999999866655 45678988887642  111222  133445678889998


Q ss_pred             CEEEEeec
Q 047259          116 SFWVALIK  123 (225)
Q Consensus       116 ~l~v~~~~  123 (225)
                      ++.++...
T Consensus       237 ~~l~~~~~  244 (337)
T d1gxra_         237 EWLAVGME  244 (337)
T ss_dssp             SEEEEEET
T ss_pred             cccceecc
Confidence            87766544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.026  Score=42.47  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCE
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFR   81 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~   81 (225)
                      +.|++.|+|++.+|-+.                 .|.|..+|..+++......+ ......+++++++..+... .....
T Consensus        21 ~~l~~sp~~~~l~s~s~-----------------Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~-~~~~~   82 (317)
T d1vyhc1          21 TRVIFHPVFSVMVSASE-----------------DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-SADMT   82 (317)
T ss_dssp             EEEEECSSSSEEEEEES-----------------SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE-ETTSC
T ss_pred             EEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccc-ccccc
Confidence            46788888888887543                 57777888776665544443 3455789999999855444 44455


Q ss_pred             EEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           82 CRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        82 I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +..++....   ...............+.+.++++..++...
T Consensus        83 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (317)
T d1vyhc1          83 IKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASR  121 (317)
T ss_dssp             CCEEETTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             ccccccccc---ccccccccccccceeeeccCCCceEEeecc
Confidence            555554321   111111112223456777788877666544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.98  E-value=0.018  Score=44.02  Aligned_cols=102  Identities=14%  Similarity=0.238  Sum_probs=65.2

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-C-ccccceeEEecCCCEEEEEeCCCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-G-FYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~-~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      +.|++.|||++.+|-+.                 .|.|..+|..+++...... . ...-..++++|+|+ ++++. ..+
T Consensus        16 ~~l~~s~dg~~l~s~s~-----------------Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~-~d~   76 (299)
T d1nr0a2          16 TALSSSADGKTLFSADA-----------------EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS-WDD   76 (299)
T ss_dssp             EEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE-TTT
T ss_pred             EEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eeccc-cee
Confidence            35788899988877443                 5778888887776555442 2 23457899999987 55544 457


Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .|..++..+................+..+++.++|++.++...
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~  119 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY  119 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred             eEEEeccCCcccccccccccccccccccccccccccccccccc
Confidence            8887876542222211112123445678899999987766554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.86  E-value=0.024  Score=45.33  Aligned_cols=83  Identities=7%  Similarity=-0.113  Sum_probs=45.7

Q ss_pred             CcEEEEEeCCCCeEEEEe--c-CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec---cCCCCCCceE
Q 047259           37 HGQLLKYDPELEETTVLH--E-GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE---HLPGGPDNIN  110 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~--~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~---~~~g~Pd~i~  110 (225)
                      .+.|..+|..++..+...  . .......++|+|+++.|+++. ..+.|..++++..  ........   ........++
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~v~~v~  148 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQE--NDWWVCKHIKKPIRSTVLSLD  148 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETT--TTEEEEEEECTTCCSCEEEEE
T ss_pred             CCeEEEEeecccccccccccccccccccccccccccccceeec-ccCcceeeeeecc--ccccccccccccccccccccc
Confidence            455655665445544332  2 234568899999999666554 4566666655432  11111111   1122334678


Q ss_pred             ECCCCCEEEEee
Q 047259          111 LAPDGSFWVALI  122 (225)
Q Consensus       111 ~d~~G~l~v~~~  122 (225)
                      ++++|.++++..
T Consensus       149 ~~p~~~~l~s~s  160 (371)
T d1k8kc_         149 WHPNSVLLAAGS  160 (371)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ccccccceeccc
Confidence            888888776553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.089  Score=41.31  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             cceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           60 ANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        60 pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      -..|+|+||+++|+ +-+..+.|..++....   ...............+++.+++...++...
T Consensus       124 V~~l~~s~~~~~l~-s~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         124 IRSVCFSPDGKFLA-TGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             EEEEEECTTSSEEE-EEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCcce-eccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            46799999998554 4455678888876532   211111111222345677777765555443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.1  Score=38.90  Aligned_cols=96  Identities=11%  Similarity=0.060  Sum_probs=55.1

Q ss_pred             EEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhh
Q 047259           72 VVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINL  151 (225)
Q Consensus        72 Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  151 (225)
                      ++++.+..+.|..+++...  .....+. ........+++.++|++.++...                            
T Consensus       219 ~~~~~~~d~~i~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~----------------------------  267 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVSTG--MCLMTLV-GHDNWVRGVLFHSGGKFILSCAD----------------------------  267 (317)
T ss_dssp             EEEEEETTSEEEEEETTTT--EEEEEEE-CCSSCEEEEEECSSSSCEEEEET----------------------------
T ss_pred             eeEeccCCCEEEEEECCCC--cEEEEEe-CCCCCEEEEEECCCCCEEEEEEC----------------------------
Confidence            4455556678888877542  1112222 12233457899999987776655                            


Q ss_pred             hccCCCCcceEEEEECC-CCcEEEEEECCCCCcccceeEEEEe-CCEEEEeeCCCCeEEEE
Q 047259          152 LIPLGNDAGARIVKVDT-HGKIIMDFNDPNATYISFVTSAVEF-EDNLYMASIQSKFVGKL  210 (225)
Q Consensus       152 ~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~g~~~~~~t~~~~~-~~~Lyv~~~~~~~i~~~  210 (225)
                              .+.|..+|. +++.+..+....+    .++.+... ++.+.++....+.|...
T Consensus       268 --------dg~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         268 --------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             --------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             --------CCeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence                    456777775 4788888865333    35555553 44444454455566543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.14  Score=40.08  Aligned_cols=136  Identities=12%  Similarity=0.031  Sum_probs=75.9

Q ss_pred             CCcEEEEEeCCCCeEEEEec--------CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCC-CCc--------eeEE
Q 047259           36 PHGQLLKYDPELEETTVLHE--------GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPR-QGR--------LESF   98 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~--------~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~-~~~--------~~~~   98 (225)
                      ..|.|..++..++.......        .......++++|+++.| ++-+..+.|..+++.... ...        ....
T Consensus       225 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE-EEEETTSEEEEEEC---------------CEEEE
T ss_pred             CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE-EEEECCCcEEEEeccCCccccccccccccceeee
Confidence            35667777776554333221        11234689999999855 455566788888875320 000        0000


Q ss_pred             eccCCCCCCceEECCCCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEE
Q 047259           99 IEHLPGGPDNINLAPDGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFN  177 (225)
Q Consensus        99 ~~~~~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~  177 (225)
                      ..........+++.++|++.++...                                    .+.|..+|. .|+.+..+.
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~------------------------------------dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSK------------------------------------DRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEET------------------------------------TSEEEEEETTTCCEEEEEE
T ss_pred             cccccceEEEEEECCCCCEEEEEeC------------------------------------CCEEEEEECCCCcEEEEEe
Confidence            0001123456888888887766544                                    456666775 488888887


Q ss_pred             CCCCCcccceeEEEE-------eCCEEEEeeCCCCeEEEEeC
Q 047259          178 DPNATYISFVTSAVE-------FEDNLYMASIQSKFVGKLPL  212 (225)
Q Consensus       178 ~p~g~~~~~~t~~~~-------~~~~Lyv~~~~~~~i~~~~~  212 (225)
                      ...+.    ++.+..       .++.++++....+.|.+.++
T Consensus       348 ~H~~~----V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         348 GHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCCC----EEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            54443    333332       15677777666666665554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.096  Score=41.90  Aligned_cols=102  Identities=12%  Similarity=-0.022  Sum_probs=57.6

Q ss_pred             CCcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEec-------CccccceeEEecCCCEEEE
Q 047259            2 TNDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHE-------GFYFANGVALSKDENFVVV   74 (225)
Q Consensus         2 pndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-------~~~~pnGi~~~~dg~~Lyv   74 (225)
                      .+.+++.++| +.+|-+.                 +|.|..||..+++......       .....+.|+|+|||++|..
T Consensus       187 ~~~v~~s~dg-~lasgs~-----------------Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  248 (393)
T d1sq9a_         187 ATSVDISERG-LIATGFN-----------------NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  248 (393)
T ss_dssp             CCEEEECTTS-EEEEECT-----------------TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             EEEEEECCCC-EEEEEeC-----------------CCcEEEEeecccccccccccccccccccceEEEcccccccceeee
Confidence            4567777777 3344332                 6788888887665433221       2234578999999996655


Q ss_pred             EeCCC--CEEEEEEecCCCCCceeEEecc---------C---CCCCCceEECCCCCEEEEeec
Q 047259           75 CESWK--FRCRRYWLKGPRQGRLESFIEH---------L---PGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        75 ~~~~~--~~I~~~~~~~~~~~~~~~~~~~---------~---~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      +....  +.|..++++.+  .....+...         .   .+.-..+++.++|++.++...
T Consensus       249 gs~D~t~~~i~lwd~~~g--~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             EEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ecCCCCcceeeecccccc--eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            43221  24555666532  111111100         0   011245899999998877655

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.24  E-value=0.088  Score=42.71  Aligned_cols=139  Identities=11%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             EEEEEeCCCCeEEEEe-------cCccccceeEE--ecCCCEEE-EEeCCCCEEEEEEecC--C-CCCc--eeEEeccCC
Q 047259           39 QLLKYDPELEETTVLH-------EGFYFANGVAL--SKDENFVV-VCESWKFRCRRYWLKG--P-RQGR--LESFIEHLP  103 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~-------~~~~~pnGi~~--~~dg~~Ly-v~~~~~~~I~~~~~~~--~-~~~~--~~~~~~~~~  103 (225)
                      .+|.+++..+.+..+.       ..+..+.|+|+  +++.+.+| ++....+++.+|.+..  . ....  .+.|  ..+
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~  179 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMN  179 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECS
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCC
Confidence            4677776655554432       23345889999  55544343 3334567888777642  1 1111  1222  255


Q ss_pred             CCCCceEECCC-CCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC--C-CcEEEEEECC
Q 047259          104 GGPDNINLAPD-GSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT--H-GKIIMDFNDP  179 (225)
Q Consensus       104 g~Pd~i~~d~~-G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~--~-G~~~~~~~~p  179 (225)
                      ..+.||++|.+ +.||+++-..                                     .|++++.  + +.....+..-
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~-------------------------------------Giw~~~a~~~~~~~~~~i~~~  222 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDE-------------------------------------AIWKFSAEPDGGSNGTVIDRA  222 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTT-------------------------------------EEEEEESSTTSCSCCEEEEEC
T ss_pred             CccceEEEeCCCCcEEEecCcc-------------------------------------ceEEEEeccCCCccceeeecc
Confidence            67899999986 7899997552                                     3555543  2 2222222111


Q ss_pred             CC-CcccceeEEEE-----eCCEEEEeeCCCCeEEEEeCCCcc
Q 047259          180 NA-TYISFVTSAVE-----FEDNLYMASIQSKFVGKLPLNTPE  216 (225)
Q Consensus       180 ~g-~~~~~~t~~~~-----~~~~Lyv~~~~~~~i~~~~~~~~~  216 (225)
                      .| .....+-+++.     .+|.|.+++.+.+...+|++.+..
T Consensus       223 ~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         223 DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            12 22233333331     257999999999999999987653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.22  E-value=0.039  Score=42.23  Aligned_cols=83  Identities=11%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             CcEEEEEeCCCCeEEEEecC---ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           37 HGQLLKYDPELEETTVLHEG---FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~---~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      .|.|..++............   ......++++|+++.| ++-+..+.|..|++...  .....+.. ..+.-..+++.+
T Consensus       247 d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~g~~dg~i~iwd~~~~--~~~~~~~~-H~~~V~~l~~s~  322 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYDDFNCNVWDALKA--DRAGVLAG-HDNRVSCLGVTD  322 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE-EEEETTSCEEEEETTTC--CEEEEECC-CSSCEEEEEECT
T ss_pred             CCeEEEEeecccccccccccccccCceEEEEECCCCCEE-EEEECCCEEEEEECCCC--cEEEEEcC-CCCCEEEEEEeC
Confidence            56777777765544333322   2334689999999855 45556688999987642  12222321 123346788999


Q ss_pred             CCCEEEEeec
Q 047259          114 DGSFWVALIK  123 (225)
Q Consensus       114 ~G~l~v~~~~  123 (225)
                      +|.+.++...
T Consensus       323 d~~~l~s~s~  332 (340)
T d1tbga_         323 DGMAVATGSW  332 (340)
T ss_dssp             TSSCEEEEET
T ss_pred             CCCEEEEEcc
Confidence            9987666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.88  E-value=0.059  Score=44.97  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=84.1

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--------------CEEEEEEec--------CC--CC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK--------------FRCRRYWLK--------GP--RQ   92 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~--------------~~I~~~~~~--------~~--~~   92 (225)
                      .+.+..+|.++.++..-..-...|.++.+++||+++|++..++              ..|..+++.        ++  ..
T Consensus       172 ~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         172 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            4556788988776654443445788999999999999987542              234444431        10  00


Q ss_pred             Cc-------------eeEEeccCCCCCCceEECCCCCEEEEeecCC--chhhhhhhcChhHHHHHHhhhhhhhhhccCCC
Q 047259           93 GR-------------LESFIEHLPGGPDNINLAPDGSFWVALIKMN--QTGVRAIQSCPDKWKLLQAYPELINLLIPLGN  157 (225)
Q Consensus        93 ~~-------------~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~~~--~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~  157 (225)
                      ..             ...++. .+..|-|+.+++||+..++.....  .+++++    ..+...+..             
T Consensus       252 ngV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~----~Ki~~~~~~-------------  313 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV----TRFDAVFYE-------------  313 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEG----GGHHHHHHS-------------
T ss_pred             CCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEe----hhhhhhhcc-------------
Confidence            11             111111 234699999999999766666532  222222    111111110             


Q ss_pred             CcceEEEEECCCCcEEEEEECCCCCcccceeEEEEeCCEEEEeeCCCCeEEEEeCCCccc
Q 047259          158 DAGARIVKVDTHGKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQSKFVGKLPLNTPEA  217 (225)
Q Consensus       158 ~~~~~V~~~d~~G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~~~~i~~~~~~~~~~  217 (225)
                             +.++...+....+.  |  ++..-+..+..|..|.+-+-...|.+-++.+..+
T Consensus       314 -------~~~~~~~~~~e~el--g--lgPLht~fd~~g~aytslfids~v~kw~~~~~~~  362 (459)
T d1fwxa2         314 -------NADPRSAVVAEPEL--G--LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR  362 (459)
T ss_dssp             -------CC-GGGGEEECCBC--C--SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH
T ss_pred             -------cCCccccEEeeccc--C--cCccccccCCCceEEEEeeccceEEEEecchhhh
Confidence                   01233333222222  2  2222223334689999999999999988866544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.77  E-value=0.24  Score=36.85  Aligned_cols=42  Identities=17%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CcEEEEEeCCCCeEEEEecC-------ccccceeEEecCCCEEEEEeCC
Q 047259           37 HGQLLKYDPELEETTVLHEG-------FYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~-------~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      .+.||.++..+++.+.+...       ......++|+|||+.|+++...
T Consensus        67 ~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  115 (281)
T d1k32a2          67 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM  115 (281)
T ss_dssp             EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred             ceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEcc
Confidence            45688888887777665322       2345678999999999887653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.74  E-value=0.33  Score=41.41  Aligned_cols=60  Identities=12%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeC---------------------CCCeEEEEeCCCccc
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASI---------------------QSKFVGKLPLNTPEA  217 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~---------------------~~~~i~~~~~~~~~~  217 (225)
                      .+.+..+|.+ |+++-.+..+.+. ...+... ..+|+-||+-.                     ..++|.+|.|+++.+
T Consensus       478 dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty-~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~  555 (560)
T d1kv9a2         478 AGQMHAYSADKGEALWQFEAQSGI-VAAPMTF-ELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQ  555 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCC
T ss_pred             CCcEEEEECCCCcEeEEEECCCCc-cccCEEE-EECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCC
Confidence            5678889986 9999999987654 3334333 35788787632                     236899999998776


Q ss_pred             ccCC
Q 047259          218 ELAP  221 (225)
Q Consensus       218 ~~~~  221 (225)
                      .-+|
T Consensus       556 ~~~~  559 (560)
T d1kv9a2         556 LPPP  559 (560)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.55  E-value=0.22  Score=40.68  Aligned_cols=86  Identities=6%  Similarity=0.091  Sum_probs=53.0

Q ss_pred             CCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC------CEEEEEEecCCCCCceeEEeccCCCC---
Q 047259           35 KPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK------FRCRRYWLKGPRQGRLESFIEHLPGG---  105 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~------~~I~~~~~~~~~~~~~~~~~~~~~g~---  105 (225)
                      .+..+||.++.+.+....+..+.....++ ++.|++.+|++....      ..|+++++++.  +..+.+...+.+.   
T Consensus       341 dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~--~~~~~lt~~~~~~~~~  417 (470)
T d2bgra1         341 EGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY--TKVTCLSCELNPERCQ  417 (470)
T ss_dssp             TSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT--TCEEESSTTTSTTTBC
T ss_pred             CcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC--CceeEecccccCCCCC
Confidence            44668999998766666665555455565 566677888775432      25999998763  2222222112111   


Q ss_pred             CCceEECCCCCEEEEeec
Q 047259          106 PDNINLAPDGSFWVALIK  123 (225)
Q Consensus       106 Pd~i~~d~~G~l~v~~~~  123 (225)
                      -...++.+||+.++....
T Consensus       418 ~~s~~fSpdgky~~~~~s  435 (470)
T d2bgra1         418 YYSVSFSKEAKYYQLRCS  435 (470)
T ss_dssp             BEEEEECTTSSEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEec
Confidence            135789999998776655

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.92  E-value=0.87  Score=38.74  Aligned_cols=56  Identities=9%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeCC-----------------CCeEEEEeCCCccc
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASIQ-----------------SKFVGKLPLNTPEA  217 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~~-----------------~~~i~~~~~~~~~~  217 (225)
                      .+.+..+|.+ |+++-.+..+.+- ...+... ..+|+.||+-..                 .+.|.+|.|+++.+
T Consensus       497 dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty-~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         497 DGRLVAYHAATGEKLWEAPTGTGV-VAAPSTY-MVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             CCeEEEEECCCCcEeEEEECCCCc-cccCEEE-EECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            5678889975 9999999987654 3334322 358888875422                 24799999988654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.91  E-value=0.073  Score=43.77  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=37.9

Q ss_pred             cEEEEEeCCCCeEEEEecCc------cccceeEEecCCCEEEEEe--------CCCCEEEEEEecCC
Q 047259           38 GQLLKYDPELEETTVLHEGF------YFANGVALSKDENFVVVCE--------SWKFRCRRYWLKGP   90 (225)
Q Consensus        38 g~v~~~d~~~~~~~~~~~~~------~~pnGi~~~~dg~~Lyv~~--------~~~~~I~~~~~~~~   90 (225)
                      +.++.+|..+++.+.+.+..      .....+.|||||+.|.++.        +..+.++.++++++
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC
Confidence            46899999888877766543      2357889999999876553        23457778888753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.64  Score=34.35  Aligned_cols=44  Identities=11%  Similarity=-0.111  Sum_probs=33.5

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCC
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKF   80 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~   80 (225)
                      ...++.++..++..+.+...........++|||+.+++.....+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          62 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             SCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC
Confidence            45678888877777777777778888999999998866554443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.72  Score=34.36  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=73.4

Q ss_pred             CCCcEEEEEeCCCCeEEEEecC-ccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECC
Q 047259           35 KPHGQLLKYDPELEETTVLHEG-FYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAP  113 (225)
Q Consensus        35 ~~~g~v~~~d~~~~~~~~~~~~-~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~  113 (225)
                      ...|.|..+|..+++....... ...-..+.++  ++ ++++-+..+.|..++....  .....+.......-.-.++..
T Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~  268 (342)
T d2ovrb2         194 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQF  268 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEE
T ss_pred             eCCCeEEEeecccceeeeEecccccceeEEecC--CC-EEEEEcCCCEEEEEecccc--cccccccccceeeeceeeccc
Confidence            3467788888766654433322 2233445554  55 5566667789999987642  122222211111112234444


Q ss_pred             CCCEEEEeecCCchhhhhhhcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECC-CCcEEEEEECCC-CCcccceeEEE
Q 047259          114 DGSFWVALIKMNQTGVRAIQSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDT-HGKIIMDFNDPN-ATYISFVTSAV  191 (225)
Q Consensus       114 ~G~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~-~G~~~~~~~~p~-g~~~~~~t~~~  191 (225)
                      +++++++...                                    .+.|...|. .|+.+..+.... +..-..++.+.
T Consensus       269 ~~~~~~s~s~------------------------------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         269 NKNFVITSSD------------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             CSSEEEEEET------------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             CCCeeEEEcC------------------------------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            5677666655                                    456777775 488877775322 11122355555


Q ss_pred             EeC-CEEEEeeCCC----CeEEEEeCCCc
Q 047259          192 EFE-DNLYMASIQS----KFVGKLPLNTP  215 (225)
Q Consensus       192 ~~~-~~Lyv~~~~~----~~i~~~~~~~~  215 (225)
                      ... +.+..+....    .+|.+.+++.+
T Consensus       313 ~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         313 ASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             ECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             ECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            544 4444443332    36888887754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.82  Score=33.70  Aligned_cols=80  Identities=16%  Similarity=0.018  Sum_probs=49.8

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCC--CEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCC
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWK--FRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGS  116 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~--~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~  116 (225)
                      +||..|.+.+..+.+.++...-...+|||||+.|.++....  ..++.++..+.   ..+.+. ...+......++++|.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVA-SFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEEEE-CCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---ceeEEe-eeecccccceecCCCC
Confidence            68998987556666654444445679999999885554333  35666666542   233333 2344456778888887


Q ss_pred             EEEEee
Q 047259          117 FWVALI  122 (225)
Q Consensus       117 l~v~~~  122 (225)
                      .++...
T Consensus        96 ~i~~~~  101 (269)
T d2hqsa1          96 KLAFAL  101 (269)
T ss_dssp             EEEEEE
T ss_pred             eeeEee
Confidence            655443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.56  E-value=1  Score=33.66  Aligned_cols=80  Identities=14%  Similarity=0.021  Sum_probs=44.2

Q ss_pred             CCcEEEEEeCCCCeEEEEecCc-cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCC
Q 047259           36 PHGQLLKYDPELEETTVLHEGF-YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPD  114 (225)
Q Consensus        36 ~~g~v~~~d~~~~~~~~~~~~~-~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~  114 (225)
                      ..|.|..+|..++.......+. ...+.+++++  + .+++-..++.|..+++...    ...+..+......-.++.++
T Consensus       221 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~  293 (355)
T d1nexb2         221 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDY----SRKFSYHHTNLSAITTFYVS  293 (355)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTC----CEEEEEECTTCCCCCEEEEC
T ss_pred             ccceEEeeecccccccccccccccccccccccc--c-eeeeeeccccccccccccc----ceecccccCCceEEEEEcCC
Confidence            3566777787666654444432 3346677764  4 4556667789999987642    22232222221122345566


Q ss_pred             CCEEEEee
Q 047259          115 GSFWVALI  122 (225)
Q Consensus       115 G~l~v~~~  122 (225)
                      +++.++..
T Consensus       294 ~~~l~~g~  301 (355)
T d1nexb2         294 DNILVSGS  301 (355)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            77776653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.37  E-value=1.4  Score=35.20  Aligned_cols=67  Identities=9%  Similarity=0.008  Sum_probs=41.9

Q ss_pred             CccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec----cCCCCCCceEEC----CCCCEEEEeec
Q 047259           56 GFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE----HLPGGPDNINLA----PDGSFWVALIK  123 (225)
Q Consensus        56 ~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~----~~~g~Pd~i~~d----~~G~l~v~~~~  123 (225)
                      ....+.|++++++.+.|||++.. ..||+|+.+............    .+.+-|.||++=    .+|.|.++..+
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG  252 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG  252 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             CCCccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence            34568999999999999999986 479999986321122222211    133457788743    23445555554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.88  Score=37.59  Aligned_cols=59  Identities=8%  Similarity=-0.029  Sum_probs=37.6

Q ss_pred             eEEecCCCEEEEEeCC----CCEEEEEEecCCCCCceeEEeccCC--CCCCceEECCCCCEEEEeec
Q 047259           63 VALSKDENFVVVCESW----KFRCRRYWLKGPRQGRLESFIEHLP--GGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        63 i~~~~dg~~Lyv~~~~----~~~I~~~~~~~~~~~~~~~~~~~~~--g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      ++++++++.+|++.+.    ...|+++++++...  .+.+...+.  ..--...++++|..+|-...
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            4699999999988653    44699998876321  111111111  11247789999998886665

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=2  Score=33.61  Aligned_cols=120  Identities=18%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             cccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEec--cC---CCCCCceEECCCCCEEEEeecCCchhhhhh
Q 047259           58 YFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIE--HL---PGGPDNINLAPDGSFWVALIKMNQTGVRAI  132 (225)
Q Consensus        58 ~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~--~~---~g~Pd~i~~d~~G~l~v~~~~~~~~~~~~~  132 (225)
                      .+.+.++++||+  ++++-+.++.|..+++...  .....+..  .+   ......+++.++|++.++....+.      
T Consensus       185 ~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~--~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t------  254 (393)
T d1sq9a_         185 QFATSVDISERG--LIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS------  254 (393)
T ss_dssp             CCCCEEEECTTS--EEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT------
T ss_pred             CcEEEEEECCCC--EEEEEeCCCcEEEEeeccc--ccccccccccccccccceEEEcccccccceeeeecCCCC------
Confidence            346789999997  4466777889999998642  11111111  11   122357889999998887765210      


Q ss_pred             hcChhHHHHHHhhhhhhhhhccCCCCcceEEEEECCC-CcEEEEEECCC----------CCcccceeEEEEe-CCEEEEe
Q 047259          133 QSCPDKWKLLQAYPELINLLIPLGNDAGARIVKVDTH-GKIIMDFNDPN----------ATYISFVTSAVEF-EDNLYMA  200 (225)
Q Consensus       133 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~V~~~d~~-G~~~~~~~~p~----------g~~~~~~t~~~~~-~~~Lyv~  200 (225)
                                                 .+.|...|.+ |+.+..+..+.          |. -..++.++.. ++++.++
T Consensus       255 ---------------------------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         255 ---------------------------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             ---------------------------EEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEE
T ss_pred             ---------------------------cceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEE
Confidence                                       2334445543 66666654211          11 1235555553 5666666


Q ss_pred             eCCCCeEEEEeCCCc
Q 047259          201 SIQSKFVGKLPLNTP  215 (225)
Q Consensus       201 ~~~~~~i~~~~~~~~  215 (225)
                      .-....|.+.++.+.
T Consensus       307 ~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTK  321 (393)
T ss_dssp             EETTSEEEEEETTTT
T ss_pred             ECCCCEEEEEECCCC
Confidence            666677777776543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=1.5  Score=32.23  Aligned_cols=81  Identities=17%  Similarity=0.087  Sum_probs=45.1

Q ss_pred             EEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEE
Q 047259           39 QLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFW  118 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~  118 (225)
                      .+..++..+++.......  .....+++++++.+.++....+.|..+++...  .....+.....+....++++++|.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l  177 (287)
T d1pgua2         102 DLLILQSFTGDIIKSVRL--NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL--EVSFDLKTPLRAKPSYISISPSETYI  177 (287)
T ss_dssp             EEEEEETTTCCEEEEEEC--SSCEEEEEECSSEEEEEETTTSCEEEEETTEE--EEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred             cceeeeccceeeeeeccc--cceeeeeeccCcceeeeccccceeeeeecccc--ceeeeeeeccCCceeEEEeccCcccc
Confidence            455566554544333221  23456778888878887776667777776431  11111111122335678999999866


Q ss_pred             EEeec
Q 047259          119 VALIK  123 (225)
Q Consensus       119 v~~~~  123 (225)
                      ++...
T Consensus       178 ~~g~~  182 (287)
T d1pgua2         178 AAGDV  182 (287)
T ss_dssp             EEEET
T ss_pred             ccccc
Confidence            66544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.92  E-value=1.7  Score=32.01  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEE--EEEeCCCCeEEEE--ecCccccceeEEecCCCEEEEEeCC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQL--LKYDPELEETTVL--HEGFYFANGVALSKDENFVVVCESW   78 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~~--~~~~~~pnGi~~~~dg~~Lyv~~~~   78 (225)
                      ++|++.|+|++.+|-+.                 .|.|  |-++......+..  .........++|++++..++++-..
T Consensus        15 ~~l~fsp~~~~L~s~s~-----------------Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSW-----------------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEEEEEGGGTEEEEEET-----------------TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             EEEEEeCCCCEEEEEEC-----------------CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            47889999987777543                 4444  4444432222222  2233345789999987767777777


Q ss_pred             CCEEEEEEecC
Q 047259           79 KFRCRRYWLKG   89 (225)
Q Consensus        79 ~~~I~~~~~~~   89 (225)
                      .+.|..+++..
T Consensus        78 d~~v~~w~~~~   88 (342)
T d1yfqa_          78 QGEILKVDLIG   88 (342)
T ss_dssp             TSCEEEECSSS
T ss_pred             ccceeeeeccc
Confidence            78888888764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.55  E-value=0.22  Score=37.37  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=39.4

Q ss_pred             CcEEEcCCCcEEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC
Q 047259            3 NDVIEASDGSLYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES   77 (225)
Q Consensus         3 ndv~~~~dG~iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~   77 (225)
                      +.|++.|+|++++|-..                 .|.|..||.++++............-++++++++.|.++.+
T Consensus       255 ~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         255 NSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             EEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEE
T ss_pred             eeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEc
Confidence            46778888877776544                 68899999887764433333333446889999997766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.45  E-value=4.5  Score=34.30  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEee------------------------------------C
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMAS------------------------------------I  202 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~------------------------------------~  202 (225)
                      .+.+..+|.+ |+++-.+..+.+- ...+.+.. .+|+=||+-                                    .
T Consensus       493 Dg~l~A~Da~TGe~LW~~~~~~~~-~a~P~tY~-~dGkQYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (596)
T d1w6sa_         493 DGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYT-HKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQ  570 (596)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEEE-ETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHTTTGGGTCC
T ss_pred             CCeEEEEECCCCcEeeEEECCCCc-ccCCeEEE-ECCEEEEEEEecCCccccccccccccCccccccccccccccccccC
Confidence            5788889986 9999999987664 33343332 478877762                                    1


Q ss_pred             CCCeEEEEeCCCcccccCCC
Q 047259          203 QSKFVGKLPLNTPEAELAPK  222 (225)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~  222 (225)
                      .+++|++|.|+++.+...|.
T Consensus       571 ~g~~l~vf~l~g~~~~~~~~  590 (596)
T d1w6sa_         571 MGGGVVVFSLDGKGPYDDPN  590 (596)
T ss_dssp             CCCEEEEEEETTCCTTSSTT
T ss_pred             CCCEEEEEEeCCCCCCCCCC
Confidence            24789999999977655553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.10  E-value=1.2  Score=32.82  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             CcEEEEEeCCCCeEEEE-e-cCccccceeEEecCCC---------EEEEEeCCCCEEEEEEecCCCCCceeEEeccCCCC
Q 047259           37 HGQLLKYDPELEETTVL-H-EGFYFANGVALSKDEN---------FVVVCESWKFRCRRYWLKGPRQGRLESFIEHLPGG  105 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~-~-~~~~~pnGi~~~~dg~---------~Lyv~~~~~~~I~~~~~~~~~~~~~~~~~~~~~g~  105 (225)
                      .|.|..||..+++.... . ......+.++|+|++.         .++++-+..+.|+.++++.. ......+ ....+.
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-~~~~~~~-~~h~~~  260 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKAL-NAHKDG  260 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEET-TSSTTC
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-CeEEEEe-CCCCCC
Confidence            56788888766654332 1 1123346677776542         25566677788888887532 1111111 112233


Q ss_pred             CCceEECCCCCEEEEe
Q 047259          106 PDNINLAPDGSFWVAL  121 (225)
Q Consensus       106 Pd~i~~d~~G~l~v~~  121 (225)
                      ...+++.+++.|..+.
T Consensus       261 V~~v~~~~~~~l~s~g  276 (287)
T d1pgua2         261 VNNLLWETPSTLVSSG  276 (287)
T ss_dssp             EEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCEEEEEE
Confidence            4677878877655444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=2.4  Score=34.81  Aligned_cols=73  Identities=8%  Similarity=-0.059  Sum_probs=43.6

Q ss_pred             cEEEcCCCc--EEEEcCCCCCCcchhhhhcccCCCCcEEEEEeCCCCeEEEEecCcccc---ceeEEecCCCEE-EEEeC
Q 047259            4 DVIEASDGS--LYFTVSSKKYTPAEYYKDLVEGKPHGQLLKYDPELEETTVLHEGFYFA---NGVALSKDENFV-VVCES   77 (225)
Q Consensus         4 dv~~~~dG~--iy~td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p---nGi~~~~dg~~L-yv~~~   77 (225)
                      +..+.|||+  ++.+|....+          .+...|..+.+|..+++.+.+......+   .-..|||||+.| ||.  
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~----------r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--  132 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIY----------QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--  132 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCS----------SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--
T ss_pred             eeEECCCCCeEEEEEccccee----------EeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--
Confidence            456788886  4444433111          1234688999998878776664322222   237899999877 444  


Q ss_pred             CCCEEEEEEecC
Q 047259           78 WKFRCRRYWLKG   89 (225)
Q Consensus        78 ~~~~I~~~~~~~   89 (225)
                       .+.|+..+..+
T Consensus       133 -~~nl~~~~~~~  143 (465)
T d1xfda1         133 -ENNIYYCAHVG  143 (465)
T ss_dssp             -TTEEEEESSSS
T ss_pred             -cceEEEEecCC
Confidence             34677666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.44  E-value=6.3  Score=33.13  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEee
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMAS  201 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~  201 (225)
                      .+.+..+|.+ |+++-.+..+.+. ...+.+. ..+|+.||+-
T Consensus       484 dg~l~A~Da~tGe~lW~~~l~~~~-~a~P~ty-~~dGkqYi~v  524 (571)
T d2ad6a1         484 DGYLKALDNKDGKELWNFKMPSGG-IGSPMTY-SFKGKQYIGS  524 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCCc-eecceEE-EECCEEEEEE
Confidence            5678889986 9999999887654 3333322 3489999854

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.87  E-value=6.8  Score=32.90  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=36.9

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCcccceeEEEEeCCEEEEeeC----------------------CCCeEEEEeCCC
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYISFVTSAVEFEDNLYMASI----------------------QSKFVGKLPLNT  214 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~~~t~~~~~~~~Lyv~~~----------------------~~~~i~~~~~~~  214 (225)
                      .+.+..+|.+ |+++-.+..|.+. ...+... ..+|+-||+-.                      .++.|.+|.|+.
T Consensus       506 dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty-~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp~  581 (582)
T d1flga_         506 DGYFKAFDAKSGKELWKFQTGSGI-VSPPITW-EQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPS  581 (582)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCCEEE-EETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCC
T ss_pred             CCeEEEEECCCCcEeEEEECCCCc-cccCEEE-EECCEEEEEEEeCCCCccccccccccccccccCCCCEEEEEeCCC
Confidence            4678889986 9999999987654 3333322 36888887632                      356888888864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.31  E-value=2.4  Score=32.84  Aligned_cols=80  Identities=13%  Similarity=0.069  Sum_probs=48.8

Q ss_pred             EEEEEeCCCCeEEEEe----cCccccceeEEecCCCEEEEEe-CCCCEEEEEEecCCCCCceeEEeccCCC--CCCceEE
Q 047259           39 QLLKYDPELEETTVLH----EGFYFANGVALSKDENFVVVCE-SWKFRCRRYWLKGPRQGRLESFIEHLPG--GPDNINL  111 (225)
Q Consensus        39 ~v~~~d~~~~~~~~~~----~~~~~pnGi~~~~dg~~Lyv~~-~~~~~I~~~~~~~~~~~~~~~~~~~~~g--~Pd~i~~  111 (225)
                      .+..||+.+++++...    ....+..+.++.+||+ +|+.- ...+.+.+|++...   ...... ..+.  .--..++
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~---~w~~~~-~~~~~r~~~~~~~  127 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD---SWIPGP-DMQVARGYQSSAT  127 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT---EEEECC-CCSSCCSSCEEEE
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccC---cccccc-cccccccccceee
Confidence            5778999888775432    2234567889999998 55543 45578999998742   222221 1111  1124566


Q ss_pred             CCCCCEEEEeec
Q 047259          112 APDGSFWVALIK  123 (225)
Q Consensus       112 d~~G~l~v~~~~  123 (225)
                      -.+|++|+....
T Consensus       128 ~~dG~v~v~GG~  139 (387)
T d1k3ia3         128 MSDGRVFTIGGS  139 (387)
T ss_dssp             CTTSCEEEECCC
T ss_pred             ecCCceeeeccc
Confidence            667888777543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.61  E-value=7.4  Score=31.06  Aligned_cols=85  Identities=8%  Similarity=-0.132  Sum_probs=47.9

Q ss_pred             CcEEEEEeCCCCeEEEEecCccccceeEEecCCCEEEEEeC---------------CCCEEEEEEecCCCCCceeEEecc
Q 047259           37 HGQLLKYDPELEETTVLHEGFYFANGVALSKDENFVVVCES---------------WKFRCRRYWLKGPRQGRLESFIEH  101 (225)
Q Consensus        37 ~g~v~~~d~~~~~~~~~~~~~~~pnGi~~~~dg~~Lyv~~~---------------~~~~I~~~~~~~~~~~~~~~~~~~  101 (225)
                      .-.|..+|..+|+.....-......+++|++|++.||.+..               ...+|++..+.+.......++-..
T Consensus       150 ~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~  229 (430)
T d1qfma1         150 WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP  229 (430)
T ss_dssp             CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred             hheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccc
Confidence            45678889888865432111122368999999998876642               234788887754322233333211


Q ss_pred             -CCCCCCceEECCCCCEEEEe
Q 047259          102 -LPGGPDNINLAPDGSFWVAL  121 (225)
Q Consensus       102 -~~g~Pd~i~~d~~G~l~v~~  121 (225)
                       .+..--++.+..+|+..+..
T Consensus       230 d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         230 DEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             TCTTCEEEEEECTTSCEEEEE
T ss_pred             cCCceEEeeeccCCcceeeEE
Confidence             11122345667788765543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.57  E-value=6.3  Score=30.24  Aligned_cols=43  Identities=7%  Similarity=-0.155  Sum_probs=23.8

Q ss_pred             EEEEEEecCCCCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           81 RCRRYWLKGPRQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        81 ~I~~~~~~~~~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      .+..|++..+...............--+.++..+|++|+....
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~   95 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN   95 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecC
Confidence            4667888754222221111101112346788999999997654

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=83.47  E-value=6.3  Score=28.80  Aligned_cols=113  Identities=6%  Similarity=-0.029  Sum_probs=61.1

Q ss_pred             EEEcCCCcEEEEcCCCCCCcchhhh-------------hcccCCCCcEEEEEeCCCCeEEEE-----------------e
Q 047259            5 VIEASDGSLYFTVSSKKYTPAEYYK-------------DLVEGKPHGQLLKYDPELEETTVL-----------------H   54 (225)
Q Consensus         5 v~~~~dG~iy~td~~~~~~~~~~~~-------------~~~~~~~~g~v~~~d~~~~~~~~~-----------------~   54 (225)
                      +-...+|+||...++. ..--.|++             .++.=.+.|.+|.+..  +++-.-                 .
T Consensus        53 LyaVr~~~lY~Gp~~s-~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~--~~LYr~~pPtn~~q~W~g~a~~vG  129 (235)
T d1tl2a_          53 LYGVLNDKIYKGTPPT-HDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK--DKLYKASPPQSDTDNWIARATEVG  129 (235)
T ss_dssp             EEEEETTEEEEESCCC-STTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHSEEEE
T ss_pred             EEEEECCeEEECCCCC-cchHHHHHhhhhcccCcccceEEEEECCCceEEEecC--cceecCCcCcccchhhhhhhhhhc
Confidence            4455677899988763 21112221             1233356777777763  343321                 1


Q ss_pred             c-CccccceeEEecCCCEEEEEeCCCCEEEE-EEecCC---CCCceeEEeccCCCCCCceEECCCCCEEEEeec
Q 047259           55 E-GFYFANGVALSKDENFVVVCESWKFRCRR-YWLKGP---RQGRLESFIEHLPGGPDNINLAPDGSFWVALIK  123 (225)
Q Consensus        55 ~-~~~~pnGi~~~~dg~~Lyv~~~~~~~I~~-~~~~~~---~~~~~~~~~~~~~g~Pd~i~~d~~G~l~v~~~~  123 (225)
                      . +-..-.-|-++|+|. ||-....  +|++ ..+.+.   -+...+.+-...-..+..|.+.++|+||-+..+
T Consensus       130 ~~gw~df~~lFFdP~G~-LYaV~~~--~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~~g  200 (235)
T d1tl2a_         130 SGGWSGFKFLFFHPNGY-LYAVHGQ--QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQGG  200 (235)
T ss_dssp             CSSGGGEEEEEECTTSC-EEEEETT--EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEETT
T ss_pred             cCCcCceeEEEECCCce-EEEEECC--cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEeCC
Confidence            1 112234789999996 9988544  4554 433321   022222332222234678999999999988643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.24  E-value=9.8  Score=32.10  Aligned_cols=57  Identities=11%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             ceEEEEECCC-CcEEEEEECCCCCccc-ceeEEEEeCCEEEEeeCC-----CCeEEEEeCCCcc
Q 047259          160 GARIVKVDTH-GKIIMDFNDPNATYIS-FVTSAVEFEDNLYMASIQ-----SKFVGKLPLNTPE  216 (225)
Q Consensus       160 ~~~V~~~d~~-G~~~~~~~~p~g~~~~-~~t~~~~~~~~Lyv~~~~-----~~~i~~~~~~~~~  216 (225)
                      .+.++.+|.+ |+++..+...+-+... ..+.-...++.+||+...     +.+|..+++.+-+
T Consensus       130 dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~  193 (596)
T d1w6sa_         130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (596)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCc
Confidence            4688999986 9998887653322111 122224568999999753     4778888876544